Multiple sequence alignment - TraesCS6B01G349400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G349400 chr6B 100.000 5546 0 0 925 6470 614305597 614311142 0.000000e+00 10242.0
1 TraesCS6B01G349400 chr6B 100.000 500 0 0 1 500 614304673 614305172 0.000000e+00 924.0
2 TraesCS6B01G349400 chr6A 94.777 5571 172 45 977 6466 554818165 554823697 0.000000e+00 8565.0
3 TraesCS6B01G349400 chr6A 87.415 294 13 10 178 460 554817430 554817710 3.770000e-82 316.0
4 TraesCS6B01G349400 chr6D 95.483 4118 120 15 2396 6469 409342089 409346184 0.000000e+00 6514.0
5 TraesCS6B01G349400 chr6D 91.966 1307 52 21 942 2211 409340420 409341710 0.000000e+00 1783.0
6 TraesCS6B01G349400 chr6D 88.081 344 12 8 165 498 409339658 409339982 1.320000e-101 381.0
7 TraesCS6B01G349400 chr6D 96.795 156 4 1 2210 2365 409341748 409341902 6.440000e-65 259.0
8 TraesCS6B01G349400 chr6D 87.850 107 12 1 6284 6390 422190081 422190186 2.450000e-24 124.0
9 TraesCS6B01G349400 chr6D 91.026 78 6 1 6284 6361 422206260 422206184 3.190000e-18 104.0
10 TraesCS6B01G349400 chr6D 92.982 57 3 1 6328 6384 422206197 422206142 1.500000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G349400 chr6B 614304673 614311142 6469 False 5583.00 10242 100.00000 1 6470 2 chr6B.!!$F1 6469
1 TraesCS6B01G349400 chr6A 554817430 554823697 6267 False 4440.50 8565 91.09600 178 6466 2 chr6A.!!$F1 6288
2 TraesCS6B01G349400 chr6D 409339658 409346184 6526 False 2234.25 6514 93.08125 165 6469 4 chr6D.!!$F2 6304

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.107654 GGCACGGCTTCTAGGAATGT 60.108 55.000 0.0 0.0 0.0 2.71 F
159 160 0.181114 TCATCCGGGCTCATTGAAGG 59.819 55.000 0.0 0.0 0.0 3.46 F
389 409 0.253207 TCCCTTCCTTCCTTCCCTCC 60.253 60.000 0.0 0.0 0.0 4.30 F
393 413 0.253207 TTCCTTCCTTCCCTCCCTCC 60.253 60.000 0.0 0.0 0.0 4.30 F
396 416 0.692756 CTTCCTTCCCTCCCTCCCTC 60.693 65.000 0.0 0.0 0.0 4.30 F
1720 1777 1.129251 CGAGCGGTAAGTTCACGTCTA 59.871 52.381 0.0 0.0 0.0 2.59 F
2721 3029 1.433534 GAGGAGTTTCTGTTGCTCGG 58.566 55.000 0.0 0.0 0.0 4.63 F
3101 3409 4.141981 TGGAGAGCAGAGAAATCAGATGAC 60.142 45.833 0.0 0.0 0.0 3.06 F
4587 4895 1.746615 CACTGGGCGGAATGGAGTG 60.747 63.158 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1462 1.135199 CGCAAAGTTAGAGCTACGGGA 60.135 52.381 0.00 0.00 0.00 5.14 R
1411 1463 1.278238 CGCAAAGTTAGAGCTACGGG 58.722 55.000 0.00 0.00 0.00 5.28 R
2309 2431 1.376812 GCCCACGGGAAAGACGAAT 60.377 57.895 6.21 0.00 37.50 3.34 R
2318 2441 1.847737 AGGTTAATATTGCCCACGGGA 59.152 47.619 6.21 0.00 37.50 5.14 R
2321 2444 2.020720 TGCAGGTTAATATTGCCCACG 58.979 47.619 0.00 0.00 37.03 4.94 R
3421 3729 0.465097 GGGAGACATGCCATGGACTG 60.465 60.000 18.40 14.09 36.78 3.51 R
3618 3926 2.306341 ATGCAGTCTCTGGATGAACG 57.694 50.000 3.17 0.00 40.85 3.95 R
4791 5099 1.912043 AGAGCCCACATGTAGAGCTTT 59.088 47.619 15.26 8.88 32.97 3.51 R
5548 5857 0.038526 ACCGCTACCTTTCTGTCACG 60.039 55.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.243902 TTTTTGGCACGGCTTCTAGG 58.756 50.000 0.00 0.00 0.00 3.02
25 26 0.398696 TTTTGGCACGGCTTCTAGGA 59.601 50.000 0.00 0.00 0.00 2.94
26 27 0.398696 TTTGGCACGGCTTCTAGGAA 59.601 50.000 0.00 0.00 0.00 3.36
27 28 0.618458 TTGGCACGGCTTCTAGGAAT 59.382 50.000 0.00 0.00 0.00 3.01
28 29 0.107703 TGGCACGGCTTCTAGGAATG 60.108 55.000 0.00 0.00 0.00 2.67
29 30 0.107654 GGCACGGCTTCTAGGAATGT 60.108 55.000 0.00 0.00 0.00 2.71
30 31 1.009829 GCACGGCTTCTAGGAATGTG 58.990 55.000 0.00 0.00 0.00 3.21
31 32 1.405526 GCACGGCTTCTAGGAATGTGA 60.406 52.381 2.03 0.00 0.00 3.58
32 33 2.743183 GCACGGCTTCTAGGAATGTGAT 60.743 50.000 2.03 0.00 0.00 3.06
33 34 3.535561 CACGGCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 0.00 2.57
34 35 3.941483 CACGGCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 0.00 2.17
35 36 3.941483 ACGGCTTCTAGGAATGTGATTTG 59.059 43.478 0.00 0.00 0.00 2.32
36 37 4.191544 CGGCTTCTAGGAATGTGATTTGA 58.808 43.478 0.00 0.00 0.00 2.69
37 38 4.818546 CGGCTTCTAGGAATGTGATTTGAT 59.181 41.667 0.00 0.00 0.00 2.57
38 39 5.277683 CGGCTTCTAGGAATGTGATTTGATG 60.278 44.000 0.00 0.00 0.00 3.07
39 40 5.009410 GGCTTCTAGGAATGTGATTTGATGG 59.991 44.000 0.00 0.00 0.00 3.51
40 41 5.591877 GCTTCTAGGAATGTGATTTGATGGT 59.408 40.000 0.00 0.00 0.00 3.55
41 42 6.459298 GCTTCTAGGAATGTGATTTGATGGTG 60.459 42.308 0.00 0.00 0.00 4.17
42 43 6.312141 TCTAGGAATGTGATTTGATGGTGA 57.688 37.500 0.00 0.00 0.00 4.02
43 44 6.720309 TCTAGGAATGTGATTTGATGGTGAA 58.280 36.000 0.00 0.00 0.00 3.18
44 45 7.174413 TCTAGGAATGTGATTTGATGGTGAAA 58.826 34.615 0.00 0.00 0.00 2.69
45 46 6.669125 AGGAATGTGATTTGATGGTGAAAA 57.331 33.333 0.00 0.00 0.00 2.29
46 47 7.065120 AGGAATGTGATTTGATGGTGAAAAA 57.935 32.000 0.00 0.00 0.00 1.94
47 48 7.682628 AGGAATGTGATTTGATGGTGAAAAAT 58.317 30.769 0.00 0.00 0.00 1.82
48 49 8.158789 AGGAATGTGATTTGATGGTGAAAAATT 58.841 29.630 0.00 0.00 0.00 1.82
49 50 9.434420 GGAATGTGATTTGATGGTGAAAAATTA 57.566 29.630 0.00 0.00 0.00 1.40
51 52 9.775854 AATGTGATTTGATGGTGAAAAATTACA 57.224 25.926 7.22 7.22 41.23 2.41
52 53 9.947433 ATGTGATTTGATGGTGAAAAATTACAT 57.053 25.926 10.28 10.28 41.67 2.29
53 54 9.205719 TGTGATTTGATGGTGAAAAATTACATG 57.794 29.630 0.00 0.00 35.87 3.21
54 55 8.170553 GTGATTTGATGGTGAAAAATTACATGC 58.829 33.333 0.00 0.00 32.82 4.06
55 56 7.876582 TGATTTGATGGTGAAAAATTACATGCA 59.123 29.630 0.00 0.00 0.00 3.96
56 57 7.418840 TTTGATGGTGAAAAATTACATGCAC 57.581 32.000 0.00 0.00 0.00 4.57
57 58 6.343716 TGATGGTGAAAAATTACATGCACT 57.656 33.333 0.00 0.00 0.00 4.40
58 59 7.459795 TGATGGTGAAAAATTACATGCACTA 57.540 32.000 0.00 0.00 0.00 2.74
59 60 7.890515 TGATGGTGAAAAATTACATGCACTAA 58.109 30.769 0.00 0.00 0.00 2.24
60 61 8.530311 TGATGGTGAAAAATTACATGCACTAAT 58.470 29.630 0.00 0.00 0.00 1.73
61 62 9.369904 GATGGTGAAAAATTACATGCACTAATT 57.630 29.630 0.00 0.00 0.00 1.40
62 63 9.723601 ATGGTGAAAAATTACATGCACTAATTT 57.276 25.926 14.25 14.25 36.00 1.82
63 64 9.553064 TGGTGAAAAATTACATGCACTAATTTT 57.447 25.926 20.87 20.87 41.99 1.82
88 89 8.741101 TTTTTATCGGTGTTCTTGATTTGATG 57.259 30.769 0.00 0.00 0.00 3.07
89 90 7.680442 TTTATCGGTGTTCTTGATTTGATGA 57.320 32.000 0.00 0.00 0.00 2.92
90 91 5.551760 ATCGGTGTTCTTGATTTGATGAC 57.448 39.130 0.00 0.00 0.00 3.06
91 92 4.384940 TCGGTGTTCTTGATTTGATGACA 58.615 39.130 0.00 0.00 0.00 3.58
92 93 4.819088 TCGGTGTTCTTGATTTGATGACAA 59.181 37.500 0.00 0.00 0.00 3.18
94 95 5.976534 CGGTGTTCTTGATTTGATGACAAAA 59.023 36.000 0.00 0.00 46.77 2.44
95 96 6.475076 CGGTGTTCTTGATTTGATGACAAAAA 59.525 34.615 0.00 0.00 46.77 1.94
148 149 7.801716 TTTTTGATTCTACTATTCATCCGGG 57.198 36.000 0.00 0.00 0.00 5.73
149 150 4.537135 TGATTCTACTATTCATCCGGGC 57.463 45.455 0.00 0.00 0.00 6.13
150 151 4.160329 TGATTCTACTATTCATCCGGGCT 58.840 43.478 0.00 0.00 0.00 5.19
151 152 4.220821 TGATTCTACTATTCATCCGGGCTC 59.779 45.833 0.00 0.00 0.00 4.70
152 153 3.238788 TCTACTATTCATCCGGGCTCA 57.761 47.619 0.00 0.00 0.00 4.26
153 154 3.779444 TCTACTATTCATCCGGGCTCAT 58.221 45.455 0.00 0.00 0.00 2.90
154 155 4.160329 TCTACTATTCATCCGGGCTCATT 58.840 43.478 0.00 0.00 0.00 2.57
155 156 3.131709 ACTATTCATCCGGGCTCATTG 57.868 47.619 0.00 0.00 0.00 2.82
156 157 2.705658 ACTATTCATCCGGGCTCATTGA 59.294 45.455 0.00 0.00 0.00 2.57
157 158 2.734755 ATTCATCCGGGCTCATTGAA 57.265 45.000 0.00 2.63 0.00 2.69
158 159 2.042686 TTCATCCGGGCTCATTGAAG 57.957 50.000 0.00 0.00 0.00 3.02
159 160 0.181114 TCATCCGGGCTCATTGAAGG 59.819 55.000 0.00 0.00 0.00 3.46
160 161 1.152881 ATCCGGGCTCATTGAAGGC 60.153 57.895 0.00 0.00 40.93 4.35
347 367 2.830923 CCAACACAATATCCCAAAGCCA 59.169 45.455 0.00 0.00 0.00 4.75
389 409 0.253207 TCCCTTCCTTCCTTCCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
390 410 1.282653 CCCTTCCTTCCTTCCCTCCC 61.283 65.000 0.00 0.00 0.00 4.30
391 411 0.253394 CCTTCCTTCCTTCCCTCCCT 60.253 60.000 0.00 0.00 0.00 4.20
392 412 1.208706 CTTCCTTCCTTCCCTCCCTC 58.791 60.000 0.00 0.00 0.00 4.30
393 413 0.253207 TTCCTTCCTTCCCTCCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
394 414 1.694525 CCTTCCTTCCCTCCCTCCC 60.695 68.421 0.00 0.00 0.00 4.30
395 415 1.398234 CTTCCTTCCCTCCCTCCCT 59.602 63.158 0.00 0.00 0.00 4.20
396 416 0.692756 CTTCCTTCCCTCCCTCCCTC 60.693 65.000 0.00 0.00 0.00 4.30
397 417 2.040359 CCTTCCCTCCCTCCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
398 418 2.040359 CTTCCCTCCCTCCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
399 419 2.543637 TTCCCTCCCTCCCTCCCT 60.544 66.667 0.00 0.00 0.00 4.20
400 420 2.613576 CTTCCCTCCCTCCCTCCCTC 62.614 70.000 0.00 0.00 0.00 4.30
401 421 4.548513 CCCTCCCTCCCTCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
478 498 2.442272 GCCCGCCTCCTCTGTCTA 60.442 66.667 0.00 0.00 0.00 2.59
1362 1412 2.606519 TACTGGCCCGAGCAGGTT 60.607 61.111 0.00 0.00 42.56 3.50
1408 1460 2.558313 GTGACGCTTGCAGCCTTC 59.442 61.111 0.00 1.55 38.18 3.46
1409 1461 1.963338 GTGACGCTTGCAGCCTTCT 60.963 57.895 0.00 0.00 38.18 2.85
1410 1462 1.227943 TGACGCTTGCAGCCTTCTT 60.228 52.632 0.00 0.00 38.18 2.52
1411 1463 1.230635 TGACGCTTGCAGCCTTCTTC 61.231 55.000 0.00 0.00 38.18 2.87
1514 1568 2.544721 TGCAGAGAGGGAATGTCTTCT 58.455 47.619 0.00 0.00 26.31 2.85
1584 1641 4.878971 GGAGTCCTTCCTAATTTGCTTCTC 59.121 45.833 0.41 0.00 43.16 2.87
1605 1662 4.336280 TCACTGTACTGTCTCTGTGCTAT 58.664 43.478 1.89 0.00 34.89 2.97
1720 1777 1.129251 CGAGCGGTAAGTTCACGTCTA 59.871 52.381 0.00 0.00 0.00 2.59
1731 1788 2.588027 TCACGTCTACTTGCACACAA 57.412 45.000 0.00 0.00 0.00 3.33
1732 1789 2.894902 TCACGTCTACTTGCACACAAA 58.105 42.857 0.00 0.00 34.74 2.83
1806 1876 5.749462 AGCAATCCCATATTAGTGGATAGC 58.251 41.667 0.00 0.00 42.02 2.97
1911 1981 3.258372 TGCTAGGAACTCAGGTAACACAG 59.742 47.826 0.00 0.00 41.75 3.66
1934 2011 3.647590 TGCTTGTCATATATGGCAGGAGA 59.352 43.478 27.94 13.65 44.05 3.71
1944 2021 2.145397 TGGCAGGAGACGAGTCTAAT 57.855 50.000 5.65 0.00 40.61 1.73
1951 2028 6.043411 GCAGGAGACGAGTCTAATAACAAAT 58.957 40.000 5.65 0.00 40.61 2.32
2129 2211 3.367703 GGTCAAGCACATTGGGAGAATTG 60.368 47.826 0.00 0.00 39.54 2.32
2267 2389 7.085746 TGCATGATACATTATGTTTATGCTGC 58.914 34.615 25.75 18.11 38.89 5.25
2309 2431 2.224744 TGCTGAAGATGTTGTGCCCTTA 60.225 45.455 0.00 0.00 0.00 2.69
2318 2441 3.482436 TGTTGTGCCCTTATTCGTCTTT 58.518 40.909 0.00 0.00 0.00 2.52
2321 2444 2.014857 GTGCCCTTATTCGTCTTTCCC 58.985 52.381 0.00 0.00 0.00 3.97
2369 2492 3.713858 TGCAATCACCTTGTCTGTTTG 57.286 42.857 0.00 0.00 37.18 2.93
2371 2494 3.066621 TGCAATCACCTTGTCTGTTTGTC 59.933 43.478 0.00 0.00 37.18 3.18
2372 2495 3.316308 GCAATCACCTTGTCTGTTTGTCT 59.684 43.478 0.00 0.00 37.18 3.41
2403 2537 4.560128 TGAGAAAACATTCTCTCAGGACG 58.440 43.478 16.85 0.00 45.77 4.79
2404 2538 4.039245 TGAGAAAACATTCTCTCAGGACGT 59.961 41.667 16.85 0.00 45.77 4.34
2405 2539 4.561105 AGAAAACATTCTCTCAGGACGTC 58.439 43.478 7.13 7.13 0.00 4.34
2406 2540 4.282195 AGAAAACATTCTCTCAGGACGTCT 59.718 41.667 16.46 0.00 0.00 4.18
2445 2753 6.578020 AACAATTCATGCAGCGAATTAATG 57.422 33.333 20.52 14.48 40.29 1.90
2528 2836 7.395190 TGGAATTATGAATGTTCAGTTCTGG 57.605 36.000 1.65 0.00 41.08 3.86
2534 2842 4.780815 TGAATGTTCAGTTCTGGTCTTGT 58.219 39.130 0.00 0.00 32.50 3.16
2588 2896 5.182001 GGTTCTCTTACTTGCAATGACATGT 59.818 40.000 0.00 0.00 0.00 3.21
2599 2907 6.335471 TGCAATGACATGTTCTTTCTTGAT 57.665 33.333 0.00 0.00 0.00 2.57
2721 3029 1.433534 GAGGAGTTTCTGTTGCTCGG 58.566 55.000 0.00 0.00 0.00 4.63
2739 3047 4.554134 GCTCGGGAAGTTAGTGAAACAAAC 60.554 45.833 0.00 0.00 41.43 2.93
2908 3216 5.880332 GCTACTGTCCCAGTGAATTATGAAA 59.120 40.000 7.13 0.00 45.01 2.69
3052 3360 4.161333 CCGTAGTACTGTTGTAGGTTTCG 58.839 47.826 5.39 0.00 0.00 3.46
3101 3409 4.141981 TGGAGAGCAGAGAAATCAGATGAC 60.142 45.833 0.00 0.00 0.00 3.06
3150 3458 8.327941 ACCATATATCATCCTCAATTTTCACG 57.672 34.615 0.00 0.00 0.00 4.35
3207 3515 4.883083 TCCCGCAGATGATTGTTAGTATC 58.117 43.478 0.00 0.00 0.00 2.24
3421 3729 7.830099 ATATCTGATGTTGAATTTTCCCCTC 57.170 36.000 0.00 0.00 0.00 4.30
3618 3926 6.260050 TCCATATTGCGGATGTTTCTTACTTC 59.740 38.462 0.00 0.00 0.00 3.01
3818 4126 3.627395 AGTTAATCGCTGGATTGGTCA 57.373 42.857 0.00 0.00 42.72 4.02
4129 4437 3.961480 TCATTGTCGAGGAGTTGATGT 57.039 42.857 0.00 0.00 0.00 3.06
4262 4570 6.437094 CATTTTGTGCTAAAAATGGGTTTGG 58.563 36.000 20.64 3.48 46.61 3.28
4309 4617 7.436080 GTCAACTTCATCTTTCAATTTGCAGAA 59.564 33.333 3.18 0.00 0.00 3.02
4311 4619 9.414295 CAACTTCATCTTTCAATTTGCAGAATA 57.586 29.630 3.18 0.00 0.00 1.75
4458 4766 7.418337 TCATTATGCGCTATCTATCCCTTTA 57.582 36.000 9.73 0.00 0.00 1.85
4461 4769 9.935241 CATTATGCGCTATCTATCCCTTTATAT 57.065 33.333 9.73 0.00 0.00 0.86
4587 4895 1.746615 CACTGGGCGGAATGGAGTG 60.747 63.158 0.00 0.00 0.00 3.51
4674 4982 4.566488 GCTGAATCCAAAGAAGGGAGAGAA 60.566 45.833 0.00 0.00 37.96 2.87
4710 5018 4.262617 CAGCTAAGAAGTTTAAGGTCCCC 58.737 47.826 0.00 0.00 0.00 4.81
4943 5252 3.300388 CCTGGTCTCCAATGCTAGAGTA 58.700 50.000 0.00 0.00 30.80 2.59
5012 5321 3.951680 CGGTATGACTTTGCCCCTAATTT 59.048 43.478 0.00 0.00 0.00 1.82
5013 5322 4.202010 CGGTATGACTTTGCCCCTAATTTG 60.202 45.833 0.00 0.00 0.00 2.32
5034 5343 4.953667 TGCATGTAATAGAAGCTCTCCAG 58.046 43.478 0.00 0.00 0.00 3.86
5058 5367 3.006940 TGTGTGTTTTGAGTCACCTGAC 58.993 45.455 0.00 0.00 45.08 3.51
5062 5371 3.251004 GTGTTTTGAGTCACCTGACCATC 59.749 47.826 1.66 0.00 45.85 3.51
5106 5415 8.423906 AACGGAGGATATACTATGATGAAGTT 57.576 34.615 0.00 0.00 0.00 2.66
5259 5568 4.232091 ACCCATCCGATCTAATGTTACCT 58.768 43.478 0.00 0.00 0.00 3.08
5271 5580 7.159322 TCTAATGTTACCTGAAGACAGAGAC 57.841 40.000 0.00 0.00 46.03 3.36
5301 5610 2.297597 AGCAACTGAGACTACTGTGGAC 59.702 50.000 0.00 0.00 0.00 4.02
5313 5622 3.838244 ACTGTGGACTCAGTTTTGCTA 57.162 42.857 1.49 0.00 44.92 3.49
5349 5658 1.455383 AAGTTGAAGTTGCCCCAGCG 61.455 55.000 0.00 0.00 44.31 5.18
5406 5715 1.545582 CCCGTGGTTCTTCATGCAATT 59.454 47.619 0.00 0.00 0.00 2.32
5483 5792 2.170397 TCAAGTGACCAGAAACAGCTCA 59.830 45.455 0.00 0.00 0.00 4.26
5548 5857 8.219105 AGTCGAACAAGACAATCGTAATAAAAC 58.781 33.333 0.00 0.00 43.24 2.43
5566 5875 0.038526 ACGTGACAGAAAGGTAGCGG 60.039 55.000 0.00 0.00 0.00 5.52
5571 5880 4.060205 GTGACAGAAAGGTAGCGGTAAAA 58.940 43.478 0.00 0.00 0.00 1.52
5629 5938 9.924010 AAGTTAGTGTTGTAGATACTCCTATCT 57.076 33.333 0.00 0.00 41.76 1.98
5702 6011 1.613925 GGTCAAGTGGCCTTCCTTTTC 59.386 52.381 3.32 0.00 36.72 2.29
5708 6017 1.303317 GGCCTTCCTTTTCGCTCCA 60.303 57.895 0.00 0.00 0.00 3.86
5735 6044 1.043816 CCTGACCAGGCGACTCATAT 58.956 55.000 2.75 0.00 42.44 1.78
5736 6045 1.414181 CCTGACCAGGCGACTCATATT 59.586 52.381 2.75 0.00 42.44 1.28
5737 6046 2.477825 CTGACCAGGCGACTCATATTG 58.522 52.381 0.00 0.00 40.21 1.90
5738 6047 1.138859 TGACCAGGCGACTCATATTGG 59.861 52.381 0.00 0.00 40.21 3.16
5739 6048 0.179045 ACCAGGCGACTCATATTGGC 60.179 55.000 0.00 0.00 40.21 4.52
5740 6049 0.886490 CCAGGCGACTCATATTGGCC 60.886 60.000 0.00 0.00 44.07 5.36
5741 6050 3.642755 GGCGACTCATATTGGCCG 58.357 61.111 0.00 0.00 33.58 6.13
5742 6051 1.227556 GGCGACTCATATTGGCCGT 60.228 57.895 0.00 0.00 33.58 5.68
5743 6052 0.032952 GGCGACTCATATTGGCCGTA 59.967 55.000 0.00 0.00 33.58 4.02
5744 6053 1.419374 GCGACTCATATTGGCCGTAG 58.581 55.000 0.00 0.00 0.00 3.51
5745 6054 1.269621 GCGACTCATATTGGCCGTAGT 60.270 52.381 0.00 0.00 0.00 2.73
5746 6055 2.394708 CGACTCATATTGGCCGTAGTG 58.605 52.381 0.00 0.00 0.00 2.74
5785 6105 6.716934 TGATGTATTCACTAGTTCCTCCTC 57.283 41.667 0.00 0.00 0.00 3.71
5846 6166 2.897271 TACTGGTGGGTTCATGCATT 57.103 45.000 0.00 0.00 0.00 3.56
5847 6167 2.014010 ACTGGTGGGTTCATGCATTT 57.986 45.000 0.00 0.00 0.00 2.32
5891 6211 0.034616 AGGAATATCGCTGCTGAGCC 59.965 55.000 0.23 0.00 42.91 4.70
5896 6216 1.617018 TATCGCTGCTGAGCCCTGTT 61.617 55.000 0.23 0.00 42.91 3.16
5949 6269 6.351711 CCCAAATAAAATGTATTGGCACCTCA 60.352 38.462 0.00 0.00 40.77 3.86
5953 6273 5.587388 AAAATGTATTGGCACCTCATCTG 57.413 39.130 0.00 0.00 0.00 2.90
6000 6330 6.645700 TTCACTTGTTTCTTTTTGTGCATC 57.354 33.333 0.00 0.00 0.00 3.91
6036 6366 7.348274 TGATCTTGGACCTTGGTTATAGAATCT 59.652 37.037 0.00 0.00 0.00 2.40
6084 6437 4.873129 ATAGCGTGCGCCTCACCG 62.873 66.667 13.21 0.03 42.69 4.94
6138 6491 3.536956 TCCGTTTGTTCTGTTGAGTCT 57.463 42.857 0.00 0.00 0.00 3.24
6188 6541 1.009829 CTCTGCCCAGCGTTTATCAC 58.990 55.000 0.00 0.00 0.00 3.06
6209 6562 3.006677 GCCTGCTTATCCCACCCA 58.993 61.111 0.00 0.00 0.00 4.51
6255 6619 1.135603 TGGTACGGAAATGACGTCGAG 60.136 52.381 11.62 0.91 44.37 4.04
6271 6635 1.152830 GAGGAGTTGCAACCCCCAA 59.847 57.895 29.21 0.00 0.00 4.12
6272 6636 1.152546 AGGAGTTGCAACCCCCAAC 60.153 57.895 29.21 14.73 42.11 3.77
6357 6721 3.931285 TGCTCATCGAACGAATGAATG 57.069 42.857 0.12 0.00 0.00 2.67
6360 6724 3.603401 GCTCATCGAACGAATGAATGCTC 60.603 47.826 0.12 0.00 0.00 4.26
6374 6738 8.820933 CGAATGAATGCTCGGATATATGTTTAT 58.179 33.333 0.00 0.00 0.00 1.40
6384 6750 9.929180 CTCGGATATATGTTTATCTCTTTGGAA 57.071 33.333 0.00 0.00 0.00 3.53
6415 6792 4.932200 CGCTAGAAAGTTTCTGAACCTGAT 59.068 41.667 25.27 1.38 40.94 2.90
6440 6817 4.160439 TCCAGTTTTATCTGCATCGAGAGT 59.840 41.667 0.00 0.00 34.47 3.24
6469 6846 4.997395 CACATCCGGGTTATTCAGGATAAG 59.003 45.833 0.00 0.00 41.17 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.202830 TCCTAGAAGCCGTGCCAAAAA 60.203 47.619 0.00 0.00 0.00 1.94
6 7 0.398696 TCCTAGAAGCCGTGCCAAAA 59.601 50.000 0.00 0.00 0.00 2.44
7 8 0.398696 TTCCTAGAAGCCGTGCCAAA 59.601 50.000 0.00 0.00 0.00 3.28
8 9 0.618458 ATTCCTAGAAGCCGTGCCAA 59.382 50.000 0.00 0.00 0.00 4.52
9 10 0.107703 CATTCCTAGAAGCCGTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
10 11 0.107654 ACATTCCTAGAAGCCGTGCC 60.108 55.000 0.00 0.00 0.00 5.01
11 12 1.009829 CACATTCCTAGAAGCCGTGC 58.990 55.000 0.00 0.00 0.00 5.34
12 13 2.672961 TCACATTCCTAGAAGCCGTG 57.327 50.000 0.00 0.00 0.00 4.94
13 14 3.914426 AATCACATTCCTAGAAGCCGT 57.086 42.857 0.00 0.00 0.00 5.68
14 15 4.191544 TCAAATCACATTCCTAGAAGCCG 58.808 43.478 0.00 0.00 0.00 5.52
15 16 5.009410 CCATCAAATCACATTCCTAGAAGCC 59.991 44.000 0.00 0.00 0.00 4.35
16 17 5.591877 ACCATCAAATCACATTCCTAGAAGC 59.408 40.000 0.00 0.00 0.00 3.86
17 18 6.825213 TCACCATCAAATCACATTCCTAGAAG 59.175 38.462 0.00 0.00 0.00 2.85
18 19 6.720309 TCACCATCAAATCACATTCCTAGAA 58.280 36.000 0.00 0.00 0.00 2.10
19 20 6.312141 TCACCATCAAATCACATTCCTAGA 57.688 37.500 0.00 0.00 0.00 2.43
20 21 7.395190 TTTCACCATCAAATCACATTCCTAG 57.605 36.000 0.00 0.00 0.00 3.02
21 22 7.773489 TTTTCACCATCAAATCACATTCCTA 57.227 32.000 0.00 0.00 0.00 2.94
22 23 6.669125 TTTTCACCATCAAATCACATTCCT 57.331 33.333 0.00 0.00 0.00 3.36
23 24 7.910441 ATTTTTCACCATCAAATCACATTCC 57.090 32.000 0.00 0.00 0.00 3.01
25 26 9.775854 TGTAATTTTTCACCATCAAATCACATT 57.224 25.926 0.00 0.00 0.00 2.71
26 27 9.947433 ATGTAATTTTTCACCATCAAATCACAT 57.053 25.926 0.00 0.00 0.00 3.21
27 28 9.205719 CATGTAATTTTTCACCATCAAATCACA 57.794 29.630 0.00 0.00 0.00 3.58
28 29 8.170553 GCATGTAATTTTTCACCATCAAATCAC 58.829 33.333 0.00 0.00 0.00 3.06
29 30 7.876582 TGCATGTAATTTTTCACCATCAAATCA 59.123 29.630 0.00 0.00 0.00 2.57
30 31 8.170553 GTGCATGTAATTTTTCACCATCAAATC 58.829 33.333 0.00 0.00 0.00 2.17
31 32 7.879160 AGTGCATGTAATTTTTCACCATCAAAT 59.121 29.630 0.00 0.00 0.00 2.32
32 33 7.215789 AGTGCATGTAATTTTTCACCATCAAA 58.784 30.769 0.00 0.00 0.00 2.69
33 34 6.757237 AGTGCATGTAATTTTTCACCATCAA 58.243 32.000 0.00 0.00 0.00 2.57
34 35 6.343716 AGTGCATGTAATTTTTCACCATCA 57.656 33.333 0.00 0.00 0.00 3.07
35 36 8.931385 ATTAGTGCATGTAATTTTTCACCATC 57.069 30.769 0.00 0.00 0.00 3.51
36 37 9.723601 AAATTAGTGCATGTAATTTTTCACCAT 57.276 25.926 17.66 1.83 36.94 3.55
37 38 9.553064 AAAATTAGTGCATGTAATTTTTCACCA 57.447 25.926 23.68 0.00 43.03 4.17
63 64 8.572185 TCATCAAATCAAGAACACCGATAAAAA 58.428 29.630 0.00 0.00 0.00 1.94
64 65 8.020819 GTCATCAAATCAAGAACACCGATAAAA 58.979 33.333 0.00 0.00 0.00 1.52
65 66 7.174080 TGTCATCAAATCAAGAACACCGATAAA 59.826 33.333 0.00 0.00 0.00 1.40
66 67 6.652900 TGTCATCAAATCAAGAACACCGATAA 59.347 34.615 0.00 0.00 0.00 1.75
67 68 6.169800 TGTCATCAAATCAAGAACACCGATA 58.830 36.000 0.00 0.00 0.00 2.92
68 69 5.003160 TGTCATCAAATCAAGAACACCGAT 58.997 37.500 0.00 0.00 0.00 4.18
69 70 4.384940 TGTCATCAAATCAAGAACACCGA 58.615 39.130 0.00 0.00 0.00 4.69
70 71 4.747540 TGTCATCAAATCAAGAACACCG 57.252 40.909 0.00 0.00 0.00 4.94
71 72 7.769272 TTTTTGTCATCAAATCAAGAACACC 57.231 32.000 0.00 0.00 42.14 4.16
124 125 6.262273 GCCCGGATGAATAGTAGAATCAAAAA 59.738 38.462 0.73 0.00 0.00 1.94
125 126 5.763204 GCCCGGATGAATAGTAGAATCAAAA 59.237 40.000 0.73 0.00 0.00 2.44
126 127 5.071788 AGCCCGGATGAATAGTAGAATCAAA 59.928 40.000 0.73 0.00 0.00 2.69
127 128 4.593206 AGCCCGGATGAATAGTAGAATCAA 59.407 41.667 0.73 0.00 0.00 2.57
128 129 4.160329 AGCCCGGATGAATAGTAGAATCA 58.840 43.478 0.73 0.00 0.00 2.57
129 130 4.220821 TGAGCCCGGATGAATAGTAGAATC 59.779 45.833 0.73 0.00 0.00 2.52
130 131 4.160329 TGAGCCCGGATGAATAGTAGAAT 58.840 43.478 0.73 0.00 0.00 2.40
131 132 3.572642 TGAGCCCGGATGAATAGTAGAA 58.427 45.455 0.73 0.00 0.00 2.10
132 133 3.238788 TGAGCCCGGATGAATAGTAGA 57.761 47.619 0.73 0.00 0.00 2.59
133 134 4.021104 TCAATGAGCCCGGATGAATAGTAG 60.021 45.833 0.73 0.00 0.00 2.57
134 135 3.901222 TCAATGAGCCCGGATGAATAGTA 59.099 43.478 0.73 0.00 0.00 1.82
135 136 2.705658 TCAATGAGCCCGGATGAATAGT 59.294 45.455 0.73 0.00 0.00 2.12
136 137 3.407424 TCAATGAGCCCGGATGAATAG 57.593 47.619 0.73 0.00 0.00 1.73
137 138 3.496692 CCTTCAATGAGCCCGGATGAATA 60.497 47.826 0.73 0.00 30.39 1.75
138 139 2.579873 CTTCAATGAGCCCGGATGAAT 58.420 47.619 0.73 0.00 30.39 2.57
139 140 1.408683 CCTTCAATGAGCCCGGATGAA 60.409 52.381 0.73 2.94 0.00 2.57
140 141 0.181114 CCTTCAATGAGCCCGGATGA 59.819 55.000 0.73 0.00 0.00 2.92
141 142 1.450531 GCCTTCAATGAGCCCGGATG 61.451 60.000 0.73 0.00 0.00 3.51
142 143 1.152881 GCCTTCAATGAGCCCGGAT 60.153 57.895 0.73 0.00 0.00 4.18
143 144 2.272146 GCCTTCAATGAGCCCGGA 59.728 61.111 0.73 0.00 0.00 5.14
144 145 2.830370 GGCCTTCAATGAGCCCGG 60.830 66.667 2.39 0.00 41.00 5.73
147 148 2.830370 CGGGGCCTTCAATGAGCC 60.830 66.667 0.84 5.07 46.37 4.70
148 149 3.521796 GCGGGGCCTTCAATGAGC 61.522 66.667 0.84 0.00 0.00 4.26
149 150 2.045045 TGCGGGGCCTTCAATGAG 60.045 61.111 0.84 0.00 0.00 2.90
150 151 2.045045 CTGCGGGGCCTTCAATGA 60.045 61.111 0.84 0.00 0.00 2.57
151 152 3.830192 GCTGCGGGGCCTTCAATG 61.830 66.667 0.84 0.00 0.00 2.82
152 153 4.365111 TGCTGCGGGGCCTTCAAT 62.365 61.111 0.84 0.00 0.00 2.57
160 161 2.203394 AATATGCCTGCTGCGGGG 60.203 61.111 27.80 17.10 45.60 5.73
161 162 3.036577 CAATATGCCTGCTGCGGG 58.963 61.111 23.28 23.28 45.60 6.13
162 163 2.333938 GCAATATGCCTGCTGCGG 59.666 61.111 0.26 0.26 45.60 5.69
172 173 0.588252 GGTGCTGCCTACGCAATATG 59.412 55.000 0.00 0.00 46.66 1.78
187 192 0.960861 CCTTTCTTTCCTCCGGGTGC 60.961 60.000 0.00 0.00 0.00 5.01
206 211 2.095161 TCGTCGCTTTCTCTCTTTCTCC 60.095 50.000 0.00 0.00 0.00 3.71
207 212 3.168193 CTCGTCGCTTTCTCTCTTTCTC 58.832 50.000 0.00 0.00 0.00 2.87
318 331 0.179166 ATATTGTGTTGGCTTGCGCG 60.179 50.000 0.00 0.00 36.88 6.86
407 427 2.146224 ATAGAAGGGTGGGGTGGGGT 62.146 60.000 0.00 0.00 0.00 4.95
421 441 6.663953 CGAGAAGGGGACAGGATATAATAGAA 59.336 42.308 0.00 0.00 0.00 2.10
474 494 0.474079 GGGGAAGGGGAGGGATAGAC 60.474 65.000 0.00 0.00 0.00 2.59
476 496 1.151788 GGGGGAAGGGGAGGGATAG 60.152 68.421 0.00 0.00 0.00 2.08
940 975 0.539438 CGAGAGAGATGGAGAGGGGG 60.539 65.000 0.00 0.00 0.00 5.40
949 984 3.023479 CAGCGCGCGAGAGAGATG 61.023 66.667 37.18 12.19 0.00 2.90
1161 1211 3.157252 GATCTGCAGGGGCTCGGA 61.157 66.667 15.13 0.00 41.91 4.55
1164 1214 1.301558 CATCGATCTGCAGGGGCTC 60.302 63.158 15.13 5.25 41.91 4.70
1170 1220 3.344215 GGCGGCATCGATCTGCAG 61.344 66.667 21.97 7.63 44.12 4.41
1317 1367 1.688884 GAAGAGCCTCCTGGGAGCT 60.689 63.158 10.92 10.58 40.69 4.09
1408 1460 2.930682 GCAAAGTTAGAGCTACGGGAAG 59.069 50.000 0.00 0.00 0.00 3.46
1409 1461 2.673043 CGCAAAGTTAGAGCTACGGGAA 60.673 50.000 0.00 0.00 0.00 3.97
1410 1462 1.135199 CGCAAAGTTAGAGCTACGGGA 60.135 52.381 0.00 0.00 0.00 5.14
1411 1463 1.278238 CGCAAAGTTAGAGCTACGGG 58.722 55.000 0.00 0.00 0.00 5.28
1584 1641 4.710423 ATAGCACAGAGACAGTACAGTG 57.290 45.455 0.00 0.00 0.00 3.66
1605 1662 4.526262 CAGATTCCAAACATTACCCACCAA 59.474 41.667 0.00 0.00 0.00 3.67
1755 1812 3.093717 ACCGTACACAGTTCTCACTTG 57.906 47.619 0.00 0.00 0.00 3.16
1806 1876 2.857592 AGCATCATTAAGCCTTTGCG 57.142 45.000 0.00 0.00 44.33 4.85
1872 1942 6.591935 TCCTAGCACATTATACTTCCCAAAG 58.408 40.000 0.00 0.00 38.54 2.77
1911 1981 3.743521 TCCTGCCATATATGACAAGCAC 58.256 45.455 14.54 0.00 0.00 4.40
1951 2028 8.669243 TGCAAAATGACAACATCGTACATAATA 58.331 29.630 0.00 0.00 35.50 0.98
2195 2278 3.792459 GCAAGAGCTTCAAGCATGCTATG 60.792 47.826 23.00 20.01 45.56 2.23
2267 2389 4.618489 GCAGAACATTCAGAAAAATGACCG 59.382 41.667 3.78 0.00 38.64 4.79
2309 2431 1.376812 GCCCACGGGAAAGACGAAT 60.377 57.895 6.21 0.00 37.50 3.34
2318 2441 1.847737 AGGTTAATATTGCCCACGGGA 59.152 47.619 6.21 0.00 37.50 5.14
2321 2444 2.020720 TGCAGGTTAATATTGCCCACG 58.979 47.619 0.00 0.00 37.03 4.94
2445 2753 8.425577 TGCTTTCTTAGAAACATATCAGCTAC 57.574 34.615 2.94 0.00 0.00 3.58
2588 2896 5.132502 TCTGCAAAGTGGATCAAGAAAGAA 58.867 37.500 0.00 0.00 0.00 2.52
2599 2907 2.886523 CACCTTCAATCTGCAAAGTGGA 59.113 45.455 0.00 0.00 0.00 4.02
2721 3029 3.878699 TCCCGTTTGTTTCACTAACTTCC 59.121 43.478 0.88 0.00 37.64 3.46
2739 3047 4.156008 CCTTTCTTCAAACTATGGTTCCCG 59.844 45.833 0.00 0.00 34.14 5.14
2897 3205 6.664816 AGCTTCATCCAGGTTTTCATAATTCA 59.335 34.615 0.00 0.00 0.00 2.57
2908 3216 2.093447 CGGTCTTAGCTTCATCCAGGTT 60.093 50.000 0.00 0.00 0.00 3.50
3052 3360 3.441922 GGGAAATCTGAGAAAGGAGCAAC 59.558 47.826 0.00 0.00 0.00 4.17
3101 3409 0.607489 CCTCTTGGAACCCTGCACAG 60.607 60.000 0.00 0.00 34.57 3.66
3150 3458 1.338105 GGCAAGATTTGAACCAAGCCC 60.338 52.381 0.00 0.00 34.94 5.19
3207 3515 4.256110 TGATACCATCTGACAAAGTGCTG 58.744 43.478 0.00 0.00 0.00 4.41
3421 3729 0.465097 GGGAGACATGCCATGGACTG 60.465 60.000 18.40 14.09 36.78 3.51
3618 3926 2.306341 ATGCAGTCTCTGGATGAACG 57.694 50.000 3.17 0.00 40.85 3.95
3818 4126 6.964807 TGCAGCATGAAAAGATAATGGTAT 57.035 33.333 0.00 0.00 39.69 2.73
4129 4437 3.614630 GCAGCTGACATATTTGCCAACAA 60.615 43.478 20.43 0.00 0.00 2.83
4262 4570 4.392940 ACCGGATGATGAAGAATCCAATC 58.607 43.478 9.46 0.00 42.21 2.67
4309 4617 6.545298 GGATCATCTTGCAACTCTTCCTTTAT 59.455 38.462 0.00 0.00 0.00 1.40
4311 4619 4.704057 GGATCATCTTGCAACTCTTCCTTT 59.296 41.667 0.00 0.00 0.00 3.11
4386 4694 3.421844 GTCCCCTGTGCAAAAGTATTCT 58.578 45.455 0.00 0.00 0.00 2.40
4458 4766 6.360370 AGTGGTGAAGTGAAGTGTGTATAT 57.640 37.500 0.00 0.00 0.00 0.86
4461 4769 4.439057 GAAGTGGTGAAGTGAAGTGTGTA 58.561 43.478 0.00 0.00 0.00 2.90
4587 4895 6.017934 TCACAACTTCACAAGATGTAGCTTTC 60.018 38.462 0.00 0.00 41.82 2.62
4710 5018 3.370315 CCTCCCCAAGATCTTCAGAGTTG 60.370 52.174 18.08 3.98 0.00 3.16
4791 5099 1.912043 AGAGCCCACATGTAGAGCTTT 59.088 47.619 15.26 8.88 32.97 3.51
4895 5203 7.064016 GTCTGCAAAAGTAAAACCACAAATCAA 59.936 33.333 0.00 0.00 0.00 2.57
4943 5252 2.845345 CCTTGGTCCAAGCCCCAGT 61.845 63.158 24.19 0.00 39.85 4.00
5012 5321 4.406972 ACTGGAGAGCTTCTATTACATGCA 59.593 41.667 0.00 0.00 0.00 3.96
5013 5322 4.954875 ACTGGAGAGCTTCTATTACATGC 58.045 43.478 0.00 0.00 0.00 4.06
5034 5343 3.063997 CAGGTGACTCAAAACACACAGAC 59.936 47.826 0.00 0.00 40.21 3.51
5062 5371 5.817296 TCCGTTCCATCTACATCAGAAAATG 59.183 40.000 0.00 0.00 36.67 2.32
5106 5415 6.183361 CCAACCATTCAGTAGATAATCCCTCA 60.183 42.308 0.00 0.00 0.00 3.86
5247 5556 6.127980 CGTCTCTGTCTTCAGGTAACATTAGA 60.128 42.308 0.00 0.00 41.59 2.10
5259 5568 3.421844 TCCTGATTCGTCTCTGTCTTCA 58.578 45.455 0.00 0.00 0.00 3.02
5271 5580 2.094286 AGTCTCAGTTGCTCCTGATTCG 60.094 50.000 6.39 0.00 40.53 3.34
5294 5603 3.058639 GCTTAGCAAAACTGAGTCCACAG 60.059 47.826 0.00 0.00 42.78 3.66
5301 5610 3.063180 CCTCATCGCTTAGCAAAACTGAG 59.937 47.826 4.70 8.01 35.12 3.35
5313 5622 1.271054 ACTTTCACTGCCTCATCGCTT 60.271 47.619 0.00 0.00 0.00 4.68
5349 5658 2.301346 CTTATCACCATGGGCAGAACC 58.699 52.381 18.09 0.00 37.93 3.62
5406 5715 2.668632 GGACAATCCTCGCCACCA 59.331 61.111 0.00 0.00 32.53 4.17
5548 5857 0.038526 ACCGCTACCTTTCTGTCACG 60.039 55.000 0.00 0.00 0.00 4.35
5566 5875 3.469739 TGAACCCTGACCGACTTTTTAC 58.530 45.455 0.00 0.00 0.00 2.01
5571 5880 1.371558 GCTGAACCCTGACCGACTT 59.628 57.895 0.00 0.00 0.00 3.01
5629 5938 7.172019 GGTGAATAAGAAACGGAGAACAGTAAA 59.828 37.037 0.00 0.00 0.00 2.01
5735 6044 2.224329 ACATACACAACACTACGGCCAA 60.224 45.455 2.24 0.00 0.00 4.52
5736 6045 1.345089 ACATACACAACACTACGGCCA 59.655 47.619 2.24 0.00 0.00 5.36
5737 6046 1.730064 CACATACACAACACTACGGCC 59.270 52.381 0.00 0.00 0.00 6.13
5738 6047 1.127951 GCACATACACAACACTACGGC 59.872 52.381 0.00 0.00 0.00 5.68
5739 6048 1.730064 GGCACATACACAACACTACGG 59.270 52.381 0.00 0.00 0.00 4.02
5740 6049 2.409012 TGGCACATACACAACACTACG 58.591 47.619 0.00 0.00 0.00 3.51
5741 6050 3.186409 CACTGGCACATACACAACACTAC 59.814 47.826 0.00 0.00 38.20 2.73
5742 6051 3.070302 TCACTGGCACATACACAACACTA 59.930 43.478 0.00 0.00 38.20 2.74
5743 6052 2.158827 TCACTGGCACATACACAACACT 60.159 45.455 0.00 0.00 38.20 3.55
5744 6053 2.217750 TCACTGGCACATACACAACAC 58.782 47.619 0.00 0.00 38.20 3.32
5745 6054 2.629336 TCACTGGCACATACACAACA 57.371 45.000 0.00 0.00 38.20 3.33
5746 6055 2.813754 ACATCACTGGCACATACACAAC 59.186 45.455 0.00 0.00 38.20 3.32
5847 6167 9.787532 CTTTCTTTCAGAAGTAACAAAACATCA 57.212 29.630 0.00 0.00 35.37 3.07
5881 6201 3.123620 CGAACAGGGCTCAGCAGC 61.124 66.667 0.00 0.00 46.06 5.25
5891 6211 4.034510 GCTTGGACATATTCTTCGAACAGG 59.965 45.833 0.00 0.00 0.00 4.00
5896 6216 6.925718 CAGAATAGCTTGGACATATTCTTCGA 59.074 38.462 0.00 0.00 41.31 3.71
5949 6269 5.221048 GCTGAACACAAAAGGTACAACAGAT 60.221 40.000 0.00 0.00 0.00 2.90
5953 6273 4.632538 AGCTGAACACAAAAGGTACAAC 57.367 40.909 0.00 0.00 0.00 3.32
6000 6330 6.540189 CCAAGGTCCAAGATCAGTAACTAATG 59.460 42.308 0.00 0.00 0.00 1.90
6064 6417 1.519455 GTGAGGCGCACGCTATCTT 60.519 57.895 15.36 0.00 41.60 2.40
6138 6491 1.344114 GAGGCCAAAGCAAATCCAACA 59.656 47.619 5.01 0.00 42.56 3.33
6188 6541 4.545706 TGGGATAAGCAGGCGCCG 62.546 66.667 23.20 17.35 39.83 6.46
6271 6635 1.295020 TCATCCCAAGGAATTCCGGT 58.705 50.000 18.82 8.34 42.08 5.28
6272 6636 2.024414 GTTCATCCCAAGGAATTCCGG 58.976 52.381 18.82 14.38 42.08 5.14
6357 6721 8.035394 TCCAAAGAGATAAACATATATCCGAGC 58.965 37.037 0.00 0.00 33.59 5.03
6374 6738 4.008074 AGCGAGTTTCATTCCAAAGAGA 57.992 40.909 0.00 0.00 0.00 3.10
6415 6792 4.081697 TCTCGATGCAGATAAAACTGGACA 60.082 41.667 0.00 0.00 40.64 4.02
6440 6817 0.329931 ATAACCCGGATGTGGTGCAA 59.670 50.000 0.73 0.00 35.88 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.