Multiple sequence alignment - TraesCS6B01G348800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G348800 chr6B 100.000 4294 0 0 1 4294 613297834 613302127 0.000000e+00 7930.0
1 TraesCS6B01G348800 chr6B 93.814 97 3 2 3595 3690 613301352 613301446 4.480000e-30 143.0
2 TraesCS6B01G348800 chr6B 93.814 97 3 2 3519 3613 613301428 613301523 4.480000e-30 143.0
3 TraesCS6B01G348800 chr6A 94.567 3092 121 24 517 3581 554515692 554518763 0.000000e+00 4735.0
4 TraesCS6B01G348800 chr6A 93.167 600 34 6 3700 4294 594313503 594314100 0.000000e+00 874.0
5 TraesCS6B01G348800 chr6A 91.262 515 35 8 8 518 554514899 554515407 0.000000e+00 693.0
6 TraesCS6B01G348800 chr6D 96.648 1611 46 5 1979 3585 408688790 408690396 0.000000e+00 2669.0
7 TraesCS6B01G348800 chr6D 94.150 1470 69 13 517 1977 408687243 408688704 0.000000e+00 2222.0
8 TraesCS6B01G348800 chr6D 91.132 530 30 7 1 517 408671942 408672467 0.000000e+00 702.0
9 TraesCS6B01G348800 chr6D 94.203 69 2 1 3595 3661 408690328 408690396 2.110000e-18 104.0
10 TraesCS6B01G348800 chr4B 98.655 595 8 0 3700 4294 69147515 69148109 0.000000e+00 1055.0
11 TraesCS6B01G348800 chr7A 97.315 596 16 0 3699 4294 383961911 383961316 0.000000e+00 1013.0
12 TraesCS6B01G348800 chr1B 95.286 594 28 0 3701 4294 130553312 130552719 0.000000e+00 942.0
13 TraesCS6B01G348800 chr1B 94.286 595 28 3 3700 4294 171012101 171011513 0.000000e+00 905.0
14 TraesCS6B01G348800 chr5B 94.581 609 29 4 3688 4294 155287139 155287745 0.000000e+00 939.0
15 TraesCS6B01G348800 chr7D 94.362 603 29 3 3695 4294 10753850 10754450 0.000000e+00 920.0
16 TraesCS6B01G348800 chr2D 94.305 597 30 3 3700 4294 7472716 7472122 0.000000e+00 911.0
17 TraesCS6B01G348800 chr4D 93.802 597 27 6 3700 4294 213332164 213332752 0.000000e+00 889.0
18 TraesCS6B01G348800 chr2B 85.135 74 6 5 1415 1485 298164041 298164112 2.140000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G348800 chr6B 613297834 613302127 4293 False 2738.666667 7930 95.876000 1 4294 3 chr6B.!!$F1 4293
1 TraesCS6B01G348800 chr6A 554514899 554518763 3864 False 2714.000000 4735 92.914500 8 3581 2 chr6A.!!$F2 3573
2 TraesCS6B01G348800 chr6A 594313503 594314100 597 False 874.000000 874 93.167000 3700 4294 1 chr6A.!!$F1 594
3 TraesCS6B01G348800 chr6D 408687243 408690396 3153 False 1665.000000 2669 95.000333 517 3661 3 chr6D.!!$F2 3144
4 TraesCS6B01G348800 chr6D 408671942 408672467 525 False 702.000000 702 91.132000 1 517 1 chr6D.!!$F1 516
5 TraesCS6B01G348800 chr4B 69147515 69148109 594 False 1055.000000 1055 98.655000 3700 4294 1 chr4B.!!$F1 594
6 TraesCS6B01G348800 chr7A 383961316 383961911 595 True 1013.000000 1013 97.315000 3699 4294 1 chr7A.!!$R1 595
7 TraesCS6B01G348800 chr1B 130552719 130553312 593 True 942.000000 942 95.286000 3701 4294 1 chr1B.!!$R1 593
8 TraesCS6B01G348800 chr1B 171011513 171012101 588 True 905.000000 905 94.286000 3700 4294 1 chr1B.!!$R2 594
9 TraesCS6B01G348800 chr5B 155287139 155287745 606 False 939.000000 939 94.581000 3688 4294 1 chr5B.!!$F1 606
10 TraesCS6B01G348800 chr7D 10753850 10754450 600 False 920.000000 920 94.362000 3695 4294 1 chr7D.!!$F1 599
11 TraesCS6B01G348800 chr2D 7472122 7472716 594 True 911.000000 911 94.305000 3700 4294 1 chr2D.!!$R1 594
12 TraesCS6B01G348800 chr4D 213332164 213332752 588 False 889.000000 889 93.802000 3700 4294 1 chr4D.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 500 0.105964 CGTGACACTGACCCAAAGGA 59.894 55.000 3.68 0.0 36.73 3.36 F
651 952 0.599204 AAATATCGCGCCACCCTACG 60.599 55.000 0.00 0.0 0.00 3.51 F
1201 1505 1.008309 GAGGTGAGCTATCCGACGC 60.008 63.158 0.00 0.0 0.00 5.19 F
1799 2119 0.252761 TCGCATCTTGCATCTTGGGA 59.747 50.000 0.00 6.1 45.36 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 1794 1.480545 ACACAAAGCTTGTTTGGTCCC 59.519 47.619 0.00 0.0 43.23 4.46 R
1635 1951 1.685077 CAGGAGCAGGAGGAGCAGA 60.685 63.158 0.00 0.0 0.00 4.26 R
2855 3265 0.995024 CCTCCCCATTGGTTGACTCT 59.005 55.000 1.20 0.0 34.77 3.24 R
3673 4090 0.030235 AAACGAACGAGGCCTTTTGC 59.970 50.000 6.77 0.0 40.16 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.041287 GCAGGTGTTAACAAAAGAAAGACC 58.959 41.667 10.51 3.95 36.94 3.85
38 39 5.126384 CAGGTGTTAACAAAAGAAAGACCCA 59.874 40.000 10.51 0.00 37.28 4.51
70 71 0.957395 CTTGAACGCACATCTGGGCT 60.957 55.000 2.53 0.00 43.67 5.19
123 135 2.430080 CTTGTTCGCGAGTGTGGTGC 62.430 60.000 9.59 0.00 0.00 5.01
125 137 4.980805 TTCGCGAGTGTGGTGCCC 62.981 66.667 9.59 0.00 0.00 5.36
236 250 0.801872 CGCAACGAACCATTCCATCA 59.198 50.000 0.00 0.00 0.00 3.07
244 258 3.313526 CGAACCATTCCATCAACCATCTC 59.686 47.826 0.00 0.00 0.00 2.75
247 261 1.262417 CATTCCATCAACCATCTCGCG 59.738 52.381 0.00 0.00 0.00 5.87
393 408 6.258507 AGCAAATCAAATTTTGTTCTCCACAC 59.741 34.615 8.89 0.00 38.55 3.82
394 409 6.036953 GCAAATCAAATTTTGTTCTCCACACA 59.963 34.615 8.89 0.00 38.55 3.72
416 431 3.003480 AGTTTTGCCATAAGACGAGAGC 58.997 45.455 0.00 0.00 0.00 4.09
483 499 0.884704 CCGTGACACTGACCCAAAGG 60.885 60.000 3.68 0.00 40.04 3.11
484 500 0.105964 CGTGACACTGACCCAAAGGA 59.894 55.000 3.68 0.00 36.73 3.36
505 521 2.254546 AACCATCTGCGTCAAAGACA 57.745 45.000 0.00 0.00 32.09 3.41
511 527 4.618489 CCATCTGCGTCAAAGACATTTTTC 59.382 41.667 0.00 0.00 32.09 2.29
554 855 2.994995 TCCCATGGCGACGTGTCT 60.995 61.111 10.18 0.00 46.26 3.41
611 912 2.531912 CGTGTGTCGTGATCTATTCTGC 59.468 50.000 0.00 0.00 34.52 4.26
647 948 1.857364 CGTAAATATCGCGCCACCC 59.143 57.895 0.00 0.00 0.00 4.61
651 952 0.599204 AAATATCGCGCCACCCTACG 60.599 55.000 0.00 0.00 0.00 3.51
892 1196 2.145905 GCAGCGCAACCGAAAATCG 61.146 57.895 11.47 0.00 40.07 3.34
1197 1501 1.068885 GTCATCGAGGTGAGCTATCCG 60.069 57.143 0.00 0.00 0.00 4.18
1198 1502 1.202770 TCATCGAGGTGAGCTATCCGA 60.203 52.381 0.00 0.00 0.00 4.55
1199 1503 1.068885 CATCGAGGTGAGCTATCCGAC 60.069 57.143 0.00 0.00 0.00 4.79
1200 1504 1.158484 TCGAGGTGAGCTATCCGACG 61.158 60.000 16.13 16.13 0.00 5.12
1201 1505 1.008309 GAGGTGAGCTATCCGACGC 60.008 63.158 0.00 0.00 0.00 5.19
1337 1646 6.094186 GGTTCTTCTATCCTGTCAATTGGTTC 59.906 42.308 5.42 0.00 0.00 3.62
1418 1727 2.026262 CCTTAGGACCAAGCCAGCTTTA 60.026 50.000 1.19 0.00 33.42 1.85
1438 1747 6.451292 TTTAGGGGTGTTCTTGTAATACCA 57.549 37.500 6.09 0.00 33.66 3.25
1439 1748 6.645884 TTAGGGGTGTTCTTGTAATACCAT 57.354 37.500 6.09 0.00 33.66 3.55
1577 1893 4.994852 TGTCCTGAAGTGTTACTATGTTGC 59.005 41.667 0.00 0.00 0.00 4.17
1581 1897 5.877012 CCTGAAGTGTTACTATGTTGCATCT 59.123 40.000 0.00 0.00 0.00 2.90
1618 1934 2.882137 TGTCCCTAAAAAGCCACTTTCG 59.118 45.455 0.00 0.00 31.99 3.46
1635 1951 7.145323 CCACTTTCGTATTTGTTTGGAATTCT 58.855 34.615 5.23 0.00 0.00 2.40
1653 1969 1.678598 CTCTGCTCCTCCTGCTCCTG 61.679 65.000 0.00 0.00 0.00 3.86
1712 2030 5.409211 TGCTATGTGTGTTGCATTAATTGG 58.591 37.500 0.00 0.00 0.00 3.16
1752 2072 3.209410 GTCACTTGCAGATAATCAGGGG 58.791 50.000 0.00 0.00 0.00 4.79
1799 2119 0.252761 TCGCATCTTGCATCTTGGGA 59.747 50.000 0.00 6.10 45.36 4.37
1802 2122 2.100252 CGCATCTTGCATCTTGGGATTT 59.900 45.455 0.00 0.00 45.36 2.17
1815 2135 6.433847 TCTTGGGATTTGTCTGACTTAGAA 57.566 37.500 9.51 0.00 37.12 2.10
1862 2184 5.189145 GGACTTAGTTTTCCATCCTGGTCTA 59.811 44.000 0.00 0.00 39.03 2.59
1955 2278 8.702438 CCATGTTGCATTTAAGTGAGTTAAAAG 58.298 33.333 9.06 6.38 42.58 2.27
2029 2438 0.519077 GTGCTCTAGTGCCTGTTTGC 59.481 55.000 13.91 0.00 0.00 3.68
2035 2444 1.133809 TAGTGCCTGTTTGCCCCTCT 61.134 55.000 0.00 0.00 0.00 3.69
2075 2484 8.204160 CACAAGGATATTCCATCTGTTGTACTA 58.796 37.037 0.00 0.00 39.61 1.82
2076 2485 8.204836 ACAAGGATATTCCATCTGTTGTACTAC 58.795 37.037 0.05 0.05 39.61 2.73
2077 2486 8.424918 CAAGGATATTCCATCTGTTGTACTACT 58.575 37.037 8.88 0.00 39.61 2.57
2480 2889 3.610040 TCAACAATGCGAGTGAGGTAT 57.390 42.857 0.00 0.00 0.00 2.73
2557 2966 6.293955 GGTGTGTAAATTGTTGCATACTGACT 60.294 38.462 0.00 0.00 40.01 3.41
2638 3048 2.229784 GCTTGCATGCTTACCAGAGTTT 59.770 45.455 20.33 0.00 0.00 2.66
2664 3074 6.351711 TCATTGTATTGAGCAACTGAGCTAT 58.648 36.000 0.00 0.00 46.75 2.97
2757 3167 2.025793 TGTGGTTGGAGTTTGGACTTGA 60.026 45.455 0.00 0.00 35.88 3.02
2770 3180 7.607250 AGTTTGGACTTGAAATTTGTTGTGTA 58.393 30.769 0.00 0.00 29.87 2.90
2801 3211 5.108517 TCTTTTGTGGTTGCATCTGTTTTC 58.891 37.500 0.00 0.00 0.00 2.29
2866 3276 3.324846 AGTGCATCAGTAGAGTCAACCAA 59.675 43.478 0.00 0.00 0.00 3.67
2969 3379 2.348218 GCGTTCGCCCGAAAATATACTG 60.348 50.000 4.52 0.00 35.75 2.74
2981 3391 5.696270 CGAAAATATACTGCAGCAGGATACA 59.304 40.000 27.02 10.90 39.73 2.29
3341 3751 9.249053 AGGGATATTATGTACAGTAGAGTGATG 57.751 37.037 0.33 0.00 0.00 3.07
3488 3898 5.921962 ACATATTCTTGGAGGAAAAAGGC 57.078 39.130 0.00 0.00 0.00 4.35
3567 3984 3.628032 GGATGCTAGAACTAGGGTTTTGC 59.372 47.826 10.30 0.00 35.58 3.68
3581 3998 0.316937 TTTTGCGCTTTGACTGCTCG 60.317 50.000 9.73 0.00 0.00 5.03
3582 3999 1.436195 TTTGCGCTTTGACTGCTCGT 61.436 50.000 9.73 0.00 0.00 4.18
3583 4000 1.436195 TTGCGCTTTGACTGCTCGTT 61.436 50.000 9.73 0.00 0.00 3.85
3584 4001 1.154580 GCGCTTTGACTGCTCGTTC 60.155 57.895 0.00 0.00 0.00 3.95
3586 4003 0.861837 CGCTTTGACTGCTCGTTCTT 59.138 50.000 0.00 0.00 0.00 2.52
3587 4004 1.136502 CGCTTTGACTGCTCGTTCTTC 60.137 52.381 0.00 0.00 0.00 2.87
3588 4005 1.867233 GCTTTGACTGCTCGTTCTTCA 59.133 47.619 0.00 0.00 0.00 3.02
3589 4006 2.096516 GCTTTGACTGCTCGTTCTTCAG 60.097 50.000 0.00 0.00 0.00 3.02
3590 4007 2.890808 TTGACTGCTCGTTCTTCAGT 57.109 45.000 0.00 0.00 43.06 3.41
3591 4008 2.140065 TGACTGCTCGTTCTTCAGTG 57.860 50.000 0.00 0.00 40.74 3.66
3592 4009 1.681264 TGACTGCTCGTTCTTCAGTGA 59.319 47.619 0.00 0.00 40.74 3.41
3593 4010 2.100749 TGACTGCTCGTTCTTCAGTGAA 59.899 45.455 5.25 5.25 40.74 3.18
3594 4011 3.243873 TGACTGCTCGTTCTTCAGTGAAT 60.244 43.478 5.91 0.00 40.74 2.57
3595 4012 3.062763 ACTGCTCGTTCTTCAGTGAATG 58.937 45.455 5.91 1.20 39.36 2.67
3596 4013 3.243873 ACTGCTCGTTCTTCAGTGAATGA 60.244 43.478 5.91 3.65 39.36 2.57
3598 4015 3.987807 CTCGTTCTTCAGTGAATGAGC 57.012 47.619 5.91 7.41 46.41 4.26
3599 4016 3.320626 CTCGTTCTTCAGTGAATGAGCA 58.679 45.455 5.91 0.51 46.41 4.26
3600 4017 3.930336 TCGTTCTTCAGTGAATGAGCAT 58.070 40.909 5.91 0.00 39.68 3.79
3601 4018 3.681417 TCGTTCTTCAGTGAATGAGCATG 59.319 43.478 5.91 0.00 39.68 4.06
3602 4019 3.181513 CGTTCTTCAGTGAATGAGCATGG 60.182 47.826 5.91 0.00 39.68 3.66
3603 4020 2.362736 TCTTCAGTGAATGAGCATGGC 58.637 47.619 5.91 0.00 39.68 4.40
3604 4021 1.404391 CTTCAGTGAATGAGCATGGCC 59.596 52.381 5.91 0.00 39.68 5.36
3605 4022 0.622136 TCAGTGAATGAGCATGGCCT 59.378 50.000 3.32 0.00 32.77 5.19
3606 4023 1.022735 CAGTGAATGAGCATGGCCTC 58.977 55.000 3.32 0.00 0.00 4.70
3607 4024 0.917533 AGTGAATGAGCATGGCCTCT 59.082 50.000 3.32 0.00 33.02 3.69
3608 4025 1.022735 GTGAATGAGCATGGCCTCTG 58.977 55.000 3.32 2.44 33.02 3.35
3609 4026 0.622136 TGAATGAGCATGGCCTCTGT 59.378 50.000 3.32 0.00 33.02 3.41
3610 4027 1.005097 TGAATGAGCATGGCCTCTGTT 59.995 47.619 3.32 0.00 33.02 3.16
3611 4028 1.674962 GAATGAGCATGGCCTCTGTTC 59.325 52.381 3.32 9.93 33.02 3.18
3612 4029 0.463295 ATGAGCATGGCCTCTGTTCG 60.463 55.000 3.32 0.00 33.02 3.95
3613 4030 1.219124 GAGCATGGCCTCTGTTCGA 59.781 57.895 3.32 0.00 0.00 3.71
3614 4031 0.391661 GAGCATGGCCTCTGTTCGAA 60.392 55.000 3.32 0.00 0.00 3.71
3615 4032 0.036732 AGCATGGCCTCTGTTCGAAA 59.963 50.000 3.32 0.00 0.00 3.46
3616 4033 0.449388 GCATGGCCTCTGTTCGAAAG 59.551 55.000 3.32 0.00 0.00 2.62
3617 4034 1.813513 CATGGCCTCTGTTCGAAAGT 58.186 50.000 3.32 0.00 0.00 2.66
3618 4035 2.154462 CATGGCCTCTGTTCGAAAGTT 58.846 47.619 3.32 0.00 0.00 2.66
3619 4036 1.593196 TGGCCTCTGTTCGAAAGTTG 58.407 50.000 3.32 0.00 0.00 3.16
3620 4037 1.140052 TGGCCTCTGTTCGAAAGTTGA 59.860 47.619 3.32 0.00 0.00 3.18
3621 4038 1.801178 GGCCTCTGTTCGAAAGTTGAG 59.199 52.381 0.00 5.30 0.00 3.02
3622 4039 1.801178 GCCTCTGTTCGAAAGTTGAGG 59.199 52.381 22.14 22.14 42.68 3.86
3623 4040 2.548067 GCCTCTGTTCGAAAGTTGAGGA 60.548 50.000 26.84 9.17 42.48 3.71
3624 4041 3.866449 GCCTCTGTTCGAAAGTTGAGGAT 60.866 47.826 26.84 0.00 42.48 3.24
3625 4042 3.681897 CCTCTGTTCGAAAGTTGAGGATG 59.318 47.826 22.05 5.38 42.48 3.51
3626 4043 3.067106 TCTGTTCGAAAGTTGAGGATGC 58.933 45.455 0.00 0.00 0.00 3.91
3627 4044 3.070018 CTGTTCGAAAGTTGAGGATGCT 58.930 45.455 0.00 0.00 0.00 3.79
3628 4045 4.021456 TCTGTTCGAAAGTTGAGGATGCTA 60.021 41.667 0.00 0.00 0.00 3.49
3629 4046 4.245660 TGTTCGAAAGTTGAGGATGCTAG 58.754 43.478 0.00 0.00 0.00 3.42
3630 4047 4.021456 TGTTCGAAAGTTGAGGATGCTAGA 60.021 41.667 0.00 0.00 0.00 2.43
3631 4048 4.801330 TCGAAAGTTGAGGATGCTAGAA 57.199 40.909 0.00 0.00 0.00 2.10
3632 4049 4.495422 TCGAAAGTTGAGGATGCTAGAAC 58.505 43.478 0.00 0.00 0.00 3.01
3633 4050 4.220821 TCGAAAGTTGAGGATGCTAGAACT 59.779 41.667 5.55 5.55 0.00 3.01
3634 4051 5.417894 TCGAAAGTTGAGGATGCTAGAACTA 59.582 40.000 10.44 0.00 0.00 2.24
3635 4052 5.746245 CGAAAGTTGAGGATGCTAGAACTAG 59.254 44.000 10.44 4.67 36.29 2.57
3636 4053 5.606348 AAGTTGAGGATGCTAGAACTAGG 57.394 43.478 10.44 0.00 33.87 3.02
3637 4054 3.964031 AGTTGAGGATGCTAGAACTAGGG 59.036 47.826 8.80 0.00 33.87 3.53
3638 4055 3.689872 TGAGGATGCTAGAACTAGGGT 57.310 47.619 10.30 0.00 33.87 4.34
3639 4056 3.995636 TGAGGATGCTAGAACTAGGGTT 58.004 45.455 10.30 0.00 38.52 4.11
3640 4057 4.362677 TGAGGATGCTAGAACTAGGGTTT 58.637 43.478 10.30 0.00 35.58 3.27
3641 4058 4.783227 TGAGGATGCTAGAACTAGGGTTTT 59.217 41.667 10.30 0.00 35.58 2.43
3642 4059 5.104259 AGGATGCTAGAACTAGGGTTTTG 57.896 43.478 10.30 0.00 35.58 2.44
3643 4060 3.628032 GGATGCTAGAACTAGGGTTTTGC 59.372 47.826 10.30 0.00 35.58 3.68
3644 4061 2.695359 TGCTAGAACTAGGGTTTTGCG 58.305 47.619 10.30 0.00 35.58 4.85
3645 4062 1.397343 GCTAGAACTAGGGTTTTGCGC 59.603 52.381 0.00 0.00 35.58 6.09
3646 4063 2.935676 GCTAGAACTAGGGTTTTGCGCT 60.936 50.000 9.73 0.00 43.25 5.92
3647 4064 2.271944 AGAACTAGGGTTTTGCGCTT 57.728 45.000 9.73 0.00 40.99 4.68
3648 4065 2.583143 AGAACTAGGGTTTTGCGCTTT 58.417 42.857 9.73 0.00 40.99 3.51
3649 4066 2.293399 AGAACTAGGGTTTTGCGCTTTG 59.707 45.455 9.73 0.00 40.99 2.77
3650 4067 1.975660 ACTAGGGTTTTGCGCTTTGA 58.024 45.000 9.73 0.00 40.99 2.69
3651 4068 1.607148 ACTAGGGTTTTGCGCTTTGAC 59.393 47.619 9.73 1.89 40.99 3.18
3652 4069 1.880027 CTAGGGTTTTGCGCTTTGACT 59.120 47.619 9.73 2.53 40.99 3.41
3653 4070 0.385390 AGGGTTTTGCGCTTTGACTG 59.615 50.000 9.73 0.00 37.01 3.51
3654 4071 1.215014 GGGTTTTGCGCTTTGACTGC 61.215 55.000 9.73 0.00 0.00 4.40
3655 4072 0.249031 GGTTTTGCGCTTTGACTGCT 60.249 50.000 9.73 0.00 0.00 4.24
3656 4073 1.123655 GTTTTGCGCTTTGACTGCTC 58.876 50.000 9.73 0.00 0.00 4.26
3657 4074 0.316937 TTTTGCGCTTTGACTGCTCG 60.317 50.000 9.73 0.00 0.00 5.03
3658 4075 1.436195 TTTGCGCTTTGACTGCTCGT 61.436 50.000 9.73 0.00 0.00 4.18
3659 4076 1.436195 TTGCGCTTTGACTGCTCGTT 61.436 50.000 9.73 0.00 0.00 3.85
3660 4077 1.154580 GCGCTTTGACTGCTCGTTC 60.155 57.895 0.00 0.00 0.00 3.95
3661 4078 1.560860 GCGCTTTGACTGCTCGTTCT 61.561 55.000 0.00 0.00 0.00 3.01
3662 4079 0.861837 CGCTTTGACTGCTCGTTCTT 59.138 50.000 0.00 0.00 0.00 2.52
3663 4080 1.136502 CGCTTTGACTGCTCGTTCTTC 60.137 52.381 0.00 0.00 0.00 2.87
3664 4081 1.867233 GCTTTGACTGCTCGTTCTTCA 59.133 47.619 0.00 0.00 0.00 3.02
3665 4082 2.096516 GCTTTGACTGCTCGTTCTTCAG 60.097 50.000 0.00 0.00 0.00 3.02
3666 4083 2.890808 TTGACTGCTCGTTCTTCAGT 57.109 45.000 0.00 0.00 43.06 3.41
3667 4084 2.140065 TGACTGCTCGTTCTTCAGTG 57.860 50.000 0.00 0.00 40.74 3.66
3668 4085 1.681264 TGACTGCTCGTTCTTCAGTGA 59.319 47.619 0.00 0.00 40.74 3.41
3669 4086 2.100749 TGACTGCTCGTTCTTCAGTGAA 59.899 45.455 5.25 5.25 40.74 3.18
3670 4087 3.243873 TGACTGCTCGTTCTTCAGTGAAT 60.244 43.478 5.91 0.00 40.74 2.57
3671 4088 3.321497 ACTGCTCGTTCTTCAGTGAATC 58.679 45.455 5.91 0.00 39.36 2.52
3672 4089 3.243873 ACTGCTCGTTCTTCAGTGAATCA 60.244 43.478 5.91 0.00 39.36 2.57
3673 4090 3.320626 TGCTCGTTCTTCAGTGAATCAG 58.679 45.455 5.91 0.00 0.00 2.90
3674 4091 2.093467 GCTCGTTCTTCAGTGAATCAGC 59.907 50.000 5.91 6.05 0.00 4.26
3675 4092 3.320626 CTCGTTCTTCAGTGAATCAGCA 58.679 45.455 5.91 0.00 0.00 4.41
3676 4093 3.727726 TCGTTCTTCAGTGAATCAGCAA 58.272 40.909 5.91 0.00 0.00 3.91
3677 4094 4.126437 TCGTTCTTCAGTGAATCAGCAAA 58.874 39.130 5.91 0.00 0.00 3.68
3678 4095 4.574421 TCGTTCTTCAGTGAATCAGCAAAA 59.426 37.500 5.91 0.00 0.00 2.44
3679 4096 4.908156 CGTTCTTCAGTGAATCAGCAAAAG 59.092 41.667 5.91 0.00 0.00 2.27
3680 4097 5.218139 GTTCTTCAGTGAATCAGCAAAAGG 58.782 41.667 5.91 0.00 0.00 3.11
3681 4098 3.254166 TCTTCAGTGAATCAGCAAAAGGC 59.746 43.478 5.91 0.00 45.30 4.35
3682 4099 1.888512 TCAGTGAATCAGCAAAAGGCC 59.111 47.619 0.00 0.00 46.50 5.19
3683 4100 1.891150 CAGTGAATCAGCAAAAGGCCT 59.109 47.619 0.00 0.00 46.50 5.19
3684 4101 2.094854 CAGTGAATCAGCAAAAGGCCTC 60.095 50.000 5.23 0.00 46.50 4.70
3685 4102 1.135575 GTGAATCAGCAAAAGGCCTCG 60.136 52.381 5.23 0.00 46.50 4.63
3686 4103 1.168714 GAATCAGCAAAAGGCCTCGT 58.831 50.000 5.23 0.00 46.50 4.18
3687 4104 1.541588 GAATCAGCAAAAGGCCTCGTT 59.458 47.619 5.23 0.00 46.50 3.85
3688 4105 1.168714 ATCAGCAAAAGGCCTCGTTC 58.831 50.000 5.23 0.00 46.50 3.95
3689 4106 1.207593 CAGCAAAAGGCCTCGTTCG 59.792 57.895 5.23 0.29 46.50 3.95
3690 4107 1.227853 AGCAAAAGGCCTCGTTCGT 60.228 52.632 5.23 0.00 46.50 3.85
3691 4108 0.818040 AGCAAAAGGCCTCGTTCGTT 60.818 50.000 5.23 0.00 46.50 3.85
3692 4109 0.030235 GCAAAAGGCCTCGTTCGTTT 59.970 50.000 5.23 0.00 36.11 3.60
3693 4110 1.924629 GCAAAAGGCCTCGTTCGTTTC 60.925 52.381 5.23 0.00 36.11 2.78
3885 4303 5.102953 ACTACTACATGCATGTGGAATGT 57.897 39.130 39.65 30.06 41.19 2.71
4007 4428 0.313672 TTGGCGTTTCTTGTGGCATC 59.686 50.000 0.00 0.00 38.03 3.91
4050 4471 4.246458 TGACCCTTTTGTTTTGGTTTTCG 58.754 39.130 0.00 0.00 0.00 3.46
4051 4472 4.247258 GACCCTTTTGTTTTGGTTTTCGT 58.753 39.130 0.00 0.00 0.00 3.85
4102 4523 6.639671 TCAATGAAACGTCAAAGTTTTTGG 57.360 33.333 0.00 0.00 43.54 3.28
4261 4682 9.462606 ACCCAAGATAAAATCGAATTTAGAAGT 57.537 29.630 11.12 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.039818 TGTTAACACCTGCGGTTTCA 57.960 45.000 3.59 0.00 31.02 2.69
15 16 5.265989 TGGGTCTTTCTTTTGTTAACACCT 58.734 37.500 8.07 0.00 0.00 4.00
70 71 2.235016 ACTGGCCGATAAAAACAAGCA 58.765 42.857 0.00 0.00 0.00 3.91
125 137 2.815211 CTCACATGGCCCGTCACG 60.815 66.667 0.00 0.00 0.00 4.35
138 150 1.211457 ACCAATCATCTCTGGCCTCAC 59.789 52.381 3.32 0.00 36.03 3.51
146 158 0.747255 CGGACGGACCAATCATCTCT 59.253 55.000 0.00 0.00 38.90 3.10
247 261 1.930567 TAAGATTTCGTACGGCCAGC 58.069 50.000 16.52 2.37 0.00 4.85
253 267 7.891782 TGACTTGCTTATTAAGATTTCGTACG 58.108 34.615 9.53 9.53 0.00 3.67
393 408 4.670221 GCTCTCGTCTTATGGCAAAACTTG 60.670 45.833 0.00 0.00 0.00 3.16
394 409 3.437049 GCTCTCGTCTTATGGCAAAACTT 59.563 43.478 0.00 0.00 0.00 2.66
442 457 6.266103 ACGGATAATTGGACGTAGGAGAATAA 59.734 38.462 0.00 0.00 37.85 1.40
483 499 3.003275 TGTCTTTGACGCAGATGGTTTTC 59.997 43.478 0.00 0.00 34.95 2.29
484 500 2.948979 TGTCTTTGACGCAGATGGTTTT 59.051 40.909 0.00 0.00 34.95 2.43
569 870 0.106894 GGACCTATGAAGAAGGCCGG 59.893 60.000 0.00 0.00 37.67 6.13
630 931 2.064014 GTAGGGTGGCGCGATATTTAC 58.936 52.381 12.10 0.49 0.00 2.01
664 965 3.041940 GGTGACGCGGTTGGTCTG 61.042 66.667 12.47 0.00 35.45 3.51
691 992 4.530857 GAGGATGACGTGCGGGGG 62.531 72.222 0.00 0.00 0.00 5.40
787 1088 1.590792 CGGGTCGCTTTATCGGGTC 60.591 63.158 0.00 0.00 0.00 4.46
951 1255 1.153989 CTAGATCTGGGCTCCGGGA 59.846 63.158 5.18 0.00 0.00 5.14
1031 1335 3.535962 GGAGGAGGAGGAGCAGCG 61.536 72.222 0.00 0.00 0.00 5.18
1038 1342 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1337 1646 2.172851 ACAGGTTGCCAAAATGCATG 57.827 45.000 0.00 0.00 41.70 4.06
1356 1665 7.541091 GCTTAACGCATATACAGCTTATCAGTA 59.459 37.037 0.00 0.00 38.92 2.74
1418 1727 5.530176 AATGGTATTACAAGAACACCCCT 57.470 39.130 0.00 0.00 0.00 4.79
1438 1747 6.698766 GCTGCGAAATCCATTGATTAGAAAAT 59.301 34.615 0.00 0.00 40.34 1.82
1439 1748 6.035843 GCTGCGAAATCCATTGATTAGAAAA 58.964 36.000 0.00 0.00 40.34 2.29
1485 1794 1.480545 ACACAAAGCTTGTTTGGTCCC 59.519 47.619 0.00 0.00 43.23 4.46
1495 1809 6.128035 GGAATTTCAAACCAAACACAAAGCTT 60.128 34.615 0.00 0.00 0.00 3.74
1618 1934 6.151817 AGGAGCAGAGAATTCCAAACAAATAC 59.848 38.462 0.65 0.00 33.32 1.89
1635 1951 1.685077 CAGGAGCAGGAGGAGCAGA 60.685 63.158 0.00 0.00 0.00 4.26
1752 2072 6.743575 ATTGGAAGAAGCACACAATAGTAC 57.256 37.500 0.00 0.00 30.65 2.73
1832 2154 6.004574 AGGATGGAAAACTAAGTCCAAGTTC 58.995 40.000 0.00 0.00 46.78 3.01
1932 2255 9.944663 CTACTTTTAACTCACTTAAATGCAACA 57.055 29.630 0.00 0.00 34.84 3.33
2001 2408 4.937620 CAGGCACTAGAGCACAATAAAAGA 59.062 41.667 14.31 0.00 36.02 2.52
2015 2424 4.002797 GGGGCAAACAGGCACTAG 57.997 61.111 0.00 0.00 44.23 2.57
2029 2438 2.774234 TGCTAATGAAGGAAGAGAGGGG 59.226 50.000 0.00 0.00 0.00 4.79
2035 2444 4.908601 TCCTTGTGCTAATGAAGGAAGA 57.091 40.909 0.00 0.00 41.86 2.87
2075 2484 6.107901 AGAGACAGCTTCAATTCTACAAGT 57.892 37.500 0.00 0.00 0.00 3.16
2076 2485 8.539770 TTAAGAGACAGCTTCAATTCTACAAG 57.460 34.615 0.00 0.00 0.00 3.16
2077 2486 8.902540 TTTAAGAGACAGCTTCAATTCTACAA 57.097 30.769 0.00 0.00 0.00 2.41
2357 2766 9.113838 CACTCCATCATAAAACAAATAGTAGCT 57.886 33.333 0.00 0.00 0.00 3.32
2358 2767 8.893727 ACACTCCATCATAAAACAAATAGTAGC 58.106 33.333 0.00 0.00 0.00 3.58
2480 2889 3.616560 GCTTAACAGTTCGAGGTCCATGA 60.617 47.826 0.00 0.00 0.00 3.07
2595 3005 5.810074 AGCAAAACTACAACACAATCCAAAC 59.190 36.000 0.00 0.00 0.00 2.93
2602 3012 4.179926 TGCAAGCAAAACTACAACACAA 57.820 36.364 0.00 0.00 0.00 3.33
2638 3048 5.474532 AGCTCAGTTGCTCAATACAATGAAA 59.525 36.000 0.00 0.00 39.34 2.69
2679 3089 5.269189 TGTCTCATACCACAAGATAGGTGA 58.731 41.667 0.00 0.00 38.87 4.02
2770 3180 8.573885 CAGATGCAACCACAAAAGATATCATAT 58.426 33.333 5.32 0.00 0.00 1.78
2801 3211 3.689161 TGACCGTCAGCAAATCAATTAGG 59.311 43.478 0.00 0.00 0.00 2.69
2855 3265 0.995024 CCTCCCCATTGGTTGACTCT 59.005 55.000 1.20 0.00 34.77 3.24
2969 3379 4.081752 AGTGCTAGATATGTATCCTGCTGC 60.082 45.833 0.00 0.00 34.61 5.25
2981 3391 2.971330 AGAAGCTGCCAGTGCTAGATAT 59.029 45.455 0.00 0.00 40.22 1.63
3341 3751 4.996122 CAGATTCTTGGTGCTCATATCCTC 59.004 45.833 0.00 0.00 0.00 3.71
3567 3984 0.861837 AAGAACGAGCAGTCAAAGCG 59.138 50.000 0.00 0.00 37.01 4.68
3581 3998 3.427233 GCCATGCTCATTCACTGAAGAAC 60.427 47.826 0.00 0.00 32.14 3.01
3582 3999 2.751259 GCCATGCTCATTCACTGAAGAA 59.249 45.455 0.00 0.00 32.14 2.52
3583 4000 2.362736 GCCATGCTCATTCACTGAAGA 58.637 47.619 0.00 0.00 32.14 2.87
3584 4001 1.404391 GGCCATGCTCATTCACTGAAG 59.596 52.381 0.00 0.00 32.14 3.02
3586 4003 0.622136 AGGCCATGCTCATTCACTGA 59.378 50.000 5.01 0.00 0.00 3.41
3587 4004 1.022735 GAGGCCATGCTCATTCACTG 58.977 55.000 5.01 0.00 0.00 3.66
3588 4005 0.917533 AGAGGCCATGCTCATTCACT 59.082 50.000 5.01 0.00 0.00 3.41
3589 4006 1.022735 CAGAGGCCATGCTCATTCAC 58.977 55.000 5.01 0.00 0.00 3.18
3590 4007 0.622136 ACAGAGGCCATGCTCATTCA 59.378 50.000 5.01 0.00 0.00 2.57
3591 4008 1.674962 GAACAGAGGCCATGCTCATTC 59.325 52.381 5.01 0.00 0.00 2.67
3592 4009 1.760192 GAACAGAGGCCATGCTCATT 58.240 50.000 5.01 0.00 0.00 2.57
3593 4010 0.463295 CGAACAGAGGCCATGCTCAT 60.463 55.000 5.01 0.00 0.00 2.90
3594 4011 1.078918 CGAACAGAGGCCATGCTCA 60.079 57.895 5.01 0.00 0.00 4.26
3595 4012 0.391661 TTCGAACAGAGGCCATGCTC 60.392 55.000 5.01 3.20 0.00 4.26
3596 4013 0.036732 TTTCGAACAGAGGCCATGCT 59.963 50.000 5.01 0.00 0.00 3.79
3597 4014 0.449388 CTTTCGAACAGAGGCCATGC 59.551 55.000 5.01 0.00 0.00 4.06
3598 4015 1.813513 ACTTTCGAACAGAGGCCATG 58.186 50.000 5.01 5.87 0.00 3.66
3599 4016 2.154462 CAACTTTCGAACAGAGGCCAT 58.846 47.619 5.01 0.00 0.00 4.40
3600 4017 1.140052 TCAACTTTCGAACAGAGGCCA 59.860 47.619 5.01 0.00 0.00 5.36
3601 4018 1.801178 CTCAACTTTCGAACAGAGGCC 59.199 52.381 0.00 0.00 0.00 5.19
3602 4019 1.801178 CCTCAACTTTCGAACAGAGGC 59.199 52.381 16.61 0.00 36.58 4.70
3603 4020 3.386768 TCCTCAACTTTCGAACAGAGG 57.613 47.619 20.22 20.22 43.05 3.69
3604 4021 3.124297 GCATCCTCAACTTTCGAACAGAG 59.876 47.826 0.00 2.95 0.00 3.35
3605 4022 3.067106 GCATCCTCAACTTTCGAACAGA 58.933 45.455 0.00 0.00 0.00 3.41
3606 4023 3.070018 AGCATCCTCAACTTTCGAACAG 58.930 45.455 0.00 1.46 0.00 3.16
3607 4024 3.126001 AGCATCCTCAACTTTCGAACA 57.874 42.857 0.00 0.00 0.00 3.18
3608 4025 4.495422 TCTAGCATCCTCAACTTTCGAAC 58.505 43.478 0.00 0.00 0.00 3.95
3609 4026 4.801330 TCTAGCATCCTCAACTTTCGAA 57.199 40.909 0.00 0.00 0.00 3.71
3610 4027 4.220821 AGTTCTAGCATCCTCAACTTTCGA 59.779 41.667 0.00 0.00 0.00 3.71
3611 4028 4.499183 AGTTCTAGCATCCTCAACTTTCG 58.501 43.478 0.00 0.00 0.00 3.46
3612 4029 6.045955 CCTAGTTCTAGCATCCTCAACTTTC 58.954 44.000 1.68 0.00 30.77 2.62
3613 4030 5.104735 CCCTAGTTCTAGCATCCTCAACTTT 60.105 44.000 1.68 0.00 30.77 2.66
3614 4031 4.407296 CCCTAGTTCTAGCATCCTCAACTT 59.593 45.833 1.68 0.00 30.77 2.66
3615 4032 3.964031 CCCTAGTTCTAGCATCCTCAACT 59.036 47.826 1.68 0.00 32.19 3.16
3616 4033 3.707102 ACCCTAGTTCTAGCATCCTCAAC 59.293 47.826 1.68 0.00 0.00 3.18
3617 4034 3.995636 ACCCTAGTTCTAGCATCCTCAA 58.004 45.455 1.68 0.00 0.00 3.02
3618 4035 3.689872 ACCCTAGTTCTAGCATCCTCA 57.310 47.619 1.68 0.00 0.00 3.86
3619 4036 5.119694 CAAAACCCTAGTTCTAGCATCCTC 58.880 45.833 1.68 0.00 34.19 3.71
3620 4037 4.626529 GCAAAACCCTAGTTCTAGCATCCT 60.627 45.833 1.68 0.00 34.19 3.24
3621 4038 3.628032 GCAAAACCCTAGTTCTAGCATCC 59.372 47.826 1.68 0.00 34.19 3.51
3622 4039 3.309954 CGCAAAACCCTAGTTCTAGCATC 59.690 47.826 1.68 0.00 34.19 3.91
3623 4040 3.270877 CGCAAAACCCTAGTTCTAGCAT 58.729 45.455 1.68 0.00 34.19 3.79
3624 4041 2.695359 CGCAAAACCCTAGTTCTAGCA 58.305 47.619 1.68 0.00 34.19 3.49
3625 4042 1.397343 GCGCAAAACCCTAGTTCTAGC 59.603 52.381 0.30 0.00 34.19 3.42
3626 4043 2.973945 AGCGCAAAACCCTAGTTCTAG 58.026 47.619 11.47 0.31 34.19 2.43
3627 4044 3.412237 AAGCGCAAAACCCTAGTTCTA 57.588 42.857 11.47 0.00 34.19 2.10
3628 4045 2.271944 AAGCGCAAAACCCTAGTTCT 57.728 45.000 11.47 0.00 34.19 3.01
3629 4046 2.292292 TCAAAGCGCAAAACCCTAGTTC 59.708 45.455 11.47 0.00 34.19 3.01
3630 4047 2.034179 GTCAAAGCGCAAAACCCTAGTT 59.966 45.455 11.47 0.00 38.03 2.24
3631 4048 1.607148 GTCAAAGCGCAAAACCCTAGT 59.393 47.619 11.47 0.00 0.00 2.57
3632 4049 1.880027 AGTCAAAGCGCAAAACCCTAG 59.120 47.619 11.47 0.00 0.00 3.02
3633 4050 1.606668 CAGTCAAAGCGCAAAACCCTA 59.393 47.619 11.47 0.00 0.00 3.53
3634 4051 0.385390 CAGTCAAAGCGCAAAACCCT 59.615 50.000 11.47 0.00 0.00 4.34
3635 4052 1.215014 GCAGTCAAAGCGCAAAACCC 61.215 55.000 11.47 0.00 0.00 4.11
3636 4053 0.249031 AGCAGTCAAAGCGCAAAACC 60.249 50.000 11.47 0.00 37.01 3.27
3637 4054 1.123655 GAGCAGTCAAAGCGCAAAAC 58.876 50.000 11.47 1.68 37.01 2.43
3638 4055 0.316937 CGAGCAGTCAAAGCGCAAAA 60.317 50.000 11.47 0.00 37.01 2.44
3639 4056 1.279539 CGAGCAGTCAAAGCGCAAA 59.720 52.632 11.47 0.00 37.01 3.68
3640 4057 1.436195 AACGAGCAGTCAAAGCGCAA 61.436 50.000 11.47 0.00 37.01 4.85
3641 4058 1.831389 GAACGAGCAGTCAAAGCGCA 61.831 55.000 11.47 0.00 37.01 6.09
3642 4059 1.154580 GAACGAGCAGTCAAAGCGC 60.155 57.895 0.00 0.00 37.01 5.92
3643 4060 0.861837 AAGAACGAGCAGTCAAAGCG 59.138 50.000 0.00 0.00 37.01 4.68
3644 4061 1.867233 TGAAGAACGAGCAGTCAAAGC 59.133 47.619 0.00 0.00 0.00 3.51
3645 4062 3.060003 CACTGAAGAACGAGCAGTCAAAG 60.060 47.826 0.00 0.00 40.63 2.77
3646 4063 2.866156 CACTGAAGAACGAGCAGTCAAA 59.134 45.455 0.00 0.00 40.63 2.69
3647 4064 2.100749 TCACTGAAGAACGAGCAGTCAA 59.899 45.455 0.00 0.00 40.63 3.18
3648 4065 1.681264 TCACTGAAGAACGAGCAGTCA 59.319 47.619 0.00 0.00 40.63 3.41
3649 4066 2.423926 TCACTGAAGAACGAGCAGTC 57.576 50.000 0.00 0.00 40.63 3.51
3650 4067 2.890808 TTCACTGAAGAACGAGCAGT 57.109 45.000 0.00 0.00 43.16 4.40
3651 4068 3.320626 TGATTCACTGAAGAACGAGCAG 58.679 45.455 0.00 0.00 35.81 4.24
3652 4069 3.320626 CTGATTCACTGAAGAACGAGCA 58.679 45.455 0.00 0.00 0.00 4.26
3653 4070 2.093467 GCTGATTCACTGAAGAACGAGC 59.907 50.000 0.00 0.00 31.73 5.03
3654 4071 3.320626 TGCTGATTCACTGAAGAACGAG 58.679 45.455 0.00 0.00 0.00 4.18
3655 4072 3.385193 TGCTGATTCACTGAAGAACGA 57.615 42.857 0.00 0.00 0.00 3.85
3656 4073 4.472691 TTTGCTGATTCACTGAAGAACG 57.527 40.909 0.00 0.00 0.00 3.95
3657 4074 5.218139 CCTTTTGCTGATTCACTGAAGAAC 58.782 41.667 0.00 0.00 0.00 3.01
3658 4075 4.261741 GCCTTTTGCTGATTCACTGAAGAA 60.262 41.667 0.00 0.00 36.87 2.52
3659 4076 3.254166 GCCTTTTGCTGATTCACTGAAGA 59.746 43.478 0.00 0.00 36.87 2.87
3660 4077 3.572584 GCCTTTTGCTGATTCACTGAAG 58.427 45.455 0.00 0.00 36.87 3.02
3661 4078 2.297033 GGCCTTTTGCTGATTCACTGAA 59.703 45.455 0.00 0.00 40.92 3.02
3662 4079 1.888512 GGCCTTTTGCTGATTCACTGA 59.111 47.619 0.00 0.00 40.92 3.41
3663 4080 1.891150 AGGCCTTTTGCTGATTCACTG 59.109 47.619 0.00 0.00 40.92 3.66
3664 4081 2.165998 GAGGCCTTTTGCTGATTCACT 58.834 47.619 6.77 0.00 40.92 3.41
3665 4082 1.135575 CGAGGCCTTTTGCTGATTCAC 60.136 52.381 6.77 0.00 40.92 3.18
3666 4083 1.167851 CGAGGCCTTTTGCTGATTCA 58.832 50.000 6.77 0.00 40.92 2.57
3667 4084 1.168714 ACGAGGCCTTTTGCTGATTC 58.831 50.000 6.77 0.00 40.92 2.52
3668 4085 1.541588 GAACGAGGCCTTTTGCTGATT 59.458 47.619 6.77 0.00 40.92 2.57
3669 4086 1.168714 GAACGAGGCCTTTTGCTGAT 58.831 50.000 6.77 0.00 40.92 2.90
3670 4087 1.227999 CGAACGAGGCCTTTTGCTGA 61.228 55.000 6.77 0.00 40.92 4.26
3671 4088 1.207593 CGAACGAGGCCTTTTGCTG 59.792 57.895 6.77 0.00 40.92 4.41
3672 4089 0.818040 AACGAACGAGGCCTTTTGCT 60.818 50.000 6.77 0.00 40.92 3.91
3673 4090 0.030235 AAACGAACGAGGCCTTTTGC 59.970 50.000 6.77 0.00 40.16 3.68
3674 4091 1.602377 AGAAACGAACGAGGCCTTTTG 59.398 47.619 6.77 4.55 0.00 2.44
3675 4092 1.963172 AGAAACGAACGAGGCCTTTT 58.037 45.000 6.77 2.84 0.00 2.27
3676 4093 1.871676 GAAGAAACGAACGAGGCCTTT 59.128 47.619 6.77 0.00 0.00 3.11
3677 4094 1.070289 AGAAGAAACGAACGAGGCCTT 59.930 47.619 6.77 0.00 0.00 4.35
3678 4095 0.680061 AGAAGAAACGAACGAGGCCT 59.320 50.000 3.86 3.86 0.00 5.19
3679 4096 0.790814 CAGAAGAAACGAACGAGGCC 59.209 55.000 0.00 0.00 0.00 5.19
3680 4097 1.499049 ACAGAAGAAACGAACGAGGC 58.501 50.000 0.14 0.00 0.00 4.70
3681 4098 3.898529 AGTACAGAAGAAACGAACGAGG 58.101 45.455 0.14 0.00 0.00 4.63
3682 4099 5.687828 ACTAGTACAGAAGAAACGAACGAG 58.312 41.667 0.00 0.00 0.00 4.18
3683 4100 5.679734 ACTAGTACAGAAGAAACGAACGA 57.320 39.130 0.00 0.00 0.00 3.85
3684 4101 6.032251 GCTTACTAGTACAGAAGAAACGAACG 59.968 42.308 0.91 0.00 0.00 3.95
3685 4102 6.032251 CGCTTACTAGTACAGAAGAAACGAAC 59.968 42.308 0.91 0.00 0.00 3.95
3686 4103 6.082338 CGCTTACTAGTACAGAAGAAACGAA 58.918 40.000 0.91 0.00 0.00 3.85
3687 4104 5.180117 ACGCTTACTAGTACAGAAGAAACGA 59.820 40.000 0.91 0.00 0.00 3.85
3688 4105 5.283247 CACGCTTACTAGTACAGAAGAAACG 59.717 44.000 0.91 1.74 0.00 3.60
3689 4106 5.060693 GCACGCTTACTAGTACAGAAGAAAC 59.939 44.000 0.91 0.00 0.00 2.78
3690 4107 5.159209 GCACGCTTACTAGTACAGAAGAAA 58.841 41.667 0.91 0.00 0.00 2.52
3691 4108 4.216902 TGCACGCTTACTAGTACAGAAGAA 59.783 41.667 0.91 0.00 0.00 2.52
3692 4109 3.754850 TGCACGCTTACTAGTACAGAAGA 59.245 43.478 0.91 0.00 0.00 2.87
3693 4110 3.852536 GTGCACGCTTACTAGTACAGAAG 59.147 47.826 0.00 0.15 0.00 2.85
3885 4303 1.487482 CGCGGCGATGAAGAGATAAA 58.513 50.000 19.16 0.00 0.00 1.40
4007 4428 0.966920 ACCCACTCTAGAACACCGTG 59.033 55.000 0.00 0.00 0.00 4.94
4050 4471 6.150140 AGCAGAAGATTGTCCAGTTAATCAAC 59.850 38.462 0.00 0.00 36.11 3.18
4051 4472 6.240894 AGCAGAAGATTGTCCAGTTAATCAA 58.759 36.000 0.00 0.00 36.11 2.57
4102 4523 6.142817 AGTGCAAATAAATTCAGACACGAAC 58.857 36.000 0.00 0.00 32.22 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.