AutoCloner

Multiple sequence alignment - TraesCS6B01G348200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G348200	chr6B	100.000	4138	0	0	1	4138	613112804	613108667	0.000000e+00	7642.0
1	TraesCS6B01G348200	chr6D	93.647	4077	153	40	1	4042	408652170	408648165	0.000000e+00	5997.0
2	TraesCS6B01G348200	chr6D	81.686	688	77	25	1050	1719	450820072	450820728	1.020000e-145	527.0
3	TraesCS6B01G348200	chr6D	80.847	496	43	17	2054	2527	450821044	450821509	3.960000e-90	342.0
4	TraesCS6B01G348200	chr6D	97.183	71	2	0	4068	4138	408646893	408646823	2.020000e-23	121.0
5	TraesCS6B01G348200	chr6D	85.227	88	10	3	1986	2071	450820945	450821031	2.050000e-13	87.9
6	TraesCS6B01G348200	chr6A	95.425	2907	93	17	1261	4138	554459223	554456328	0.000000e+00	4595.0
7	TraesCS6B01G348200	chr6A	92.749	1186	39	12	1	1169	554460369	554459214	0.000000e+00	1670.0
8	TraesCS6B01G348200	chr6A	79.406	976	135	45	2565	3512	596363645	596364582	2.720000e-176	628.0
9	TraesCS6B01G348200	chr6A	78.636	557	60	24	929	1469	596340606	596341119	8.640000e-82	315.0
10	TraesCS6B01G348200	chr6A	88.934	244	16	3	2273	2513	596354783	596355018	1.460000e-74	291.0
11	TraesCS6B01G348200	chr6A	88.646	229	15	5	2268	2493	596341417	596341637	6.820000e-68	268.0
12	TraesCS6B01G348200	chr6A	97.436	39	1	0	1846	1884	56248958	56248996	2.670000e-07	67.6
13	TraesCS6B01G348200	chr6A	100.000	32	0	0	2496	2527	596341654	596341685	4.470000e-05	60.2
14	TraesCS6B01G348200	chr3D	78.875	942	116	51	1902	2783	335629033	335629951	1.000000e-155	560.0
15	TraesCS6B01G348200	chr3D	82.338	402	46	21	1313	1707	335628609	335628992	3.990000e-85	326.0
16	TraesCS6B01G348200	chr3D	89.394	198	16	4	2944	3140	335630235	335630428	1.150000e-60	244.0
17	TraesCS6B01G348200	chr3D	94.521	73	4	0	4065	4137	392357643	392357715	3.380000e-21	113.0
18	TraesCS6B01G348200	chr3D	83.529	85	13	1	1797	1880	370115798	370115714	1.230000e-10	78.7
19	TraesCS6B01G348200	chr3D	93.333	45	3	0	1739	1783	335629067	335629111	2.670000e-07	67.6
20	TraesCS6B01G348200	chr3B	78.335	937	125	42	1901	2774	434048919	434049840	6.090000e-148	534.0
21	TraesCS6B01G348200	chr3B	82.090	402	47	21	1313	1707	434048498	434048881	1.860000e-83	320.0
22	TraesCS6B01G348200	chr3B	88.776	196	17	4	2944	3138	434050169	434050360	6.920000e-58	235.0
23	TraesCS6B01G348200	chr3B	96.226	53	2	0	1736	1788	820053735	820053683	2.050000e-13	87.9
24	TraesCS6B01G348200	chr3B	91.228	57	3	1	1739	1793	434048954	434049010	4.440000e-10	76.8
25	TraesCS6B01G348200	chr3A	76.825	945	120	44	1901	2783	453602004	453602911	1.370000e-119	440.0
26	TraesCS6B01G348200	chr3A	81.841	402	48	19	1313	1707	453601583	453601966	8.640000e-82	315.0
27	TraesCS6B01G348200	chr3A	89.394	198	16	4	2944	3140	453603194	453603387	1.150000e-60	244.0
28	TraesCS6B01G348200	chr3A	84.524	84	13	0	1797	1880	12862174	12862257	2.650000e-12	84.2
29	TraesCS6B01G348200	chr3A	83.529	85	13	1	1797	1880	491189510	491189426	1.230000e-10	78.7
30	TraesCS6B01G348200	chr3A	90.909	55	5	0	1739	1793	453602039	453602093	1.600000e-09	75.0
31	TraesCS6B01G348200	chr7D	95.890	73	3	0	4065	4137	105507660	105507732	7.270000e-23	119.0
32	TraesCS6B01G348200	chr7D	97.222	36	1	0	1846	1881	66954777	66954812	1.240000e-05	62.1
33	TraesCS6B01G348200	chr5A	94.595	74	4	0	4065	4138	545714519	545714592	9.400000e-22	115.0
34	TraesCS6B01G348200	chr2A	94.595	74	4	0	4065	4138	726993235	726993308	9.400000e-22	115.0
35	TraesCS6B01G348200	chr1B	95.775	71	3	0	4068	4138	181305597	181305527	9.400000e-22	115.0
36	TraesCS6B01G348200	chrUn	93.243	74	5	0	4065	4138	158061995	158062068	4.370000e-20	110.0
37	TraesCS6B01G348200	chr4A	93.243	74	5	0	4065	4138	111078887	111078960	4.370000e-20	110.0
38	TraesCS6B01G348200	chr4B	88.506	87	9	1	1796	1882	450478141	450478056	2.030000e-18	104.0
39	TraesCS6B01G348200	chr5D	90.000	70	3	3	1710	1777	322774027	322773960	2.050000e-13	87.9
40	TraesCS6B01G348200	chr5B	83.871	62	10	0	1819	1880	480296653	480296714	4.470000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G348200	chr6B	613108667	613112804	4137	True	7642.000000	7642	100.000000	1	4138	1	chr6B.!!$R1	4137
1	TraesCS6B01G348200	chr6D	408646823	408652170	5347	True	3059.000000	5997	95.415000	1	4138	2	chr6D.!!$R1	4137
2	TraesCS6B01G348200	chr6D	450820072	450821509	1437	False	318.966667	527	82.586667	1050	2527	3	chr6D.!!$F1	1477
3	TraesCS6B01G348200	chr6A	554456328	554460369	4041	True	3132.500000	4595	94.087000	1	4138	2	chr6A.!!$R1	4137
4	TraesCS6B01G348200	chr6A	596363645	596364582	937	False	628.000000	628	79.406000	2565	3512	1	chr6A.!!$F3	947
5	TraesCS6B01G348200	chr6A	596340606	596341685	1079	False	214.400000	315	89.094000	929	2527	3	chr6A.!!$F4	1598
6	TraesCS6B01G348200	chr3D	335628609	335630428	1819	False	299.400000	560	85.985000	1313	3140	4	chr3D.!!$F2	1827
7	TraesCS6B01G348200	chr3B	434048498	434050360	1862	False	291.450000	534	85.107250	1313	3138	4	chr3B.!!$F1	1825
8	TraesCS6B01G348200	chr3A	453601583	453603387	1804	False	268.500000	440	84.742250	1313	3140	4	chr3A.!!$F2	1827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
958	975	0.035915	GAAGCTTCACCTGGAGTCCC	60.036	60.0	21.67	0.0	0.0	4.46	F
1212	1346	0.535553	CCCCCGTTCGTTTTTCTCCA	60.536	55.0	0.00	0.0	0.0	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2833	3335	1.528076	ACGACAATGGCCAACTGCA	60.528	52.632	10.96	0.00	43.89	4.41	R
3176	3689	1.401761	TGGAGCGGCATATGCAATTT	58.598	45.000	28.07	11.04	44.36	1.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
133	134	1.762222	GCGCGAGAATATGGTTGCGT	61.762	55.000	12.10	0.00	46.55	5.24
172	173	1.743995	GTCGGCGCCACCAATAAGT	60.744	57.895	28.98	0.00	39.03	2.24
598	599	2.764128	TCCATGGGGACGAGAGCC	60.764	66.667	13.02	0.00	38.64	4.70
678	679	0.689745	CCGTCCTCCATTGGGGTCTA	60.690	60.000	0.96	0.00	38.11	2.59
679	680	1.424638	CGTCCTCCATTGGGGTCTAT	58.575	55.000	0.96	0.00	38.11	1.98
766	768	4.329545	GGCCAGAACTGTGCGGGA	62.330	66.667	9.35	0.00	0.00	5.14
784	788	1.378124	GACGAAGGGAGAGTCGGGAG	61.378	65.000	0.00	0.00	41.56	4.30
787	791	2.226149	GAAGGGAGAGTCGGGAGGGA	62.226	65.000	0.00	0.00	0.00	4.20
790	794	1.306970	GGAGAGTCGGGAGGGAAGA	59.693	63.158	0.00	0.00	0.00	2.87
792	796	0.753848	GAGAGTCGGGAGGGAAGAGG	60.754	65.000	0.00	0.00	0.00	3.69
793	797	1.000612	GAGTCGGGAGGGAAGAGGT	59.999	63.158	0.00	0.00	0.00	3.85
795	799	2.038975	TCGGGAGGGAAGAGGTGG	59.961	66.667	0.00	0.00	0.00	4.61
796	800	3.787001	CGGGAGGGAAGAGGTGGC	61.787	72.222	0.00	0.00	0.00	5.01
797	801	2.285743	GGGAGGGAAGAGGTGGCT	60.286	66.667	0.00	0.00	0.00	4.75
814	822	1.689258	GGCTTGGCCCTATGGAATGTT	60.689	52.381	0.00	0.00	44.06	2.71
846	863	2.478894	ACGTCCATGAAAGCGTACTTTG	59.521	45.455	0.00	0.00	46.20	2.77
900	917	2.169352	CCGTTCCCTCATCTCTGAACAT	59.831	50.000	0.00	0.00	37.53	2.71
957	974	0.980423	AGAAGCTTCACCTGGAGTCC	59.020	55.000	27.57	0.73	0.00	3.85
958	975	0.035915	GAAGCTTCACCTGGAGTCCC	60.036	60.000	21.67	0.00	0.00	4.46
959	976	0.768221	AAGCTTCACCTGGAGTCCCA	60.768	55.000	6.74	0.00	40.95	4.37
960	977	1.003233	GCTTCACCTGGAGTCCCAC	60.003	63.158	6.74	0.00	37.58	4.61
961	978	1.484444	GCTTCACCTGGAGTCCCACT	61.484	60.000	6.74	0.00	37.58	4.00
1172	1306	0.897863	CTCGATCTAGGCCTCCTGGG	60.898	65.000	9.68	0.00	34.61	4.45
1212	1346	0.535553	CCCCCGTTCGTTTTTCTCCA	60.536	55.000	0.00	0.00	0.00	3.86
1228	1362	4.487714	TCTCCATTCCTGCTTACGAATT	57.512	40.909	0.00	0.00	0.00	2.17
1245	1379	4.692135	CGAATTCGTGTCTCTCTTTGTTG	58.308	43.478	19.67	0.00	34.11	3.33
1246	1380	4.209288	CGAATTCGTGTCTCTCTTTGTTGT	59.791	41.667	19.67	0.00	34.11	3.32
1247	1381	5.610552	CGAATTCGTGTCTCTCTTTGTTGTC	60.611	44.000	19.67	0.00	34.11	3.18
1248	1382	3.793797	TCGTGTCTCTCTTTGTTGTCA	57.206	42.857	0.00	0.00	0.00	3.58
1249	1383	4.322080	TCGTGTCTCTCTTTGTTGTCAT	57.678	40.909	0.00	0.00	0.00	3.06
1250	1384	5.447624	TCGTGTCTCTCTTTGTTGTCATA	57.552	39.130	0.00	0.00	0.00	2.15
1251	1385	6.025749	TCGTGTCTCTCTTTGTTGTCATAT	57.974	37.500	0.00	0.00	0.00	1.78
1273	1407	1.742308	TCATTACTAGGCCATCCCCC	58.258	55.000	5.01	0.00	0.00	5.40
1301	1435	3.254024	TTCCGAGCTTGAGGCCACC	62.254	63.158	5.01	0.00	43.05	4.61
1453	1596	3.932089	GCTAGAGCAGGTTTTCTTCTCTG	59.068	47.826	0.00	0.00	41.59	3.35
1555	1705	1.186200	GGGAGGTGAAAAATGAGGGC	58.814	55.000	0.00	0.00	0.00	5.19
1666	1817	3.491342	AGAAGGTCTCCTTTCTTTTGCC	58.509	45.455	2.48	0.00	44.82	4.52
1671	1822	2.554462	GTCTCCTTTCTTTTGCCCTGTC	59.446	50.000	0.00	0.00	0.00	3.51
1837	2039	5.510671	ACACAAGACGCTTTTTGATACAAG	58.489	37.500	0.16	0.00	0.00	3.16
1895	2098	7.382898	GGATGGAGTATTATCAAAGAGGAGTC	58.617	42.308	0.00	0.00	0.00	3.36
1928	2131	3.952323	TGTCCTACAGTCCTAAATCCTCG	59.048	47.826	0.00	0.00	0.00	4.63
2190	2431	9.543783	CTCATATATCCATGGTGTCATAATCAG	57.456	37.037	12.58	0.00	31.33	2.90
2383	2642	6.039616	TGTTTCAGTAACAATCTTGGCAAAC	58.960	36.000	0.00	0.00	43.58	2.93
2628	2935	5.057149	CCTCCGTTGATTTCCGAGAATAAT	58.943	41.667	0.00	0.00	0.00	1.28
2634	2941	4.058124	TGATTTCCGAGAATAATGGAGCG	58.942	43.478	0.00	0.00	32.39	5.03
2672	2979	7.226059	AGATTATTAAATCCCTTGGACCTGT	57.774	36.000	0.00	0.00	42.20	4.00
2708	3025	8.622157	TGTTTTGTTGTATTCTATTCCGAACAA	58.378	29.630	0.00	0.00	31.75	2.83
2738	3062	9.727859	TGGTTTACTAGTTATTCATTTGCTGTA	57.272	29.630	0.00	0.00	0.00	2.74
3145	3658	1.324005	GCCCAGGAGTAGCTCTCGTT	61.324	60.000	0.00	0.00	43.60	3.85
3212	3725	3.600388	CTCCAAAAGCAGGTACTTCGAT	58.400	45.455	0.00	0.00	34.60	3.59
3218	3731	1.135083	AGCAGGTACTTCGATCGTTGG	60.135	52.381	15.94	8.87	34.60	3.77
3323	3838	7.715265	TTCTGTTCTTCTGAATATATTCCGC	57.285	36.000	20.29	4.34	35.97	5.54
3391	3906	3.407698	TGATGTAGCGTGTCACCAAAAT	58.592	40.909	0.00	0.00	0.00	1.82
3536	4054	5.218885	CACAGTTTGAAGAAACAACACACA	58.781	37.500	0.00	0.00	43.51	3.72
3666	4184	0.322008	GAAGTGGTGAGAAGGGCCTG	60.322	60.000	6.92	0.00	0.00	4.85
3758	4276	3.262420	GTCGACCATGACTAAGCATGTT	58.738	45.455	3.51	0.00	43.16	2.71
3776	4294	7.001073	AGCATGTTAGGGAGAAAGGATAATTC	58.999	38.462	0.00	0.00	0.00	2.17
3986	4505	6.584185	AAATTATACACGGAAAAGTTGCCT	57.416	33.333	0.00	0.00	0.00	4.75
4066	5831	6.130298	TGCGTTTCCTATTCATTGGTTATG	57.870	37.500	0.00	0.00	35.45	1.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
133	134	0.322816	AGGCCAACTACCTCGTCGTA	60.323	55.000	5.01	0.00	28.76	3.43
166	167	0.179056	CCGCCGTCATCCCACTTATT	60.179	55.000	0.00	0.00	0.00	1.40
562	563	3.775654	CAGGACGAGGACCAGGCC	61.776	72.222	3.78	3.78	35.21	5.19
661	662	1.421646	CCATAGACCCCAATGGAGGAC	59.578	57.143	12.74	7.33	44.62	3.85
678	679	3.466791	CTCGCCGCATCCTTCCCAT	62.467	63.158	0.00	0.00	0.00	4.00
679	680	4.161295	CTCGCCGCATCCTTCCCA	62.161	66.667	0.00	0.00	0.00	4.37
766	768	1.378778	CTCCCGACTCTCCCTTCGT	60.379	63.158	0.00	0.00	33.23	3.85
784	788	2.361737	GCCAAGCCACCTCTTCCC	60.362	66.667	0.00	0.00	0.00	3.97
795	799	1.780503	AACATTCCATAGGGCCAAGC	58.219	50.000	6.18	0.00	0.00	4.01
796	800	4.383010	GGAAAAACATTCCATAGGGCCAAG	60.383	45.833	6.18	0.00	38.45	3.61
797	801	3.517500	GGAAAAACATTCCATAGGGCCAA	59.482	43.478	6.18	0.00	38.45	4.52
827	844	2.414161	GGCAAAGTACGCTTTCATGGAC	60.414	50.000	0.00	0.00	42.54	4.02
829	846	1.812571	AGGCAAAGTACGCTTTCATGG	59.187	47.619	0.00	0.00	42.54	3.66
919	936	8.457238	AGCTTCTATGTTCAGAGTTTTTCTTT	57.543	30.769	0.00	0.00	32.41	2.52
921	938	7.716998	TGAAGCTTCTATGTTCAGAGTTTTTCT	59.283	33.333	26.09	0.00	36.25	2.52
922	939	7.800847	GTGAAGCTTCTATGTTCAGAGTTTTTC	59.199	37.037	26.09	0.00	30.94	2.29
923	940	7.255277	GGTGAAGCTTCTATGTTCAGAGTTTTT	60.255	37.037	26.09	0.00	30.94	1.94
924	941	6.205658	GGTGAAGCTTCTATGTTCAGAGTTTT	59.794	38.462	26.09	0.00	30.94	2.43
925	942	5.703130	GGTGAAGCTTCTATGTTCAGAGTTT	59.297	40.000	26.09	0.00	30.94	2.66
926	943	5.012561	AGGTGAAGCTTCTATGTTCAGAGTT	59.987	40.000	26.09	0.00	30.94	3.01
980	1001	2.492090	CTGAGCTTCGGGGAGACG	59.508	66.667	0.00	0.00	0.00	4.18
993	1014	2.946988	TACGCCCCTCCATCCCTGAG	62.947	65.000	0.00	0.00	0.00	3.35
994	1015	3.016613	TACGCCCCTCCATCCCTGA	62.017	63.158	0.00	0.00	0.00	3.86
1172	1306	1.078567	CAGTTCAGGAGCCAGGAGC	60.079	63.158	0.00	0.00	44.25	4.70
1173	1307	1.078567	GCAGTTCAGGAGCCAGGAG	60.079	63.158	0.00	0.00	0.00	3.69
1174	1308	1.842920	TGCAGTTCAGGAGCCAGGA	60.843	57.895	0.00	0.00	0.00	3.86
1175	1309	1.673665	GTGCAGTTCAGGAGCCAGG	60.674	63.158	0.00	0.00	0.00	4.45
1228	1362	3.793797	TGACAACAAAGAGAGACACGA	57.206	42.857	0.00	0.00	0.00	4.35
1240	1374	9.502091	GGCCTAGTAATGATAATATGACAACAA	57.498	33.333	0.00	0.00	0.00	2.83
1242	1376	9.672673	ATGGCCTAGTAATGATAATATGACAAC	57.327	33.333	3.32	0.00	0.00	3.32
1243	1377	9.890629	GATGGCCTAGTAATGATAATATGACAA	57.109	33.333	3.32	0.00	0.00	3.18
1245	1379	7.934120	GGGATGGCCTAGTAATGATAATATGAC	59.066	40.741	3.32	0.00	0.00	3.06
1246	1380	7.072454	GGGGATGGCCTAGTAATGATAATATGA	59.928	40.741	3.32	0.00	0.00	2.15
1247	1381	7.227156	GGGGATGGCCTAGTAATGATAATATG	58.773	42.308	3.32	0.00	0.00	1.78
1248	1382	6.332901	GGGGGATGGCCTAGTAATGATAATAT	59.667	42.308	3.32	0.00	0.00	1.28
1249	1383	5.670361	GGGGGATGGCCTAGTAATGATAATA	59.330	44.000	3.32	0.00	0.00	0.98
1250	1384	4.478686	GGGGGATGGCCTAGTAATGATAAT	59.521	45.833	3.32	0.00	0.00	1.28
1251	1385	3.850173	GGGGGATGGCCTAGTAATGATAA	59.150	47.826	3.32	0.00	0.00	1.75
1258	1392	0.544357	CATCGGGGGATGGCCTAGTA	60.544	60.000	3.32	0.00	0.00	1.82
1273	1407	3.918220	GCTCGGAAGCGCACATCG	61.918	66.667	11.47	8.20	42.44	3.84
1286	1420	3.376935	ATCGGTGGCCTCAAGCTCG	62.377	63.158	3.32	0.00	43.05	5.03
1301	1435	2.879002	ACAGGACTGCATAGTGATCG	57.121	50.000	0.00	0.00	37.25	3.69
1449	1592	4.378774	ACTATAGCAAAGCATGAGCAGAG	58.621	43.478	0.00	0.00	45.49	3.35
1481	1627	5.878116	TCAACATAACCGGTCTTAATCAAGG	59.122	40.000	8.04	0.00	32.22	3.61
1555	1705	3.495193	CCTGTGCAATTTCAGAATGTCG	58.505	45.455	3.73	0.00	37.40	4.35
1666	1817	6.118170	AGACAATGTGAATATGAAGGACAGG	58.882	40.000	0.00	0.00	0.00	4.00
1671	1822	7.993101	ACAATGAGACAATGTGAATATGAAGG	58.007	34.615	0.00	0.00	0.00	3.46
1720	1922	1.675641	AATGCGGTGAGAACAGGGC	60.676	57.895	0.00	0.00	0.00	5.19
2190	2431	7.431376	GGTAGCAAAGTTTGAACAAAAGTAGTC	59.569	37.037	19.82	0.00	30.90	2.59
2556	2857	9.750783	AAGTAGTGAGATAAGTACTCCAGTTTA	57.249	33.333	0.00	0.00	35.66	2.01
2628	2935	3.639561	TCTACTATAACAATGCCGCTCCA	59.360	43.478	0.00	0.00	0.00	3.86
2708	3025	9.855021	GCAAATGAATAACTAGTAAACCATTGT	57.145	29.630	0.00	0.00	0.00	2.71
2738	3062	2.766263	TCAGCCCGTCAGAGTTCATAAT	59.234	45.455	0.00	0.00	0.00	1.28
2833	3335	1.528076	ACGACAATGGCCAACTGCA	60.528	52.632	10.96	0.00	43.89	4.41
2894	3402	2.972625	TGTATGGCTCGTTCCTCTTTG	58.027	47.619	0.00	0.00	0.00	2.77
2951	3459	3.955771	TTTTTAGCACCAGTTGACGAC	57.044	42.857	0.00	0.00	0.00	4.34
3176	3689	1.401761	TGGAGCGGCATATGCAATTT	58.598	45.000	28.07	11.04	44.36	1.82
3212	3725	1.161563	GGCGAAGTGAAACCCAACGA	61.162	55.000	0.00	0.00	37.80	3.85
3218	3731	3.000815	TCACAGGCGAAGTGAAACC	57.999	52.632	7.78	0.00	42.57	3.27
3323	3838	1.372128	GCAAGCCGCCTTCAAACTG	60.372	57.895	0.00	0.00	32.94	3.16
3391	3906	9.528489	AAAACAGATCCTAAAAAGGCTACAATA	57.472	29.630	0.00	0.00	0.00	1.90
3510	4028	5.219633	GTGTTGTTTCTTCAAACTGTGTGT	58.780	37.500	0.00	0.00	42.29	3.72
3511	4029	5.116983	GTGTGTTGTTTCTTCAAACTGTGTG	59.883	40.000	0.00	0.00	42.29	3.82
3536	4054	8.451908	AAATGCTCTAGTAACAAAACTCAGTT	57.548	30.769	0.00	0.00	0.00	3.16
3603	4121	6.501805	TGCAAGGTAATCTATGTAGGATCCAT	59.498	38.462	15.82	0.88	0.00	3.41
3626	4144	0.179119	GTTCTTGCCCATCAGCATGC	60.179	55.000	10.51	10.51	43.64	4.06
3758	4276	3.640029	ACGCGAATTATCCTTTCTCCCTA	59.360	43.478	15.93	0.00	0.00	3.53
3776	4294	7.962934	TTTCATTCATAAATTCCTAAACGCG	57.037	32.000	3.53	3.53	0.00	6.01
4043	4562	5.883115	TCATAACCAATGAATAGGAAACGCA	59.117	36.000	0.00	0.00	41.75	5.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.