Multiple sequence alignment - TraesCS6B01G348100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G348100 chr6B 100.000 6842 0 0 1 6842 612865257 612858416 0.000000e+00 12635.0
1 TraesCS6B01G348100 chr6B 83.029 383 63 2 6461 6842 612849441 612849060 5.080000e-91 346.0
2 TraesCS6B01G348100 chr6D 91.070 2094 147 28 4774 6842 408216546 408214468 0.000000e+00 2795.0
3 TraesCS6B01G348100 chr6D 87.137 1928 82 53 111 1950 408223357 408221508 0.000000e+00 2034.0
4 TraesCS6B01G348100 chr6D 88.713 1329 69 38 1945 3243 408221465 408220188 0.000000e+00 1548.0
5 TraesCS6B01G348100 chr6D 83.234 835 51 33 3920 4713 408219271 408218485 0.000000e+00 684.0
6 TraesCS6B01G348100 chr6D 84.967 459 44 16 3477 3921 408219783 408219336 6.300000e-120 442.0
7 TraesCS6B01G348100 chr6D 83.924 367 55 4 6478 6842 408184684 408184320 1.410000e-91 348.0
8 TraesCS6B01G348100 chr6D 91.875 160 10 1 3267 3423 408220134 408219975 3.210000e-53 220.0
9 TraesCS6B01G348100 chr6D 100.000 31 0 0 56 86 408223374 408223344 2.670000e-04 58.4
10 TraesCS6B01G348100 chr6A 85.747 2603 176 92 774 3261 554310013 554307491 0.000000e+00 2571.0
11 TraesCS6B01G348100 chr6A 83.834 1831 165 73 3278 5056 554307505 554305754 0.000000e+00 1620.0
12 TraesCS6B01G348100 chr6A 90.625 1184 91 15 5665 6842 554305121 554303952 0.000000e+00 1554.0
13 TraesCS6B01G348100 chr6A 86.885 610 64 14 5128 5730 554305713 554305113 0.000000e+00 669.0
14 TraesCS6B01G348100 chr6A 84.146 574 33 29 111 660 554310724 554310185 2.850000e-138 503.0
15 TraesCS6B01G348100 chr6A 82.821 390 63 4 6455 6842 553927432 553927045 5.080000e-91 346.0
16 TraesCS6B01G348100 chr6A 88.679 53 3 3 2 52 3348546 3348495 2.060000e-05 62.1
17 TraesCS6B01G348100 chr6A 88.235 51 5 1 2 51 53544848 53544898 7.410000e-05 60.2
18 TraesCS6B01G348100 chr2A 86.628 172 23 0 6558 6729 448293477 448293648 2.520000e-44 191.0
19 TraesCS6B01G348100 chr2B 82.488 217 34 4 6558 6772 481900655 481900441 3.260000e-43 187.0
20 TraesCS6B01G348100 chr2B 87.500 56 6 1 2 56 157985467 157985522 5.730000e-06 63.9
21 TraesCS6B01G348100 chr2D 82.500 200 35 0 6569 6768 338330386 338330585 7.050000e-40 176.0
22 TraesCS6B01G348100 chr2D 81.429 210 35 4 6564 6771 406262198 406261991 1.180000e-37 169.0
23 TraesCS6B01G348100 chr3D 92.754 69 5 0 3703 3771 318773623 318773691 4.370000e-17 100.0
24 TraesCS6B01G348100 chr3D 85.455 55 7 1 2 55 116336178 116336124 1.000000e-03 56.5
25 TraesCS6B01G348100 chr4B 92.308 52 3 1 2 52 57426494 57426545 9.520000e-09 73.1
26 TraesCS6B01G348100 chr3B 89.286 56 5 1 2 56 701223688 701223743 1.230000e-07 69.4
27 TraesCS6B01G348100 chr5A 87.500 56 5 2 2 56 520690528 520690582 5.730000e-06 63.9
28 TraesCS6B01G348100 chr1B 90.698 43 3 1 15 56 670960583 670960625 1.000000e-03 56.5
29 TraesCS6B01G348100 chr4A 96.875 32 1 0 25 56 242880128 242880159 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G348100 chr6B 612858416 612865257 6841 True 12635.000000 12635 100.000000 1 6842 1 chr6B.!!$R2 6841
1 TraesCS6B01G348100 chr6D 408214468 408223374 8906 True 1111.628571 2795 89.570857 56 6842 7 chr6D.!!$R2 6786
2 TraesCS6B01G348100 chr6A 554303952 554310724 6772 True 1383.400000 2571 86.247400 111 6842 5 chr6A.!!$R3 6731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.248907 GCTAATCTCGCCGCAGTACA 60.249 55.0 0.00 0.0 0.0 2.90 F
1152 1262 0.041312 CGCTGACCAAGGTTTTCGTG 60.041 55.0 0.00 0.0 0.0 4.35 F
1663 1792 0.249322 GCTTGATTAGGGCTCGCGTA 60.249 55.0 5.77 0.0 0.0 4.42 F
2293 2514 0.323087 GAATGCGGTGTAAAGGGGGT 60.323 55.0 0.00 0.0 0.0 4.95 F
3076 3349 0.107848 AACGTAGTAGGGCACATGGC 60.108 55.0 0.00 0.0 45.0 4.40 F
4477 5093 0.751277 TATTGGAATGGGCAGCGTGG 60.751 55.0 0.00 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 1807 0.108424 CACGCAAGGAGGAGGAGAAG 60.108 60.000 0.00 0.00 46.39 2.85 R
3047 3310 0.179145 CTACTACGTTGTGCCGGGAG 60.179 60.000 13.03 0.00 0.00 4.30 R
3049 3312 1.153706 CCTACTACGTTGTGCCGGG 60.154 63.158 13.03 6.01 0.00 5.73 R
3937 4444 0.244450 TACCAACAACGCCTACGAGG 59.756 55.000 0.00 0.00 43.93 4.63 R
4572 5190 0.238289 AAATGCAGAAACCTGACGCG 59.762 50.000 3.53 3.53 33.56 6.01 R
6297 8893 0.179051 TTAAACCCGTTGTGCGTCCT 60.179 50.000 0.00 0.00 39.32 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.897122 TCCCCAGGCCGCAGTTTT 61.897 61.111 0.00 0.00 0.00 2.43
18 19 2.917227 CCCCAGGCCGCAGTTTTT 60.917 61.111 0.00 0.00 0.00 1.94
19 20 2.650778 CCCAGGCCGCAGTTTTTC 59.349 61.111 0.00 0.00 0.00 2.29
20 21 2.255252 CCAGGCCGCAGTTTTTCG 59.745 61.111 0.00 0.00 0.00 3.46
21 22 2.258013 CCAGGCCGCAGTTTTTCGA 61.258 57.895 0.00 0.00 0.00 3.71
22 23 1.082104 CAGGCCGCAGTTTTTCGAC 60.082 57.895 0.00 0.00 0.00 4.20
23 24 2.127383 GGCCGCAGTTTTTCGACG 60.127 61.111 0.00 0.00 0.00 5.12
24 25 2.795389 GCCGCAGTTTTTCGACGC 60.795 61.111 0.00 0.00 0.00 5.19
25 26 2.127383 CCGCAGTTTTTCGACGCC 60.127 61.111 0.00 0.00 0.00 5.68
26 27 2.604174 CCGCAGTTTTTCGACGCCT 61.604 57.895 0.00 0.00 0.00 5.52
27 28 1.438710 CGCAGTTTTTCGACGCCTG 60.439 57.895 0.00 0.00 0.00 4.85
28 29 1.082104 GCAGTTTTTCGACGCCTGG 60.082 57.895 0.00 0.00 0.00 4.45
29 30 1.574428 CAGTTTTTCGACGCCTGGG 59.426 57.895 0.00 0.00 0.00 4.45
30 31 1.599797 AGTTTTTCGACGCCTGGGG 60.600 57.895 9.49 9.49 0.00 4.96
31 32 2.281900 TTTTTCGACGCCTGGGGG 60.282 61.111 15.73 5.80 0.00 5.40
50 51 4.327885 CCGAACGGCTAGAGATGC 57.672 61.111 0.00 0.00 0.00 3.91
51 52 1.736586 CCGAACGGCTAGAGATGCT 59.263 57.895 0.00 0.00 0.00 3.79
52 53 0.596083 CCGAACGGCTAGAGATGCTG 60.596 60.000 0.00 0.00 42.11 4.41
86 87 2.281276 GGTCGGCGTTGGTTCCTT 60.281 61.111 6.85 0.00 0.00 3.36
87 88 1.895231 GGTCGGCGTTGGTTCCTTT 60.895 57.895 6.85 0.00 0.00 3.11
88 89 1.449726 GGTCGGCGTTGGTTCCTTTT 61.450 55.000 6.85 0.00 0.00 2.27
89 90 0.382873 GTCGGCGTTGGTTCCTTTTT 59.617 50.000 6.85 0.00 0.00 1.94
124 125 2.183858 GAAAGCGGCGTTGGTTCCTC 62.184 60.000 9.37 0.00 0.00 3.71
127 128 4.323477 CGGCGTTGGTTCCTCCCA 62.323 66.667 0.00 0.00 34.77 4.37
149 150 0.248907 GCTAATCTCGCCGCAGTACA 60.249 55.000 0.00 0.00 0.00 2.90
154 155 2.986979 TCGCCGCAGTACAGTCCA 60.987 61.111 0.00 0.00 0.00 4.02
355 368 1.588404 CGCAAATCAGTAGGCGTAGTG 59.412 52.381 13.89 13.89 44.11 2.74
358 371 2.860735 CAAATCAGTAGGCGTAGTGCTC 59.139 50.000 15.00 0.00 45.43 4.26
360 373 1.064296 CAGTAGGCGTAGTGCTCCG 59.936 63.158 8.24 0.00 45.43 4.63
361 374 1.378250 AGTAGGCGTAGTGCTCCGT 60.378 57.895 0.00 0.00 45.43 4.69
363 376 2.117156 TAGGCGTAGTGCTCCGTCC 61.117 63.158 0.00 0.00 45.43 4.79
449 470 3.590574 AAGTGGGGGAAGGTGGCC 61.591 66.667 0.00 0.00 0.00 5.36
450 471 4.617595 AGTGGGGGAAGGTGGCCT 62.618 66.667 3.32 0.00 33.87 5.19
457 478 4.357279 GAAGGTGGCCTGCCTGCT 62.357 66.667 18.06 5.67 36.30 4.24
458 479 4.673375 AAGGTGGCCTGCCTGCTG 62.673 66.667 18.06 0.00 36.30 4.41
466 487 3.749064 CTGCCTGCTGCCTTGCTG 61.749 66.667 0.00 0.00 40.16 4.41
572 613 9.435570 GAGGGATCTTATTATAGCTACCCATTA 57.564 37.037 11.62 0.00 37.49 1.90
609 651 0.393402 GGGTCATGCAGCTGTCATCA 60.393 55.000 16.64 4.76 0.00 3.07
660 702 4.845307 CCCCCTTCCCTCCCTCCC 62.845 77.778 0.00 0.00 0.00 4.30
661 703 3.711782 CCCCTTCCCTCCCTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
663 705 1.694525 CCCTTCCCTCCCTCCCTTC 60.695 68.421 0.00 0.00 0.00 3.46
664 706 1.694525 CCTTCCCTCCCTCCCTTCC 60.695 68.421 0.00 0.00 0.00 3.46
665 707 1.694525 CTTCCCTCCCTCCCTTCCC 60.695 68.421 0.00 0.00 0.00 3.97
705 749 1.319799 CCCTCCCCCATCTCTTCCT 59.680 63.158 0.00 0.00 0.00 3.36
755 824 0.249398 CTTTCCACCCGGATCGAAGT 59.751 55.000 0.73 0.00 42.41 3.01
772 853 2.203640 TCGGGAGGTGTCTGTGCT 60.204 61.111 0.00 0.00 0.00 4.40
788 887 1.299976 GCTGGATCGGACCAAACCT 59.700 57.895 0.00 0.00 39.59 3.50
849 948 2.859273 ATCGGGCAAAGTCTCCTGCG 62.859 60.000 1.84 0.00 39.55 5.18
880 979 4.291783 GTTAGCTCAGCTATCCGTGTAAG 58.708 47.826 7.36 0.00 41.01 2.34
892 991 4.884668 TCCGTGTAAGAGTTTTGATCCT 57.115 40.909 0.00 0.00 0.00 3.24
894 993 6.349243 TCCGTGTAAGAGTTTTGATCCTAA 57.651 37.500 0.00 0.00 0.00 2.69
912 1011 2.781681 AACAATACTTGGGTCCTCCG 57.218 50.000 0.00 0.00 38.76 4.63
913 1012 1.946984 ACAATACTTGGGTCCTCCGA 58.053 50.000 0.00 0.00 38.76 4.55
927 1026 1.071699 CCTCCGAAAGACCCAAACAGA 59.928 52.381 0.00 0.00 0.00 3.41
938 1037 0.251634 CCAAACAGAGAGGAGGAGCC 59.748 60.000 0.00 0.00 0.00 4.70
948 1047 2.490685 GAGGAGCCGAGGAACGAC 59.509 66.667 0.00 0.00 45.77 4.34
989 1088 2.978824 GGGTTGCGTCCTAGAGCA 59.021 61.111 0.00 0.00 42.15 4.26
1146 1256 1.594293 CACGACGCTGACCAAGGTT 60.594 57.895 0.00 0.00 0.00 3.50
1152 1262 0.041312 CGCTGACCAAGGTTTTCGTG 60.041 55.000 0.00 0.00 0.00 4.35
1287 1397 3.821881 CGGATTCGTACGTCCTCTC 57.178 57.895 19.25 9.16 32.19 3.20
1288 1398 1.297664 CGGATTCGTACGTCCTCTCT 58.702 55.000 19.25 0.00 32.19 3.10
1292 1418 3.460103 GATTCGTACGTCCTCTCTCTCT 58.540 50.000 16.05 0.00 0.00 3.10
1520 1649 3.817647 GAGAGGTGAGCAACAGTGAAAAT 59.182 43.478 0.00 0.00 0.00 1.82
1523 1652 5.239525 AGAGGTGAGCAACAGTGAAAATAAC 59.760 40.000 0.00 0.00 0.00 1.89
1525 1654 5.009010 AGGTGAGCAACAGTGAAAATAACAG 59.991 40.000 0.00 0.00 0.00 3.16
1548 1677 1.678101 CCGAATCAATGCCCTCCTTTC 59.322 52.381 0.00 0.00 0.00 2.62
1550 1679 3.019564 CGAATCAATGCCCTCCTTTCTT 58.980 45.455 0.00 0.00 0.00 2.52
1553 1682 5.567423 CGAATCAATGCCCTCCTTTCTTTTT 60.567 40.000 0.00 0.00 0.00 1.94
1555 1684 4.482990 TCAATGCCCTCCTTTCTTTTTCT 58.517 39.130 0.00 0.00 0.00 2.52
1557 1686 3.884037 TGCCCTCCTTTCTTTTTCTCT 57.116 42.857 0.00 0.00 0.00 3.10
1561 1690 3.332187 CCCTCCTTTCTTTTTCTCTCCCT 59.668 47.826 0.00 0.00 0.00 4.20
1562 1691 4.202620 CCCTCCTTTCTTTTTCTCTCCCTT 60.203 45.833 0.00 0.00 0.00 3.95
1563 1692 5.007034 CCTCCTTTCTTTTTCTCTCCCTTC 58.993 45.833 0.00 0.00 0.00 3.46
1598 1727 4.677514 GCATGTGCATGGCAGTAAATAACA 60.678 41.667 13.28 0.00 40.08 2.41
1602 1731 2.362077 GCATGGCAGTAAATAACAGGGG 59.638 50.000 0.00 0.00 0.00 4.79
1663 1792 0.249322 GCTTGATTAGGGCTCGCGTA 60.249 55.000 5.77 0.00 0.00 4.42
1678 1807 2.159142 TCGCGTATTTCCTTCTCCTTCC 60.159 50.000 5.77 0.00 0.00 3.46
1680 1809 3.679083 CGCGTATTTCCTTCTCCTTCCTT 60.679 47.826 0.00 0.00 0.00 3.36
1681 1810 3.872182 GCGTATTTCCTTCTCCTTCCTTC 59.128 47.826 0.00 0.00 0.00 3.46
1682 1811 4.383226 GCGTATTTCCTTCTCCTTCCTTCT 60.383 45.833 0.00 0.00 0.00 2.85
1684 1813 4.853468 ATTTCCTTCTCCTTCCTTCTCC 57.147 45.455 0.00 0.00 0.00 3.71
1685 1814 3.569135 TTCCTTCTCCTTCCTTCTCCT 57.431 47.619 0.00 0.00 0.00 3.69
1686 1815 3.108847 TCCTTCTCCTTCCTTCTCCTC 57.891 52.381 0.00 0.00 0.00 3.71
1704 1833 1.745489 CCTCCTTGCGTGTTAGCCC 60.745 63.158 0.00 0.00 36.02 5.19
1720 1849 1.370064 CCCGCGGGTTAGGATAAGG 59.630 63.158 36.64 5.51 0.00 2.69
1868 2017 1.436600 CTGTCAGACATGCACACTCC 58.563 55.000 2.97 0.00 0.00 3.85
1901 2060 2.123033 GCTGGGTTGGGTTGGGTT 60.123 61.111 0.00 0.00 0.00 4.11
1963 2167 9.804758 GCTATACAGTACTGATTTTGACTACTT 57.195 33.333 29.30 4.50 0.00 2.24
2056 2265 6.563422 TGATTTTCTGTTTTCAGTCTTGTGG 58.437 36.000 0.00 0.00 46.98 4.17
2070 2283 5.525378 CAGTCTTGTGGCTGAAGATATAACC 59.475 44.000 2.73 0.00 34.87 2.85
2087 2306 9.875708 AGATATAACCAGAGTTCTCTAGTCAAT 57.124 33.333 1.83 2.82 37.42 2.57
2151 2371 7.812690 ATAGAAACCCATTACGGATTTAACC 57.187 36.000 0.00 0.00 36.56 2.85
2256 2477 2.190161 TCGATTTGAAGCGGTGATACG 58.810 47.619 1.35 0.00 38.53 3.06
2257 2478 2.159352 TCGATTTGAAGCGGTGATACGA 60.159 45.455 1.35 0.00 38.53 3.43
2258 2479 2.034842 CGATTTGAAGCGGTGATACGAC 60.035 50.000 0.00 0.00 33.58 4.34
2259 2480 1.717194 TTTGAAGCGGTGATACGACC 58.283 50.000 0.00 0.00 35.47 4.79
2293 2514 0.323087 GAATGCGGTGTAAAGGGGGT 60.323 55.000 0.00 0.00 0.00 4.95
2294 2515 0.610785 AATGCGGTGTAAAGGGGGTG 60.611 55.000 0.00 0.00 0.00 4.61
2324 2548 1.201181 CTATCGCTGGAGGGAGAATCG 59.799 57.143 0.00 0.00 40.39 3.34
2355 2579 1.066908 CGCTTTGCCTTTCTGGTCAAA 59.933 47.619 0.00 0.00 38.52 2.69
2361 2585 3.565307 TGCCTTTCTGGTCAAAATCAGT 58.435 40.909 0.00 0.00 38.35 3.41
2436 2661 1.611977 GACAGGGTTTAGTTTGGTGGC 59.388 52.381 0.00 0.00 0.00 5.01
2452 2677 1.374758 GGCTGTCAACGACTCTGGG 60.375 63.158 0.00 0.00 33.15 4.45
2453 2678 1.374758 GCTGTCAACGACTCTGGGG 60.375 63.158 0.00 0.00 33.15 4.96
2454 2679 1.816863 GCTGTCAACGACTCTGGGGA 61.817 60.000 0.00 0.00 33.15 4.81
2465 2700 7.560262 TCAACGACTCTGGGGAATATATATAGG 59.440 40.741 0.00 0.00 0.00 2.57
2492 2727 3.655486 CATGTTGCTTGGATTGCTTCAA 58.345 40.909 0.00 0.00 0.00 2.69
2497 2732 1.537202 GCTTGGATTGCTTCAACTCGT 59.463 47.619 0.00 0.00 0.00 4.18
2562 2798 9.285770 GTGTTACTTTATTGATTCGGGATTTTC 57.714 33.333 0.00 0.00 0.00 2.29
2596 2833 1.933115 AATGATTGGGTGAACGGCGC 61.933 55.000 6.90 0.00 0.00 6.53
2617 2854 3.611517 CTGTTGCACTGAACTTTTCTCG 58.388 45.455 0.00 0.00 0.00 4.04
2625 2862 5.800438 GCACTGAACTTTTCTCGTTCTTTTT 59.200 36.000 0.00 0.00 40.95 1.94
2654 2891 7.938563 TGATAAAACATTTTGACTTTTCCCG 57.061 32.000 0.00 0.00 0.00 5.14
2669 2906 5.944007 ACTTTTCCCGTGCAGAAATAATAGT 59.056 36.000 0.96 0.00 33.45 2.12
2673 2910 4.080807 TCCCGTGCAGAAATAATAGTTGGA 60.081 41.667 0.00 0.00 0.00 3.53
2817 3056 3.526931 TGGCACTGCTCTAATCTACAC 57.473 47.619 0.00 0.00 0.00 2.90
2818 3057 2.831526 TGGCACTGCTCTAATCTACACA 59.168 45.455 0.00 0.00 0.00 3.72
2855 3099 6.183347 AGAAACCTCCACAATTCCTCTATTG 58.817 40.000 0.00 0.00 40.53 1.90
2856 3100 3.891049 ACCTCCACAATTCCTCTATTGC 58.109 45.455 0.00 0.00 38.74 3.56
2860 3104 5.936956 CCTCCACAATTCCTCTATTGCTATC 59.063 44.000 0.00 0.00 38.74 2.08
2910 3158 3.604875 AAGAATTGGCCAAATGCAGAG 57.395 42.857 24.71 0.00 43.89 3.35
2918 3166 2.356125 GGCCAAATGCAGAGAGAGGTAA 60.356 50.000 0.00 0.00 43.89 2.85
3043 3306 0.742505 CATCCATGCATGTGTGTCCC 59.257 55.000 24.58 0.00 0.00 4.46
3044 3307 0.749091 ATCCATGCATGTGTGTCCCG 60.749 55.000 24.58 7.40 0.00 5.14
3045 3308 2.409055 CCATGCATGTGTGTCCCGG 61.409 63.158 24.58 2.67 0.00 5.73
3046 3309 2.045045 ATGCATGTGTGTCCCGGG 60.045 61.111 16.85 16.85 0.00 5.73
3048 3311 4.722700 GCATGTGTGTCCCGGGCT 62.723 66.667 18.49 0.00 0.00 5.19
3049 3312 2.436646 CATGTGTGTCCCGGGCTC 60.437 66.667 18.49 12.33 0.00 4.70
3050 3313 3.717294 ATGTGTGTCCCGGGCTCC 61.717 66.667 18.49 6.66 0.00 4.70
3076 3349 0.107848 AACGTAGTAGGGCACATGGC 60.108 55.000 0.00 0.00 45.00 4.40
3119 3392 2.102252 TCCATCCAACTGTTTTGCAACC 59.898 45.455 0.00 0.00 31.02 3.77
3158 3440 2.516930 CCCCCTGCCTGCAATACG 60.517 66.667 0.00 0.00 0.00 3.06
3199 3481 5.691305 TCTTCACAGCACATTTATTTGTTGC 59.309 36.000 0.00 0.00 0.00 4.17
3247 3529 1.200020 GCAGCCCAACAATAGTGTGTC 59.800 52.381 0.00 0.00 38.27 3.67
3250 3532 3.084039 AGCCCAACAATAGTGTGTCATG 58.916 45.455 0.00 0.00 38.27 3.07
3252 3534 3.119849 GCCCAACAATAGTGTGTCATGTC 60.120 47.826 0.00 0.00 38.27 3.06
3253 3535 4.326826 CCCAACAATAGTGTGTCATGTCT 58.673 43.478 0.00 0.00 38.27 3.41
3254 3536 5.487433 CCCAACAATAGTGTGTCATGTCTA 58.513 41.667 0.00 0.00 38.27 2.59
3256 3538 6.599244 CCCAACAATAGTGTGTCATGTCTAAT 59.401 38.462 0.00 0.00 38.27 1.73
3257 3539 7.121168 CCCAACAATAGTGTGTCATGTCTAATT 59.879 37.037 0.00 0.00 38.27 1.40
3420 3736 1.359848 CCTCACGCCATGTTCTACAC 58.640 55.000 0.00 0.00 0.00 2.90
3447 3923 1.809619 CGTACGGGTGAGTGCCATG 60.810 63.158 7.57 0.00 0.00 3.66
3461 3944 1.488812 TGCCATGTCCCCATGTACTAC 59.511 52.381 0.00 0.00 45.83 2.73
3462 3945 1.768870 GCCATGTCCCCATGTACTACT 59.231 52.381 0.00 0.00 45.83 2.57
3463 3946 2.485479 GCCATGTCCCCATGTACTACTG 60.485 54.545 0.00 0.00 45.83 2.74
3464 3947 2.771943 CCATGTCCCCATGTACTACTGT 59.228 50.000 0.00 0.00 45.83 3.55
3465 3948 3.181465 CCATGTCCCCATGTACTACTGTC 60.181 52.174 0.00 0.00 45.83 3.51
3466 3949 3.468071 TGTCCCCATGTACTACTGTCT 57.532 47.619 0.00 0.00 0.00 3.41
3467 3950 4.596354 TGTCCCCATGTACTACTGTCTA 57.404 45.455 0.00 0.00 0.00 2.59
3468 3951 4.275810 TGTCCCCATGTACTACTGTCTAC 58.724 47.826 0.00 0.00 0.00 2.59
3469 3952 4.017775 TGTCCCCATGTACTACTGTCTACT 60.018 45.833 0.00 0.00 0.00 2.57
3470 3953 4.338682 GTCCCCATGTACTACTGTCTACTG 59.661 50.000 0.00 0.00 0.00 2.74
3471 3954 4.017775 TCCCCATGTACTACTGTCTACTGT 60.018 45.833 0.00 0.00 0.00 3.55
3472 3955 4.338682 CCCCATGTACTACTGTCTACTGTC 59.661 50.000 0.00 0.00 0.00 3.51
3473 3956 5.194432 CCCATGTACTACTGTCTACTGTCT 58.806 45.833 0.00 0.00 0.00 3.41
3474 3957 6.354938 CCCATGTACTACTGTCTACTGTCTA 58.645 44.000 0.00 0.00 0.00 2.59
3475 3958 6.260493 CCCATGTACTACTGTCTACTGTCTAC 59.740 46.154 0.00 0.16 0.00 2.59
3476 3959 7.049133 CCATGTACTACTGTCTACTGTCTACT 58.951 42.308 0.00 0.00 0.00 2.57
3477 3960 7.011576 CCATGTACTACTGTCTACTGTCTACTG 59.988 44.444 0.00 0.00 0.00 2.74
3478 3961 7.002250 TGTACTACTGTCTACTGTCTACTGT 57.998 40.000 0.00 9.02 0.00 3.55
3479 3962 7.095910 TGTACTACTGTCTACTGTCTACTGTC 58.904 42.308 7.80 0.00 0.00 3.51
3480 3963 6.363167 ACTACTGTCTACTGTCTACTGTCT 57.637 41.667 7.80 0.00 0.00 3.41
3481 3964 7.479352 ACTACTGTCTACTGTCTACTGTCTA 57.521 40.000 7.80 0.00 0.00 2.59
3541 4025 1.333169 CGCAATGCATCATCGTACACC 60.333 52.381 5.91 0.00 0.00 4.16
3542 4026 1.333169 GCAATGCATCATCGTACACCG 60.333 52.381 0.00 0.00 38.13 4.94
3570 4054 3.200593 GATCTGGGTGCGCTGCAG 61.201 66.667 10.11 10.11 40.08 4.41
3576 4060 3.426568 GGTGCGCTGCAGGTTCTC 61.427 66.667 17.12 0.00 40.08 2.87
3623 4107 6.415573 AGACCTATTGTTAATGTCCCAGTTC 58.584 40.000 0.00 0.00 0.00 3.01
3637 4124 4.403752 GTCCCAGTTCCGTAATAAGGTAGT 59.596 45.833 0.00 0.00 0.00 2.73
3639 4126 5.829924 TCCCAGTTCCGTAATAAGGTAGTAG 59.170 44.000 0.00 0.00 0.00 2.57
3640 4127 5.595952 CCCAGTTCCGTAATAAGGTAGTAGT 59.404 44.000 0.00 0.00 0.00 2.73
3641 4128 6.460676 CCCAGTTCCGTAATAAGGTAGTAGTG 60.461 46.154 0.00 0.00 0.00 2.74
3642 4129 5.975939 CAGTTCCGTAATAAGGTAGTAGTGC 59.024 44.000 0.00 0.00 0.00 4.40
3643 4130 5.890419 AGTTCCGTAATAAGGTAGTAGTGCT 59.110 40.000 0.00 0.00 0.00 4.40
3644 4131 7.012704 CAGTTCCGTAATAAGGTAGTAGTGCTA 59.987 40.741 0.00 0.00 0.00 3.49
3687 4174 4.506758 GCAATGATGGGTACAAAAGCATT 58.493 39.130 0.00 0.00 0.00 3.56
3692 4179 5.537188 TGATGGGTACAAAAGCATTGTTTC 58.463 37.500 12.35 7.24 34.11 2.78
3739 4234 2.791383 TGCATTTTTCGTGGTTCAGG 57.209 45.000 0.00 0.00 0.00 3.86
3741 4236 1.336795 GCATTTTTCGTGGTTCAGGGG 60.337 52.381 0.00 0.00 0.00 4.79
3742 4237 1.272212 CATTTTTCGTGGTTCAGGGGG 59.728 52.381 0.00 0.00 0.00 5.40
3777 4280 5.216648 TGAGGTAAATTAGTTTGCGTTTGC 58.783 37.500 0.00 0.00 43.20 3.68
3790 4293 1.065358 CGTTTGCTACGGTGGTGTAG 58.935 55.000 4.34 0.00 46.42 2.74
3807 4310 6.744537 GTGGTGTAGTACAATAGACAACTACG 59.255 42.308 4.11 0.00 44.63 3.51
3808 4311 6.430925 TGGTGTAGTACAATAGACAACTACGT 59.569 38.462 4.11 0.00 44.63 3.57
3809 4312 7.606073 TGGTGTAGTACAATAGACAACTACGTA 59.394 37.037 4.11 0.00 44.63 3.57
3810 4313 7.905493 GGTGTAGTACAATAGACAACTACGTAC 59.095 40.741 4.11 0.00 44.63 3.67
3811 4314 8.660373 GTGTAGTACAATAGACAACTACGTACT 58.340 37.037 4.11 17.33 44.63 2.73
3812 4315 9.219603 TGTAGTACAATAGACAACTACGTACTT 57.780 33.333 17.91 0.00 44.63 2.24
3813 4316 9.695884 GTAGTACAATAGACAACTACGTACTTC 57.304 37.037 17.91 13.01 42.27 3.01
3814 4317 8.558973 AGTACAATAGACAACTACGTACTTCT 57.441 34.615 0.00 0.00 42.27 2.85
3817 4320 8.783833 ACAATAGACAACTACGTACTTCTAGA 57.216 34.615 0.00 0.00 0.00 2.43
3818 4321 8.663911 ACAATAGACAACTACGTACTTCTAGAC 58.336 37.037 0.00 0.00 0.00 2.59
3819 4322 7.784633 ATAGACAACTACGTACTTCTAGACC 57.215 40.000 0.00 0.00 0.00 3.85
3889 4396 3.096489 TGCATTTTTGTGGTTCAGAGC 57.904 42.857 0.00 0.00 0.00 4.09
3907 4414 3.251016 AGCTATGCTCATCCTGAGGTA 57.749 47.619 0.00 0.00 44.43 3.08
3908 4415 3.164268 AGCTATGCTCATCCTGAGGTAG 58.836 50.000 0.00 0.00 44.43 3.18
3909 4416 2.896685 GCTATGCTCATCCTGAGGTAGT 59.103 50.000 0.00 0.00 44.43 2.73
3921 4428 6.488769 TCCTGAGGTAGTAAACAGTTTGAA 57.511 37.500 8.93 0.00 0.00 2.69
3923 4430 6.053005 CCTGAGGTAGTAAACAGTTTGAACA 58.947 40.000 8.93 0.00 0.00 3.18
3924 4431 6.018180 CCTGAGGTAGTAAACAGTTTGAACAC 60.018 42.308 8.93 0.00 0.00 3.32
3927 4434 6.174760 AGGTAGTAAACAGTTTGAACACACA 58.825 36.000 8.93 0.00 0.00 3.72
3928 4435 6.826741 AGGTAGTAAACAGTTTGAACACACAT 59.173 34.615 8.93 0.00 0.00 3.21
3929 4436 7.988599 AGGTAGTAAACAGTTTGAACACACATA 59.011 33.333 8.93 0.00 0.00 2.29
3932 4439 7.916552 AGTAAACAGTTTGAACACACATAGTC 58.083 34.615 8.93 0.00 0.00 2.59
3933 4440 5.403897 AACAGTTTGAACACACATAGTCG 57.596 39.130 0.00 0.00 0.00 4.18
3937 4444 4.684703 AGTTTGAACACACATAGTCGTAGC 59.315 41.667 0.00 0.00 0.00 3.58
3938 4445 3.226346 TGAACACACATAGTCGTAGCC 57.774 47.619 0.00 0.00 0.00 3.93
3974 4545 6.653320 TGTTGGTAGTTGCTCTTTATTGTAGG 59.347 38.462 0.00 0.00 0.00 3.18
3976 4547 6.640518 TGGTAGTTGCTCTTTATTGTAGGAG 58.359 40.000 0.00 0.00 0.00 3.69
3977 4548 6.212791 TGGTAGTTGCTCTTTATTGTAGGAGT 59.787 38.462 0.00 0.00 0.00 3.85
3978 4549 7.398047 TGGTAGTTGCTCTTTATTGTAGGAGTA 59.602 37.037 0.00 0.00 0.00 2.59
4065 4642 1.076014 TCAGCACTCAGGTCGGGTA 59.924 57.895 0.00 0.00 0.00 3.69
4106 4685 2.046892 TTCAGCTGCCGCTTCCTC 60.047 61.111 9.47 0.00 46.47 3.71
4450 5066 1.340889 GCGGTTGACGTACCCCATATA 59.659 52.381 1.88 0.00 46.52 0.86
4477 5093 0.751277 TATTGGAATGGGCAGCGTGG 60.751 55.000 0.00 0.00 0.00 4.94
4530 5146 2.609737 CGGTCTGTCCAGGAACAAGTAC 60.610 54.545 0.00 0.00 35.57 2.73
4531 5147 2.633481 GGTCTGTCCAGGAACAAGTACT 59.367 50.000 0.00 0.00 35.97 2.73
4532 5148 3.555168 GGTCTGTCCAGGAACAAGTACTG 60.555 52.174 0.00 0.00 35.97 2.74
4537 5153 3.258622 GTCCAGGAACAAGTACTGCTACT 59.741 47.826 0.00 0.00 34.38 2.57
4554 5170 4.517832 TGCTACTACTTGAGTCGTTTCTGA 59.482 41.667 0.00 0.00 39.81 3.27
4572 5190 8.325282 CGTTTCTGAAAGGAAAAATTACAAACC 58.675 33.333 15.68 0.00 29.40 3.27
4575 5193 4.740695 TGAAAGGAAAAATTACAAACCGCG 59.259 37.500 0.00 0.00 0.00 6.46
4592 5210 1.334960 CGCGTCAGGTTTCTGCATTTT 60.335 47.619 0.00 0.00 40.69 1.82
4598 5216 5.147162 GTCAGGTTTCTGCATTTTTACTCG 58.853 41.667 0.00 0.00 40.69 4.18
4604 5222 8.612619 AGGTTTCTGCATTTTTACTCGTATATG 58.387 33.333 0.00 0.00 0.00 1.78
4605 5223 7.376072 GGTTTCTGCATTTTTACTCGTATATGC 59.624 37.037 0.00 0.00 38.97 3.14
4606 5224 7.546778 TTCTGCATTTTTACTCGTATATGCA 57.453 32.000 15.12 15.12 44.12 3.96
4607 5225 7.728847 TCTGCATTTTTACTCGTATATGCAT 57.271 32.000 3.79 3.79 44.89 3.96
4608 5226 8.825667 TCTGCATTTTTACTCGTATATGCATA 57.174 30.769 9.27 9.27 44.89 3.14
4609 5227 8.925700 TCTGCATTTTTACTCGTATATGCATAG 58.074 33.333 12.79 2.06 44.89 2.23
4640 5258 2.495270 TGTGCTTTCTCTTTGGTGCAAA 59.505 40.909 0.00 0.00 32.10 3.68
4647 5265 6.403527 GCTTTCTCTTTGGTGCAAATTTGTTT 60.404 34.615 19.03 0.00 32.70 2.83
4648 5266 7.201600 GCTTTCTCTTTGGTGCAAATTTGTTTA 60.202 33.333 19.03 4.20 32.70 2.01
4649 5267 8.729805 TTTCTCTTTGGTGCAAATTTGTTTAT 57.270 26.923 19.03 0.00 32.70 1.40
4650 5268 9.823647 TTTCTCTTTGGTGCAAATTTGTTTATA 57.176 25.926 19.03 0.85 32.70 0.98
4652 5270 8.637986 TCTCTTTGGTGCAAATTTGTTTATACT 58.362 29.630 19.03 0.00 32.70 2.12
4654 5272 9.039870 TCTTTGGTGCAAATTTGTTTATACTTG 57.960 29.630 19.03 3.86 32.70 3.16
4656 5274 7.706281 TGGTGCAAATTTGTTTATACTTGTG 57.294 32.000 19.03 0.00 0.00 3.33
4657 5275 7.492524 TGGTGCAAATTTGTTTATACTTGTGA 58.507 30.769 19.03 0.00 0.00 3.58
4658 5276 7.436673 TGGTGCAAATTTGTTTATACTTGTGAC 59.563 33.333 19.03 0.00 0.00 3.67
4660 5278 8.479280 GTGCAAATTTGTTTATACTTGTGACTG 58.521 33.333 19.03 0.00 0.00 3.51
4680 5314 0.598065 GCCAACCAGCTGTGTTTAGG 59.402 55.000 13.81 14.41 0.00 2.69
4690 5324 3.066760 AGCTGTGTTTAGGTTCTTGCAAC 59.933 43.478 0.00 0.00 0.00 4.17
4698 5332 3.272766 GTTCTTGCAACCAAGCACC 57.727 52.632 0.00 0.00 46.38 5.01
4699 5333 0.249447 GTTCTTGCAACCAAGCACCC 60.249 55.000 0.00 0.00 46.38 4.61
4715 5351 4.729868 AGCACCCTCTTTATGAAAACAGT 58.270 39.130 0.00 0.00 0.00 3.55
4717 5353 5.705905 AGCACCCTCTTTATGAAAACAGTAC 59.294 40.000 0.00 0.00 0.00 2.73
4719 5355 6.206829 GCACCCTCTTTATGAAAACAGTACTT 59.793 38.462 0.00 0.00 0.00 2.24
4720 5356 7.584987 CACCCTCTTTATGAAAACAGTACTTG 58.415 38.462 0.00 0.00 0.00 3.16
4723 5359 8.718734 CCCTCTTTATGAAAACAGTACTTGTAC 58.281 37.037 0.00 2.94 39.73 2.90
4724 5360 8.718734 CCTCTTTATGAAAACAGTACTTGTACC 58.281 37.037 7.24 0.00 39.73 3.34
4727 5363 8.967664 TTTATGAAAACAGTACTTGTACCAGT 57.032 30.769 4.83 4.83 39.73 4.00
4776 7249 4.904241 AGAGGAAGGAGTGTTCATTTGAG 58.096 43.478 0.00 0.00 0.00 3.02
4781 7295 6.881602 AGGAAGGAGTGTTCATTTGAGATAAC 59.118 38.462 0.00 0.00 0.00 1.89
4829 7343 4.216472 TGCTCGTACATATGTCTCTGATCC 59.784 45.833 12.68 2.13 0.00 3.36
4832 7346 6.259550 TCGTACATATGTCTCTGATCCATG 57.740 41.667 12.68 0.00 0.00 3.66
4835 7349 6.750963 CGTACATATGTCTCTGATCCATGATG 59.249 42.308 12.68 0.00 0.00 3.07
4856 7370 3.741476 GGCTCGTGCTTGGCTTGG 61.741 66.667 9.61 0.00 39.59 3.61
4857 7371 2.980233 GCTCGTGCTTGGCTTGGT 60.980 61.111 1.41 0.00 36.03 3.67
4865 7379 0.548510 GCTTGGCTTGGTCCCTATCT 59.451 55.000 0.00 0.00 0.00 1.98
4866 7380 1.748591 GCTTGGCTTGGTCCCTATCTG 60.749 57.143 0.00 0.00 0.00 2.90
4902 7416 4.495844 GGCGCTGATGAAGTTATGTAAACC 60.496 45.833 7.64 0.00 0.00 3.27
4933 7447 3.046374 ACTGGTACCCACCTGATTATCC 58.954 50.000 10.07 0.00 45.98 2.59
5004 7519 6.068010 TCTCTTGTTTTATTCCACCACATGT 58.932 36.000 0.00 0.00 0.00 3.21
5024 7539 5.023533 TGTGACTGCTCCTTTGTATATCC 57.976 43.478 0.00 0.00 0.00 2.59
5037 7552 8.836413 TCCTTTGTATATCCGCTCTTTAAAATG 58.164 33.333 0.00 0.00 0.00 2.32
5056 7571 1.563879 TGCCAGCAGTACCCAACATAT 59.436 47.619 0.00 0.00 0.00 1.78
5057 7572 1.949525 GCCAGCAGTACCCAACATATG 59.050 52.381 0.00 0.00 0.00 1.78
5060 7575 4.776349 CCAGCAGTACCCAACATATGTAA 58.224 43.478 9.21 0.00 0.00 2.41
5063 7578 6.238731 CCAGCAGTACCCAACATATGTAAATG 60.239 42.308 9.21 3.85 0.00 2.32
5065 7580 7.229306 CAGCAGTACCCAACATATGTAAATGAT 59.771 37.037 9.21 0.00 0.00 2.45
5066 7581 7.445402 AGCAGTACCCAACATATGTAAATGATC 59.555 37.037 9.21 0.00 0.00 2.92
5068 7583 8.777413 CAGTACCCAACATATGTAAATGATCTG 58.223 37.037 9.21 9.03 0.00 2.90
5069 7584 8.494433 AGTACCCAACATATGTAAATGATCTGT 58.506 33.333 9.21 3.09 0.00 3.41
5070 7585 9.772973 GTACCCAACATATGTAAATGATCTGTA 57.227 33.333 9.21 2.26 0.00 2.74
5072 7587 9.288576 ACCCAACATATGTAAATGATCTGTATG 57.711 33.333 9.21 0.00 0.00 2.39
5073 7588 9.288576 CCCAACATATGTAAATGATCTGTATGT 57.711 33.333 9.21 0.00 33.97 2.29
5209 7734 6.855763 TTCCAATGGAATTAGCAAATCACT 57.144 33.333 11.23 0.00 36.71 3.41
5218 7743 6.408858 AATTAGCAAATCACTAGTGACACG 57.591 37.500 27.41 18.10 43.11 4.49
5253 7778 5.730296 AAGTCAGACACTAGCACAATACT 57.270 39.130 2.66 0.00 32.30 2.12
5269 7802 7.668052 AGCACAATACTGACCCACTTATTTTAA 59.332 33.333 0.00 0.00 0.00 1.52
5281 7814 8.973182 ACCCACTTATTTTAAAACTGACTGAAA 58.027 29.630 1.97 0.00 0.00 2.69
5282 7815 9.244799 CCCACTTATTTTAAAACTGACTGAAAC 57.755 33.333 1.97 0.00 0.00 2.78
5283 7816 9.796120 CCACTTATTTTAAAACTGACTGAAACA 57.204 29.630 1.97 0.00 0.00 2.83
5293 7826 8.776376 AAAACTGACTGAAACAATGAAATGTT 57.224 26.923 0.00 0.00 45.12 2.71
5315 7848 8.072321 TGTTTGAAAATTTATATGCAGGCCTA 57.928 30.769 3.98 0.00 0.00 3.93
5349 7882 2.863137 GCAGCAATACTACTCTCAGCAC 59.137 50.000 0.00 0.00 0.00 4.40
5387 7920 4.280819 CCTTCAACATCACCATACCCATT 58.719 43.478 0.00 0.00 0.00 3.16
5476 8009 1.667830 CCGCCGTTCTTTCAGCAGA 60.668 57.895 0.00 0.00 0.00 4.26
5610 8143 6.209391 CCTCAGTTTTCAGACCACCAAAATAT 59.791 38.462 0.00 0.00 0.00 1.28
5679 8212 3.914426 AGCGACTATGTTCCCATCTTT 57.086 42.857 0.00 0.00 32.29 2.52
5708 8241 5.280945 TCAAACTTTGCAGTAAACTCATGC 58.719 37.500 0.00 0.00 40.40 4.06
5757 8345 3.997021 CACAACCAACTCAGACAGTATCC 59.003 47.826 0.00 0.00 32.30 2.59
5776 8364 1.078759 CGAGGCTGAGGCTACAAACG 61.079 60.000 9.08 3.87 38.98 3.60
5793 8381 2.770164 ACGCAGATAACCAAGAAGCT 57.230 45.000 0.00 0.00 0.00 3.74
5890 8478 2.093021 TGATTTGATGCCGATCTGGACA 60.093 45.455 7.64 5.75 42.00 4.02
5902 8490 5.314529 CCGATCTGGACAGGACTATTAGTA 58.685 45.833 0.00 0.00 42.00 1.82
5904 8492 5.106475 CGATCTGGACAGGACTATTAGTAGC 60.106 48.000 0.00 0.00 0.00 3.58
5905 8493 4.471548 TCTGGACAGGACTATTAGTAGCC 58.528 47.826 0.00 0.00 0.00 3.93
5915 8503 3.453353 ACTATTAGTAGCCCGCAAAGGAA 59.547 43.478 0.00 0.00 45.00 3.36
5919 8507 1.557832 AGTAGCCCGCAAAGGAATACA 59.442 47.619 0.00 0.00 45.00 2.29
5942 8530 6.540914 ACAAAAATACTCGTTTCTTGACTGGA 59.459 34.615 0.00 0.00 0.00 3.86
6045 8633 3.252215 CCCATTGTACTGCGAAACTGAAA 59.748 43.478 0.00 0.00 0.00 2.69
6056 8644 1.940613 GAAACTGAAACTCACGCCAGT 59.059 47.619 0.00 0.00 41.14 4.00
6170 8766 5.242171 TCCTACAACACTCGATTGTTACAGA 59.758 40.000 19.26 11.68 40.68 3.41
6176 8772 7.542477 ACAACACTCGATTGTTACAGAATAGAG 59.458 37.037 19.26 7.16 37.62 2.43
6213 8809 3.005155 AGGACTGGTGAAACTACGTACAC 59.995 47.826 5.69 5.69 36.74 2.90
6214 8810 3.243501 GGACTGGTGAAACTACGTACACA 60.244 47.826 13.92 0.71 36.74 3.72
6219 8815 4.038282 TGGTGAAACTACGTACACATCACT 59.962 41.667 18.06 0.00 36.74 3.41
6224 8820 4.948608 ACTACGTACACATCACTGAGAG 57.051 45.455 0.00 0.00 0.00 3.20
6254 8850 4.989044 TCGTCGATGCATAGTTTGTCTTA 58.011 39.130 0.00 0.00 0.00 2.10
6255 8851 5.034797 TCGTCGATGCATAGTTTGTCTTAG 58.965 41.667 0.00 0.00 0.00 2.18
6256 8852 4.317418 CGTCGATGCATAGTTTGTCTTAGC 60.317 45.833 0.00 0.00 0.00 3.09
6257 8853 4.566759 GTCGATGCATAGTTTGTCTTAGCA 59.433 41.667 0.00 0.00 38.42 3.49
6258 8854 5.235186 GTCGATGCATAGTTTGTCTTAGCAT 59.765 40.000 0.00 0.00 43.16 3.79
6259 8855 6.420903 GTCGATGCATAGTTTGTCTTAGCATA 59.579 38.462 0.00 0.00 41.76 3.14
6260 8856 6.420903 TCGATGCATAGTTTGTCTTAGCATAC 59.579 38.462 0.00 0.00 41.76 2.39
6261 8857 6.422100 CGATGCATAGTTTGTCTTAGCATACT 59.578 38.462 0.00 5.53 41.76 2.12
6262 8858 6.908870 TGCATAGTTTGTCTTAGCATACTG 57.091 37.500 8.84 0.00 33.79 2.74
6263 8859 6.406370 TGCATAGTTTGTCTTAGCATACTGT 58.594 36.000 8.84 0.00 33.79 3.55
6264 8860 6.878923 TGCATAGTTTGTCTTAGCATACTGTT 59.121 34.615 8.84 0.00 33.79 3.16
6265 8861 7.148423 TGCATAGTTTGTCTTAGCATACTGTTG 60.148 37.037 8.84 7.89 33.79 3.33
6266 8862 7.677276 GCATAGTTTGTCTTAGCATACTGTTGG 60.677 40.741 8.84 0.00 33.79 3.77
6267 8863 5.865085 AGTTTGTCTTAGCATACTGTTGGA 58.135 37.500 0.00 0.00 31.29 3.53
6268 8864 6.476378 AGTTTGTCTTAGCATACTGTTGGAT 58.524 36.000 0.00 0.00 31.29 3.41
6269 8865 6.595716 AGTTTGTCTTAGCATACTGTTGGATC 59.404 38.462 0.00 0.00 31.29 3.36
6270 8866 5.675684 TGTCTTAGCATACTGTTGGATCA 57.324 39.130 0.00 0.00 0.00 2.92
6271 8867 6.239217 TGTCTTAGCATACTGTTGGATCAT 57.761 37.500 0.00 0.00 0.00 2.45
6272 8868 6.653020 TGTCTTAGCATACTGTTGGATCATT 58.347 36.000 0.00 0.00 0.00 2.57
6273 8869 7.112122 TGTCTTAGCATACTGTTGGATCATTT 58.888 34.615 0.00 0.00 0.00 2.32
6274 8870 7.611467 TGTCTTAGCATACTGTTGGATCATTTT 59.389 33.333 0.00 0.00 0.00 1.82
6275 8871 8.125448 GTCTTAGCATACTGTTGGATCATTTTC 58.875 37.037 0.00 0.00 0.00 2.29
6276 8872 8.049117 TCTTAGCATACTGTTGGATCATTTTCT 58.951 33.333 0.00 0.00 0.00 2.52
6277 8873 8.579850 TTAGCATACTGTTGGATCATTTTCTT 57.420 30.769 0.00 0.00 0.00 2.52
6278 8874 7.093322 AGCATACTGTTGGATCATTTTCTTC 57.907 36.000 0.00 0.00 0.00 2.87
6279 8875 6.660521 AGCATACTGTTGGATCATTTTCTTCA 59.339 34.615 0.00 0.00 0.00 3.02
6280 8876 6.749118 GCATACTGTTGGATCATTTTCTTCAC 59.251 38.462 0.00 0.00 0.00 3.18
6281 8877 5.712152 ACTGTTGGATCATTTTCTTCACC 57.288 39.130 0.00 0.00 0.00 4.02
6282 8878 5.139727 ACTGTTGGATCATTTTCTTCACCA 58.860 37.500 0.00 0.00 0.00 4.17
6283 8879 5.242393 ACTGTTGGATCATTTTCTTCACCAG 59.758 40.000 0.00 0.00 0.00 4.00
6284 8880 5.139727 TGTTGGATCATTTTCTTCACCAGT 58.860 37.500 0.00 0.00 0.00 4.00
6285 8881 5.241506 TGTTGGATCATTTTCTTCACCAGTC 59.758 40.000 0.00 0.00 0.00 3.51
6286 8882 4.335416 TGGATCATTTTCTTCACCAGTCC 58.665 43.478 0.00 0.00 0.00 3.85
6287 8883 4.202556 TGGATCATTTTCTTCACCAGTCCA 60.203 41.667 0.00 0.00 0.00 4.02
6288 8884 4.397417 GGATCATTTTCTTCACCAGTCCAG 59.603 45.833 0.00 0.00 0.00 3.86
6289 8885 4.705110 TCATTTTCTTCACCAGTCCAGA 57.295 40.909 0.00 0.00 0.00 3.86
6290 8886 5.047566 TCATTTTCTTCACCAGTCCAGAA 57.952 39.130 0.00 0.00 0.00 3.02
6297 8893 6.373005 TCTTCACCAGTCCAGAATTGATAA 57.627 37.500 0.00 0.00 0.00 1.75
6322 8918 2.287373 CGCACAACGGGTTTAAACAGTA 59.713 45.455 19.57 0.00 38.44 2.74
6323 8919 3.242673 CGCACAACGGGTTTAAACAGTAA 60.243 43.478 19.57 0.00 38.44 2.24
6324 8920 4.670347 GCACAACGGGTTTAAACAGTAAA 58.330 39.130 19.57 0.00 0.00 2.01
6325 8921 4.500117 GCACAACGGGTTTAAACAGTAAAC 59.500 41.667 19.57 1.42 36.86 2.01
6326 8922 4.729564 CACAACGGGTTTAAACAGTAAACG 59.270 41.667 19.57 14.36 38.06 3.60
6327 8923 3.607422 ACGGGTTTAAACAGTAAACGC 57.393 42.857 19.57 13.18 42.90 4.84
6328 8924 2.290367 ACGGGTTTAAACAGTAAACGCC 59.710 45.455 19.57 8.06 43.19 5.68
6329 8925 2.549329 CGGGTTTAAACAGTAAACGCCT 59.451 45.455 19.57 0.00 43.19 5.52
6330 8926 3.003585 CGGGTTTAAACAGTAAACGCCTT 59.996 43.478 19.57 0.00 43.19 4.35
6331 8927 4.213059 CGGGTTTAAACAGTAAACGCCTTA 59.787 41.667 19.57 0.00 43.19 2.69
6333 8929 6.568271 CGGGTTTAAACAGTAAACGCCTTATT 60.568 38.462 19.57 0.00 43.19 1.40
6335 8931 6.520790 GGTTTAAACAGTAAACGCCTTATTCG 59.479 38.462 19.57 0.00 38.06 3.34
6338 8956 6.490566 AAACAGTAAACGCCTTATTCGATT 57.509 33.333 0.00 0.00 0.00 3.34
6350 8968 5.473504 GCCTTATTCGATTTACCCATCACAT 59.526 40.000 0.00 0.00 0.00 3.21
6380 9001 4.439974 GGCTGATTCAACAAGACAACAACA 60.440 41.667 0.00 0.00 0.00 3.33
6534 9155 2.730672 CTTGCCTTTCTCGCCGTCG 61.731 63.158 0.00 0.00 0.00 5.12
6582 9203 3.057547 CTCCCTCCTCACGTCGCTG 62.058 68.421 0.00 0.00 0.00 5.18
6642 9263 3.742353 CAGTTCGTCGTCTGCTCG 58.258 61.111 7.10 0.00 0.00 5.03
6813 9434 0.322636 TCTCGGCGAGAAACTCCTCT 60.323 55.000 35.09 0.00 35.59 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.444818 AAAAACTGCGGCCTGGGGA 62.445 57.895 0.00 0.00 0.00 4.81
1 2 2.917227 AAAAACTGCGGCCTGGGG 60.917 61.111 0.00 0.00 0.00 4.96
2 3 2.650778 GAAAAACTGCGGCCTGGG 59.349 61.111 0.00 0.00 0.00 4.45
3 4 2.255252 CGAAAAACTGCGGCCTGG 59.745 61.111 0.00 0.00 0.00 4.45
4 5 1.082104 GTCGAAAAACTGCGGCCTG 60.082 57.895 0.00 0.00 0.00 4.85
5 6 2.604174 CGTCGAAAAACTGCGGCCT 61.604 57.895 0.00 0.00 0.00 5.19
6 7 2.127383 CGTCGAAAAACTGCGGCC 60.127 61.111 0.00 0.00 0.00 6.13
7 8 2.795389 GCGTCGAAAAACTGCGGC 60.795 61.111 0.00 0.00 0.00 6.53
8 9 2.127383 GGCGTCGAAAAACTGCGG 60.127 61.111 0.00 0.00 0.00 5.69
9 10 1.438710 CAGGCGTCGAAAAACTGCG 60.439 57.895 0.00 0.00 0.00 5.18
10 11 1.082104 CCAGGCGTCGAAAAACTGC 60.082 57.895 0.00 0.00 0.00 4.40
11 12 1.574428 CCCAGGCGTCGAAAAACTG 59.426 57.895 0.00 0.00 0.00 3.16
12 13 1.599797 CCCCAGGCGTCGAAAAACT 60.600 57.895 0.00 0.00 0.00 2.66
13 14 2.622962 CCCCCAGGCGTCGAAAAAC 61.623 63.158 0.00 0.00 0.00 2.43
14 15 2.281900 CCCCCAGGCGTCGAAAAA 60.282 61.111 0.00 0.00 0.00 1.94
33 34 0.596083 CAGCATCTCTAGCCGTTCGG 60.596 60.000 6.90 6.90 0.00 4.30
34 35 0.101399 ACAGCATCTCTAGCCGTTCG 59.899 55.000 0.00 0.00 0.00 3.95
35 36 3.438297 TTACAGCATCTCTAGCCGTTC 57.562 47.619 0.00 0.00 0.00 3.95
36 37 3.195825 ACTTTACAGCATCTCTAGCCGTT 59.804 43.478 0.00 0.00 0.00 4.44
37 38 2.761208 ACTTTACAGCATCTCTAGCCGT 59.239 45.455 0.00 0.00 0.00 5.68
38 39 3.444703 ACTTTACAGCATCTCTAGCCG 57.555 47.619 0.00 0.00 0.00 5.52
39 40 4.797933 GCCTACTTTACAGCATCTCTAGCC 60.798 50.000 0.00 0.00 0.00 3.93
40 41 4.202161 TGCCTACTTTACAGCATCTCTAGC 60.202 45.833 0.00 0.00 0.00 3.42
41 42 5.285651 GTGCCTACTTTACAGCATCTCTAG 58.714 45.833 0.00 0.00 37.60 2.43
42 43 4.202020 CGTGCCTACTTTACAGCATCTCTA 60.202 45.833 0.00 0.00 37.60 2.43
43 44 3.429547 CGTGCCTACTTTACAGCATCTCT 60.430 47.826 0.00 0.00 37.60 3.10
44 45 2.860735 CGTGCCTACTTTACAGCATCTC 59.139 50.000 0.00 0.00 37.60 2.75
45 46 2.893637 CGTGCCTACTTTACAGCATCT 58.106 47.619 0.00 0.00 37.60 2.90
46 47 1.327764 GCGTGCCTACTTTACAGCATC 59.672 52.381 0.00 0.00 37.60 3.91
47 48 1.338674 TGCGTGCCTACTTTACAGCAT 60.339 47.619 0.00 0.00 37.60 3.79
48 49 0.034198 TGCGTGCCTACTTTACAGCA 59.966 50.000 0.00 0.00 0.00 4.41
49 50 0.442699 GTGCGTGCCTACTTTACAGC 59.557 55.000 0.00 0.00 0.00 4.40
50 51 0.713883 CGTGCGTGCCTACTTTACAG 59.286 55.000 0.00 0.00 0.00 2.74
51 52 0.668096 CCGTGCGTGCCTACTTTACA 60.668 55.000 0.00 0.00 0.00 2.41
52 53 0.668401 ACCGTGCGTGCCTACTTTAC 60.668 55.000 0.00 0.00 0.00 2.01
53 54 0.388907 GACCGTGCGTGCCTACTTTA 60.389 55.000 0.00 0.00 0.00 1.85
54 55 1.666872 GACCGTGCGTGCCTACTTT 60.667 57.895 0.00 0.00 0.00 2.66
98 99 1.535015 CCAACGCCGCTTTCTCAAAAA 60.535 47.619 0.00 0.00 0.00 1.94
99 100 0.030101 CCAACGCCGCTTTCTCAAAA 59.970 50.000 0.00 0.00 0.00 2.44
100 101 1.098712 ACCAACGCCGCTTTCTCAAA 61.099 50.000 0.00 0.00 0.00 2.69
101 102 1.098712 AACCAACGCCGCTTTCTCAA 61.099 50.000 0.00 0.00 0.00 3.02
102 103 1.503818 GAACCAACGCCGCTTTCTCA 61.504 55.000 0.00 0.00 0.00 3.27
103 104 1.206831 GAACCAACGCCGCTTTCTC 59.793 57.895 0.00 0.00 0.00 2.87
104 105 2.258726 GGAACCAACGCCGCTTTCT 61.259 57.895 0.00 0.00 0.00 2.52
105 106 2.183858 GAGGAACCAACGCCGCTTTC 62.184 60.000 0.00 0.00 0.00 2.62
106 107 2.203294 AGGAACCAACGCCGCTTT 60.203 55.556 0.00 0.00 0.00 3.51
107 108 2.668550 GAGGAACCAACGCCGCTT 60.669 61.111 0.00 0.00 0.00 4.68
108 109 4.699522 GGAGGAACCAACGCCGCT 62.700 66.667 0.00 0.00 38.79 5.52
149 150 2.202932 CGCTAGCGCCATTGGACT 60.203 61.111 26.07 5.39 0.00 3.85
154 155 2.819595 CCACACGCTAGCGCCATT 60.820 61.111 35.63 14.89 44.19 3.16
338 351 2.159085 GGAGCACTACGCCTACTGATTT 60.159 50.000 0.00 0.00 44.04 2.17
358 371 2.511600 GATCCAGGCAACGGACGG 60.512 66.667 0.00 0.00 41.02 4.79
360 373 0.876342 GATCGATCCAGGCAACGGAC 60.876 60.000 14.76 0.00 41.02 4.79
361 374 1.441729 GATCGATCCAGGCAACGGA 59.558 57.895 14.76 0.00 46.39 4.69
363 376 0.319040 ATCGATCGATCCAGGCAACG 60.319 55.000 24.60 6.20 46.39 4.10
453 474 3.132139 ATCGCAGCAAGGCAGCAG 61.132 61.111 6.42 0.00 41.08 4.24
454 475 3.436924 CATCGCAGCAAGGCAGCA 61.437 61.111 6.42 0.00 41.08 4.41
456 477 1.093496 TCATCATCGCAGCAAGGCAG 61.093 55.000 0.00 0.00 0.00 4.85
457 478 0.464916 ATCATCATCGCAGCAAGGCA 60.465 50.000 0.00 0.00 0.00 4.75
458 479 1.196354 GTATCATCATCGCAGCAAGGC 59.804 52.381 0.00 0.00 0.00 4.35
459 480 1.458445 CGTATCATCATCGCAGCAAGG 59.542 52.381 0.00 0.00 0.00 3.61
466 487 2.590073 CTGGAGTCGTATCATCATCGC 58.410 52.381 0.00 0.00 0.00 4.58
572 613 1.555533 CCCTTTCTAGCCCTCGTTTCT 59.444 52.381 0.00 0.00 0.00 2.52
657 699 0.402861 ACAACTTGGAGGGGAAGGGA 60.403 55.000 0.00 0.00 0.00 4.20
659 701 0.771127 TCACAACTTGGAGGGGAAGG 59.229 55.000 0.00 0.00 0.00 3.46
660 702 2.887151 ATCACAACTTGGAGGGGAAG 57.113 50.000 0.00 0.00 0.00 3.46
661 703 3.202151 GGATATCACAACTTGGAGGGGAA 59.798 47.826 4.83 0.00 0.00 3.97
663 705 2.780010 AGGATATCACAACTTGGAGGGG 59.220 50.000 4.83 0.00 0.00 4.79
664 706 4.455606 GAAGGATATCACAACTTGGAGGG 58.544 47.826 4.83 0.00 0.00 4.30
665 707 4.455606 GGAAGGATATCACAACTTGGAGG 58.544 47.826 4.83 0.00 0.00 4.30
755 824 2.203640 AGCACAGACACCTCCCGA 60.204 61.111 0.00 0.00 0.00 5.14
772 853 1.002624 GCAGGTTTGGTCCGATCCA 60.003 57.895 8.69 0.00 35.49 3.41
806 905 0.038526 CCGTCCGTTGTCAGCTTAGT 60.039 55.000 0.00 0.00 0.00 2.24
817 916 2.263540 CCGATTGGTCCGTCCGTT 59.736 61.111 0.00 0.00 39.52 4.44
818 917 3.766691 CCCGATTGGTCCGTCCGT 61.767 66.667 0.00 0.00 39.52 4.69
849 948 0.176910 GCTGAGCTAACCTGGACTCC 59.823 60.000 0.00 0.00 0.00 3.85
880 979 7.393515 ACCCAAGTATTGTTAGGATCAAAACTC 59.606 37.037 9.88 1.26 46.99 3.01
892 991 3.443052 TCGGAGGACCCAAGTATTGTTA 58.557 45.455 0.00 0.00 46.99 2.41
894 993 1.946984 TCGGAGGACCCAAGTATTGT 58.053 50.000 0.00 0.00 46.99 2.71
900 999 0.036294 GGTCTTTCGGAGGACCCAAG 60.036 60.000 14.11 0.94 44.35 3.61
912 1011 3.558109 CCTCCTCTCTGTTTGGGTCTTTC 60.558 52.174 0.00 0.00 0.00 2.62
913 1012 2.373502 CCTCCTCTCTGTTTGGGTCTTT 59.626 50.000 0.00 0.00 0.00 2.52
927 1026 1.380650 GTTCCTCGGCTCCTCCTCT 60.381 63.158 0.00 0.00 0.00 3.69
938 1037 2.202272 GTCGACCGTCGTTCCTCG 60.202 66.667 19.89 0.00 41.35 4.63
989 1088 0.460987 CGCCGCCATCTCTTCTTCTT 60.461 55.000 0.00 0.00 0.00 2.52
1191 1301 1.246056 CGTACTCCCGGAAGTGGTCA 61.246 60.000 2.33 0.00 0.00 4.02
1286 1396 1.413077 TGTATCGGCGAGAGAGAGAGA 59.587 52.381 17.22 0.00 0.00 3.10
1287 1397 1.872388 TGTATCGGCGAGAGAGAGAG 58.128 55.000 17.22 0.00 0.00 3.20
1288 1398 2.552599 ATGTATCGGCGAGAGAGAGA 57.447 50.000 17.22 0.00 0.00 3.10
1292 1418 0.516001 GCGTATGTATCGGCGAGAGA 59.484 55.000 17.22 10.38 0.00 3.10
1489 1615 2.755876 TCACCTCTCTGCGGCGAT 60.756 61.111 12.98 0.00 0.00 4.58
1520 1649 1.742831 GGCATTGATTCGGTGCTGTTA 59.257 47.619 11.36 0.00 38.83 2.41
1523 1652 1.033746 AGGGCATTGATTCGGTGCTG 61.034 55.000 11.36 0.00 38.83 4.41
1525 1654 1.728490 GGAGGGCATTGATTCGGTGC 61.728 60.000 4.92 4.92 38.12 5.01
1548 1677 3.304726 GCAAACGGAAGGGAGAGAAAAAG 60.305 47.826 0.00 0.00 0.00 2.27
1550 1679 2.158667 AGCAAACGGAAGGGAGAGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
1553 1682 0.608640 GAGCAAACGGAAGGGAGAGA 59.391 55.000 0.00 0.00 0.00 3.10
1555 1684 1.292223 CGAGCAAACGGAAGGGAGA 59.708 57.895 0.00 0.00 0.00 3.71
1557 1686 2.358247 GCGAGCAAACGGAAGGGA 60.358 61.111 0.00 0.00 0.00 4.20
1598 1727 3.882326 CCCGCTGATCATGCCCCT 61.882 66.667 0.00 0.00 0.00 4.79
1602 1731 2.031516 CGATCCCCGCTGATCATGC 61.032 63.158 0.00 1.25 41.00 4.06
1663 1792 4.443658 AGGAGAAGGAAGGAGAAGGAAAT 58.556 43.478 0.00 0.00 0.00 2.17
1678 1807 0.108424 CACGCAAGGAGGAGGAGAAG 60.108 60.000 0.00 0.00 46.39 2.85
1680 1809 0.832135 AACACGCAAGGAGGAGGAGA 60.832 55.000 0.00 0.00 46.39 3.71
1681 1810 0.895530 TAACACGCAAGGAGGAGGAG 59.104 55.000 0.00 0.00 46.39 3.69
1682 1811 0.895530 CTAACACGCAAGGAGGAGGA 59.104 55.000 0.00 0.00 46.39 3.71
1684 1813 0.741221 GGCTAACACGCAAGGAGGAG 60.741 60.000 0.00 0.00 46.39 3.69
1685 1814 1.295423 GGCTAACACGCAAGGAGGA 59.705 57.895 0.00 0.00 46.39 3.71
1686 1815 1.745489 GGGCTAACACGCAAGGAGG 60.745 63.158 0.00 0.00 46.39 4.30
1704 1833 1.117142 TCCCCTTATCCTAACCCGCG 61.117 60.000 0.00 0.00 0.00 6.46
1720 1849 1.599797 CCCGCCCATTAACGATCCC 60.600 63.158 0.00 0.00 0.00 3.85
1959 2118 5.242393 GCCGGAGTGGTAACTGATATAAGTA 59.758 44.000 5.05 0.00 41.21 2.24
1963 2167 2.895404 GGCCGGAGTGGTAACTGATATA 59.105 50.000 5.05 0.00 41.21 0.86
1964 2168 1.692519 GGCCGGAGTGGTAACTGATAT 59.307 52.381 5.05 0.00 41.21 1.63
2056 2265 7.049799 AGAGAACTCTGGTTATATCTTCAGC 57.950 40.000 3.39 0.00 38.75 4.26
2070 2283 6.867816 GGCATATGATTGACTAGAGAACTCTG 59.132 42.308 6.97 7.04 40.71 3.35
2087 2306 8.076910 ACTTTAACCATGAAATTGGCATATGA 57.923 30.769 6.97 0.00 40.68 2.15
2157 2377 0.409092 AACCACCATTGATGCTCCCA 59.591 50.000 0.00 0.00 0.00 4.37
2250 2471 0.604073 TGGAACGCTTGGTCGTATCA 59.396 50.000 0.00 0.00 42.46 2.15
2251 2472 1.278238 CTGGAACGCTTGGTCGTATC 58.722 55.000 0.00 0.00 42.46 2.24
2252 2473 0.739813 GCTGGAACGCTTGGTCGTAT 60.740 55.000 0.00 0.00 42.46 3.06
2253 2474 1.373748 GCTGGAACGCTTGGTCGTA 60.374 57.895 0.00 0.00 42.46 3.43
2254 2475 2.665185 GCTGGAACGCTTGGTCGT 60.665 61.111 0.00 0.00 45.58 4.34
2255 2476 3.777925 CGCTGGAACGCTTGGTCG 61.778 66.667 0.00 0.00 0.00 4.79
2256 2477 3.423154 CCGCTGGAACGCTTGGTC 61.423 66.667 0.00 0.00 0.00 4.02
2258 2479 4.697756 TCCCGCTGGAACGCTTGG 62.698 66.667 0.00 0.00 37.86 3.61
2259 2480 2.668212 TTCCCGCTGGAACGCTTG 60.668 61.111 5.36 0.00 45.88 4.01
2355 2579 2.108514 CCGATGCCGTGCACTGATT 61.109 57.895 16.19 0.00 43.04 2.57
2361 2585 1.298157 CTCTTTTCCGATGCCGTGCA 61.298 55.000 1.01 1.01 44.86 4.57
2436 2661 0.679505 TTCCCCAGAGTCGTTGACAG 59.320 55.000 0.00 0.00 34.60 3.51
2452 2677 7.467811 GCAACATGCAGCACCTATATATATTCC 60.468 40.741 0.00 0.00 44.26 3.01
2453 2678 7.412853 GCAACATGCAGCACCTATATATATTC 58.587 38.462 0.00 0.00 44.26 1.75
2454 2679 7.325660 GCAACATGCAGCACCTATATATATT 57.674 36.000 0.00 0.00 44.26 1.28
2492 2727 0.730265 TTCAAGCAAACGCAACGAGT 59.270 45.000 0.00 0.00 0.00 4.18
2497 2732 2.100584 AGACCAATTCAAGCAAACGCAA 59.899 40.909 0.00 0.00 0.00 4.85
2562 2798 3.604875 ATCATTTGGAAAGCAGCAAGG 57.395 42.857 0.00 0.00 0.00 3.61
2596 2833 3.063997 ACGAGAAAAGTTCAGTGCAACAG 59.936 43.478 0.00 0.00 41.43 3.16
2627 2864 8.720562 GGGAAAAGTCAAAATGTTTTATCATGG 58.279 33.333 0.00 0.00 0.00 3.66
2628 2865 8.434661 CGGGAAAAGTCAAAATGTTTTATCATG 58.565 33.333 0.00 0.00 0.00 3.07
2629 2866 8.147704 ACGGGAAAAGTCAAAATGTTTTATCAT 58.852 29.630 0.00 0.00 0.00 2.45
2630 2867 7.436673 CACGGGAAAAGTCAAAATGTTTTATCA 59.563 33.333 0.00 0.00 0.00 2.15
2631 2868 7.568679 GCACGGGAAAAGTCAAAATGTTTTATC 60.569 37.037 0.00 0.00 0.00 1.75
2632 2869 6.201997 GCACGGGAAAAGTCAAAATGTTTTAT 59.798 34.615 0.00 0.00 0.00 1.40
2633 2870 5.520649 GCACGGGAAAAGTCAAAATGTTTTA 59.479 36.000 0.00 0.00 0.00 1.52
2634 2871 4.331443 GCACGGGAAAAGTCAAAATGTTTT 59.669 37.500 0.00 0.00 0.00 2.43
2636 2873 3.118956 TGCACGGGAAAAGTCAAAATGTT 60.119 39.130 0.00 0.00 0.00 2.71
2638 2875 3.052036 CTGCACGGGAAAAGTCAAAATG 58.948 45.455 0.00 0.00 0.00 2.32
2639 2876 2.955660 TCTGCACGGGAAAAGTCAAAAT 59.044 40.909 0.00 0.00 0.00 1.82
2640 2877 2.370349 TCTGCACGGGAAAAGTCAAAA 58.630 42.857 0.00 0.00 0.00 2.44
2641 2878 2.045561 TCTGCACGGGAAAAGTCAAA 57.954 45.000 0.00 0.00 0.00 2.69
2654 2891 7.035004 TGCAAATCCAACTATTATTTCTGCAC 58.965 34.615 0.00 0.00 0.00 4.57
2817 3056 7.040755 TGTGGAGGTTTCTTTATACACACATTG 60.041 37.037 0.00 0.00 33.23 2.82
2818 3057 7.001674 TGTGGAGGTTTCTTTATACACACATT 58.998 34.615 0.00 0.00 33.23 2.71
2825 3064 7.829706 AGAGGAATTGTGGAGGTTTCTTTATAC 59.170 37.037 0.00 0.00 0.00 1.47
2877 3121 8.606040 TTGGCCAATTCTTTTTCTCAAATAAG 57.394 30.769 16.05 0.00 0.00 1.73
2889 3133 3.579586 TCTCTGCATTTGGCCAATTCTTT 59.420 39.130 21.26 0.00 43.89 2.52
2910 3158 1.291132 GCGCCAGATGTTTACCTCTC 58.709 55.000 0.00 0.00 0.00 3.20
2918 3166 1.069765 CGATAGGGCGCCAGATGTT 59.930 57.895 30.85 5.96 0.00 2.71
3045 3308 4.382320 TACGTTGTGCCGGGAGCC 62.382 66.667 2.18 0.00 42.71 4.70
3046 3309 2.216750 TACTACGTTGTGCCGGGAGC 62.217 60.000 13.03 0.00 44.14 4.70
3047 3310 0.179145 CTACTACGTTGTGCCGGGAG 60.179 60.000 13.03 0.00 0.00 4.30
3048 3311 1.597797 CCTACTACGTTGTGCCGGGA 61.598 60.000 13.03 0.00 0.00 5.14
3049 3312 1.153706 CCTACTACGTTGTGCCGGG 60.154 63.158 13.03 6.01 0.00 5.73
3050 3313 1.153706 CCCTACTACGTTGTGCCGG 60.154 63.158 13.03 9.80 0.00 6.13
3140 3413 2.834968 GTATTGCAGGCAGGGGGC 60.835 66.667 0.00 0.00 43.74 5.80
3141 3414 2.516930 CGTATTGCAGGCAGGGGG 60.517 66.667 0.00 0.00 0.00 5.40
3142 3415 2.114670 CACGTATTGCAGGCAGGGG 61.115 63.158 0.00 0.00 0.00 4.79
3143 3416 3.501396 CACGTATTGCAGGCAGGG 58.499 61.111 0.00 0.00 0.00 4.45
3158 3440 2.802787 AGAGGTAGCATATCACGCAC 57.197 50.000 0.00 0.00 0.00 5.34
3167 3449 1.625315 TGTGCTGTGAAGAGGTAGCAT 59.375 47.619 0.00 0.00 46.48 3.79
3199 3481 1.838913 CAACTCGCACCCAAACAAAG 58.161 50.000 0.00 0.00 0.00 2.77
3420 3736 2.999063 ACCCGTACGGTGAAGGGG 60.999 66.667 31.24 17.08 46.09 4.79
3447 3923 4.338682 CAGTAGACAGTAGTACATGGGGAC 59.661 50.000 2.52 0.00 0.00 4.46
3461 3944 6.167685 ACAGTAGACAGTAGACAGTAGACAG 58.832 44.000 0.00 0.00 0.00 3.51
3462 3945 6.014413 AGACAGTAGACAGTAGACAGTAGACA 60.014 42.308 0.00 0.00 0.00 3.41
3463 3946 6.400568 AGACAGTAGACAGTAGACAGTAGAC 58.599 44.000 0.00 0.00 0.00 2.59
3464 3947 6.608539 AGACAGTAGACAGTAGACAGTAGA 57.391 41.667 0.00 0.00 0.00 2.59
3465 3948 7.490079 CAGTAGACAGTAGACAGTAGACAGTAG 59.510 44.444 0.00 0.00 0.00 2.57
3466 3949 7.039152 ACAGTAGACAGTAGACAGTAGACAGTA 60.039 40.741 0.00 0.00 0.00 2.74
3467 3950 6.167685 CAGTAGACAGTAGACAGTAGACAGT 58.832 44.000 0.00 0.00 0.00 3.55
3468 3951 6.167685 ACAGTAGACAGTAGACAGTAGACAG 58.832 44.000 0.00 0.00 0.00 3.51
3469 3952 6.111669 ACAGTAGACAGTAGACAGTAGACA 57.888 41.667 0.00 0.00 0.00 3.41
3470 3953 7.765360 ACATACAGTAGACAGTAGACAGTAGAC 59.235 40.741 0.00 0.00 0.00 2.59
3471 3954 7.849160 ACATACAGTAGACAGTAGACAGTAGA 58.151 38.462 0.00 0.00 0.00 2.59
3472 3955 9.767228 ATACATACAGTAGACAGTAGACAGTAG 57.233 37.037 0.00 0.00 35.85 2.57
3473 3956 9.761504 GATACATACAGTAGACAGTAGACAGTA 57.238 37.037 0.00 0.00 35.85 2.74
3474 3957 8.265764 TGATACATACAGTAGACAGTAGACAGT 58.734 37.037 0.00 0.00 35.85 3.55
3475 3958 8.664211 TGATACATACAGTAGACAGTAGACAG 57.336 38.462 0.00 0.00 35.85 3.51
3476 3959 9.057089 CATGATACATACAGTAGACAGTAGACA 57.943 37.037 0.00 0.00 35.85 3.41
3477 3960 9.058174 ACATGATACATACAGTAGACAGTAGAC 57.942 37.037 0.00 0.00 35.85 2.59
3478 3961 9.274206 GACATGATACATACAGTAGACAGTAGA 57.726 37.037 0.00 0.00 35.85 2.59
3479 3962 9.057089 TGACATGATACATACAGTAGACAGTAG 57.943 37.037 0.00 0.00 35.85 2.57
3480 3963 8.974060 TGACATGATACATACAGTAGACAGTA 57.026 34.615 0.00 0.00 35.85 2.74
3481 3964 7.558081 ACTGACATGATACATACAGTAGACAGT 59.442 37.037 0.00 0.00 36.94 3.55
3542 4026 1.524621 CCCAGATCCCACGATGTGC 60.525 63.158 0.00 0.00 38.23 4.57
3584 4068 2.598394 TCTTGCACCTGCCCAAGC 60.598 61.111 0.00 0.00 41.18 4.01
3605 4089 4.028993 ACGGAACTGGGACATTAACAAT 57.971 40.909 0.00 0.00 38.20 2.71
3623 4107 8.558973 ACTATAGCACTACTACCTTATTACGG 57.441 38.462 0.00 0.00 32.32 4.02
3659 4146 3.668141 TGTACCCATCATTGCCTGATT 57.332 42.857 0.00 0.00 42.07 2.57
3660 4147 3.668141 TTGTACCCATCATTGCCTGAT 57.332 42.857 0.00 0.00 45.78 2.90
3661 4148 3.448093 TTTGTACCCATCATTGCCTGA 57.552 42.857 0.00 0.00 38.53 3.86
3662 4149 3.676873 GCTTTTGTACCCATCATTGCCTG 60.677 47.826 0.00 0.00 0.00 4.85
3664 4151 2.233431 TGCTTTTGTACCCATCATTGCC 59.767 45.455 0.00 0.00 0.00 4.52
3665 4152 3.591196 TGCTTTTGTACCCATCATTGC 57.409 42.857 0.00 0.00 0.00 3.56
3666 4153 5.481105 ACAATGCTTTTGTACCCATCATTG 58.519 37.500 16.44 16.44 42.68 2.82
3667 4154 5.743636 ACAATGCTTTTGTACCCATCATT 57.256 34.783 4.11 0.00 0.00 2.57
3668 4155 5.743636 AACAATGCTTTTGTACCCATCAT 57.256 34.783 6.11 0.00 31.50 2.45
3669 4156 5.537188 GAAACAATGCTTTTGTACCCATCA 58.463 37.500 6.11 0.00 31.50 3.07
3670 4157 4.621034 CGAAACAATGCTTTTGTACCCATC 59.379 41.667 6.11 1.63 31.50 3.51
3671 4158 4.038642 ACGAAACAATGCTTTTGTACCCAT 59.961 37.500 6.11 0.00 31.50 4.00
3672 4159 3.381908 ACGAAACAATGCTTTTGTACCCA 59.618 39.130 6.11 0.00 31.50 4.51
3675 4162 6.356190 GTCACTACGAAACAATGCTTTTGTAC 59.644 38.462 6.11 0.00 31.40 2.90
3676 4163 6.423862 GTCACTACGAAACAATGCTTTTGTA 58.576 36.000 6.11 2.08 31.40 2.41
3677 4164 5.270853 GTCACTACGAAACAATGCTTTTGT 58.729 37.500 0.00 0.47 33.21 2.83
3678 4165 5.789774 GTCACTACGAAACAATGCTTTTG 57.210 39.130 0.00 0.00 0.00 2.44
3739 4234 1.225704 CTCAGGGTCAGCATTCCCC 59.774 63.158 6.51 0.18 44.40 4.81
3741 4236 1.204146 TACCTCAGGGTCAGCATTCC 58.796 55.000 0.00 0.00 45.98 3.01
3742 4237 3.350219 TTTACCTCAGGGTCAGCATTC 57.650 47.619 0.00 0.00 45.98 2.67
3777 4280 5.355071 TGTCTATTGTACTACACCACCGTAG 59.645 44.000 0.00 0.00 43.76 3.51
3790 4293 9.913451 CTAGAAGTACGTAGTTGTCTATTGTAC 57.087 37.037 20.07 2.18 37.78 2.90
3807 4310 4.581409 GGATCAGTCCTGGTCTAGAAGTAC 59.419 50.000 7.45 0.00 40.46 2.73
3808 4311 4.686396 CGGATCAGTCCTGGTCTAGAAGTA 60.686 50.000 7.45 0.00 42.73 2.24
3809 4312 3.637769 GGATCAGTCCTGGTCTAGAAGT 58.362 50.000 7.45 0.00 40.46 3.01
3810 4313 2.621055 CGGATCAGTCCTGGTCTAGAAG 59.379 54.545 7.45 0.00 42.73 2.85
3811 4314 2.025226 ACGGATCAGTCCTGGTCTAGAA 60.025 50.000 7.45 0.00 42.73 2.10
3812 4315 1.564818 ACGGATCAGTCCTGGTCTAGA 59.435 52.381 7.45 0.00 42.73 2.43
3813 4316 2.060050 ACGGATCAGTCCTGGTCTAG 57.940 55.000 7.45 5.13 42.73 2.43
3814 4317 2.526888 AACGGATCAGTCCTGGTCTA 57.473 50.000 7.45 0.00 42.73 2.59
3817 4320 0.824759 GCTAACGGATCAGTCCTGGT 59.175 55.000 0.00 0.00 42.73 4.00
3818 4321 1.115467 AGCTAACGGATCAGTCCTGG 58.885 55.000 0.00 0.00 42.73 4.45
3819 4322 1.751351 TCAGCTAACGGATCAGTCCTG 59.249 52.381 0.00 6.90 42.73 3.86
3907 4414 7.254319 CGACTATGTGTGTTCAAACTGTTTACT 60.254 37.037 5.31 0.00 0.00 2.24
3908 4415 6.844279 CGACTATGTGTGTTCAAACTGTTTAC 59.156 38.462 5.31 2.48 0.00 2.01
3909 4416 6.535865 ACGACTATGTGTGTTCAAACTGTTTA 59.464 34.615 5.31 0.00 0.00 2.01
3921 4428 1.400846 CGAGGCTACGACTATGTGTGT 59.599 52.381 0.00 0.00 35.09 3.72
3923 4430 1.747709 ACGAGGCTACGACTATGTGT 58.252 50.000 12.16 0.00 37.03 3.72
3924 4431 2.223611 CCTACGAGGCTACGACTATGTG 59.776 54.545 12.16 0.00 37.03 3.21
3937 4444 0.244450 TACCAACAACGCCTACGAGG 59.756 55.000 0.00 0.00 43.93 4.63
3938 4445 1.068055 ACTACCAACAACGCCTACGAG 60.068 52.381 0.00 0.00 43.93 4.18
3974 4545 1.342819 CTGCCCCATCAGCTACTACTC 59.657 57.143 0.00 0.00 0.00 2.59
3976 4547 1.123928 ACTGCCCCATCAGCTACTAC 58.876 55.000 0.00 0.00 37.59 2.73
3977 4548 1.879575 AACTGCCCCATCAGCTACTA 58.120 50.000 0.00 0.00 37.59 1.82
3978 4549 1.486726 GTAACTGCCCCATCAGCTACT 59.513 52.381 0.00 0.00 37.59 2.57
4106 4685 2.076863 GAAAACCCATCAGTCCAGTCG 58.923 52.381 0.00 0.00 0.00 4.18
4293 4881 4.702274 AAGGCCACACCCCATGCC 62.702 66.667 5.01 0.00 44.35 4.40
4294 4882 3.384532 CAAGGCCACACCCCATGC 61.385 66.667 5.01 0.00 40.58 4.06
4295 4883 3.384532 GCAAGGCCACACCCCATG 61.385 66.667 5.01 0.00 40.58 3.66
4450 5066 5.370679 GCTGCCCATTCCAATAAATTTCAT 58.629 37.500 0.00 0.00 0.00 2.57
4477 5093 0.457853 TGCGCCAACGATCTGTACTC 60.458 55.000 4.18 0.00 43.93 2.59
4530 5146 4.854291 CAGAAACGACTCAAGTAGTAGCAG 59.146 45.833 0.00 0.00 39.07 4.24
4531 5147 4.517832 TCAGAAACGACTCAAGTAGTAGCA 59.482 41.667 0.00 0.00 39.07 3.49
4532 5148 5.044428 TCAGAAACGACTCAAGTAGTAGC 57.956 43.478 0.00 0.00 39.07 3.58
4537 5153 5.524971 TCCTTTCAGAAACGACTCAAGTA 57.475 39.130 0.00 0.00 0.00 2.24
4546 5162 8.325282 GGTTTGTAATTTTTCCTTTCAGAAACG 58.675 33.333 0.00 0.00 35.53 3.60
4554 5170 4.684877 ACGCGGTTTGTAATTTTTCCTTT 58.315 34.783 12.47 0.00 0.00 3.11
4572 5190 0.238289 AAATGCAGAAACCTGACGCG 59.762 50.000 3.53 3.53 33.56 6.01
4575 5193 5.147162 CGAGTAAAAATGCAGAAACCTGAC 58.853 41.667 0.00 0.00 33.56 3.51
4620 5238 2.869233 TTGCACCAAAGAGAAAGCAC 57.131 45.000 0.00 0.00 0.00 4.40
4622 5240 4.571984 ACAAATTTGCACCAAAGAGAAAGC 59.428 37.500 18.12 0.00 36.76 3.51
4633 5251 7.651704 AGTCACAAGTATAAACAAATTTGCACC 59.348 33.333 18.12 1.05 0.00 5.01
4640 5258 5.772672 TGGCCAGTCACAAGTATAAACAAAT 59.227 36.000 0.00 0.00 0.00 2.32
4647 5265 2.640332 TGGTTGGCCAGTCACAAGTATA 59.360 45.455 5.11 0.00 40.46 1.47
4648 5266 1.423541 TGGTTGGCCAGTCACAAGTAT 59.576 47.619 5.11 0.00 40.46 2.12
4649 5267 0.840617 TGGTTGGCCAGTCACAAGTA 59.159 50.000 5.11 0.00 40.46 2.24
4650 5268 1.612513 TGGTTGGCCAGTCACAAGT 59.387 52.632 5.11 0.00 40.46 3.16
4660 5278 0.598065 CTAAACACAGCTGGTTGGCC 59.402 55.000 19.93 0.00 0.00 5.36
4680 5314 0.249447 GGGTGCTTGGTTGCAAGAAC 60.249 55.000 0.00 0.00 45.12 3.01
4690 5324 4.280677 TGTTTTCATAAAGAGGGTGCTTGG 59.719 41.667 0.00 0.00 0.00 3.61
4698 5332 8.718734 GGTACAAGTACTGTTTTCATAAAGAGG 58.281 37.037 9.94 0.00 38.57 3.69
4699 5333 9.268268 TGGTACAAGTACTGTTTTCATAAAGAG 57.732 33.333 9.94 0.00 39.64 2.85
4715 5351 7.443477 TGCAGTACAAAATACTGGTACAAGTA 58.557 34.615 12.58 12.58 43.68 2.24
4717 5353 6.795098 TGCAGTACAAAATACTGGTACAAG 57.205 37.500 14.26 0.00 43.68 3.16
4753 7226 5.780282 TCTCAAATGAACACTCCTTCCTCTA 59.220 40.000 0.00 0.00 0.00 2.43
4796 7310 3.751479 ATGTACGAGCAATCATGGCTA 57.249 42.857 0.00 0.00 42.78 3.93
4804 7318 5.774498 TCAGAGACATATGTACGAGCAAT 57.226 39.130 8.71 0.00 0.00 3.56
4808 7322 5.948992 TGGATCAGAGACATATGTACGAG 57.051 43.478 8.71 5.28 0.00 4.18
4810 7324 6.259550 TCATGGATCAGAGACATATGTACG 57.740 41.667 8.71 0.00 0.00 3.67
4829 7343 2.475466 GCACGAGCCCACCATCATG 61.475 63.158 0.00 0.00 33.58 3.07
4832 7346 2.045926 AAGCACGAGCCCACCATC 60.046 61.111 0.00 0.00 43.56 3.51
4856 7370 6.762187 GCCTTACTAAAAAGACAGATAGGGAC 59.238 42.308 0.00 0.00 0.00 4.46
4857 7371 6.406624 CGCCTTACTAAAAAGACAGATAGGGA 60.407 42.308 0.00 0.00 0.00 4.20
4865 7379 3.997762 TCAGCGCCTTACTAAAAAGACA 58.002 40.909 2.29 0.00 0.00 3.41
4866 7380 4.630069 TCATCAGCGCCTTACTAAAAAGAC 59.370 41.667 2.29 0.00 0.00 3.01
4971 7485 9.696917 GTGGAATAAAACAAGAGAAATGACAAT 57.303 29.630 0.00 0.00 0.00 2.71
5004 7519 3.492656 GCGGATATACAAAGGAGCAGTCA 60.493 47.826 0.00 0.00 0.00 3.41
5024 7539 2.095059 ACTGCTGGCATTTTAAAGAGCG 60.095 45.455 0.00 0.00 0.00 5.03
5037 7552 1.949525 CATATGTTGGGTACTGCTGGC 59.050 52.381 0.00 0.00 0.00 4.85
5056 7571 9.533253 CTCATACACACATACAGATCATTTACA 57.467 33.333 0.00 0.00 0.00 2.41
5057 7572 9.534565 ACTCATACACACATACAGATCATTTAC 57.465 33.333 0.00 0.00 0.00 2.01
5060 7575 7.559486 ACACTCATACACACATACAGATCATT 58.441 34.615 0.00 0.00 0.00 2.57
5063 7578 8.926715 TTTACACTCATACACACATACAGATC 57.073 34.615 0.00 0.00 0.00 2.75
5065 7580 8.527810 TCATTTACACTCATACACACATACAGA 58.472 33.333 0.00 0.00 0.00 3.41
5066 7581 8.702163 TCATTTACACTCATACACACATACAG 57.298 34.615 0.00 0.00 0.00 2.74
5068 7583 9.534565 AGATCATTTACACTCATACACACATAC 57.465 33.333 0.00 0.00 0.00 2.39
5069 7584 9.533253 CAGATCATTTACACTCATACACACATA 57.467 33.333 0.00 0.00 0.00 2.29
5070 7585 8.260114 TCAGATCATTTACACTCATACACACAT 58.740 33.333 0.00 0.00 0.00 3.21
5071 7586 7.610865 TCAGATCATTTACACTCATACACACA 58.389 34.615 0.00 0.00 0.00 3.72
5072 7587 8.479313 TTCAGATCATTTACACTCATACACAC 57.521 34.615 0.00 0.00 0.00 3.82
5073 7588 9.671279 ATTTCAGATCATTTACACTCATACACA 57.329 29.630 0.00 0.00 0.00 3.72
5110 7635 8.859236 AACTTCTAAAATTAAGGGGTGACTAC 57.141 34.615 0.00 0.00 0.00 2.73
5129 7654 6.716628 TGAAGATTGCTGGTATTCAAACTTCT 59.283 34.615 18.67 0.72 44.87 2.85
5130 7655 6.913170 TGAAGATTGCTGGTATTCAAACTTC 58.087 36.000 14.10 14.10 44.86 3.01
5218 7743 3.807622 TGTCTGACTTTGGTCGACAATTC 59.192 43.478 18.91 8.30 44.34 2.17
5253 7778 7.776030 TCAGTCAGTTTTAAAATAAGTGGGTCA 59.224 33.333 3.52 0.00 0.00 4.02
5269 7802 8.658609 CAAACATTTCATTGTTTCAGTCAGTTT 58.341 29.630 0.00 0.00 45.54 2.66
5287 7820 8.676401 GGCCTGCATATAAATTTTCAAACATTT 58.324 29.630 0.00 0.00 0.00 2.32
5315 7848 8.906867 AGTAGTATTGCTGCATTTGATTGTAAT 58.093 29.630 1.84 0.00 31.85 1.89
5349 7882 2.310538 GAAGGGGATGTTTGGCCATAG 58.689 52.381 6.09 0.00 0.00 2.23
5396 7929 2.618816 GGATTCTGGCCACTTGTCATGA 60.619 50.000 0.00 0.00 0.00 3.07
5476 8009 1.117142 TGGAAAGAACCCTCGGTCGT 61.117 55.000 0.00 0.00 33.12 4.34
5679 8212 8.031864 TGAGTTTACTGCAAAGTTTGATCAAAA 58.968 29.630 22.07 10.31 29.58 2.44
5687 8220 4.342092 AGGCATGAGTTTACTGCAAAGTTT 59.658 37.500 0.00 0.00 37.64 2.66
5695 8228 3.755378 AGCAGAAAGGCATGAGTTTACTG 59.245 43.478 0.00 6.20 35.83 2.74
5708 8241 3.441222 TGCAACATATGTCAGCAGAAAGG 59.559 43.478 24.06 2.73 35.19 3.11
5757 8345 1.078759 CGTTTGTAGCCTCAGCCTCG 61.079 60.000 0.00 0.00 41.25 4.63
5776 8364 3.181502 GCTGAAGCTTCTTGGTTATCTGC 60.182 47.826 26.09 9.80 36.40 4.26
5793 8381 1.806542 GATCTTTCAACAGGCGCTGAA 59.193 47.619 7.64 6.53 35.18 3.02
5902 8490 1.917872 TTTGTATTCCTTTGCGGGCT 58.082 45.000 0.00 0.00 0.00 5.19
5904 8492 5.961272 AGTATTTTTGTATTCCTTTGCGGG 58.039 37.500 0.00 0.00 0.00 6.13
5905 8493 5.737290 CGAGTATTTTTGTATTCCTTTGCGG 59.263 40.000 0.00 0.00 0.00 5.69
5915 8503 8.504005 CCAGTCAAGAAACGAGTATTTTTGTAT 58.496 33.333 0.00 0.00 0.00 2.29
5919 8507 7.562454 TTCCAGTCAAGAAACGAGTATTTTT 57.438 32.000 0.00 0.00 0.00 1.94
5978 8566 9.028284 TGCAGAAATAGGAAAAGAATCAGAAAT 57.972 29.630 0.00 0.00 0.00 2.17
6045 8633 2.851263 TTCCATTTACTGGCGTGAGT 57.149 45.000 0.00 0.00 45.52 3.41
6056 8644 6.262273 GGACTTATTCTGGCGAATTCCATTTA 59.738 38.462 9.24 0.00 40.28 1.40
6098 8686 6.074729 CGTAGACATAGAGAAGACGACTACTG 60.075 46.154 0.00 0.00 0.00 2.74
6152 8740 7.827701 TCTCTATTCTGTAACAATCGAGTGTT 58.172 34.615 30.86 30.86 43.95 3.32
6170 8766 9.041354 AGTCCTACTGAAGAACATTTCTCTATT 57.959 33.333 0.00 0.00 39.61 1.73
6213 8809 3.104470 CGATGTCGTTCTCTCAGTGATG 58.896 50.000 0.00 0.00 34.11 3.07
6214 8810 3.412981 CGATGTCGTTCTCTCAGTGAT 57.587 47.619 0.00 0.00 34.11 3.06
6236 8832 5.663795 ATGCTAAGACAAACTATGCATCG 57.336 39.130 0.19 0.00 40.69 3.84
6254 8850 6.660521 TGAAGAAAATGATCCAACAGTATGCT 59.339 34.615 0.00 0.00 42.53 3.79
6255 8851 6.749118 GTGAAGAAAATGATCCAACAGTATGC 59.251 38.462 0.00 0.00 42.53 3.14
6256 8852 7.094248 TGGTGAAGAAAATGATCCAACAGTATG 60.094 37.037 0.00 0.00 46.00 2.39
6257 8853 6.947733 TGGTGAAGAAAATGATCCAACAGTAT 59.052 34.615 0.00 0.00 0.00 2.12
6258 8854 6.303054 TGGTGAAGAAAATGATCCAACAGTA 58.697 36.000 0.00 0.00 0.00 2.74
6259 8855 5.139727 TGGTGAAGAAAATGATCCAACAGT 58.860 37.500 0.00 0.00 0.00 3.55
6260 8856 5.242393 ACTGGTGAAGAAAATGATCCAACAG 59.758 40.000 0.00 0.00 42.96 3.16
6261 8857 5.139727 ACTGGTGAAGAAAATGATCCAACA 58.860 37.500 0.00 0.00 0.00 3.33
6262 8858 5.335976 GGACTGGTGAAGAAAATGATCCAAC 60.336 44.000 0.00 0.00 0.00 3.77
6263 8859 4.766891 GGACTGGTGAAGAAAATGATCCAA 59.233 41.667 0.00 0.00 0.00 3.53
6264 8860 4.202556 TGGACTGGTGAAGAAAATGATCCA 60.203 41.667 0.00 0.00 0.00 3.41
6265 8861 4.335416 TGGACTGGTGAAGAAAATGATCC 58.665 43.478 0.00 0.00 0.00 3.36
6266 8862 5.248640 TCTGGACTGGTGAAGAAAATGATC 58.751 41.667 0.00 0.00 0.00 2.92
6267 8863 5.246981 TCTGGACTGGTGAAGAAAATGAT 57.753 39.130 0.00 0.00 0.00 2.45
6268 8864 4.705110 TCTGGACTGGTGAAGAAAATGA 57.295 40.909 0.00 0.00 0.00 2.57
6269 8865 5.972107 ATTCTGGACTGGTGAAGAAAATG 57.028 39.130 0.00 0.00 32.72 2.32
6270 8866 6.070656 TCAATTCTGGACTGGTGAAGAAAAT 58.929 36.000 0.00 0.00 32.72 1.82
6271 8867 5.445069 TCAATTCTGGACTGGTGAAGAAAA 58.555 37.500 0.00 0.00 32.72 2.29
6272 8868 5.047566 TCAATTCTGGACTGGTGAAGAAA 57.952 39.130 0.00 0.00 32.72 2.52
6273 8869 4.705110 TCAATTCTGGACTGGTGAAGAA 57.295 40.909 0.00 0.00 33.45 2.52
6274 8870 4.916041 ATCAATTCTGGACTGGTGAAGA 57.084 40.909 0.00 0.00 0.00 2.87
6275 8871 5.587844 CCTTATCAATTCTGGACTGGTGAAG 59.412 44.000 0.00 0.00 0.00 3.02
6276 8872 5.250543 TCCTTATCAATTCTGGACTGGTGAA 59.749 40.000 0.00 0.00 0.00 3.18
6277 8873 4.782691 TCCTTATCAATTCTGGACTGGTGA 59.217 41.667 0.00 0.00 0.00 4.02
6278 8874 4.878397 GTCCTTATCAATTCTGGACTGGTG 59.122 45.833 0.00 0.00 42.63 4.17
6279 8875 4.383118 CGTCCTTATCAATTCTGGACTGGT 60.383 45.833 0.00 0.00 43.45 4.00
6280 8876 4.122776 CGTCCTTATCAATTCTGGACTGG 58.877 47.826 0.00 0.00 43.45 4.00
6281 8877 3.557595 GCGTCCTTATCAATTCTGGACTG 59.442 47.826 0.00 0.00 43.45 3.51
6282 8878 3.197766 TGCGTCCTTATCAATTCTGGACT 59.802 43.478 0.00 0.00 43.45 3.85
6283 8879 3.309954 GTGCGTCCTTATCAATTCTGGAC 59.690 47.826 0.00 0.00 42.53 4.02
6284 8880 3.055458 TGTGCGTCCTTATCAATTCTGGA 60.055 43.478 0.00 0.00 0.00 3.86
6285 8881 3.270027 TGTGCGTCCTTATCAATTCTGG 58.730 45.455 0.00 0.00 0.00 3.86
6286 8882 4.651994 GTTGTGCGTCCTTATCAATTCTG 58.348 43.478 0.00 0.00 0.00 3.02
6287 8883 3.370978 CGTTGTGCGTCCTTATCAATTCT 59.629 43.478 0.00 0.00 35.54 2.40
6288 8884 3.485216 CCGTTGTGCGTCCTTATCAATTC 60.485 47.826 0.00 0.00 39.32 2.17
6289 8885 2.418628 CCGTTGTGCGTCCTTATCAATT 59.581 45.455 0.00 0.00 39.32 2.32
6290 8886 2.006888 CCGTTGTGCGTCCTTATCAAT 58.993 47.619 0.00 0.00 39.32 2.57
6297 8893 0.179051 TTAAACCCGTTGTGCGTCCT 60.179 50.000 0.00 0.00 39.32 3.85
6311 8907 7.290118 TCGAATAAGGCGTTTACTGTTTAAAC 58.710 34.615 11.54 11.54 34.91 2.01
6322 8918 4.263435 TGGGTAAATCGAATAAGGCGTTT 58.737 39.130 0.00 0.00 0.00 3.60
6323 8919 3.876341 TGGGTAAATCGAATAAGGCGTT 58.124 40.909 0.00 0.00 0.00 4.84
6324 8920 3.547054 TGGGTAAATCGAATAAGGCGT 57.453 42.857 0.00 0.00 0.00 5.68
6325 8921 4.062293 TGATGGGTAAATCGAATAAGGCG 58.938 43.478 0.00 0.00 0.00 5.52
6326 8922 4.819630 TGTGATGGGTAAATCGAATAAGGC 59.180 41.667 0.00 0.00 0.00 4.35
6327 8923 7.228507 TCAATGTGATGGGTAAATCGAATAAGG 59.771 37.037 0.00 0.00 0.00 2.69
6328 8924 8.153479 TCAATGTGATGGGTAAATCGAATAAG 57.847 34.615 0.00 0.00 0.00 1.73
6329 8925 8.690203 ATCAATGTGATGGGTAAATCGAATAA 57.310 30.769 0.00 0.00 35.43 1.40
6330 8926 7.936301 TGATCAATGTGATGGGTAAATCGAATA 59.064 33.333 0.00 0.00 37.20 1.75
6331 8927 6.772233 TGATCAATGTGATGGGTAAATCGAAT 59.228 34.615 0.00 0.00 37.20 3.34
6333 8929 5.679601 TGATCAATGTGATGGGTAAATCGA 58.320 37.500 0.00 0.00 37.20 3.59
6335 8931 5.278660 GCCTGATCAATGTGATGGGTAAATC 60.279 44.000 0.00 0.00 37.20 2.17
6338 8956 3.202818 AGCCTGATCAATGTGATGGGTAA 59.797 43.478 0.00 0.00 37.20 2.85
6350 8968 4.456911 GTCTTGTTGAATCAGCCTGATCAA 59.543 41.667 7.84 10.83 35.76 2.57
6380 9001 5.888161 ACCGATGATCCTAAAAGCTGAAAAT 59.112 36.000 0.00 0.00 0.00 1.82
6543 9164 2.435059 GTGGCAAGGCTCGTCCTC 60.435 66.667 0.00 0.00 46.94 3.71
6546 9167 2.435059 GAGGTGGCAAGGCTCGTC 60.435 66.667 0.00 3.34 0.00 4.20
6582 9203 1.006805 CATCGGGCTGGAGATCGAC 60.007 63.158 0.00 0.00 34.40 4.20
6621 9242 2.254350 CAGACGACGAACTGCCGA 59.746 61.111 0.00 0.00 0.00 5.54
6630 9251 4.753877 TTCGCCGAGCAGACGACG 62.754 66.667 0.00 0.00 40.10 5.12
6642 9263 4.722700 TGCTGGCCCTTCTTCGCC 62.723 66.667 0.00 0.00 45.92 5.54
6681 9302 1.588403 CTCGACGCTGGAGAGCATG 60.588 63.158 0.00 0.00 46.62 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.