Multiple sequence alignment - TraesCS6B01G347800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G347800 chr6B 100.000 3997 0 0 1 3997 612746302 612742306 0.000000e+00 7382.0
1 TraesCS6B01G347800 chr6B 90.323 1891 125 28 1011 2882 612271578 612269727 0.000000e+00 2425.0
2 TraesCS6B01G347800 chr6B 92.081 985 76 1 1741 2723 633731316 633732300 0.000000e+00 1386.0
3 TraesCS6B01G347800 chr6B 92.778 540 36 2 1148 1684 633730671 633731210 0.000000e+00 778.0
4 TraesCS6B01G347800 chr6B 83.268 257 17 13 683 927 633730296 633730538 3.130000e-51 213.0
5 TraesCS6B01G347800 chr6B 78.218 202 15 12 669 862 612271918 612271738 7.070000e-18 102.0
6 TraesCS6B01G347800 chr6B 100.000 48 0 0 869 916 612271677 612271630 5.500000e-14 89.8
7 TraesCS6B01G347800 chr6D 90.022 2265 150 38 669 2894 59089559 59087332 0.000000e+00 2861.0
8 TraesCS6B01G347800 chr6D 91.674 1093 78 6 1721 2813 408156475 408155396 0.000000e+00 1502.0
9 TraesCS6B01G347800 chr6D 92.199 987 75 2 1739 2723 420559899 420560885 0.000000e+00 1395.0
10 TraesCS6B01G347800 chr6D 92.097 987 75 2 1739 2723 420568513 420567528 0.000000e+00 1387.0
11 TraesCS6B01G347800 chr6D 91.014 1035 63 23 669 1687 408157570 408156550 0.000000e+00 1369.0
12 TraesCS6B01G347800 chr6D 93.482 537 35 0 1148 1684 420559256 420559792 0.000000e+00 798.0
13 TraesCS6B01G347800 chr6D 92.924 537 37 1 1148 1684 420569161 420568626 0.000000e+00 780.0
14 TraesCS6B01G347800 chr6D 83.852 675 46 16 9 632 59099759 59099097 5.760000e-163 584.0
15 TraesCS6B01G347800 chr6D 88.009 442 26 11 9 437 408178026 408177599 7.710000e-137 497.0
16 TraesCS6B01G347800 chr6D 87.562 201 10 5 431 631 408158125 408157940 6.730000e-53 219.0
17 TraesCS6B01G347800 chr6D 81.364 220 12 11 736 927 420558897 420559115 6.920000e-33 152.0
18 TraesCS6B01G347800 chr6D 84.615 143 7 5 800 927 420569425 420569283 1.170000e-25 128.0
19 TraesCS6B01G347800 chr6A 89.177 2273 160 43 669 2894 553913780 553911547 0.000000e+00 2756.0
20 TraesCS6B01G347800 chr6A 90.904 1759 113 21 1026 2746 553767100 553765351 0.000000e+00 2318.0
21 TraesCS6B01G347800 chr6A 92.108 1001 76 3 1729 2727 563485401 563486400 0.000000e+00 1408.0
22 TraesCS6B01G347800 chr6A 93.407 546 33 2 1141 1684 563484752 563485296 0.000000e+00 806.0
23 TraesCS6B01G347800 chr6A 87.105 411 28 11 153 545 553914843 553914440 3.670000e-120 442.0
24 TraesCS6B01G347800 chr6A 81.183 186 17 12 692 866 553767279 553767101 2.510000e-27 134.0
25 TraesCS6B01G347800 chr5A 88.636 704 70 8 3302 3997 219678491 219679192 0.000000e+00 848.0
26 TraesCS6B01G347800 chr2D 89.033 693 65 7 3310 3996 12123914 12123227 0.000000e+00 848.0
27 TraesCS6B01G347800 chr2D 86.063 696 82 10 3310 3997 247053912 247053224 0.000000e+00 734.0
28 TraesCS6B01G347800 chr2D 81.612 707 113 13 3299 3997 539432580 539433277 1.610000e-158 569.0
29 TraesCS6B01G347800 chr7A 86.280 707 80 8 3299 3997 1091633 1092330 0.000000e+00 752.0
30 TraesCS6B01G347800 chr7A 85.614 709 79 15 3300 3997 1107040 1107736 0.000000e+00 723.0
31 TraesCS6B01G347800 chr7D 85.613 702 90 8 3299 3997 33694049 33693356 0.000000e+00 726.0
32 TraesCS6B01G347800 chr2A 85.632 696 88 9 3310 3997 297243182 297242491 0.000000e+00 721.0
33 TraesCS6B01G347800 chr1D 81.702 705 111 14 3301 3997 45263309 45264003 4.480000e-159 571.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G347800 chr6B 612742306 612746302 3996 True 7382.000000 7382 100.000000 1 3997 1 chr6B.!!$R1 3996
1 TraesCS6B01G347800 chr6B 612269727 612271918 2191 True 872.266667 2425 89.513667 669 2882 3 chr6B.!!$R2 2213
2 TraesCS6B01G347800 chr6B 633730296 633732300 2004 False 792.333333 1386 89.375667 683 2723 3 chr6B.!!$F1 2040
3 TraesCS6B01G347800 chr6D 59087332 59089559 2227 True 2861.000000 2861 90.022000 669 2894 1 chr6D.!!$R1 2225
4 TraesCS6B01G347800 chr6D 408155396 408158125 2729 True 1030.000000 1502 90.083333 431 2813 3 chr6D.!!$R4 2382
5 TraesCS6B01G347800 chr6D 420558897 420560885 1988 False 781.666667 1395 89.015000 736 2723 3 chr6D.!!$F1 1987
6 TraesCS6B01G347800 chr6D 420567528 420569425 1897 True 765.000000 1387 89.878667 800 2723 3 chr6D.!!$R5 1923
7 TraesCS6B01G347800 chr6D 59099097 59099759 662 True 584.000000 584 83.852000 9 632 1 chr6D.!!$R2 623
8 TraesCS6B01G347800 chr6A 553911547 553914843 3296 True 1599.000000 2756 88.141000 153 2894 2 chr6A.!!$R2 2741
9 TraesCS6B01G347800 chr6A 553765351 553767279 1928 True 1226.000000 2318 86.043500 692 2746 2 chr6A.!!$R1 2054
10 TraesCS6B01G347800 chr6A 563484752 563486400 1648 False 1107.000000 1408 92.757500 1141 2727 2 chr6A.!!$F1 1586
11 TraesCS6B01G347800 chr5A 219678491 219679192 701 False 848.000000 848 88.636000 3302 3997 1 chr5A.!!$F1 695
12 TraesCS6B01G347800 chr2D 12123227 12123914 687 True 848.000000 848 89.033000 3310 3996 1 chr2D.!!$R1 686
13 TraesCS6B01G347800 chr2D 247053224 247053912 688 True 734.000000 734 86.063000 3310 3997 1 chr2D.!!$R2 687
14 TraesCS6B01G347800 chr2D 539432580 539433277 697 False 569.000000 569 81.612000 3299 3997 1 chr2D.!!$F1 698
15 TraesCS6B01G347800 chr7A 1091633 1092330 697 False 752.000000 752 86.280000 3299 3997 1 chr7A.!!$F1 698
16 TraesCS6B01G347800 chr7A 1107040 1107736 696 False 723.000000 723 85.614000 3300 3997 1 chr7A.!!$F2 697
17 TraesCS6B01G347800 chr7D 33693356 33694049 693 True 726.000000 726 85.613000 3299 3997 1 chr7D.!!$R1 698
18 TraesCS6B01G347800 chr2A 297242491 297243182 691 True 721.000000 721 85.632000 3310 3997 1 chr2A.!!$R1 687
19 TraesCS6B01G347800 chr1D 45263309 45264003 694 False 571.000000 571 81.702000 3301 3997 1 chr1D.!!$F1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 1643 0.390340 TGGCGATTCTCACTGTCAGC 60.390 55.0 0.0 0.0 0.00 4.26 F
1081 1841 0.392327 GTTCAGCCAGGAGGAAGAGC 60.392 60.0 0.0 0.0 36.89 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2600 3449 0.323451 TCCACTCCTGCGCTCTCTTA 60.323 55.0 9.73 0.0 0.0 2.10 R
3000 3850 0.327591 TGCATCTGTACATGGTGGCA 59.672 50.0 0.00 0.0 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.873910 TCTAGCTGCGCCTTAATTTCTT 58.126 40.909 4.18 0.00 0.00 2.52
76 77 3.093057 GGAGGTGTGTAGTCAGATCACT 58.907 50.000 0.00 0.00 33.82 3.41
87 88 2.360844 TCAGATCACTGAGAGACGGAC 58.639 52.381 0.00 0.00 46.55 4.79
134 135 2.415010 CCAGCTCGATCGGGACAG 59.585 66.667 21.68 8.29 0.00 3.51
151 171 1.561076 ACAGCATCCAAGCAGGTGATA 59.439 47.619 0.00 0.00 39.02 2.15
201 226 1.135373 CAGAAAATGCTGGCAGCTCTG 60.135 52.381 36.50 32.79 42.97 3.35
234 268 3.991773 AGTTATTTCTTGCGCGTTCTGTA 59.008 39.130 8.43 0.00 0.00 2.74
319 371 6.293004 AGATCTAAACAGAAGCAGCTACTT 57.707 37.500 0.00 0.00 0.00 2.24
325 377 5.667539 AACAGAAGCAGCTACTTGATAGA 57.332 39.130 3.26 0.00 31.83 1.98
329 381 6.015519 ACAGAAGCAGCTACTTGATAGATAGG 60.016 42.308 3.26 0.00 31.83 2.57
330 382 6.015519 CAGAAGCAGCTACTTGATAGATAGGT 60.016 42.308 3.26 0.00 31.83 3.08
341 393 4.523083 TGATAGATAGGTTTGCCCAACAC 58.477 43.478 0.00 0.00 37.07 3.32
343 395 0.808755 GATAGGTTTGCCCAACACGG 59.191 55.000 0.00 0.00 37.07 4.94
356 408 2.811317 CACGGCGAGACCTCAAGC 60.811 66.667 16.62 0.00 35.61 4.01
363 415 1.646189 CGAGACCTCAAGCTTTAGCC 58.354 55.000 0.00 0.00 43.38 3.93
364 416 1.740718 CGAGACCTCAAGCTTTAGCCC 60.741 57.143 0.00 0.00 43.38 5.19
365 417 1.557371 GAGACCTCAAGCTTTAGCCCT 59.443 52.381 0.00 0.00 43.38 5.19
366 418 1.280421 AGACCTCAAGCTTTAGCCCTG 59.720 52.381 0.00 0.00 43.38 4.45
388 440 4.961511 TCAGCTCAAACGCCGCGT 62.962 61.111 13.85 13.85 43.97 6.01
420 472 1.079127 CCTTGGCCACGTACAGGAG 60.079 63.158 14.38 2.13 0.00 3.69
443 495 4.024218 GGATCATCAAATGAGCTACAGTGC 60.024 45.833 5.31 0.00 44.66 4.40
450 507 1.227002 GAGCTACAGTGCCCTACGC 60.227 63.158 0.00 0.00 38.31 4.42
487 544 2.184167 CCTTTGCCCAACACGACGT 61.184 57.895 0.00 0.00 0.00 4.34
544 605 0.827925 ACTTCACGGAGCTGAGTCCA 60.828 55.000 0.00 0.00 36.23 4.02
562 624 6.365970 AGTCCACAACTCTACATCTGATTT 57.634 37.500 0.00 0.00 30.02 2.17
578 640 0.391130 ATTTAGGCGACGCTTGCTCA 60.391 50.000 20.77 0.00 0.00 4.26
579 641 1.014044 TTTAGGCGACGCTTGCTCAG 61.014 55.000 20.77 0.00 0.00 3.35
580 642 2.154798 TTAGGCGACGCTTGCTCAGT 62.155 55.000 20.77 0.00 0.00 3.41
581 643 2.154798 TAGGCGACGCTTGCTCAGTT 62.155 55.000 20.77 0.00 0.00 3.16
582 644 2.171940 GCGACGCTTGCTCAGTTG 59.828 61.111 13.73 0.00 0.00 3.16
583 645 2.171940 CGACGCTTGCTCAGTTGC 59.828 61.111 0.00 0.00 0.00 4.17
584 646 2.313172 CGACGCTTGCTCAGTTGCT 61.313 57.895 0.00 0.00 0.00 3.91
585 647 1.495069 GACGCTTGCTCAGTTGCTC 59.505 57.895 0.00 0.00 0.00 4.26
632 877 1.778334 TTGACCTGAACGATCACACG 58.222 50.000 0.00 0.00 39.31 4.49
633 878 0.666274 TGACCTGAACGATCACACGC 60.666 55.000 0.00 0.00 36.70 5.34
634 879 1.352156 GACCTGAACGATCACACGCC 61.352 60.000 0.00 0.00 36.70 5.68
636 881 2.431771 TGAACGATCACACGCCGG 60.432 61.111 0.00 0.00 36.70 6.13
637 882 3.849953 GAACGATCACACGCCGGC 61.850 66.667 19.07 19.07 36.70 6.13
653 1066 3.827634 GCGGGAAAGGCCTATGTG 58.172 61.111 5.16 0.00 36.66 3.21
655 1068 0.393808 GCGGGAAAGGCCTATGTGAA 60.394 55.000 5.16 0.00 36.66 3.18
656 1069 1.379527 CGGGAAAGGCCTATGTGAAC 58.620 55.000 5.16 0.00 36.66 3.18
658 1071 1.065709 GGGAAAGGCCTATGTGAACGA 60.066 52.381 5.16 0.00 36.66 3.85
663 1076 3.627395 AGGCCTATGTGAACGATCAAA 57.373 42.857 1.29 0.00 37.30 2.69
664 1077 3.270877 AGGCCTATGTGAACGATCAAAC 58.729 45.455 1.29 0.00 37.30 2.93
665 1078 2.030457 GGCCTATGTGAACGATCAAACG 59.970 50.000 0.00 0.00 37.30 3.60
667 1080 2.607635 CCTATGTGAACGATCAAACGGG 59.392 50.000 0.00 0.00 37.30 5.28
916 1642 2.306341 ATGGCGATTCTCACTGTCAG 57.694 50.000 0.00 0.00 0.00 3.51
917 1643 0.390340 TGGCGATTCTCACTGTCAGC 60.390 55.000 0.00 0.00 0.00 4.26
918 1644 1.416813 GGCGATTCTCACTGTCAGCG 61.417 60.000 0.00 0.00 0.00 5.18
983 1724 2.157834 CGTGCCTATAAATACGGCCA 57.842 50.000 2.24 0.00 43.12 5.36
1014 1767 4.082408 CGAGGTAGCCAATTCATACCGATA 60.082 45.833 5.16 0.00 43.12 2.92
1079 1839 1.203237 AGAGTTCAGCCAGGAGGAAGA 60.203 52.381 0.00 0.00 36.89 2.87
1080 1840 1.206849 GAGTTCAGCCAGGAGGAAGAG 59.793 57.143 0.00 0.00 36.89 2.85
1081 1841 0.392327 GTTCAGCCAGGAGGAAGAGC 60.392 60.000 0.00 0.00 36.89 4.09
1082 1842 0.837691 TTCAGCCAGGAGGAAGAGCA 60.838 55.000 0.00 0.00 36.89 4.26
1130 1890 4.373116 TCGAAGCACACGGAGGGC 62.373 66.667 0.00 0.00 0.00 5.19
1133 1893 2.594592 AAGCACACGGAGGGCAAC 60.595 61.111 7.13 0.00 0.00 4.17
1163 1924 1.612146 TGCGGAGGAGATGGGTTCA 60.612 57.895 0.00 0.00 0.00 3.18
1586 2358 2.203771 CGAGCTCGGCCTTCCCTAT 61.204 63.158 28.40 0.00 35.37 2.57
1664 2436 4.457496 ATCAGCCGTGGCCTCGTG 62.457 66.667 24.30 17.16 43.17 4.35
1678 2450 2.679930 GCCTCGTGCCACTTAAAGGTAT 60.680 50.000 0.00 0.00 0.00 2.73
1688 2476 4.092383 CCACTTAAAGGTATGTACGCACAC 59.908 45.833 0.00 0.00 37.54 3.82
1730 2573 1.153188 TCGATGCGGCCATTGTCAT 60.153 52.632 2.24 0.00 34.90 3.06
1735 2578 3.113745 CGGCCATTGTCATCTGCC 58.886 61.111 2.24 0.00 38.74 4.85
1737 2580 1.750399 GGCCATTGTCATCTGCCGT 60.750 57.895 0.00 0.00 31.55 5.68
2027 2876 1.299976 CCTGCCCAAGGTCTACACC 59.700 63.158 0.00 0.00 41.74 4.16
2036 2885 2.682494 GTCTACACCCTCGGCCCA 60.682 66.667 0.00 0.00 0.00 5.36
2090 2939 2.436646 CGCTCCGCCATCAACCTT 60.437 61.111 0.00 0.00 0.00 3.50
2375 3224 4.643387 GTGCTGAACCACCCCGCT 62.643 66.667 0.00 0.00 0.00 5.52
2378 3227 2.113139 CTGAACCACCCCGCTGTT 59.887 61.111 0.00 0.00 0.00 3.16
2537 3386 1.154093 GATCGACAGCAACGTCCGA 60.154 57.895 0.00 0.00 31.91 4.55
2600 3449 1.836802 GAGAAGGGGAAGAGCATGAGT 59.163 52.381 0.00 0.00 0.00 3.41
2706 3555 3.537206 GACGTGCTCCTGCCCAAGT 62.537 63.158 0.00 0.00 38.71 3.16
2712 3561 0.466124 GCTCCTGCCCAAGTACTAGG 59.534 60.000 0.00 1.08 0.00 3.02
2723 3572 5.071370 CCCAAGTACTAGGTCTACATCGAT 58.929 45.833 0.00 0.00 0.00 3.59
2724 3573 5.181622 CCCAAGTACTAGGTCTACATCGATC 59.818 48.000 0.00 0.00 0.00 3.69
2725 3574 5.107026 CCAAGTACTAGGTCTACATCGATCG 60.107 48.000 9.36 9.36 0.00 3.69
2726 3575 5.465532 AGTACTAGGTCTACATCGATCGA 57.534 43.478 21.86 21.86 0.00 3.59
2734 3583 4.145276 GTCTACATCGATCGATCTTCACG 58.855 47.826 27.20 17.03 31.62 4.35
2747 3596 7.092137 TCGATCTTCACGGTAATTAGAGAAA 57.908 36.000 0.00 0.00 0.00 2.52
2757 3606 7.427606 CACGGTAATTAGAGAAACACTACTACG 59.572 40.741 0.00 0.00 0.00 3.51
2758 3607 7.119846 ACGGTAATTAGAGAAACACTACTACGT 59.880 37.037 0.00 0.00 0.00 3.57
2759 3608 8.604035 CGGTAATTAGAGAAACACTACTACGTA 58.396 37.037 0.00 0.00 0.00 3.57
2760 3609 9.709600 GGTAATTAGAGAAACACTACTACGTAC 57.290 37.037 0.00 0.00 0.00 3.67
2761 3610 9.414834 GTAATTAGAGAAACACTACTACGTACG 57.585 37.037 15.01 15.01 0.00 3.67
2762 3611 4.935885 AGAGAAACACTACTACGTACGG 57.064 45.455 21.06 5.00 0.00 4.02
2763 3612 4.569943 AGAGAAACACTACTACGTACGGA 58.430 43.478 21.06 10.81 0.00 4.69
2764 3613 4.629200 AGAGAAACACTACTACGTACGGAG 59.371 45.833 25.90 25.90 0.00 4.63
2766 3615 5.479306 AGAAACACTACTACGTACGGAGTA 58.521 41.667 32.61 32.61 45.11 2.59
2796 3645 9.319223 CTTATTTGCTTCTTAAGAAAGTTCGTC 57.681 33.333 18.25 4.71 34.13 4.20
2850 3700 7.007995 GGAGTAACAAAAATGCTAAACATACGC 59.992 37.037 0.00 0.00 38.34 4.42
2860 3710 0.109781 AAACATACGCGGCAGCTTTG 60.110 50.000 12.47 4.25 42.32 2.77
2879 3729 1.749063 TGTACGGAGTGCTGATGTAGG 59.251 52.381 0.00 0.00 45.46 3.18
2889 3739 2.158769 TGCTGATGTAGGCCATGGTAAG 60.159 50.000 14.67 0.00 32.56 2.34
2894 3744 5.329399 TGATGTAGGCCATGGTAAGTTTTT 58.671 37.500 14.67 0.00 32.56 1.94
2895 3745 5.417580 TGATGTAGGCCATGGTAAGTTTTTC 59.582 40.000 14.67 2.55 32.56 2.29
2896 3746 4.730966 TGTAGGCCATGGTAAGTTTTTCA 58.269 39.130 14.67 0.00 0.00 2.69
2897 3747 5.329399 TGTAGGCCATGGTAAGTTTTTCAT 58.671 37.500 14.67 0.00 0.00 2.57
2898 3748 5.777732 TGTAGGCCATGGTAAGTTTTTCATT 59.222 36.000 14.67 0.00 0.00 2.57
2899 3749 5.823861 AGGCCATGGTAAGTTTTTCATTT 57.176 34.783 14.67 0.00 0.00 2.32
2900 3750 6.186420 AGGCCATGGTAAGTTTTTCATTTT 57.814 33.333 14.67 0.00 0.00 1.82
2901 3751 6.600388 AGGCCATGGTAAGTTTTTCATTTTT 58.400 32.000 14.67 0.00 0.00 1.94
2921 3771 6.631971 TTTTTGTGCTCTACATCAACATGA 57.368 33.333 0.00 0.00 39.48 3.07
2922 3772 6.822667 TTTTGTGCTCTACATCAACATGAT 57.177 33.333 0.00 0.00 39.48 2.45
2937 3787 7.333528 TCAACATGATGGCTACTTTTAATCC 57.666 36.000 0.00 0.00 0.00 3.01
2938 3788 6.889177 TCAACATGATGGCTACTTTTAATCCA 59.111 34.615 0.00 0.00 0.00 3.41
2939 3789 6.699575 ACATGATGGCTACTTTTAATCCAC 57.300 37.500 0.00 0.00 0.00 4.02
2940 3790 6.186957 ACATGATGGCTACTTTTAATCCACA 58.813 36.000 0.00 0.00 0.00 4.17
2941 3791 6.835488 ACATGATGGCTACTTTTAATCCACAT 59.165 34.615 0.00 0.00 0.00 3.21
2942 3792 7.342799 ACATGATGGCTACTTTTAATCCACATT 59.657 33.333 0.00 0.00 0.00 2.71
2943 3793 7.333528 TGATGGCTACTTTTAATCCACATTC 57.666 36.000 0.00 0.00 0.00 2.67
2944 3794 7.118723 TGATGGCTACTTTTAATCCACATTCT 58.881 34.615 0.00 0.00 0.00 2.40
2945 3795 7.615365 TGATGGCTACTTTTAATCCACATTCTT 59.385 33.333 0.00 0.00 0.00 2.52
2946 3796 7.775053 TGGCTACTTTTAATCCACATTCTTT 57.225 32.000 0.00 0.00 0.00 2.52
2947 3797 7.601856 TGGCTACTTTTAATCCACATTCTTTG 58.398 34.615 0.00 0.00 0.00 2.77
2948 3798 7.232534 TGGCTACTTTTAATCCACATTCTTTGT 59.767 33.333 0.00 0.00 39.91 2.83
2964 3814 9.897744 ACATTCTTTGTGTTTTCATGTATGTAG 57.102 29.630 0.00 0.00 37.11 2.74
2965 3815 9.897744 CATTCTTTGTGTTTTCATGTATGTAGT 57.102 29.630 0.00 0.00 0.00 2.73
2968 3818 9.990360 TCTTTGTGTTTTCATGTATGTAGTAGA 57.010 29.630 0.00 0.00 0.00 2.59
3003 3853 9.435688 AGTAAATTTAATCCACATTTTTCTGCC 57.564 29.630 0.00 0.00 0.00 4.85
3004 3854 9.213799 GTAAATTTAATCCACATTTTTCTGCCA 57.786 29.630 0.00 0.00 0.00 4.92
3005 3855 7.671495 AATTTAATCCACATTTTTCTGCCAC 57.329 32.000 0.00 0.00 0.00 5.01
3006 3856 3.683365 AATCCACATTTTTCTGCCACC 57.317 42.857 0.00 0.00 0.00 4.61
3007 3857 2.079170 TCCACATTTTTCTGCCACCA 57.921 45.000 0.00 0.00 0.00 4.17
3008 3858 2.607499 TCCACATTTTTCTGCCACCAT 58.393 42.857 0.00 0.00 0.00 3.55
3009 3859 2.299582 TCCACATTTTTCTGCCACCATG 59.700 45.455 0.00 0.00 0.00 3.66
3010 3860 2.037511 CCACATTTTTCTGCCACCATGT 59.962 45.455 0.00 0.00 0.00 3.21
3011 3861 3.257873 CCACATTTTTCTGCCACCATGTA 59.742 43.478 0.00 0.00 0.00 2.29
3012 3862 4.236935 CACATTTTTCTGCCACCATGTAC 58.763 43.478 0.00 0.00 0.00 2.90
3013 3863 3.894427 ACATTTTTCTGCCACCATGTACA 59.106 39.130 0.00 0.00 0.00 2.90
3014 3864 4.022068 ACATTTTTCTGCCACCATGTACAG 60.022 41.667 0.33 0.00 0.00 2.74
3015 3865 3.500448 TTTTCTGCCACCATGTACAGA 57.500 42.857 0.33 0.00 37.38 3.41
3016 3866 3.719268 TTTCTGCCACCATGTACAGAT 57.281 42.857 0.33 0.00 38.84 2.90
3017 3867 2.696989 TCTGCCACCATGTACAGATG 57.303 50.000 0.33 0.00 34.35 2.90
3018 3868 1.019673 CTGCCACCATGTACAGATGC 58.980 55.000 0.33 0.34 31.67 3.91
3019 3869 0.327591 TGCCACCATGTACAGATGCA 59.672 50.000 0.33 3.09 0.00 3.96
3020 3870 1.271817 TGCCACCATGTACAGATGCAA 60.272 47.619 0.33 0.00 0.00 4.08
3021 3871 1.818060 GCCACCATGTACAGATGCAAA 59.182 47.619 0.33 0.00 0.00 3.68
3022 3872 2.428171 GCCACCATGTACAGATGCAAAT 59.572 45.455 0.33 0.00 0.00 2.32
3023 3873 3.119029 GCCACCATGTACAGATGCAAATT 60.119 43.478 0.33 0.00 0.00 1.82
3024 3874 4.675510 CCACCATGTACAGATGCAAATTC 58.324 43.478 0.33 0.00 0.00 2.17
3025 3875 4.400251 CCACCATGTACAGATGCAAATTCT 59.600 41.667 0.33 0.00 0.00 2.40
3026 3876 5.449588 CCACCATGTACAGATGCAAATTCTC 60.450 44.000 0.33 0.00 0.00 2.87
3027 3877 5.124297 CACCATGTACAGATGCAAATTCTCA 59.876 40.000 0.33 0.00 0.00 3.27
3028 3878 5.889853 ACCATGTACAGATGCAAATTCTCAT 59.110 36.000 0.33 0.00 0.00 2.90
3029 3879 6.183360 ACCATGTACAGATGCAAATTCTCATG 60.183 38.462 0.33 2.97 0.00 3.07
3030 3880 5.239359 TGTACAGATGCAAATTCTCATGC 57.761 39.130 0.00 0.00 42.86 4.06
3031 3881 3.795623 ACAGATGCAAATTCTCATGCC 57.204 42.857 0.00 0.00 41.87 4.40
3032 3882 3.362706 ACAGATGCAAATTCTCATGCCT 58.637 40.909 0.00 0.00 41.87 4.75
3033 3883 3.767673 ACAGATGCAAATTCTCATGCCTT 59.232 39.130 0.00 0.00 41.87 4.35
3034 3884 4.222145 ACAGATGCAAATTCTCATGCCTTT 59.778 37.500 0.00 0.00 41.87 3.11
3035 3885 5.175859 CAGATGCAAATTCTCATGCCTTTT 58.824 37.500 0.00 0.00 41.87 2.27
3036 3886 5.642063 CAGATGCAAATTCTCATGCCTTTTT 59.358 36.000 0.00 0.00 41.87 1.94
3057 3907 3.737032 TTTGGGTTCATCGGAAAAACC 57.263 42.857 13.62 13.62 41.41 3.27
3058 3908 2.668144 TGGGTTCATCGGAAAAACCT 57.332 45.000 18.65 0.00 41.76 3.50
3059 3909 2.952116 TGGGTTCATCGGAAAAACCTT 58.048 42.857 18.65 0.00 41.76 3.50
3060 3910 3.301274 TGGGTTCATCGGAAAAACCTTT 58.699 40.909 18.65 0.00 41.76 3.11
3061 3911 3.068873 TGGGTTCATCGGAAAAACCTTTG 59.931 43.478 18.65 0.00 41.76 2.77
3062 3912 3.319689 GGGTTCATCGGAAAAACCTTTGA 59.680 43.478 18.65 0.00 41.76 2.69
3063 3913 4.202172 GGGTTCATCGGAAAAACCTTTGAA 60.202 41.667 18.65 4.23 41.76 2.69
3064 3914 5.510690 GGGTTCATCGGAAAAACCTTTGAAT 60.511 40.000 18.65 0.00 41.76 2.57
3065 3915 6.294843 GGGTTCATCGGAAAAACCTTTGAATA 60.295 38.462 18.65 0.00 41.76 1.75
3066 3916 7.149307 GGTTCATCGGAAAAACCTTTGAATAA 58.851 34.615 14.36 0.00 39.48 1.40
3067 3917 7.817478 GGTTCATCGGAAAAACCTTTGAATAAT 59.183 33.333 14.36 0.00 39.48 1.28
3068 3918 8.647226 GTTCATCGGAAAAACCTTTGAATAATG 58.353 33.333 0.00 0.00 38.48 1.90
3069 3919 7.319646 TCATCGGAAAAACCTTTGAATAATGG 58.680 34.615 0.00 0.00 37.19 3.16
3070 3920 5.474825 TCGGAAAAACCTTTGAATAATGGC 58.525 37.500 0.00 0.00 35.15 4.40
3071 3921 4.629634 CGGAAAAACCTTTGAATAATGGCC 59.370 41.667 0.00 0.00 35.15 5.36
3072 3922 5.568624 CGGAAAAACCTTTGAATAATGGCCT 60.569 40.000 3.32 0.00 35.15 5.19
3073 3923 6.237901 GGAAAAACCTTTGAATAATGGCCTT 58.762 36.000 3.32 0.00 35.15 4.35
3074 3924 6.714810 GGAAAAACCTTTGAATAATGGCCTTT 59.285 34.615 3.32 6.72 35.15 3.11
3075 3925 7.230510 GGAAAAACCTTTGAATAATGGCCTTTT 59.769 33.333 9.46 2.91 35.02 2.27
3076 3926 8.532186 AAAAACCTTTGAATAATGGCCTTTTT 57.468 26.923 9.46 3.53 35.15 1.94
3077 3927 9.634021 AAAAACCTTTGAATAATGGCCTTTTTA 57.366 25.926 9.46 2.64 33.00 1.52
3078 3928 9.634021 AAAACCTTTGAATAATGGCCTTTTTAA 57.366 25.926 9.46 0.00 35.15 1.52
3079 3929 9.806448 AAACCTTTGAATAATGGCCTTTTTAAT 57.194 25.926 9.46 0.00 35.15 1.40
3080 3930 8.791327 ACCTTTGAATAATGGCCTTTTTAATG 57.209 30.769 9.46 0.00 35.15 1.90
3081 3931 8.382405 ACCTTTGAATAATGGCCTTTTTAATGT 58.618 29.630 9.46 0.00 35.15 2.71
3082 3932 8.667463 CCTTTGAATAATGGCCTTTTTAATGTG 58.333 33.333 9.46 0.00 0.00 3.21
3083 3933 8.558973 TTTGAATAATGGCCTTTTTAATGTGG 57.441 30.769 9.46 0.00 0.00 4.17
3084 3934 6.648192 TGAATAATGGCCTTTTTAATGTGGG 58.352 36.000 9.46 0.00 0.00 4.61
3085 3935 6.441924 TGAATAATGGCCTTTTTAATGTGGGA 59.558 34.615 9.46 0.00 0.00 4.37
3086 3936 4.824479 AATGGCCTTTTTAATGTGGGAG 57.176 40.909 3.32 0.00 0.00 4.30
3087 3937 3.534357 TGGCCTTTTTAATGTGGGAGA 57.466 42.857 3.32 0.00 0.00 3.71
3088 3938 3.850752 TGGCCTTTTTAATGTGGGAGAA 58.149 40.909 3.32 0.00 0.00 2.87
3089 3939 3.576550 TGGCCTTTTTAATGTGGGAGAAC 59.423 43.478 3.32 0.00 0.00 3.01
3090 3940 3.576550 GGCCTTTTTAATGTGGGAGAACA 59.423 43.478 0.00 0.00 0.00 3.18
3091 3941 4.039852 GGCCTTTTTAATGTGGGAGAACAA 59.960 41.667 0.00 0.00 32.81 2.83
3092 3942 5.230182 GCCTTTTTAATGTGGGAGAACAAG 58.770 41.667 0.00 0.00 32.81 3.16
3093 3943 5.221441 GCCTTTTTAATGTGGGAGAACAAGT 60.221 40.000 0.00 0.00 32.81 3.16
3094 3944 6.015772 GCCTTTTTAATGTGGGAGAACAAGTA 60.016 38.462 0.00 0.00 32.81 2.24
3095 3945 7.309805 GCCTTTTTAATGTGGGAGAACAAGTAT 60.310 37.037 0.00 0.00 32.81 2.12
3096 3946 8.585018 CCTTTTTAATGTGGGAGAACAAGTATT 58.415 33.333 0.00 0.00 32.81 1.89
3097 3947 9.626045 CTTTTTAATGTGGGAGAACAAGTATTC 57.374 33.333 0.00 0.00 32.81 1.75
3098 3948 8.934023 TTTTAATGTGGGAGAACAAGTATTCT 57.066 30.769 0.00 0.00 41.74 2.40
3099 3949 8.934023 TTTAATGTGGGAGAACAAGTATTCTT 57.066 30.769 0.00 0.00 39.08 2.52
3102 3952 8.567285 AATGTGGGAGAACAAGTATTCTTAAG 57.433 34.615 0.00 0.00 39.08 1.85
3103 3953 7.074653 TGTGGGAGAACAAGTATTCTTAAGT 57.925 36.000 1.63 0.00 39.08 2.24
3104 3954 7.514721 TGTGGGAGAACAAGTATTCTTAAGTT 58.485 34.615 1.63 0.00 39.08 2.66
3105 3955 7.996644 TGTGGGAGAACAAGTATTCTTAAGTTT 59.003 33.333 1.63 0.00 39.08 2.66
3106 3956 8.290325 GTGGGAGAACAAGTATTCTTAAGTTTG 58.710 37.037 1.63 4.17 39.08 2.93
3107 3957 7.040686 TGGGAGAACAAGTATTCTTAAGTTTGC 60.041 37.037 1.63 0.00 39.08 3.68
3108 3958 7.306213 GGAGAACAAGTATTCTTAAGTTTGCC 58.694 38.462 1.63 0.00 39.08 4.52
3109 3959 7.040686 GGAGAACAAGTATTCTTAAGTTTGCCA 60.041 37.037 1.63 0.00 39.08 4.92
3110 3960 8.409358 AGAACAAGTATTCTTAAGTTTGCCAT 57.591 30.769 1.63 0.00 35.29 4.40
3111 3961 8.299570 AGAACAAGTATTCTTAAGTTTGCCATG 58.700 33.333 1.63 0.00 35.29 3.66
3112 3962 7.524717 ACAAGTATTCTTAAGTTTGCCATGT 57.475 32.000 1.63 0.00 32.07 3.21
3113 3963 7.951591 ACAAGTATTCTTAAGTTTGCCATGTT 58.048 30.769 1.63 0.00 32.07 2.71
3114 3964 9.073475 ACAAGTATTCTTAAGTTTGCCATGTTA 57.927 29.630 1.63 0.00 32.07 2.41
3115 3965 9.341899 CAAGTATTCTTAAGTTTGCCATGTTAC 57.658 33.333 1.63 0.00 32.07 2.50
3116 3966 7.748847 AGTATTCTTAAGTTTGCCATGTTACG 58.251 34.615 1.63 0.00 0.00 3.18
3117 3967 6.811253 ATTCTTAAGTTTGCCATGTTACGA 57.189 33.333 1.63 0.00 0.00 3.43
3118 3968 6.811253 TTCTTAAGTTTGCCATGTTACGAT 57.189 33.333 1.63 0.00 0.00 3.73
3119 3969 6.811253 TCTTAAGTTTGCCATGTTACGATT 57.189 33.333 1.63 0.00 0.00 3.34
3120 3970 7.209471 TCTTAAGTTTGCCATGTTACGATTT 57.791 32.000 1.63 0.00 0.00 2.17
3121 3971 7.653647 TCTTAAGTTTGCCATGTTACGATTTT 58.346 30.769 1.63 0.00 0.00 1.82
3122 3972 7.806014 TCTTAAGTTTGCCATGTTACGATTTTC 59.194 33.333 1.63 0.00 0.00 2.29
3123 3973 5.446143 AGTTTGCCATGTTACGATTTTCA 57.554 34.783 0.00 0.00 0.00 2.69
3124 3974 6.024552 AGTTTGCCATGTTACGATTTTCAT 57.975 33.333 0.00 0.00 0.00 2.57
3125 3975 6.454795 AGTTTGCCATGTTACGATTTTCATT 58.545 32.000 0.00 0.00 0.00 2.57
3126 3976 6.928492 AGTTTGCCATGTTACGATTTTCATTT 59.072 30.769 0.00 0.00 0.00 2.32
3127 3977 7.440856 AGTTTGCCATGTTACGATTTTCATTTT 59.559 29.630 0.00 0.00 0.00 1.82
3128 3978 7.721286 TTGCCATGTTACGATTTTCATTTTT 57.279 28.000 0.00 0.00 0.00 1.94
3187 4037 8.693542 ATCTTTTTGCTATAGTCACATTTTGC 57.306 30.769 0.84 0.00 0.00 3.68
3188 4038 7.656412 TCTTTTTGCTATAGTCACATTTTGCA 58.344 30.769 0.84 0.00 0.00 4.08
3189 4039 8.140628 TCTTTTTGCTATAGTCACATTTTGCAA 58.859 29.630 0.00 0.00 37.39 4.08
3190 4040 8.654230 TTTTTGCTATAGTCACATTTTGCAAA 57.346 26.923 8.05 8.05 44.03 3.68
3191 4041 8.830201 TTTTGCTATAGTCACATTTTGCAAAT 57.170 26.923 13.65 0.00 44.70 2.32
3192 4042 8.830201 TTTGCTATAGTCACATTTTGCAAATT 57.170 26.923 13.65 6.74 41.93 1.82
3193 4043 8.830201 TTGCTATAGTCACATTTTGCAAATTT 57.170 26.923 13.65 0.68 36.45 1.82
3194 4044 9.920133 TTGCTATAGTCACATTTTGCAAATTTA 57.080 25.926 13.65 0.00 36.45 1.40
3222 4072 9.826574 AATTTTTGATCTATGTTTCATGGATGG 57.173 29.630 12.01 0.00 0.00 3.51
3223 4073 8.592529 TTTTTGATCTATGTTTCATGGATGGA 57.407 30.769 12.01 0.57 0.00 3.41
3224 4074 7.572523 TTTGATCTATGTTTCATGGATGGAC 57.427 36.000 12.01 1.48 0.00 4.02
3225 4075 5.299949 TGATCTATGTTTCATGGATGGACG 58.700 41.667 12.01 0.00 0.00 4.79
3226 4076 4.753516 TCTATGTTTCATGGATGGACGT 57.246 40.909 0.00 0.00 0.00 4.34
3227 4077 4.693283 TCTATGTTTCATGGATGGACGTC 58.307 43.478 7.13 7.13 0.00 4.34
3228 4078 3.634397 ATGTTTCATGGATGGACGTCT 57.366 42.857 16.46 0.00 0.00 4.18
3229 4079 2.698803 TGTTTCATGGATGGACGTCTG 58.301 47.619 16.46 4.63 0.00 3.51
3230 4080 2.038426 TGTTTCATGGATGGACGTCTGT 59.962 45.455 16.46 4.08 0.00 3.41
3231 4081 2.672961 TTCATGGATGGACGTCTGTC 57.327 50.000 16.46 13.14 44.72 3.51
3232 4082 0.455815 TCATGGATGGACGTCTGTCG 59.544 55.000 16.46 2.30 46.49 4.35
3233 4083 0.528466 CATGGATGGACGTCTGTCGG 60.528 60.000 16.46 3.94 46.49 4.79
3234 4084 1.676678 ATGGATGGACGTCTGTCGGG 61.677 60.000 16.46 0.00 46.49 5.14
3235 4085 2.494918 GATGGACGTCTGTCGGGG 59.505 66.667 16.46 0.00 46.49 5.73
3236 4086 2.036731 ATGGACGTCTGTCGGGGA 59.963 61.111 16.46 0.00 46.49 4.81
3237 4087 2.280823 GATGGACGTCTGTCGGGGAC 62.281 65.000 16.46 0.00 46.49 4.46
3238 4088 3.756727 GGACGTCTGTCGGGGACC 61.757 72.222 16.46 0.00 46.49 4.46
3253 4103 3.180891 GGGACCCGTTGAGATCTAAAG 57.819 52.381 0.00 0.00 0.00 1.85
3254 4104 2.552031 GGACCCGTTGAGATCTAAAGC 58.448 52.381 0.00 0.00 0.00 3.51
3255 4105 2.093658 GGACCCGTTGAGATCTAAAGCA 60.094 50.000 0.00 0.00 0.00 3.91
3256 4106 2.930682 GACCCGTTGAGATCTAAAGCAC 59.069 50.000 0.00 0.00 0.00 4.40
3257 4107 2.301870 ACCCGTTGAGATCTAAAGCACA 59.698 45.455 0.00 0.00 0.00 4.57
3258 4108 3.244422 ACCCGTTGAGATCTAAAGCACAA 60.244 43.478 0.00 0.00 0.00 3.33
3259 4109 3.125316 CCCGTTGAGATCTAAAGCACAAC 59.875 47.826 11.00 11.00 35.70 3.32
3260 4110 3.125316 CCGTTGAGATCTAAAGCACAACC 59.875 47.826 13.93 1.82 35.65 3.77
3261 4111 3.745975 CGTTGAGATCTAAAGCACAACCA 59.254 43.478 13.93 0.00 35.65 3.67
3262 4112 4.377431 CGTTGAGATCTAAAGCACAACCAC 60.377 45.833 13.93 0.00 35.65 4.16
3263 4113 4.350368 TGAGATCTAAAGCACAACCACA 57.650 40.909 0.00 0.00 0.00 4.17
3264 4114 4.065088 TGAGATCTAAAGCACAACCACAC 58.935 43.478 0.00 0.00 0.00 3.82
3265 4115 3.412386 AGATCTAAAGCACAACCACACC 58.588 45.455 0.00 0.00 0.00 4.16
3266 4116 3.073062 AGATCTAAAGCACAACCACACCT 59.927 43.478 0.00 0.00 0.00 4.00
3267 4117 2.846193 TCTAAAGCACAACCACACCTC 58.154 47.619 0.00 0.00 0.00 3.85
3268 4118 2.438021 TCTAAAGCACAACCACACCTCT 59.562 45.455 0.00 0.00 0.00 3.69
3269 4119 1.680338 AAAGCACAACCACACCTCTC 58.320 50.000 0.00 0.00 0.00 3.20
3270 4120 0.546122 AAGCACAACCACACCTCTCA 59.454 50.000 0.00 0.00 0.00 3.27
3271 4121 0.767375 AGCACAACCACACCTCTCAT 59.233 50.000 0.00 0.00 0.00 2.90
3272 4122 1.160137 GCACAACCACACCTCTCATC 58.840 55.000 0.00 0.00 0.00 2.92
3273 4123 1.271054 GCACAACCACACCTCTCATCT 60.271 52.381 0.00 0.00 0.00 2.90
3274 4124 2.693069 CACAACCACACCTCTCATCTC 58.307 52.381 0.00 0.00 0.00 2.75
3275 4125 2.301296 CACAACCACACCTCTCATCTCT 59.699 50.000 0.00 0.00 0.00 3.10
3276 4126 2.564947 ACAACCACACCTCTCATCTCTC 59.435 50.000 0.00 0.00 0.00 3.20
3277 4127 1.859302 ACCACACCTCTCATCTCTCC 58.141 55.000 0.00 0.00 0.00 3.71
3278 4128 1.077828 ACCACACCTCTCATCTCTCCA 59.922 52.381 0.00 0.00 0.00 3.86
3279 4129 1.480137 CCACACCTCTCATCTCTCCAC 59.520 57.143 0.00 0.00 0.00 4.02
3280 4130 1.480137 CACACCTCTCATCTCTCCACC 59.520 57.143 0.00 0.00 0.00 4.61
3281 4131 1.118838 CACCTCTCATCTCTCCACCC 58.881 60.000 0.00 0.00 0.00 4.61
3282 4132 1.014804 ACCTCTCATCTCTCCACCCT 58.985 55.000 0.00 0.00 0.00 4.34
3283 4133 1.364328 ACCTCTCATCTCTCCACCCTT 59.636 52.381 0.00 0.00 0.00 3.95
3284 4134 2.225753 ACCTCTCATCTCTCCACCCTTT 60.226 50.000 0.00 0.00 0.00 3.11
3285 4135 2.843113 CCTCTCATCTCTCCACCCTTTT 59.157 50.000 0.00 0.00 0.00 2.27
3286 4136 3.265479 CCTCTCATCTCTCCACCCTTTTT 59.735 47.826 0.00 0.00 0.00 1.94
3287 4137 4.512484 CTCTCATCTCTCCACCCTTTTTC 58.488 47.826 0.00 0.00 0.00 2.29
3288 4138 3.055819 TCTCATCTCTCCACCCTTTTTCG 60.056 47.826 0.00 0.00 0.00 3.46
3289 4139 2.903784 TCATCTCTCCACCCTTTTTCGA 59.096 45.455 0.00 0.00 0.00 3.71
3290 4140 3.055819 TCATCTCTCCACCCTTTTTCGAG 60.056 47.826 0.00 0.00 0.00 4.04
3291 4141 1.002087 TCTCTCCACCCTTTTTCGAGC 59.998 52.381 0.00 0.00 0.00 5.03
3292 4142 0.762418 TCTCCACCCTTTTTCGAGCA 59.238 50.000 0.00 0.00 0.00 4.26
3293 4143 1.351017 TCTCCACCCTTTTTCGAGCAT 59.649 47.619 0.00 0.00 0.00 3.79
3294 4144 1.470098 CTCCACCCTTTTTCGAGCATG 59.530 52.381 0.00 0.00 0.00 4.06
3295 4145 1.073125 TCCACCCTTTTTCGAGCATGA 59.927 47.619 0.00 0.00 0.00 3.07
3296 4146 1.470098 CCACCCTTTTTCGAGCATGAG 59.530 52.381 0.00 0.00 0.00 2.90
3297 4147 1.470098 CACCCTTTTTCGAGCATGAGG 59.530 52.381 0.00 0.00 0.00 3.86
3298 4148 1.073923 ACCCTTTTTCGAGCATGAGGT 59.926 47.619 0.00 0.00 0.00 3.85
3299 4149 2.162681 CCCTTTTTCGAGCATGAGGTT 58.837 47.619 0.00 0.00 0.00 3.50
3300 4150 2.558359 CCCTTTTTCGAGCATGAGGTTT 59.442 45.455 0.00 0.00 0.00 3.27
3301 4151 3.005791 CCCTTTTTCGAGCATGAGGTTTT 59.994 43.478 0.00 0.00 0.00 2.43
3302 4152 4.501400 CCCTTTTTCGAGCATGAGGTTTTT 60.501 41.667 0.00 0.00 0.00 1.94
3474 4329 2.507407 AACAACCGGCAGGACAATAT 57.493 45.000 10.86 0.00 41.02 1.28
3525 4384 0.039618 AGCCATCCAAACCGGTTGAT 59.960 50.000 23.08 17.21 39.87 2.57
3537 4396 0.179084 CGGTTGATGATAGCCCGTGT 60.179 55.000 0.00 0.00 34.10 4.49
3552 4411 1.484653 CCGTGTTACCATCTCCCATCA 59.515 52.381 0.00 0.00 0.00 3.07
3566 4425 1.064463 CCCATCAGTTGCACCCAGTAT 60.064 52.381 0.00 0.00 0.00 2.12
3582 4441 2.092212 CAGTATCCAAATGCTCCCTGGT 60.092 50.000 0.00 0.00 0.00 4.00
3609 4468 1.343465 AGGAGTGAGTAACAACCACGG 59.657 52.381 0.00 0.00 36.06 4.94
3717 4577 0.525761 TAGCCCAAAGAAATGCGCAC 59.474 50.000 14.90 0.00 0.00 5.34
3848 4708 0.719465 CGCCAAAGTAACTTCGCGAT 59.281 50.000 10.88 0.00 41.44 4.58
3885 4745 4.823790 AAGGTGTTGTATTGTTTCGTCC 57.176 40.909 0.00 0.00 0.00 4.79
3901 4761 5.766150 TTCGTCCTGATCACAAAAACAAT 57.234 34.783 0.00 0.00 0.00 2.71
3906 4766 5.739161 GTCCTGATCACAAAAACAATATCGC 59.261 40.000 0.00 0.00 0.00 4.58
3945 4805 6.855836 TCGTCGCTTTAGAAGGTTATCTTTA 58.144 36.000 0.00 0.00 35.50 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.321298 GTCGTGTACATTGGCCCTGT 60.321 55.000 12.25 12.25 0.00 4.00
2 3 0.321210 TGTCGTGTACATTGGCCCTG 60.321 55.000 0.00 0.00 31.43 4.45
3 4 0.036388 CTGTCGTGTACATTGGCCCT 60.036 55.000 0.00 0.00 37.50 5.19
4 5 1.644786 GCTGTCGTGTACATTGGCCC 61.645 60.000 0.00 0.00 37.50 5.80
5 6 0.673644 AGCTGTCGTGTACATTGGCC 60.674 55.000 0.00 0.00 37.50 5.36
6 7 0.721718 GAGCTGTCGTGTACATTGGC 59.278 55.000 0.00 0.00 37.50 4.52
7 8 2.370281 AGAGCTGTCGTGTACATTGG 57.630 50.000 0.00 0.00 37.50 3.16
45 46 0.543410 ACACACCTCCGGTCCATACA 60.543 55.000 0.00 0.00 31.02 2.29
64 65 3.197983 TCCGTCTCTCAGTGATCTGACTA 59.802 47.826 14.24 4.58 44.58 2.59
76 77 1.376942 GGACTCCGTCCGTCTCTCA 60.377 63.158 0.00 0.00 43.14 3.27
87 88 1.482593 AGCTAGGTTCAATGGACTCCG 59.517 52.381 0.00 0.00 0.00 4.63
96 97 1.419762 TGCACTCCAAGCTAGGTTCAA 59.580 47.619 3.68 0.00 0.00 2.69
134 135 2.854963 TCATATCACCTGCTTGGATGC 58.145 47.619 3.40 0.00 39.71 3.91
141 142 3.368843 GCCGTATCATCATATCACCTGCT 60.369 47.826 0.00 0.00 0.00 4.24
142 143 2.932614 GCCGTATCATCATATCACCTGC 59.067 50.000 0.00 0.00 0.00 4.85
143 144 4.462508 AGCCGTATCATCATATCACCTG 57.537 45.455 0.00 0.00 0.00 4.00
144 145 4.098654 GCTAGCCGTATCATCATATCACCT 59.901 45.833 2.29 0.00 0.00 4.00
145 146 4.098654 AGCTAGCCGTATCATCATATCACC 59.901 45.833 12.13 0.00 0.00 4.02
151 171 4.116747 GCTTAGCTAGCCGTATCATCAT 57.883 45.455 12.13 0.00 44.48 2.45
213 247 3.183237 ACAGAACGCGCAAGAAATAAC 57.817 42.857 5.73 0.00 43.02 1.89
220 254 1.937359 CTGTTTACAGAACGCGCAAG 58.063 50.000 5.73 0.00 46.59 4.01
234 268 4.403113 GGCTCCTACTACTAGCTTCTGTTT 59.597 45.833 0.00 0.00 36.48 2.83
291 343 4.683781 GCTGCTTCTGTTTAGATCTATCGG 59.316 45.833 2.58 5.72 31.81 4.18
295 347 7.122799 TCAAGTAGCTGCTTCTGTTTAGATCTA 59.877 37.037 14.73 0.00 31.81 1.98
296 348 5.930837 AGTAGCTGCTTCTGTTTAGATCT 57.069 39.130 7.79 0.00 31.81 2.75
304 356 5.867903 ATCTATCAAGTAGCTGCTTCTGT 57.132 39.130 14.73 6.14 0.00 3.41
319 371 4.523083 GTGTTGGGCAAACCTATCTATCA 58.477 43.478 1.51 0.00 41.11 2.15
325 377 2.955609 CCGTGTTGGGCAAACCTAT 58.044 52.632 1.51 0.00 41.11 2.57
341 393 0.108804 TAAAGCTTGAGGTCTCGCCG 60.109 55.000 0.00 0.00 43.70 6.46
343 395 1.003108 GCTAAAGCTTGAGGTCTCGC 58.997 55.000 12.99 0.00 38.21 5.03
356 408 0.737219 GCTGACATGCAGGGCTAAAG 59.263 55.000 5.50 0.00 45.03 1.85
363 415 0.167470 CGTTTGAGCTGACATGCAGG 59.833 55.000 15.78 0.00 45.03 4.85
365 417 1.575922 GCGTTTGAGCTGACATGCA 59.424 52.632 0.00 0.00 34.99 3.96
366 418 1.154150 GGCGTTTGAGCTGACATGC 60.154 57.895 0.00 0.00 37.29 4.06
420 472 4.024218 GCACTGTAGCTCATTTGATGATCC 60.024 45.833 0.00 0.00 38.85 3.36
478 535 0.868602 CGTTGAGGTCACGTCGTGTT 60.869 55.000 23.82 11.64 34.79 3.32
487 544 1.404181 GCTAGACATGCGTTGAGGTCA 60.404 52.381 0.00 0.00 32.79 4.02
544 605 5.127194 TCGCCTAAATCAGATGTAGAGTTGT 59.873 40.000 9.04 0.00 0.00 3.32
557 619 0.391130 AGCAAGCGTCGCCTAAATCA 60.391 50.000 14.86 0.00 0.00 2.57
561 623 1.446099 CTGAGCAAGCGTCGCCTAA 60.446 57.895 14.86 0.00 0.00 2.69
562 624 2.154798 AACTGAGCAAGCGTCGCCTA 62.155 55.000 14.86 0.00 0.00 3.93
578 640 1.895798 TGATGACTTCGGAGAGCAACT 59.104 47.619 0.00 0.00 38.43 3.16
579 641 2.370281 TGATGACTTCGGAGAGCAAC 57.630 50.000 0.00 0.00 38.43 4.17
580 642 3.616956 ATTGATGACTTCGGAGAGCAA 57.383 42.857 0.00 0.00 38.43 3.91
581 643 4.736126 TTATTGATGACTTCGGAGAGCA 57.264 40.909 0.00 0.00 38.43 4.26
582 644 6.425504 CAAATTATTGATGACTTCGGAGAGC 58.574 40.000 0.00 0.00 38.94 4.09
583 645 6.259608 AGCAAATTATTGATGACTTCGGAGAG 59.740 38.462 0.00 0.00 38.94 3.20
584 646 6.115446 AGCAAATTATTGATGACTTCGGAGA 58.885 36.000 0.00 0.00 38.94 3.71
585 647 6.369059 AGCAAATTATTGATGACTTCGGAG 57.631 37.500 0.00 0.00 38.94 4.63
636 881 0.393808 TTCACATAGGCCTTTCCCGC 60.394 55.000 12.58 0.00 34.51 6.13
637 882 1.379527 GTTCACATAGGCCTTTCCCG 58.620 55.000 12.58 0.00 34.51 5.14
638 883 1.065709 TCGTTCACATAGGCCTTTCCC 60.066 52.381 12.58 0.00 34.51 3.97
640 885 3.531538 TGATCGTTCACATAGGCCTTTC 58.468 45.455 12.58 0.00 0.00 2.62
642 1055 3.627395 TTGATCGTTCACATAGGCCTT 57.373 42.857 12.58 0.00 0.00 4.35
648 1061 2.623535 CCCCGTTTGATCGTTCACATA 58.376 47.619 0.00 0.00 0.00 2.29
653 1066 2.746803 CGGCCCCGTTTGATCGTTC 61.747 63.158 0.00 0.00 34.35 3.95
655 1068 4.770874 CCGGCCCCGTTTGATCGT 62.771 66.667 5.93 0.00 37.81 3.73
687 1312 2.359850 GCATGGACAACAGCGGGA 60.360 61.111 0.00 0.00 0.00 5.14
916 1642 2.972625 TGTATCATATTAGCAGGGCGC 58.027 47.619 0.00 0.00 42.91 6.53
917 1643 5.940192 TTTTGTATCATATTAGCAGGGCG 57.060 39.130 0.00 0.00 0.00 6.13
918 1644 6.434028 TCCATTTTGTATCATATTAGCAGGGC 59.566 38.462 0.00 0.00 0.00 5.19
1014 1767 1.152546 GGAACTTGGTTGGCTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
1053 1809 1.536073 CCTGGCTGAACTCTCGTGGA 61.536 60.000 0.00 0.00 0.00 4.02
1130 1890 2.414481 CTCCGCAGATGACTTCTTGTTG 59.586 50.000 0.00 0.00 29.93 3.33
1133 1893 1.205655 TCCTCCGCAGATGACTTCTTG 59.794 52.381 0.00 0.00 29.93 3.02
1229 2001 4.166011 GCCACGTTGAGCATCGGC 62.166 66.667 6.00 0.00 38.61 5.54
1664 2436 3.063045 GTGCGTACATACCTTTAAGTGGC 59.937 47.826 0.00 0.00 0.00 5.01
1670 2442 6.864360 AAAAAGTGTGCGTACATACCTTTA 57.136 33.333 16.92 0.00 38.59 1.85
1695 2483 2.912771 TCGAGCTGAAGGAACAAAACA 58.087 42.857 0.00 0.00 0.00 2.83
1696 2484 3.814945 CATCGAGCTGAAGGAACAAAAC 58.185 45.455 0.00 0.00 0.00 2.43
1701 2489 1.424493 CCGCATCGAGCTGAAGGAAC 61.424 60.000 0.00 0.00 42.61 3.62
1730 2573 0.885879 TAAGAGCTTCGAACGGCAGA 59.114 50.000 11.45 0.00 0.00 4.26
1735 2578 7.060518 CAGATATTCAGATAAGAGCTTCGAACG 59.939 40.741 0.00 0.00 0.00 3.95
1737 2580 7.864882 CACAGATATTCAGATAAGAGCTTCGAA 59.135 37.037 0.00 0.00 0.00 3.71
1791 2640 1.593006 CGTGTCAAGGTATCCATTCGC 59.407 52.381 0.00 0.00 0.00 4.70
1796 2645 1.216977 CGGCGTGTCAAGGTATCCA 59.783 57.895 0.00 0.00 0.00 3.41
2027 2876 4.787280 AGAGGGAGTGGGCCGAGG 62.787 72.222 0.00 0.00 0.00 4.63
2090 2939 0.689080 CCTGCTCCTTCCAGAGGCTA 60.689 60.000 0.00 0.00 45.87 3.93
2150 2999 1.047739 CGAAGTTGACGTACACGACC 58.952 55.000 9.04 0.74 43.02 4.79
2264 3113 4.373116 GCGTCGCCCTTCACCAGA 62.373 66.667 5.75 0.00 0.00 3.86
2375 3224 1.300620 CGTCAGGAACGCTCCAACA 60.301 57.895 7.76 0.00 45.76 3.33
2396 3245 2.978824 GCCGAGTTCCAGCCACTA 59.021 61.111 0.00 0.00 0.00 2.74
2558 3407 2.549563 CCCTTCCATGATCTCCGTGATG 60.550 54.545 0.00 0.00 35.14 3.07
2600 3449 0.323451 TCCACTCCTGCGCTCTCTTA 60.323 55.000 9.73 0.00 0.00 2.10
2676 3525 2.734723 CACGTCGCTGACCAGGTG 60.735 66.667 0.00 0.00 0.00 4.00
2706 3555 6.283544 AGATCGATCGATGTAGACCTAGTA 57.716 41.667 33.86 0.03 34.60 1.82
2712 3561 4.145276 CGTGAAGATCGATCGATGTAGAC 58.855 47.826 33.86 24.92 34.60 2.59
2723 3572 6.688637 TTCTCTAATTACCGTGAAGATCGA 57.311 37.500 0.00 0.00 0.00 3.59
2724 3573 6.750501 TGTTTCTCTAATTACCGTGAAGATCG 59.249 38.462 0.00 0.00 0.00 3.69
2725 3574 7.760340 AGTGTTTCTCTAATTACCGTGAAGATC 59.240 37.037 0.00 0.00 0.00 2.75
2726 3575 7.612677 AGTGTTTCTCTAATTACCGTGAAGAT 58.387 34.615 0.00 0.00 0.00 2.40
2757 3606 9.694137 AAGAAGCAAATAAGATATACTCCGTAC 57.306 33.333 0.00 0.00 0.00 3.67
2781 3630 3.678548 CGGAAGGGACGAACTTTCTTAAG 59.321 47.826 0.00 0.00 37.40 1.85
2796 3645 1.539929 GCATCATCACTCTCGGAAGGG 60.540 57.143 0.00 0.00 0.00 3.95
2850 3700 1.374252 ACTCCGTACAAAGCTGCCG 60.374 57.895 0.00 0.00 0.00 5.69
2860 3710 1.536284 GCCTACATCAGCACTCCGTAC 60.536 57.143 0.00 0.00 0.00 3.67
2898 3748 6.631971 TCATGTTGATGTAGAGCACAAAAA 57.368 33.333 0.00 0.00 41.55 1.94
2899 3749 6.614160 CATCATGTTGATGTAGAGCACAAAA 58.386 36.000 8.92 0.00 46.80 2.44
2900 3750 6.185852 CATCATGTTGATGTAGAGCACAAA 57.814 37.500 8.92 0.00 46.80 2.83
2901 3751 5.806366 CATCATGTTGATGTAGAGCACAA 57.194 39.130 8.92 0.00 46.80 3.33
2912 3762 7.560991 TGGATTAAAAGTAGCCATCATGTTGAT 59.439 33.333 5.30 0.00 37.65 2.57
2913 3763 6.889177 TGGATTAAAAGTAGCCATCATGTTGA 59.111 34.615 5.30 0.00 0.00 3.18
2914 3764 6.974622 GTGGATTAAAAGTAGCCATCATGTTG 59.025 38.462 0.00 0.00 0.00 3.33
2915 3765 6.663093 TGTGGATTAAAAGTAGCCATCATGTT 59.337 34.615 0.00 0.00 0.00 2.71
2916 3766 6.186957 TGTGGATTAAAAGTAGCCATCATGT 58.813 36.000 0.00 0.00 0.00 3.21
2917 3767 6.698008 TGTGGATTAAAAGTAGCCATCATG 57.302 37.500 0.00 0.00 0.00 3.07
2918 3768 7.781693 AGAATGTGGATTAAAAGTAGCCATCAT 59.218 33.333 0.00 0.00 0.00 2.45
2919 3769 7.118723 AGAATGTGGATTAAAAGTAGCCATCA 58.881 34.615 0.00 0.00 0.00 3.07
2920 3770 7.573968 AGAATGTGGATTAAAAGTAGCCATC 57.426 36.000 0.00 0.00 0.00 3.51
2921 3771 7.961326 AAGAATGTGGATTAAAAGTAGCCAT 57.039 32.000 0.00 0.00 0.00 4.40
2922 3772 7.232534 ACAAAGAATGTGGATTAAAAGTAGCCA 59.767 33.333 0.00 0.00 41.93 4.75
2923 3773 7.602753 ACAAAGAATGTGGATTAAAAGTAGCC 58.397 34.615 0.00 0.00 41.93 3.93
2938 3788 9.897744 CTACATACATGAAAACACAAAGAATGT 57.102 29.630 0.00 0.00 45.34 2.71
2939 3789 9.897744 ACTACATACATGAAAACACAAAGAATG 57.102 29.630 0.00 0.00 0.00 2.67
2942 3792 9.990360 TCTACTACATACATGAAAACACAAAGA 57.010 29.630 0.00 0.00 0.00 2.52
2977 3827 9.435688 GGCAGAAAAATGTGGATTAAATTTACT 57.564 29.630 0.00 0.00 0.00 2.24
2978 3828 9.213799 TGGCAGAAAAATGTGGATTAAATTTAC 57.786 29.630 0.00 0.00 0.00 2.01
2979 3829 9.213799 GTGGCAGAAAAATGTGGATTAAATTTA 57.786 29.630 0.00 0.00 0.00 1.40
2980 3830 7.174772 GGTGGCAGAAAAATGTGGATTAAATTT 59.825 33.333 0.00 0.00 0.00 1.82
2981 3831 6.654582 GGTGGCAGAAAAATGTGGATTAAATT 59.345 34.615 0.00 0.00 0.00 1.82
2982 3832 6.172630 GGTGGCAGAAAAATGTGGATTAAAT 58.827 36.000 0.00 0.00 0.00 1.40
2983 3833 5.070981 TGGTGGCAGAAAAATGTGGATTAAA 59.929 36.000 0.00 0.00 0.00 1.52
2984 3834 4.590647 TGGTGGCAGAAAAATGTGGATTAA 59.409 37.500 0.00 0.00 0.00 1.40
2985 3835 4.155709 TGGTGGCAGAAAAATGTGGATTA 58.844 39.130 0.00 0.00 0.00 1.75
2986 3836 2.971330 TGGTGGCAGAAAAATGTGGATT 59.029 40.909 0.00 0.00 0.00 3.01
2987 3837 2.607499 TGGTGGCAGAAAAATGTGGAT 58.393 42.857 0.00 0.00 0.00 3.41
2988 3838 2.079170 TGGTGGCAGAAAAATGTGGA 57.921 45.000 0.00 0.00 0.00 4.02
2989 3839 2.037511 ACATGGTGGCAGAAAAATGTGG 59.962 45.455 0.00 0.00 0.00 4.17
2990 3840 3.389925 ACATGGTGGCAGAAAAATGTG 57.610 42.857 0.00 0.00 0.00 3.21
2991 3841 3.894427 TGTACATGGTGGCAGAAAAATGT 59.106 39.130 0.00 0.00 33.18 2.71
2992 3842 4.218200 TCTGTACATGGTGGCAGAAAAATG 59.782 41.667 0.00 0.00 33.15 2.32
2993 3843 4.406456 TCTGTACATGGTGGCAGAAAAAT 58.594 39.130 0.00 0.00 33.15 1.82
2994 3844 3.826524 TCTGTACATGGTGGCAGAAAAA 58.173 40.909 0.00 0.00 33.15 1.94
2995 3845 3.500448 TCTGTACATGGTGGCAGAAAA 57.500 42.857 0.00 0.00 33.15 2.29
2996 3846 3.346315 CATCTGTACATGGTGGCAGAAA 58.654 45.455 12.38 0.00 37.18 2.52
2997 3847 2.940971 GCATCTGTACATGGTGGCAGAA 60.941 50.000 12.38 0.00 37.18 3.02
2998 3848 1.407299 GCATCTGTACATGGTGGCAGA 60.407 52.381 0.00 11.28 37.69 4.26
2999 3849 1.019673 GCATCTGTACATGGTGGCAG 58.980 55.000 0.00 0.00 0.00 4.85
3000 3850 0.327591 TGCATCTGTACATGGTGGCA 59.672 50.000 0.00 0.00 0.00 4.92
3001 3851 1.462616 TTGCATCTGTACATGGTGGC 58.537 50.000 0.00 0.00 0.00 5.01
3002 3852 4.400251 AGAATTTGCATCTGTACATGGTGG 59.600 41.667 0.00 0.00 0.00 4.61
3003 3853 5.124297 TGAGAATTTGCATCTGTACATGGTG 59.876 40.000 0.00 0.00 0.00 4.17
3004 3854 5.255687 TGAGAATTTGCATCTGTACATGGT 58.744 37.500 0.00 0.00 0.00 3.55
3005 3855 5.823209 TGAGAATTTGCATCTGTACATGG 57.177 39.130 0.00 0.00 0.00 3.66
3006 3856 5.685954 GCATGAGAATTTGCATCTGTACATG 59.314 40.000 0.00 9.81 38.72 3.21
3007 3857 5.221185 GGCATGAGAATTTGCATCTGTACAT 60.221 40.000 0.00 0.00 40.66 2.29
3008 3858 4.096833 GGCATGAGAATTTGCATCTGTACA 59.903 41.667 0.00 0.00 40.66 2.90
3009 3859 4.337555 AGGCATGAGAATTTGCATCTGTAC 59.662 41.667 0.00 0.00 40.66 2.90
3010 3860 4.529897 AGGCATGAGAATTTGCATCTGTA 58.470 39.130 0.00 0.00 40.66 2.74
3011 3861 3.362706 AGGCATGAGAATTTGCATCTGT 58.637 40.909 0.00 0.00 40.66 3.41
3012 3862 4.386867 AAGGCATGAGAATTTGCATCTG 57.613 40.909 0.00 0.00 40.66 2.90
3013 3863 5.416271 AAAAGGCATGAGAATTTGCATCT 57.584 34.783 0.00 0.00 40.66 2.90
3035 3885 4.162509 AGGTTTTTCCGATGAACCCAAAAA 59.837 37.500 8.91 0.00 42.98 1.94
3036 3886 3.707102 AGGTTTTTCCGATGAACCCAAAA 59.293 39.130 8.91 0.00 42.98 2.44
3037 3887 3.301274 AGGTTTTTCCGATGAACCCAAA 58.699 40.909 8.91 0.00 42.98 3.28
3038 3888 2.952116 AGGTTTTTCCGATGAACCCAA 58.048 42.857 8.91 0.00 42.98 4.12
3039 3889 2.668144 AGGTTTTTCCGATGAACCCA 57.332 45.000 8.91 0.00 42.98 4.51
3040 3890 3.319689 TCAAAGGTTTTTCCGATGAACCC 59.680 43.478 8.91 0.00 42.98 4.11
3041 3891 4.577834 TCAAAGGTTTTTCCGATGAACC 57.422 40.909 5.64 5.64 42.44 3.62
3042 3892 8.647226 CATTATTCAAAGGTTTTTCCGATGAAC 58.353 33.333 8.61 0.00 43.15 3.18
3043 3893 7.816995 CCATTATTCAAAGGTTTTTCCGATGAA 59.183 33.333 8.78 8.78 43.84 2.57
3044 3894 7.319646 CCATTATTCAAAGGTTTTTCCGATGA 58.680 34.615 0.00 0.00 41.99 2.92
3045 3895 6.035975 GCCATTATTCAAAGGTTTTTCCGATG 59.964 38.462 0.00 0.00 41.99 3.84
3046 3896 6.106003 GCCATTATTCAAAGGTTTTTCCGAT 58.894 36.000 0.00 0.00 41.99 4.18
3047 3897 5.474825 GCCATTATTCAAAGGTTTTTCCGA 58.525 37.500 0.00 0.00 41.99 4.55
3048 3898 4.629634 GGCCATTATTCAAAGGTTTTTCCG 59.370 41.667 0.00 0.00 41.99 4.30
3049 3899 5.804639 AGGCCATTATTCAAAGGTTTTTCC 58.195 37.500 5.01 0.00 0.00 3.13
3050 3900 7.744087 AAAGGCCATTATTCAAAGGTTTTTC 57.256 32.000 5.01 0.00 0.00 2.29
3051 3901 8.532186 AAAAAGGCCATTATTCAAAGGTTTTT 57.468 26.923 5.01 1.27 30.14 1.94
3052 3902 9.634021 TTAAAAAGGCCATTATTCAAAGGTTTT 57.366 25.926 5.01 0.00 0.00 2.43
3053 3903 9.806448 ATTAAAAAGGCCATTATTCAAAGGTTT 57.194 25.926 5.01 0.00 0.00 3.27
3054 3904 9.230122 CATTAAAAAGGCCATTATTCAAAGGTT 57.770 29.630 5.01 0.00 0.00 3.50
3055 3905 8.382405 ACATTAAAAAGGCCATTATTCAAAGGT 58.618 29.630 5.01 0.00 0.00 3.50
3056 3906 8.667463 CACATTAAAAAGGCCATTATTCAAAGG 58.333 33.333 5.01 0.00 0.00 3.11
3057 3907 8.667463 CCACATTAAAAAGGCCATTATTCAAAG 58.333 33.333 5.01 0.00 0.00 2.77
3058 3908 7.609532 CCCACATTAAAAAGGCCATTATTCAAA 59.390 33.333 5.01 0.00 0.00 2.69
3059 3909 7.038017 TCCCACATTAAAAAGGCCATTATTCAA 60.038 33.333 5.01 0.00 0.00 2.69
3060 3910 6.441924 TCCCACATTAAAAAGGCCATTATTCA 59.558 34.615 5.01 0.00 0.00 2.57
3061 3911 6.883744 TCCCACATTAAAAAGGCCATTATTC 58.116 36.000 5.01 0.00 0.00 1.75
3062 3912 6.671779 TCTCCCACATTAAAAAGGCCATTATT 59.328 34.615 5.01 0.00 0.00 1.40
3063 3913 6.201591 TCTCCCACATTAAAAAGGCCATTAT 58.798 36.000 5.01 0.00 0.00 1.28
3064 3914 5.584913 TCTCCCACATTAAAAAGGCCATTA 58.415 37.500 5.01 0.00 0.00 1.90
3065 3915 4.424842 TCTCCCACATTAAAAAGGCCATT 58.575 39.130 5.01 0.00 0.00 3.16
3066 3916 4.059773 TCTCCCACATTAAAAAGGCCAT 57.940 40.909 5.01 0.00 0.00 4.40
3067 3917 3.534357 TCTCCCACATTAAAAAGGCCA 57.466 42.857 5.01 0.00 0.00 5.36
3068 3918 3.576550 TGTTCTCCCACATTAAAAAGGCC 59.423 43.478 0.00 0.00 0.00 5.19
3069 3919 4.864704 TGTTCTCCCACATTAAAAAGGC 57.135 40.909 0.00 0.00 0.00 4.35
3070 3920 6.405278 ACTTGTTCTCCCACATTAAAAAGG 57.595 37.500 0.00 0.00 0.00 3.11
3071 3921 9.626045 GAATACTTGTTCTCCCACATTAAAAAG 57.374 33.333 0.00 0.00 0.00 2.27
3072 3922 9.362151 AGAATACTTGTTCTCCCACATTAAAAA 57.638 29.630 0.00 0.00 33.24 1.94
3073 3923 8.934023 AGAATACTTGTTCTCCCACATTAAAA 57.066 30.769 0.00 0.00 33.24 1.52
3074 3924 8.934023 AAGAATACTTGTTCTCCCACATTAAA 57.066 30.769 0.00 0.00 37.46 1.52
3076 3926 9.667107 CTTAAGAATACTTGTTCTCCCACATTA 57.333 33.333 0.00 0.00 37.46 1.90
3077 3927 8.164070 ACTTAAGAATACTTGTTCTCCCACATT 58.836 33.333 10.09 0.00 37.46 2.71
3078 3928 7.690256 ACTTAAGAATACTTGTTCTCCCACAT 58.310 34.615 10.09 0.00 37.46 3.21
3079 3929 7.074653 ACTTAAGAATACTTGTTCTCCCACA 57.925 36.000 10.09 0.00 37.46 4.17
3080 3930 7.981102 AACTTAAGAATACTTGTTCTCCCAC 57.019 36.000 10.09 0.00 37.46 4.61
3081 3931 7.040686 GCAAACTTAAGAATACTTGTTCTCCCA 60.041 37.037 10.09 0.00 37.46 4.37
3082 3932 7.306213 GCAAACTTAAGAATACTTGTTCTCCC 58.694 38.462 10.09 0.00 37.46 4.30
3083 3933 7.040686 TGGCAAACTTAAGAATACTTGTTCTCC 60.041 37.037 10.09 2.70 37.46 3.71
3084 3934 7.871853 TGGCAAACTTAAGAATACTTGTTCTC 58.128 34.615 10.09 0.00 37.46 2.87
3085 3935 7.817418 TGGCAAACTTAAGAATACTTGTTCT 57.183 32.000 10.09 0.00 40.05 3.01
3086 3936 8.082242 ACATGGCAAACTTAAGAATACTTGTTC 58.918 33.333 10.09 3.25 37.53 3.18
3087 3937 7.951591 ACATGGCAAACTTAAGAATACTTGTT 58.048 30.769 10.09 0.00 37.53 2.83
3088 3938 7.524717 ACATGGCAAACTTAAGAATACTTGT 57.475 32.000 10.09 6.98 37.53 3.16
3089 3939 9.341899 GTAACATGGCAAACTTAAGAATACTTG 57.658 33.333 10.09 5.73 37.53 3.16
3090 3940 8.234546 CGTAACATGGCAAACTTAAGAATACTT 58.765 33.333 10.09 0.00 39.81 2.24
3091 3941 7.604927 TCGTAACATGGCAAACTTAAGAATACT 59.395 33.333 10.09 0.00 0.00 2.12
3092 3942 7.745015 TCGTAACATGGCAAACTTAAGAATAC 58.255 34.615 10.09 0.00 0.00 1.89
3093 3943 7.908827 TCGTAACATGGCAAACTTAAGAATA 57.091 32.000 10.09 0.00 0.00 1.75
3094 3944 6.811253 TCGTAACATGGCAAACTTAAGAAT 57.189 33.333 10.09 0.00 0.00 2.40
3095 3945 6.811253 ATCGTAACATGGCAAACTTAAGAA 57.189 33.333 10.09 0.00 0.00 2.52
3096 3946 6.811253 AATCGTAACATGGCAAACTTAAGA 57.189 33.333 10.09 0.00 0.00 2.10
3097 3947 7.593273 TGAAAATCGTAACATGGCAAACTTAAG 59.407 33.333 0.00 0.00 0.00 1.85
3098 3948 7.426410 TGAAAATCGTAACATGGCAAACTTAA 58.574 30.769 0.00 0.00 0.00 1.85
3099 3949 6.971602 TGAAAATCGTAACATGGCAAACTTA 58.028 32.000 0.00 0.00 0.00 2.24
3100 3950 5.837437 TGAAAATCGTAACATGGCAAACTT 58.163 33.333 0.00 0.00 0.00 2.66
3101 3951 5.446143 TGAAAATCGTAACATGGCAAACT 57.554 34.783 0.00 0.00 0.00 2.66
3102 3952 6.704512 AATGAAAATCGTAACATGGCAAAC 57.295 33.333 0.00 0.00 0.00 2.93
3103 3953 7.721286 AAAATGAAAATCGTAACATGGCAAA 57.279 28.000 0.00 0.00 0.00 3.68
3104 3954 7.721286 AAAAATGAAAATCGTAACATGGCAA 57.279 28.000 0.00 0.00 0.00 4.52
3161 4011 9.787532 GCAAAATGTGACTATAGCAAAAAGATA 57.212 29.630 0.00 0.00 0.00 1.98
3162 4012 8.306038 TGCAAAATGTGACTATAGCAAAAAGAT 58.694 29.630 0.00 0.00 0.00 2.40
3163 4013 7.656412 TGCAAAATGTGACTATAGCAAAAAGA 58.344 30.769 0.00 0.00 0.00 2.52
3164 4014 7.872163 TGCAAAATGTGACTATAGCAAAAAG 57.128 32.000 0.00 0.00 0.00 2.27
3165 4015 8.654230 TTTGCAAAATGTGACTATAGCAAAAA 57.346 26.923 10.02 0.00 44.59 1.94
3168 4018 8.830201 AAATTTGCAAAATGTGACTATAGCAA 57.170 26.923 17.19 0.00 38.76 3.91
3196 4046 9.826574 CCATCCATGAAACATAGATCAAAAATT 57.173 29.630 0.00 0.00 0.00 1.82
3197 4047 9.204337 TCCATCCATGAAACATAGATCAAAAAT 57.796 29.630 0.00 0.00 0.00 1.82
3198 4048 8.469200 GTCCATCCATGAAACATAGATCAAAAA 58.531 33.333 0.00 0.00 0.00 1.94
3199 4049 7.201723 CGTCCATCCATGAAACATAGATCAAAA 60.202 37.037 0.00 0.00 0.00 2.44
3200 4050 6.260714 CGTCCATCCATGAAACATAGATCAAA 59.739 38.462 0.00 0.00 0.00 2.69
3201 4051 5.759763 CGTCCATCCATGAAACATAGATCAA 59.240 40.000 0.00 0.00 0.00 2.57
3202 4052 5.163311 ACGTCCATCCATGAAACATAGATCA 60.163 40.000 0.00 0.00 0.00 2.92
3203 4053 5.300752 ACGTCCATCCATGAAACATAGATC 58.699 41.667 0.00 0.00 0.00 2.75
3204 4054 5.070981 AGACGTCCATCCATGAAACATAGAT 59.929 40.000 13.01 0.00 0.00 1.98
3205 4055 4.405680 AGACGTCCATCCATGAAACATAGA 59.594 41.667 13.01 0.00 0.00 1.98
3206 4056 4.509230 CAGACGTCCATCCATGAAACATAG 59.491 45.833 13.01 0.00 0.00 2.23
3207 4057 4.081142 ACAGACGTCCATCCATGAAACATA 60.081 41.667 13.01 0.00 0.00 2.29
3208 4058 3.273434 CAGACGTCCATCCATGAAACAT 58.727 45.455 13.01 0.00 0.00 2.71
3209 4059 2.038426 ACAGACGTCCATCCATGAAACA 59.962 45.455 13.01 0.00 0.00 2.83
3210 4060 2.673368 GACAGACGTCCATCCATGAAAC 59.327 50.000 13.01 0.00 36.02 2.78
3211 4061 2.673893 CGACAGACGTCCATCCATGAAA 60.674 50.000 13.01 0.00 39.11 2.69
3212 4062 1.135112 CGACAGACGTCCATCCATGAA 60.135 52.381 13.01 0.00 39.11 2.57
3213 4063 0.455815 CGACAGACGTCCATCCATGA 59.544 55.000 13.01 0.00 39.11 3.07
3214 4064 0.528466 CCGACAGACGTCCATCCATG 60.528 60.000 13.01 5.24 39.11 3.66
3215 4065 1.676678 CCCGACAGACGTCCATCCAT 61.677 60.000 13.01 0.00 39.11 3.41
3216 4066 2.348104 CCCGACAGACGTCCATCCA 61.348 63.158 13.01 0.00 39.11 3.41
3217 4067 2.494918 CCCGACAGACGTCCATCC 59.505 66.667 13.01 0.00 39.11 3.51
3218 4068 2.050350 TCCCCGACAGACGTCCATC 61.050 63.158 13.01 9.27 39.11 3.51
3219 4069 2.036731 TCCCCGACAGACGTCCAT 59.963 61.111 13.01 0.00 39.11 3.41
3220 4070 2.987547 GTCCCCGACAGACGTCCA 60.988 66.667 13.01 0.00 39.11 4.02
3221 4071 3.756727 GGTCCCCGACAGACGTCC 61.757 72.222 13.01 0.00 39.11 4.79
3222 4072 3.756727 GGGTCCCCGACAGACGTC 61.757 72.222 7.70 7.70 40.78 4.34
3232 4082 1.492764 TTAGATCTCAACGGGTCCCC 58.507 55.000 0.00 0.00 0.00 4.81
3233 4083 2.742204 GCTTTAGATCTCAACGGGTCCC 60.742 54.545 0.00 0.00 0.00 4.46
3234 4084 2.093658 TGCTTTAGATCTCAACGGGTCC 60.094 50.000 0.00 0.00 0.00 4.46
3235 4085 2.930682 GTGCTTTAGATCTCAACGGGTC 59.069 50.000 0.00 0.00 0.00 4.46
3236 4086 2.301870 TGTGCTTTAGATCTCAACGGGT 59.698 45.455 0.00 0.00 0.00 5.28
3237 4087 2.972625 TGTGCTTTAGATCTCAACGGG 58.027 47.619 0.00 0.00 0.00 5.28
3238 4088 3.125316 GGTTGTGCTTTAGATCTCAACGG 59.875 47.826 13.50 0.00 37.48 4.44
3239 4089 3.745975 TGGTTGTGCTTTAGATCTCAACG 59.254 43.478 13.50 2.07 37.48 4.10
3240 4090 4.515191 TGTGGTTGTGCTTTAGATCTCAAC 59.485 41.667 12.14 12.14 36.51 3.18
3241 4091 4.515191 GTGTGGTTGTGCTTTAGATCTCAA 59.485 41.667 0.00 0.00 0.00 3.02
3242 4092 4.065088 GTGTGGTTGTGCTTTAGATCTCA 58.935 43.478 0.00 0.00 0.00 3.27
3243 4093 3.437049 GGTGTGGTTGTGCTTTAGATCTC 59.563 47.826 0.00 0.00 0.00 2.75
3244 4094 3.073062 AGGTGTGGTTGTGCTTTAGATCT 59.927 43.478 0.00 0.00 0.00 2.75
3245 4095 3.412386 AGGTGTGGTTGTGCTTTAGATC 58.588 45.455 0.00 0.00 0.00 2.75
3246 4096 3.073062 AGAGGTGTGGTTGTGCTTTAGAT 59.927 43.478 0.00 0.00 0.00 1.98
3247 4097 2.438021 AGAGGTGTGGTTGTGCTTTAGA 59.562 45.455 0.00 0.00 0.00 2.10
3248 4098 2.808543 GAGAGGTGTGGTTGTGCTTTAG 59.191 50.000 0.00 0.00 0.00 1.85
3249 4099 2.171659 TGAGAGGTGTGGTTGTGCTTTA 59.828 45.455 0.00 0.00 0.00 1.85
3250 4100 1.064758 TGAGAGGTGTGGTTGTGCTTT 60.065 47.619 0.00 0.00 0.00 3.51
3251 4101 0.546122 TGAGAGGTGTGGTTGTGCTT 59.454 50.000 0.00 0.00 0.00 3.91
3252 4102 0.767375 ATGAGAGGTGTGGTTGTGCT 59.233 50.000 0.00 0.00 0.00 4.40
3253 4103 1.160137 GATGAGAGGTGTGGTTGTGC 58.840 55.000 0.00 0.00 0.00 4.57
3254 4104 2.301296 AGAGATGAGAGGTGTGGTTGTG 59.699 50.000 0.00 0.00 0.00 3.33
3255 4105 2.564947 GAGAGATGAGAGGTGTGGTTGT 59.435 50.000 0.00 0.00 0.00 3.32
3256 4106 2.093764 GGAGAGATGAGAGGTGTGGTTG 60.094 54.545 0.00 0.00 0.00 3.77
3257 4107 2.183679 GGAGAGATGAGAGGTGTGGTT 58.816 52.381 0.00 0.00 0.00 3.67
3258 4108 1.077828 TGGAGAGATGAGAGGTGTGGT 59.922 52.381 0.00 0.00 0.00 4.16
3259 4109 1.480137 GTGGAGAGATGAGAGGTGTGG 59.520 57.143 0.00 0.00 0.00 4.17
3260 4110 1.480137 GGTGGAGAGATGAGAGGTGTG 59.520 57.143 0.00 0.00 0.00 3.82
3261 4111 1.621072 GGGTGGAGAGATGAGAGGTGT 60.621 57.143 0.00 0.00 0.00 4.16
3262 4112 1.118838 GGGTGGAGAGATGAGAGGTG 58.881 60.000 0.00 0.00 0.00 4.00
3263 4113 1.014804 AGGGTGGAGAGATGAGAGGT 58.985 55.000 0.00 0.00 0.00 3.85
3264 4114 2.173126 AAGGGTGGAGAGATGAGAGG 57.827 55.000 0.00 0.00 0.00 3.69
3265 4115 4.512484 GAAAAAGGGTGGAGAGATGAGAG 58.488 47.826 0.00 0.00 0.00 3.20
3266 4116 3.055819 CGAAAAAGGGTGGAGAGATGAGA 60.056 47.826 0.00 0.00 0.00 3.27
3267 4117 3.055819 TCGAAAAAGGGTGGAGAGATGAG 60.056 47.826 0.00 0.00 0.00 2.90
3268 4118 2.903784 TCGAAAAAGGGTGGAGAGATGA 59.096 45.455 0.00 0.00 0.00 2.92
3269 4119 3.265791 CTCGAAAAAGGGTGGAGAGATG 58.734 50.000 0.00 0.00 0.00 2.90
3270 4120 2.355209 GCTCGAAAAAGGGTGGAGAGAT 60.355 50.000 0.00 0.00 0.00 2.75
3271 4121 1.002087 GCTCGAAAAAGGGTGGAGAGA 59.998 52.381 0.00 0.00 0.00 3.10
3272 4122 1.270839 TGCTCGAAAAAGGGTGGAGAG 60.271 52.381 0.00 0.00 0.00 3.20
3273 4123 0.762418 TGCTCGAAAAAGGGTGGAGA 59.238 50.000 0.00 0.00 0.00 3.71
3274 4124 1.470098 CATGCTCGAAAAAGGGTGGAG 59.530 52.381 0.00 0.00 0.00 3.86
3275 4125 1.073125 TCATGCTCGAAAAAGGGTGGA 59.927 47.619 0.00 0.00 0.00 4.02
3276 4126 1.470098 CTCATGCTCGAAAAAGGGTGG 59.530 52.381 0.00 0.00 0.00 4.61
3277 4127 1.470098 CCTCATGCTCGAAAAAGGGTG 59.530 52.381 0.00 0.00 0.00 4.61
3278 4128 1.073923 ACCTCATGCTCGAAAAAGGGT 59.926 47.619 0.00 0.00 0.00 4.34
3279 4129 1.826385 ACCTCATGCTCGAAAAAGGG 58.174 50.000 0.00 0.00 0.00 3.95
3280 4130 3.923017 AAACCTCATGCTCGAAAAAGG 57.077 42.857 0.00 0.00 0.00 3.11
3300 4150 5.016831 GGGCTATCCTCCTTTTCTGAAAAA 58.983 41.667 15.67 2.32 33.42 1.94
3301 4151 4.569865 GGGGCTATCCTCCTTTTCTGAAAA 60.570 45.833 14.31 14.31 35.33 2.29
3302 4152 3.053619 GGGGCTATCCTCCTTTTCTGAAA 60.054 47.826 0.00 0.00 35.33 2.69
3303 4153 2.509964 GGGGCTATCCTCCTTTTCTGAA 59.490 50.000 0.00 0.00 35.33 3.02
3304 4154 2.127708 GGGGCTATCCTCCTTTTCTGA 58.872 52.381 0.00 0.00 35.33 3.27
3305 4155 1.202698 CGGGGCTATCCTCCTTTTCTG 60.203 57.143 0.00 0.00 35.33 3.02
3306 4156 1.132500 CGGGGCTATCCTCCTTTTCT 58.868 55.000 0.00 0.00 35.33 2.52
3455 4310 2.091541 CATATTGTCCTGCCGGTTGTT 58.908 47.619 1.90 0.00 0.00 2.83
3502 4357 0.680921 ACCGGTTTGGATGGCTCATG 60.681 55.000 0.00 0.00 42.00 3.07
3537 4396 2.575735 TGCAACTGATGGGAGATGGTAA 59.424 45.455 0.00 0.00 0.00 2.85
3552 4411 2.969821 TTTGGATACTGGGTGCAACT 57.030 45.000 0.00 0.00 34.75 3.16
3566 4425 0.038166 GACACCAGGGAGCATTTGGA 59.962 55.000 3.93 0.00 35.89 3.53
3582 4441 4.222145 GGTTGTTACTCACTCCTATGGACA 59.778 45.833 0.00 0.00 0.00 4.02
3609 4468 1.274728 AGAGCTATGACATGGATCCGC 59.725 52.381 12.80 1.26 0.00 5.54
3717 4577 5.462068 TGCGTCAAGTATTCGGATTAGAATG 59.538 40.000 2.81 0.00 40.66 2.67
3810 4670 4.041075 TGGCGAACCATTCATATAGCCTTA 59.959 41.667 4.75 0.00 42.67 2.69
3848 4708 5.450818 ACACCTTTTCATAGATTGCCCTA 57.549 39.130 0.00 0.00 0.00 3.53
3885 4745 6.032775 GTGTGCGATATTGTTTTTGTGATCAG 59.967 38.462 0.00 0.00 0.00 2.90
3901 4761 2.440517 TGGGTAGGTAGTGTGCGATA 57.559 50.000 0.00 0.00 0.00 2.92
3906 4766 1.065102 CGACGATGGGTAGGTAGTGTG 59.935 57.143 0.00 0.00 0.00 3.82
3945 4805 4.833478 ACACAAGCAGATGATCCTTACT 57.167 40.909 0.00 0.00 0.00 2.24
3956 4816 2.992593 TGTGGTTTGTACACAAGCAGA 58.007 42.857 17.21 14.77 45.05 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.