Multiple sequence alignment - TraesCS6B01G347400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G347400 chr6B 100.000 3195 0 0 1 3195 611697300 611700494 0.000000e+00 5901.0
1 TraesCS6B01G347400 chr6B 79.358 872 157 21 1164 2026 611500139 611500996 2.740000e-165 592.0
2 TraesCS6B01G347400 chr6B 84.752 282 37 5 2225 2501 661915461 661915741 8.730000e-71 278.0
3 TraesCS6B01G347400 chr6D 92.331 1669 104 18 922 2569 407579440 407581105 0.000000e+00 2351.0
4 TraesCS6B01G347400 chr6D 96.941 425 7 3 483 906 407578962 407579381 0.000000e+00 708.0
5 TraesCS6B01G347400 chr6D 78.506 870 166 17 1168 2026 407522837 407523696 4.660000e-153 551.0
6 TraesCS6B01G347400 chr6D 84.691 405 46 10 2797 3191 407581156 407581554 1.070000e-104 390.0
7 TraesCS6B01G347400 chr6D 90.798 163 14 1 76 238 471940959 471940798 1.930000e-52 217.0
8 TraesCS6B01G347400 chr6A 94.654 1272 48 6 922 2188 553100109 553101365 0.000000e+00 1954.0
9 TraesCS6B01G347400 chr6A 78.777 867 163 19 1168 2026 553054971 553055824 2.150000e-156 562.0
10 TraesCS6B01G347400 chr6A 95.611 319 4 4 579 897 553099722 553100030 1.320000e-138 503.0
11 TraesCS6B01G347400 chr6A 90.233 215 18 3 371 582 553097741 553097955 8.730000e-71 278.0
12 TraesCS6B01G347400 chr6A 84.155 284 40 5 2215 2495 24674232 24673951 1.460000e-68 270.0
13 TraesCS6B01G347400 chr3B 86.219 283 32 7 2215 2495 435967474 435967751 1.860000e-77 300.0
14 TraesCS6B01G347400 chr2A 86.131 274 30 5 2225 2496 726417662 726417395 4.030000e-74 289.0
15 TraesCS6B01G347400 chr7A 84.806 283 39 4 2215 2495 8660449 8660169 6.750000e-72 281.0
16 TraesCS6B01G347400 chr7A 81.435 237 34 9 2800 3031 631445103 631444872 5.440000e-43 185.0
17 TraesCS6B01G347400 chr7A 76.471 323 41 15 2862 3166 709814311 709814006 3.320000e-30 143.0
18 TraesCS6B01G347400 chr5D 84.806 283 39 4 2215 2495 543670998 543670718 6.750000e-72 281.0
19 TraesCS6B01G347400 chr5D 91.411 163 13 1 76 238 36212469 36212308 4.150000e-54 222.0
20 TraesCS6B01G347400 chr3A 84.155 284 40 5 2215 2495 734490478 734490197 1.460000e-68 270.0
21 TraesCS6B01G347400 chr1A 84.211 285 38 6 2215 2496 181539834 181540114 1.460000e-68 270.0
22 TraesCS6B01G347400 chr2B 77.945 399 61 14 2794 3166 56053016 56053413 1.150000e-54 224.0
23 TraesCS6B01G347400 chr3D 90.964 166 14 1 73 238 563962940 563963104 4.150000e-54 222.0
24 TraesCS6B01G347400 chr3D 88.136 177 19 2 73 248 489278169 489278344 3.230000e-50 209.0
25 TraesCS6B01G347400 chr2D 90.964 166 14 1 73 238 635756628 635756792 4.150000e-54 222.0
26 TraesCS6B01G347400 chrUn 90.854 164 13 2 76 239 34092603 34092442 5.370000e-53 219.0
27 TraesCS6B01G347400 chr7D 92.258 155 11 1 76 230 456622585 456622432 5.370000e-53 219.0
28 TraesCS6B01G347400 chr7D 86.713 143 19 0 239 381 34479035 34478893 3.300000e-35 159.0
29 TraesCS6B01G347400 chr1B 90.798 163 14 1 76 238 665241480 665241319 1.930000e-52 217.0
30 TraesCS6B01G347400 chr5A 89.881 168 15 2 73 239 675386165 675386331 6.940000e-52 215.0
31 TraesCS6B01G347400 chr5A 85.549 173 25 0 2851 3023 624496251 624496423 7.040000e-42 182.0
32 TraesCS6B01G347400 chr5A 82.114 123 14 5 1162 1279 502545049 502544930 7.290000e-17 99.0
33 TraesCS6B01G347400 chr7B 83.448 145 21 3 3048 3191 703714212 703714070 7.190000e-27 132.0
34 TraesCS6B01G347400 chr4B 81.443 97 15 3 3097 3192 183489043 183489137 3.420000e-10 76.8
35 TraesCS6B01G347400 chr1D 82.558 86 15 0 290 375 472310284 472310199 3.420000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G347400 chr6B 611697300 611700494 3194 False 5901.000000 5901 100.000000 1 3195 1 chr6B.!!$F2 3194
1 TraesCS6B01G347400 chr6B 611500139 611500996 857 False 592.000000 592 79.358000 1164 2026 1 chr6B.!!$F1 862
2 TraesCS6B01G347400 chr6D 407578962 407581554 2592 False 1149.666667 2351 91.321000 483 3191 3 chr6D.!!$F2 2708
3 TraesCS6B01G347400 chr6D 407522837 407523696 859 False 551.000000 551 78.506000 1168 2026 1 chr6D.!!$F1 858
4 TraesCS6B01G347400 chr6A 553097741 553101365 3624 False 911.666667 1954 93.499333 371 2188 3 chr6A.!!$F2 1817
5 TraesCS6B01G347400 chr6A 553054971 553055824 853 False 562.000000 562 78.777000 1168 2026 1 chr6A.!!$F1 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.035739 GCCCACCTTAAACGGACAGA 59.964 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2251 4104 0.235926 GCGAGCAACAGGACTTGAAC 59.764 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.522668 CCACTGGCATGAACTTTCGA 58.477 50.000 0.00 0.00 0.00 3.71
24 25 1.879380 CCACTGGCATGAACTTTCGAA 59.121 47.619 0.00 0.00 0.00 3.71
25 26 2.489329 CCACTGGCATGAACTTTCGAAT 59.511 45.455 0.00 0.00 0.00 3.34
26 27 3.689161 CCACTGGCATGAACTTTCGAATA 59.311 43.478 0.00 0.00 0.00 1.75
27 28 4.336433 CCACTGGCATGAACTTTCGAATAT 59.664 41.667 0.00 0.00 0.00 1.28
28 29 5.163622 CCACTGGCATGAACTTTCGAATATT 60.164 40.000 0.00 0.00 0.00 1.28
29 30 6.324819 CACTGGCATGAACTTTCGAATATTT 58.675 36.000 0.00 0.00 0.00 1.40
30 31 6.252015 CACTGGCATGAACTTTCGAATATTTG 59.748 38.462 0.00 0.00 0.00 2.32
31 32 5.101628 TGGCATGAACTTTCGAATATTTGC 58.898 37.500 0.00 4.58 0.00 3.68
32 33 5.101628 GGCATGAACTTTCGAATATTTGCA 58.898 37.500 15.13 0.00 0.00 4.08
33 34 5.750067 GGCATGAACTTTCGAATATTTGCAT 59.250 36.000 15.13 6.81 0.00 3.96
34 35 6.256321 GGCATGAACTTTCGAATATTTGCATT 59.744 34.615 15.13 0.00 0.00 3.56
35 36 7.201548 GGCATGAACTTTCGAATATTTGCATTT 60.202 33.333 15.13 0.00 0.00 2.32
36 37 7.633281 GCATGAACTTTCGAATATTTGCATTTG 59.367 33.333 0.00 0.00 0.00 2.32
37 38 8.862074 CATGAACTTTCGAATATTTGCATTTGA 58.138 29.630 0.00 0.00 0.00 2.69
38 39 8.809159 TGAACTTTCGAATATTTGCATTTGAA 57.191 26.923 0.00 0.00 36.80 2.69
39 40 9.254133 TGAACTTTCGAATATTTGCATTTGAAA 57.746 25.926 11.07 11.07 42.23 2.69
46 47 8.871862 TCGAATATTTGCATTTGAAAAATGAGG 58.128 29.630 15.14 0.00 0.00 3.86
47 48 7.637132 CGAATATTTGCATTTGAAAAATGAGGC 59.363 33.333 15.14 2.58 0.00 4.70
48 49 4.728917 TTTGCATTTGAAAAATGAGGCG 57.271 36.364 15.14 0.00 0.00 5.52
49 50 2.686235 TGCATTTGAAAAATGAGGCGG 58.314 42.857 15.14 0.00 0.00 6.13
50 51 2.298446 TGCATTTGAAAAATGAGGCGGA 59.702 40.909 15.14 0.00 0.00 5.54
51 52 3.055963 TGCATTTGAAAAATGAGGCGGAT 60.056 39.130 15.14 0.00 0.00 4.18
52 53 4.159321 TGCATTTGAAAAATGAGGCGGATA 59.841 37.500 15.14 0.00 0.00 2.59
53 54 4.741676 GCATTTGAAAAATGAGGCGGATAG 59.258 41.667 15.14 0.00 0.00 2.08
54 55 4.981806 TTTGAAAAATGAGGCGGATAGG 57.018 40.909 0.00 0.00 0.00 2.57
55 56 3.924114 TGAAAAATGAGGCGGATAGGA 57.076 42.857 0.00 0.00 0.00 2.94
56 57 4.437682 TGAAAAATGAGGCGGATAGGAT 57.562 40.909 0.00 0.00 0.00 3.24
57 58 4.136796 TGAAAAATGAGGCGGATAGGATG 58.863 43.478 0.00 0.00 0.00 3.51
58 59 2.191128 AAATGAGGCGGATAGGATGC 57.809 50.000 0.00 0.00 0.00 3.91
60 61 1.892819 ATGAGGCGGATAGGATGCGG 61.893 60.000 2.57 0.00 44.69 5.69
63 64 4.314440 GCGGATAGGATGCGGCCA 62.314 66.667 2.24 0.00 44.69 5.36
64 65 2.425592 CGGATAGGATGCGGCCAA 59.574 61.111 2.24 0.00 40.62 4.52
65 66 1.227823 CGGATAGGATGCGGCCAAA 60.228 57.895 2.24 0.00 40.62 3.28
66 67 0.606401 CGGATAGGATGCGGCCAAAT 60.606 55.000 2.24 0.00 40.62 2.32
67 68 0.883833 GGATAGGATGCGGCCAAATG 59.116 55.000 2.24 0.00 0.00 2.32
68 69 1.545428 GGATAGGATGCGGCCAAATGA 60.545 52.381 2.24 0.00 0.00 2.57
69 70 2.440409 GATAGGATGCGGCCAAATGAT 58.560 47.619 2.24 0.00 0.00 2.45
70 71 1.608055 TAGGATGCGGCCAAATGATG 58.392 50.000 2.24 0.00 0.00 3.07
80 81 1.434696 CAAATGATGGAGTGGCGGC 59.565 57.895 0.00 0.00 0.00 6.53
81 82 2.114670 AAATGATGGAGTGGCGGCG 61.115 57.895 0.51 0.51 0.00 6.46
84 85 4.221422 GATGGAGTGGCGGCGCTA 62.221 66.667 32.30 24.91 0.00 4.26
85 86 4.227134 ATGGAGTGGCGGCGCTAG 62.227 66.667 32.30 2.71 0.00 3.42
90 91 3.612681 GTGGCGGCGCTAGGGATA 61.613 66.667 32.30 6.70 0.00 2.59
91 92 2.603473 TGGCGGCGCTAGGGATAT 60.603 61.111 32.30 0.00 0.00 1.63
92 93 2.214216 TGGCGGCGCTAGGGATATT 61.214 57.895 32.30 0.00 0.00 1.28
93 94 1.448013 GGCGGCGCTAGGGATATTC 60.448 63.158 32.30 6.78 0.00 1.75
94 95 1.592223 GCGGCGCTAGGGATATTCT 59.408 57.895 26.86 0.00 0.00 2.40
95 96 0.037232 GCGGCGCTAGGGATATTCTT 60.037 55.000 26.86 0.00 0.00 2.52
96 97 1.714794 CGGCGCTAGGGATATTCTTG 58.285 55.000 11.61 0.00 0.00 3.02
97 98 1.673033 CGGCGCTAGGGATATTCTTGG 60.673 57.143 11.61 0.00 0.00 3.61
98 99 1.348036 GGCGCTAGGGATATTCTTGGT 59.652 52.381 11.61 0.00 0.00 3.67
99 100 2.224548 GGCGCTAGGGATATTCTTGGTT 60.225 50.000 11.61 0.00 0.00 3.67
100 101 3.067833 GCGCTAGGGATATTCTTGGTTC 58.932 50.000 11.61 0.00 0.00 3.62
101 102 3.244249 GCGCTAGGGATATTCTTGGTTCT 60.244 47.826 11.61 0.00 0.00 3.01
102 103 4.743955 GCGCTAGGGATATTCTTGGTTCTT 60.744 45.833 11.61 0.00 0.00 2.52
103 104 4.991687 CGCTAGGGATATTCTTGGTTCTTC 59.008 45.833 0.00 0.00 0.00 2.87
104 105 5.453339 CGCTAGGGATATTCTTGGTTCTTCA 60.453 44.000 0.00 0.00 0.00 3.02
105 106 6.538263 GCTAGGGATATTCTTGGTTCTTCAT 58.462 40.000 0.00 0.00 0.00 2.57
106 107 6.429385 GCTAGGGATATTCTTGGTTCTTCATG 59.571 42.308 0.00 0.00 0.00 3.07
107 108 6.332976 AGGGATATTCTTGGTTCTTCATGT 57.667 37.500 0.00 0.00 0.00 3.21
108 109 6.125029 AGGGATATTCTTGGTTCTTCATGTG 58.875 40.000 0.00 0.00 0.00 3.21
109 110 6.069440 AGGGATATTCTTGGTTCTTCATGTGA 60.069 38.462 0.00 0.00 0.00 3.58
110 111 6.261826 GGGATATTCTTGGTTCTTCATGTGAG 59.738 42.308 0.00 0.00 0.00 3.51
111 112 6.825721 GGATATTCTTGGTTCTTCATGTGAGT 59.174 38.462 0.00 0.00 0.00 3.41
112 113 7.987458 GGATATTCTTGGTTCTTCATGTGAGTA 59.013 37.037 0.00 0.00 0.00 2.59
113 114 8.723942 ATATTCTTGGTTCTTCATGTGAGTAC 57.276 34.615 0.00 0.00 0.00 2.73
114 115 4.894784 TCTTGGTTCTTCATGTGAGTACC 58.105 43.478 15.48 15.48 0.00 3.34
115 116 3.695830 TGGTTCTTCATGTGAGTACCC 57.304 47.619 17.87 9.39 0.00 3.69
116 117 2.976185 TGGTTCTTCATGTGAGTACCCA 59.024 45.455 17.87 11.02 0.00 4.51
117 118 3.587061 TGGTTCTTCATGTGAGTACCCAT 59.413 43.478 17.87 0.00 0.00 4.00
118 119 4.780554 TGGTTCTTCATGTGAGTACCCATA 59.219 41.667 17.87 4.68 0.00 2.74
119 120 5.249622 TGGTTCTTCATGTGAGTACCCATAA 59.750 40.000 17.87 4.44 0.00 1.90
120 121 6.069673 TGGTTCTTCATGTGAGTACCCATAAT 60.070 38.462 17.87 0.00 0.00 1.28
121 122 6.828785 GGTTCTTCATGTGAGTACCCATAATT 59.171 38.462 12.98 0.00 0.00 1.40
122 123 7.339466 GGTTCTTCATGTGAGTACCCATAATTT 59.661 37.037 12.98 0.00 0.00 1.82
123 124 8.739972 GTTCTTCATGTGAGTACCCATAATTTT 58.260 33.333 0.00 0.00 0.00 1.82
124 125 8.877864 TCTTCATGTGAGTACCCATAATTTTT 57.122 30.769 0.00 0.00 0.00 1.94
125 126 9.967451 TCTTCATGTGAGTACCCATAATTTTTA 57.033 29.630 0.00 0.00 0.00 1.52
127 128 9.521841 TTCATGTGAGTACCCATAATTTTTACA 57.478 29.630 0.00 0.00 0.00 2.41
128 129 9.521841 TCATGTGAGTACCCATAATTTTTACAA 57.478 29.630 0.00 0.00 0.00 2.41
131 132 9.968870 TGTGAGTACCCATAATTTTTACAAAAC 57.031 29.630 0.00 0.00 0.00 2.43
132 133 9.968870 GTGAGTACCCATAATTTTTACAAAACA 57.031 29.630 0.00 0.00 0.00 2.83
138 139 9.674068 ACCCATAATTTTTACAAAACAAGTGTT 57.326 25.926 0.00 0.00 40.50 3.32
139 140 9.928236 CCCATAATTTTTACAAAACAAGTGTTG 57.072 29.630 1.64 1.64 38.44 3.33
146 147 9.884465 TTTTTACAAAACAAGTGTTGATTTTGG 57.116 25.926 9.96 4.94 41.05 3.28
147 148 5.544136 ACAAAACAAGTGTTGATTTTGGC 57.456 34.783 9.96 0.00 41.05 4.52
148 149 4.999950 ACAAAACAAGTGTTGATTTTGGCA 59.000 33.333 9.96 0.00 41.05 4.92
149 150 5.471456 ACAAAACAAGTGTTGATTTTGGCAA 59.529 32.000 9.96 0.00 41.05 4.52
150 151 6.016777 ACAAAACAAGTGTTGATTTTGGCAAA 60.017 30.769 8.93 8.93 41.05 3.68
151 152 6.566197 AAACAAGTGTTGATTTTGGCAAAA 57.434 29.167 25.94 25.94 38.44 2.44
152 153 5.544136 ACAAGTGTTGATTTTGGCAAAAC 57.456 34.783 26.23 19.26 34.43 2.43
153 154 4.999950 ACAAGTGTTGATTTTGGCAAAACA 59.000 33.333 26.23 21.28 36.22 2.83
154 155 5.471456 ACAAGTGTTGATTTTGGCAAAACAA 59.529 32.000 26.23 24.82 36.22 2.83
155 156 6.150809 ACAAGTGTTGATTTTGGCAAAACAAT 59.849 30.769 26.23 16.93 36.22 2.71
156 157 6.121613 AGTGTTGATTTTGGCAAAACAATG 57.878 33.333 26.23 0.00 36.22 2.82
157 158 5.879223 AGTGTTGATTTTGGCAAAACAATGA 59.121 32.000 26.23 17.58 36.22 2.57
158 159 6.543100 AGTGTTGATTTTGGCAAAACAATGAT 59.457 30.769 26.23 10.55 36.22 2.45
159 160 7.714377 AGTGTTGATTTTGGCAAAACAATGATA 59.286 29.630 26.23 15.45 36.22 2.15
160 161 8.341173 GTGTTGATTTTGGCAAAACAATGATAA 58.659 29.630 26.23 11.34 34.39 1.75
161 162 9.064706 TGTTGATTTTGGCAAAACAATGATAAT 57.935 25.926 26.23 8.36 32.37 1.28
162 163 9.896263 GTTGATTTTGGCAAAACAATGATAATT 57.104 25.926 26.23 7.62 32.37 1.40
199 200 8.618702 ACAATGATTTTGGCAAAATGAATACA 57.381 26.923 35.49 26.89 40.97 2.29
200 201 8.505625 ACAATGATTTTGGCAAAATGAATACAC 58.494 29.630 35.49 21.85 40.97 2.90
201 202 8.504815 CAATGATTTTGGCAAAATGAATACACA 58.495 29.630 35.49 25.72 40.97 3.72
202 203 8.795842 ATGATTTTGGCAAAATGAATACACAT 57.204 26.923 35.49 26.53 40.97 3.21
203 204 8.618702 TGATTTTGGCAAAATGAATACACATT 57.381 26.923 35.49 13.71 40.97 2.71
204 205 9.716531 TGATTTTGGCAAAATGAATACACATTA 57.283 25.926 35.49 9.02 40.97 1.90
209 210 9.593134 TTGGCAAAATGAATACACATTAATACC 57.407 29.630 0.00 0.00 39.19 2.73
210 211 8.200792 TGGCAAAATGAATACACATTAATACCC 58.799 33.333 0.00 0.00 39.19 3.69
211 212 7.381139 GGCAAAATGAATACACATTAATACCCG 59.619 37.037 0.00 0.00 39.19 5.28
212 213 7.381139 GCAAAATGAATACACATTAATACCCGG 59.619 37.037 0.00 0.00 39.19 5.73
213 214 8.410141 CAAAATGAATACACATTAATACCCGGT 58.590 33.333 0.00 0.00 39.19 5.28
214 215 8.528044 AAATGAATACACATTAATACCCGGTT 57.472 30.769 0.00 0.00 39.19 4.44
215 216 6.928979 TGAATACACATTAATACCCGGTTG 57.071 37.500 0.00 0.00 0.00 3.77
216 217 5.297278 TGAATACACATTAATACCCGGTTGC 59.703 40.000 0.00 0.00 0.00 4.17
217 218 3.074675 ACACATTAATACCCGGTTGCA 57.925 42.857 0.00 0.00 0.00 4.08
218 219 3.422796 ACACATTAATACCCGGTTGCAA 58.577 40.909 0.00 0.00 0.00 4.08
219 220 3.827302 ACACATTAATACCCGGTTGCAAA 59.173 39.130 0.00 0.00 0.00 3.68
220 221 4.464597 ACACATTAATACCCGGTTGCAAAT 59.535 37.500 0.00 0.00 0.00 2.32
221 222 5.046950 ACACATTAATACCCGGTTGCAAATT 60.047 36.000 0.00 0.00 0.00 1.82
222 223 5.518487 CACATTAATACCCGGTTGCAAATTC 59.482 40.000 0.00 0.00 0.00 2.17
223 224 4.722361 TTAATACCCGGTTGCAAATTCC 57.278 40.909 0.00 0.00 0.00 3.01
224 225 2.525105 ATACCCGGTTGCAAATTCCT 57.475 45.000 0.00 0.00 0.00 3.36
225 226 1.540267 TACCCGGTTGCAAATTCCTG 58.460 50.000 0.00 0.00 0.00 3.86
226 227 0.178975 ACCCGGTTGCAAATTCCTGA 60.179 50.000 0.00 0.00 0.00 3.86
227 228 0.965439 CCCGGTTGCAAATTCCTGAA 59.035 50.000 0.00 0.00 0.00 3.02
228 229 1.067635 CCCGGTTGCAAATTCCTGAAG 60.068 52.381 0.00 0.00 0.00 3.02
229 230 1.669795 CCGGTTGCAAATTCCTGAAGC 60.670 52.381 0.00 0.00 0.00 3.86
230 231 1.669795 CGGTTGCAAATTCCTGAAGCC 60.670 52.381 0.00 0.00 0.00 4.35
231 232 1.338105 GGTTGCAAATTCCTGAAGCCC 60.338 52.381 0.00 0.00 0.00 5.19
232 233 1.344114 GTTGCAAATTCCTGAAGCCCA 59.656 47.619 0.00 0.00 0.00 5.36
233 234 0.968405 TGCAAATTCCTGAAGCCCAC 59.032 50.000 0.00 0.00 0.00 4.61
234 235 0.968405 GCAAATTCCTGAAGCCCACA 59.032 50.000 0.00 0.00 0.00 4.17
235 236 1.337167 GCAAATTCCTGAAGCCCACAC 60.337 52.381 0.00 0.00 0.00 3.82
236 237 2.242043 CAAATTCCTGAAGCCCACACT 58.758 47.619 0.00 0.00 0.00 3.55
237 238 1.915141 AATTCCTGAAGCCCACACTG 58.085 50.000 0.00 0.00 0.00 3.66
238 239 1.067295 ATTCCTGAAGCCCACACTGA 58.933 50.000 0.00 0.00 0.00 3.41
239 240 0.843309 TTCCTGAAGCCCACACTGAA 59.157 50.000 0.00 0.00 0.00 3.02
240 241 0.843309 TCCTGAAGCCCACACTGAAA 59.157 50.000 0.00 0.00 0.00 2.69
241 242 1.202806 TCCTGAAGCCCACACTGAAAG 60.203 52.381 0.00 0.00 42.29 2.62
242 243 1.242076 CTGAAGCCCACACTGAAAGG 58.758 55.000 0.00 0.00 39.30 3.11
250 251 2.281761 CACTGAAAGGGTGCGGCT 60.282 61.111 0.00 0.00 39.30 5.52
251 252 2.281761 ACTGAAAGGGTGCGGCTG 60.282 61.111 0.00 0.00 39.30 4.85
252 253 3.741476 CTGAAAGGGTGCGGCTGC 61.741 66.667 11.65 11.65 43.20 5.25
271 272 4.012895 CGTTGAGCGCACCACCAC 62.013 66.667 11.47 2.39 0.00 4.16
272 273 3.660111 GTTGAGCGCACCACCACC 61.660 66.667 11.47 0.00 0.00 4.61
280 281 4.343323 CACCACCACCGCATCCCA 62.343 66.667 0.00 0.00 0.00 4.37
281 282 3.575247 ACCACCACCGCATCCCAA 61.575 61.111 0.00 0.00 0.00 4.12
282 283 2.282816 CCACCACCGCATCCCAAA 60.283 61.111 0.00 0.00 0.00 3.28
283 284 1.905843 CCACCACCGCATCCCAAAA 60.906 57.895 0.00 0.00 0.00 2.44
284 285 1.467678 CCACCACCGCATCCCAAAAA 61.468 55.000 0.00 0.00 0.00 1.94
302 303 4.737353 AAAAATAACCGAACACGACCTC 57.263 40.909 0.00 0.00 0.00 3.85
303 304 3.389925 AAATAACCGAACACGACCTCA 57.610 42.857 0.00 0.00 0.00 3.86
304 305 3.604875 AATAACCGAACACGACCTCAT 57.395 42.857 0.00 0.00 0.00 2.90
305 306 3.604875 ATAACCGAACACGACCTCATT 57.395 42.857 0.00 0.00 0.00 2.57
306 307 1.508632 AACCGAACACGACCTCATTG 58.491 50.000 0.00 0.00 0.00 2.82
307 308 0.949105 ACCGAACACGACCTCATTGC 60.949 55.000 0.00 0.00 0.00 3.56
308 309 1.635663 CCGAACACGACCTCATTGCC 61.636 60.000 0.00 0.00 0.00 4.52
309 310 1.635663 CGAACACGACCTCATTGCCC 61.636 60.000 0.00 0.00 0.00 5.36
310 311 0.605319 GAACACGACCTCATTGCCCA 60.605 55.000 0.00 0.00 0.00 5.36
311 312 0.889186 AACACGACCTCATTGCCCAC 60.889 55.000 0.00 0.00 0.00 4.61
312 313 2.040544 CACGACCTCATTGCCCACC 61.041 63.158 0.00 0.00 0.00 4.61
313 314 2.224159 ACGACCTCATTGCCCACCT 61.224 57.895 0.00 0.00 0.00 4.00
314 315 1.002134 CGACCTCATTGCCCACCTT 60.002 57.895 0.00 0.00 0.00 3.50
315 316 0.251916 CGACCTCATTGCCCACCTTA 59.748 55.000 0.00 0.00 0.00 2.69
316 317 1.339631 CGACCTCATTGCCCACCTTAA 60.340 52.381 0.00 0.00 0.00 1.85
317 318 2.802719 GACCTCATTGCCCACCTTAAA 58.197 47.619 0.00 0.00 0.00 1.52
318 319 2.492088 GACCTCATTGCCCACCTTAAAC 59.508 50.000 0.00 0.00 0.00 2.01
319 320 1.472480 CCTCATTGCCCACCTTAAACG 59.528 52.381 0.00 0.00 0.00 3.60
320 321 1.472480 CTCATTGCCCACCTTAAACGG 59.528 52.381 0.00 0.00 0.00 4.44
321 322 1.074084 TCATTGCCCACCTTAAACGGA 59.926 47.619 0.00 0.00 0.00 4.69
322 323 1.201414 CATTGCCCACCTTAAACGGAC 59.799 52.381 0.00 0.00 0.00 4.79
323 324 0.183014 TTGCCCACCTTAAACGGACA 59.817 50.000 0.00 0.00 0.00 4.02
324 325 0.250553 TGCCCACCTTAAACGGACAG 60.251 55.000 0.00 0.00 0.00 3.51
325 326 0.035739 GCCCACCTTAAACGGACAGA 59.964 55.000 0.00 0.00 0.00 3.41
326 327 1.543871 GCCCACCTTAAACGGACAGAA 60.544 52.381 0.00 0.00 0.00 3.02
327 328 2.878526 GCCCACCTTAAACGGACAGAAT 60.879 50.000 0.00 0.00 0.00 2.40
328 329 3.007635 CCCACCTTAAACGGACAGAATC 58.992 50.000 0.00 0.00 0.00 2.52
329 330 3.007635 CCACCTTAAACGGACAGAATCC 58.992 50.000 0.00 0.00 45.20 3.01
336 337 2.582436 GGACAGAATCCGGGCGAA 59.418 61.111 0.00 0.00 37.88 4.70
337 338 1.078708 GGACAGAATCCGGGCGAAA 60.079 57.895 0.00 0.00 37.88 3.46
338 339 1.366854 GGACAGAATCCGGGCGAAAC 61.367 60.000 0.00 0.00 37.88 2.78
339 340 1.693083 GACAGAATCCGGGCGAAACG 61.693 60.000 0.00 0.00 0.00 3.60
356 357 4.754667 GGACGTCCGCTTGGGGTC 62.755 72.222 20.85 0.00 36.48 4.46
369 370 4.681978 GGGTCGTGCGCTGGAGTT 62.682 66.667 9.73 0.00 0.00 3.01
370 371 3.414700 GGTCGTGCGCTGGAGTTG 61.415 66.667 9.73 0.00 0.00 3.16
371 372 2.355837 GTCGTGCGCTGGAGTTGA 60.356 61.111 9.73 0.00 0.00 3.18
372 373 2.355837 TCGTGCGCTGGAGTTGAC 60.356 61.111 9.73 0.00 0.00 3.18
373 374 3.414700 CGTGCGCTGGAGTTGACC 61.415 66.667 9.73 0.00 0.00 4.02
374 375 2.031163 GTGCGCTGGAGTTGACCT 59.969 61.111 9.73 0.00 0.00 3.85
375 376 1.598130 GTGCGCTGGAGTTGACCTT 60.598 57.895 9.73 0.00 0.00 3.50
376 377 0.320421 GTGCGCTGGAGTTGACCTTA 60.320 55.000 9.73 0.00 0.00 2.69
377 378 0.320421 TGCGCTGGAGTTGACCTTAC 60.320 55.000 9.73 0.00 0.00 2.34
378 379 0.037232 GCGCTGGAGTTGACCTTACT 60.037 55.000 0.00 0.00 0.00 2.24
433 435 4.265893 TCAAGCAGTCTACTCTACTGAGG 58.734 47.826 7.39 0.00 45.89 3.86
443 445 0.339859 TCTACTGAGGGGCCATCACT 59.660 55.000 18.36 11.22 0.00 3.41
455 457 3.019564 GGCCATCACTGCTGTTTTCTAT 58.980 45.455 0.00 0.00 0.00 1.98
460 462 4.488126 TCACTGCTGTTTTCTATGCAAC 57.512 40.909 0.00 0.00 34.90 4.17
474 476 1.305219 TGCAACGGAGCACAATAGCC 61.305 55.000 0.00 0.00 40.11 3.93
480 482 1.287425 GGAGCACAATAGCCACGTAC 58.713 55.000 0.00 0.00 34.23 3.67
567 569 2.108976 CGGCGCCACCATCATACT 59.891 61.111 28.98 0.00 39.03 2.12
699 2477 1.675310 CGGGAATCTGCACAGCCAA 60.675 57.895 0.00 0.00 0.00 4.52
700 2478 1.651240 CGGGAATCTGCACAGCCAAG 61.651 60.000 0.00 0.00 0.00 3.61
701 2479 1.509923 GGAATCTGCACAGCCAAGC 59.490 57.895 0.00 0.00 0.00 4.01
702 2480 1.509923 GAATCTGCACAGCCAAGCC 59.490 57.895 0.00 0.00 0.00 4.35
703 2481 1.228644 AATCTGCACAGCCAAGCCA 60.229 52.632 0.00 0.00 0.00 4.75
704 2482 0.828762 AATCTGCACAGCCAAGCCAA 60.829 50.000 0.00 0.00 0.00 4.52
920 2703 0.475632 TGCCCTTCCCCGGATCATAT 60.476 55.000 0.73 0.00 0.00 1.78
929 2761 2.500098 CCCCGGATCATATAACCATCGT 59.500 50.000 0.73 0.00 0.00 3.73
949 2781 3.264866 GAAGTCGCACGAGTCGGGT 62.265 63.158 17.55 0.00 30.42 5.28
974 2806 3.572584 GACCACGCCTATAAATACGAGG 58.427 50.000 0.00 0.00 41.26 4.63
984 2816 0.178068 AAATACGAGGCATGAGCGGT 59.822 50.000 0.00 0.00 43.41 5.68
985 2817 0.530650 AATACGAGGCATGAGCGGTG 60.531 55.000 0.00 0.00 43.41 4.94
986 2818 1.676678 ATACGAGGCATGAGCGGTGT 61.677 55.000 0.00 0.00 43.41 4.16
987 2819 1.884075 TACGAGGCATGAGCGGTGTT 61.884 55.000 0.00 0.00 43.41 3.32
988 2820 2.743752 CGAGGCATGAGCGGTGTTG 61.744 63.158 0.00 0.00 43.41 3.33
1026 2862 0.740149 CAGCACCAGTCACAAGCAAA 59.260 50.000 0.00 0.00 0.00 3.68
1076 2912 3.006940 TCTCACAGTTCGCAAGTGTTTT 58.993 40.909 6.62 0.00 42.19 2.43
1077 2913 4.185394 TCTCACAGTTCGCAAGTGTTTTA 58.815 39.130 6.62 0.00 42.19 1.52
1084 2920 5.399301 CAGTTCGCAAGTGTTTTATTTCCAG 59.601 40.000 0.00 0.00 39.48 3.86
1085 2921 4.497473 TCGCAAGTGTTTTATTTCCAGG 57.503 40.909 0.00 0.00 39.48 4.45
1101 2937 1.228367 AGGGGTGCAGTTTCAGCAG 60.228 57.895 0.00 0.00 43.63 4.24
1941 3786 3.465403 CCTGCTCCTCGACCCCAG 61.465 72.222 0.00 0.00 0.00 4.45
2070 3915 2.202878 CATCCGGGCACGTACAGG 60.203 66.667 7.97 0.00 38.78 4.00
2160 4005 4.819630 TCGTTTATATTGGCATCTGTTCCC 59.180 41.667 0.00 0.00 0.00 3.97
2162 4007 4.431416 TTATATTGGCATCTGTTCCCGT 57.569 40.909 0.00 0.00 0.00 5.28
2222 4075 3.071479 GCGAATCAACCTGTGGTTTAGA 58.929 45.455 0.00 0.00 44.33 2.10
2229 4082 1.978580 ACCTGTGGTTTAGAGGGACAG 59.021 52.381 0.00 0.00 44.05 3.51
2232 4085 1.697432 TGTGGTTTAGAGGGACAGTGG 59.303 52.381 0.00 0.00 0.00 4.00
2236 4089 4.019591 GTGGTTTAGAGGGACAGTGGTATT 60.020 45.833 0.00 0.00 0.00 1.89
2238 4091 4.383880 GGTTTAGAGGGACAGTGGTATTCC 60.384 50.000 0.00 0.00 0.00 3.01
2242 4095 3.272551 AGAGGGACAGTGGTATTCCTAGT 59.727 47.826 0.00 0.00 34.23 2.57
2243 4096 4.031611 GAGGGACAGTGGTATTCCTAGTT 58.968 47.826 0.00 0.00 34.23 2.24
2249 4102 4.223032 ACAGTGGTATTCCTAGTTCACCAG 59.777 45.833 0.00 0.00 39.85 4.00
2251 4104 4.223032 AGTGGTATTCCTAGTTCACCAGTG 59.777 45.833 8.71 0.00 40.57 3.66
2254 4107 5.176592 GGTATTCCTAGTTCACCAGTGTTC 58.823 45.833 0.00 0.00 0.00 3.18
2260 4113 2.919228 AGTTCACCAGTGTTCAAGTCC 58.081 47.619 0.00 0.00 0.00 3.85
2263 4116 1.837439 TCACCAGTGTTCAAGTCCTGT 59.163 47.619 0.00 0.00 0.00 4.00
2271 4124 1.221466 TTCAAGTCCTGTTGCTCGCG 61.221 55.000 0.00 0.00 0.00 5.87
2278 4131 1.730064 TCCTGTTGCTCGCGTTATTTC 59.270 47.619 5.77 0.00 0.00 2.17
2281 4134 1.463056 TGTTGCTCGCGTTATTTCTGG 59.537 47.619 5.77 0.00 0.00 3.86
2290 4143 6.357240 GCTCGCGTTATTTCTGGATTTATTTC 59.643 38.462 5.77 0.00 0.00 2.17
2292 4145 7.753659 TCGCGTTATTTCTGGATTTATTTCAA 58.246 30.769 5.77 0.00 0.00 2.69
2308 4161 1.009078 TCAAGATTTCTGGCGATGCG 58.991 50.000 0.00 0.00 0.00 4.73
2309 4162 0.729116 CAAGATTTCTGGCGATGCGT 59.271 50.000 0.00 0.00 0.00 5.24
2326 4179 1.797025 CGTTTTCAGTGGGAGGAGAC 58.203 55.000 0.00 0.00 0.00 3.36
2327 4180 1.070134 CGTTTTCAGTGGGAGGAGACA 59.930 52.381 0.00 0.00 0.00 3.41
2328 4181 2.772287 GTTTTCAGTGGGAGGAGACAG 58.228 52.381 0.00 0.00 0.00 3.51
2330 4183 2.103153 TTCAGTGGGAGGAGACAGTT 57.897 50.000 0.00 0.00 0.00 3.16
2333 4186 2.368875 TCAGTGGGAGGAGACAGTTTTC 59.631 50.000 0.00 0.00 0.00 2.29
2334 4187 1.344763 AGTGGGAGGAGACAGTTTTCG 59.655 52.381 0.00 0.00 0.00 3.46
2335 4188 1.070289 GTGGGAGGAGACAGTTTTCGT 59.930 52.381 0.00 0.00 0.00 3.85
2336 4189 1.343465 TGGGAGGAGACAGTTTTCGTC 59.657 52.381 0.00 0.00 0.00 4.20
2337 4190 1.669211 GGGAGGAGACAGTTTTCGTCG 60.669 57.143 0.00 0.00 38.46 5.12
2338 4191 1.268899 GGAGGAGACAGTTTTCGTCGA 59.731 52.381 0.00 0.00 38.46 4.20
2339 4192 2.317684 GAGGAGACAGTTTTCGTCGAC 58.682 52.381 5.18 5.18 38.46 4.20
2361 4214 2.735857 GGCGCGTACGGTGACTTT 60.736 61.111 18.39 0.00 40.57 2.66
2362 4215 1.444212 GGCGCGTACGGTGACTTTA 60.444 57.895 18.39 0.00 40.57 1.85
2373 4226 7.514747 GCGTACGGTGACTTTATAAATCTCAAG 60.515 40.741 18.39 4.09 0.00 3.02
2392 4245 0.664767 GATGATACGCCGGCTCAGTC 60.665 60.000 26.68 16.87 0.00 3.51
2393 4246 2.353607 GATACGCCGGCTCAGTCG 60.354 66.667 26.68 10.34 0.00 4.18
2410 4263 2.031245 AGTCGCTCGAAGATGCTCATAG 60.031 50.000 0.00 0.00 33.89 2.23
2411 4264 1.268079 TCGCTCGAAGATGCTCATAGG 59.732 52.381 0.00 0.00 33.89 2.57
2412 4265 1.668337 CGCTCGAAGATGCTCATAGGG 60.668 57.143 0.00 0.00 33.89 3.53
2415 4268 1.964223 TCGAAGATGCTCATAGGGGTC 59.036 52.381 0.00 0.00 0.00 4.46
2430 4283 3.636043 GTCGGGTGTGCGTGTGTG 61.636 66.667 0.00 0.00 0.00 3.82
2435 4288 2.647481 GTGTGCGTGTGTGCGTTG 60.647 61.111 0.00 0.00 37.81 4.10
2437 4290 2.350760 GTGCGTGTGTGCGTTGAC 60.351 61.111 0.00 0.00 37.81 3.18
2442 4296 1.701545 CGTGTGTGCGTTGACAAGGT 61.702 55.000 9.46 0.00 0.00 3.50
2465 4319 6.201997 GGTTGAATGTATGCACGTATGTATGA 59.798 38.462 0.00 0.00 32.77 2.15
2469 4323 2.793278 ATGCACGTATGTATGAGCGA 57.207 45.000 0.00 0.00 32.51 4.93
2474 4328 2.794350 CACGTATGTATGAGCGATTGCA 59.206 45.455 7.90 0.00 46.23 4.08
2534 4393 1.300853 CCTTTTTGGGCGTGGCTTG 60.301 57.895 0.00 0.00 0.00 4.01
2558 4417 1.748950 TTGAGCCAATATTCAGCGCA 58.251 45.000 11.47 8.73 34.42 6.09
2562 4421 1.009675 CCAATATTCAGCGCACGGC 60.010 57.895 11.47 0.00 44.05 5.68
2572 4431 3.031660 GCGCACGGCTATATAGGTC 57.968 57.895 11.72 0.00 39.11 3.85
2573 4432 0.797249 GCGCACGGCTATATAGGTCG 60.797 60.000 11.72 8.01 39.11 4.79
2575 4434 0.526662 GCACGGCTATATAGGTCGCT 59.473 55.000 11.72 0.00 35.00 4.93
2577 4436 2.163010 GCACGGCTATATAGGTCGCTTA 59.837 50.000 11.72 0.00 35.00 3.09
2578 4437 3.181489 GCACGGCTATATAGGTCGCTTAT 60.181 47.826 11.72 0.00 35.00 1.73
2579 4438 4.677250 GCACGGCTATATAGGTCGCTTATT 60.677 45.833 11.72 0.00 35.00 1.40
2580 4439 4.798907 CACGGCTATATAGGTCGCTTATTG 59.201 45.833 11.72 0.00 35.00 1.90
2581 4440 3.797256 CGGCTATATAGGTCGCTTATTGC 59.203 47.826 11.72 0.00 38.57 3.56
2608 4467 1.152312 CCTACACGGGCCCTCCTAT 60.152 63.158 22.43 2.95 0.00 2.57
2616 4475 4.321966 GCCCTCCTATCTGCCGCC 62.322 72.222 0.00 0.00 0.00 6.13
2617 4476 3.996124 CCCTCCTATCTGCCGCCG 61.996 72.222 0.00 0.00 0.00 6.46
2618 4477 2.912542 CCTCCTATCTGCCGCCGA 60.913 66.667 0.00 0.00 0.00 5.54
2619 4478 2.498941 CCTCCTATCTGCCGCCGAA 61.499 63.158 0.00 0.00 0.00 4.30
2620 4479 1.300233 CTCCTATCTGCCGCCGAAC 60.300 63.158 0.00 0.00 0.00 3.95
2621 4480 1.739338 CTCCTATCTGCCGCCGAACT 61.739 60.000 0.00 0.00 0.00 3.01
2622 4481 1.300233 CCTATCTGCCGCCGAACTC 60.300 63.158 0.00 0.00 0.00 3.01
2623 4482 1.437573 CTATCTGCCGCCGAACTCA 59.562 57.895 0.00 0.00 0.00 3.41
2625 4484 1.320344 TATCTGCCGCCGAACTCACT 61.320 55.000 0.00 0.00 0.00 3.41
2628 4487 0.669318 CTGCCGCCGAACTCACTAAA 60.669 55.000 0.00 0.00 0.00 1.85
2630 4489 0.869730 GCCGCCGAACTCACTAAAAA 59.130 50.000 0.00 0.00 0.00 1.94
2631 4490 1.467342 GCCGCCGAACTCACTAAAAAT 59.533 47.619 0.00 0.00 0.00 1.82
2633 4492 3.311596 GCCGCCGAACTCACTAAAAATAT 59.688 43.478 0.00 0.00 0.00 1.28
2634 4493 4.201881 GCCGCCGAACTCACTAAAAATATT 60.202 41.667 0.00 0.00 0.00 1.28
2635 4494 5.675323 GCCGCCGAACTCACTAAAAATATTT 60.675 40.000 0.00 0.00 0.00 1.40
2636 4495 6.319399 CCGCCGAACTCACTAAAAATATTTT 58.681 36.000 7.64 7.64 0.00 1.82
2637 4496 7.465989 CCGCCGAACTCACTAAAAATATTTTA 58.534 34.615 13.68 2.68 0.00 1.52
2638 4497 7.964011 CCGCCGAACTCACTAAAAATATTTTAA 59.036 33.333 13.68 0.00 0.00 1.52
2639 4498 9.332301 CGCCGAACTCACTAAAAATATTTTAAA 57.668 29.630 13.68 5.04 0.00 1.52
2663 4522 9.974980 AAAAATCAACGAACATTTTAGGTACAT 57.025 25.926 0.00 0.00 32.22 2.29
2664 4523 8.964420 AAATCAACGAACATTTTAGGTACATG 57.036 30.769 0.00 0.00 0.00 3.21
2665 4524 6.489127 TCAACGAACATTTTAGGTACATGG 57.511 37.500 0.00 0.00 0.00 3.66
2666 4525 6.231951 TCAACGAACATTTTAGGTACATGGA 58.768 36.000 0.00 0.00 0.00 3.41
2667 4526 6.148150 TCAACGAACATTTTAGGTACATGGAC 59.852 38.462 0.00 0.00 0.00 4.02
2668 4527 5.553123 ACGAACATTTTAGGTACATGGACA 58.447 37.500 10.99 0.00 0.00 4.02
2669 4528 5.410439 ACGAACATTTTAGGTACATGGACAC 59.590 40.000 10.99 0.00 0.00 3.67
2670 4529 5.410132 CGAACATTTTAGGTACATGGACACA 59.590 40.000 10.99 0.00 0.00 3.72
2671 4530 6.093495 CGAACATTTTAGGTACATGGACACAT 59.907 38.462 10.99 0.00 37.99 3.21
2672 4531 7.361713 CGAACATTTTAGGTACATGGACACATT 60.362 37.037 10.99 0.00 34.35 2.71
2673 4532 7.775053 ACATTTTAGGTACATGGACACATTT 57.225 32.000 10.99 0.00 34.35 2.32
2674 4533 8.189119 ACATTTTAGGTACATGGACACATTTT 57.811 30.769 10.99 0.00 34.35 1.82
2675 4534 9.303116 ACATTTTAGGTACATGGACACATTTTA 57.697 29.630 10.99 0.00 34.35 1.52
2678 4537 9.747898 TTTTAGGTACATGGACACATTTTATCT 57.252 29.630 10.99 0.00 34.35 1.98
2679 4538 8.958119 TTAGGTACATGGACACATTTTATCTC 57.042 34.615 10.99 0.00 34.35 2.75
2680 4539 6.957631 AGGTACATGGACACATTTTATCTCA 58.042 36.000 10.99 0.00 34.35 3.27
2681 4540 7.402054 AGGTACATGGACACATTTTATCTCAA 58.598 34.615 10.99 0.00 34.35 3.02
2682 4541 8.055181 AGGTACATGGACACATTTTATCTCAAT 58.945 33.333 10.99 0.00 34.35 2.57
2683 4542 9.337396 GGTACATGGACACATTTTATCTCAATA 57.663 33.333 10.99 0.00 34.35 1.90
2689 4548 9.778741 TGGACACATTTTATCTCAATATAGGTC 57.221 33.333 0.00 0.00 0.00 3.85
2690 4549 9.778741 GGACACATTTTATCTCAATATAGGTCA 57.221 33.333 0.00 0.00 0.00 4.02
2699 4558 7.918536 ATCTCAATATAGGTCAATGATGCAC 57.081 36.000 0.00 0.00 0.00 4.57
2700 4559 6.829849 TCTCAATATAGGTCAATGATGCACA 58.170 36.000 0.00 0.00 0.00 4.57
2701 4560 7.455891 TCTCAATATAGGTCAATGATGCACAT 58.544 34.615 0.00 0.00 41.45 3.21
2702 4561 8.596293 TCTCAATATAGGTCAATGATGCACATA 58.404 33.333 0.00 0.00 38.38 2.29
2703 4562 9.392259 CTCAATATAGGTCAATGATGCACATAT 57.608 33.333 0.00 0.00 38.38 1.78
2733 4592 8.856153 TTTACAAGATACTTAAGGCATGAACA 57.144 30.769 7.53 0.00 0.00 3.18
2734 4593 9.461312 TTTACAAGATACTTAAGGCATGAACAT 57.539 29.630 7.53 0.00 0.00 2.71
2737 4596 9.632638 ACAAGATACTTAAGGCATGAACATATT 57.367 29.630 7.53 0.00 0.00 1.28
2748 4607 9.480053 AAGGCATGAACATATTTTTATATGCAC 57.520 29.630 15.24 8.90 40.89 4.57
2749 4608 8.640651 AGGCATGAACATATTTTTATATGCACA 58.359 29.630 15.24 6.31 40.89 4.57
2750 4609 9.258826 GGCATGAACATATTTTTATATGCACAA 57.741 29.630 15.24 0.00 40.89 3.33
2764 4623 9.979578 TTTATATGCACAAACATCTTTTTCTGT 57.020 25.926 0.00 0.00 0.00 3.41
2799 4658 0.874390 TGAGTTTGCTCCATGAACGC 59.126 50.000 0.00 0.00 40.95 4.84
2803 4662 0.310543 TTTGCTCCATGAACGCACAC 59.689 50.000 0.00 0.00 32.71 3.82
2808 4667 1.009108 CCATGAACGCACACGCAAA 60.009 52.632 0.00 0.00 45.53 3.68
2840 4699 4.641645 TGCCCAACAGCAGGACCG 62.642 66.667 0.00 0.00 38.00 4.79
2859 4718 1.610102 CGCCCCATGCAAAATTCCAAA 60.610 47.619 0.00 0.00 41.33 3.28
2860 4719 2.512705 GCCCCATGCAAAATTCCAAAA 58.487 42.857 0.00 0.00 40.77 2.44
2868 4727 7.040548 CCCATGCAAAATTCCAAAAATTAGTGT 60.041 33.333 0.00 0.00 0.00 3.55
2870 4729 9.384682 CATGCAAAATTCCAAAAATTAGTGTTC 57.615 29.630 0.00 0.00 0.00 3.18
2877 4736 3.989817 CCAAAAATTAGTGTTCTGGCTGC 59.010 43.478 0.00 0.00 0.00 5.25
2878 4737 3.559238 AAAATTAGTGTTCTGGCTGCG 57.441 42.857 0.00 0.00 0.00 5.18
2879 4738 2.472695 AATTAGTGTTCTGGCTGCGA 57.527 45.000 0.00 0.00 0.00 5.10
2883 4742 1.300931 GTGTTCTGGCTGCGAGTCA 60.301 57.895 11.47 9.30 0.00 3.41
2886 4745 0.514691 GTTCTGGCTGCGAGTCAAAG 59.485 55.000 11.47 0.00 0.00 2.77
2909 4768 5.964477 AGACAATACCTAATTCCCTCAGACA 59.036 40.000 0.00 0.00 0.00 3.41
2912 4771 5.878406 ATACCTAATTCCCTCAGACACAG 57.122 43.478 0.00 0.00 0.00 3.66
2924 4783 0.253044 AGACACAGCGGCATACCAAT 59.747 50.000 1.45 0.00 34.57 3.16
2942 4801 1.340088 ATGCACCAACCAAGCATTCA 58.660 45.000 0.00 0.00 45.98 2.57
2944 4803 1.273048 TGCACCAACCAAGCATTCATC 59.727 47.619 0.00 0.00 32.55 2.92
2946 4805 2.673043 GCACCAACCAAGCATTCATCAG 60.673 50.000 0.00 0.00 0.00 2.90
2950 4809 4.832266 ACCAACCAAGCATTCATCAGTAAA 59.168 37.500 0.00 0.00 0.00 2.01
2953 4812 6.320171 CAACCAAGCATTCATCAGTAAAGAG 58.680 40.000 0.00 0.00 0.00 2.85
2954 4813 5.564550 ACCAAGCATTCATCAGTAAAGAGT 58.435 37.500 0.00 0.00 0.00 3.24
2956 4815 6.595716 ACCAAGCATTCATCAGTAAAGAGTAC 59.404 38.462 0.00 0.00 0.00 2.73
2957 4816 6.820656 CCAAGCATTCATCAGTAAAGAGTACT 59.179 38.462 0.00 0.00 0.00 2.73
2958 4817 7.201591 CCAAGCATTCATCAGTAAAGAGTACTG 60.202 40.741 0.00 7.10 44.56 2.74
2960 4819 5.276584 GCATTCATCAGTAAAGAGTACTGCG 60.277 44.000 0.00 3.43 43.30 5.18
2979 4838 5.244626 ACTGCGGTACTTTAAGAACTAGGAA 59.755 40.000 0.00 0.00 0.00 3.36
2980 4839 6.070938 ACTGCGGTACTTTAAGAACTAGGAAT 60.071 38.462 0.00 0.00 0.00 3.01
2982 4841 7.486647 TGCGGTACTTTAAGAACTAGGAATAG 58.513 38.462 0.00 0.00 0.00 1.73
2983 4842 7.340232 TGCGGTACTTTAAGAACTAGGAATAGA 59.660 37.037 0.00 0.00 0.00 1.98
2984 4843 8.358895 GCGGTACTTTAAGAACTAGGAATAGAT 58.641 37.037 0.00 0.00 0.00 1.98
3027 4886 7.875316 TGAAATTTCAAACGTGTTTTCTTGA 57.125 28.000 18.45 0.00 33.55 3.02
3030 4889 8.927315 AAATTTCAAACGTGTTTTCTTGAAAC 57.073 26.923 20.05 0.00 45.48 2.78
3068 4936 5.050159 GGAACATTTTTCAACATTGTGAGCC 60.050 40.000 0.00 0.00 0.00 4.70
3081 4949 6.347696 ACATTGTGAGCCAAATTTTGAAAGA 58.652 32.000 10.72 0.00 36.44 2.52
3115 4983 7.784633 TCCTGAAAAATTGGAACACATTTTC 57.215 32.000 0.00 0.00 45.47 2.29
3129 4997 7.388500 GGAACACATTTTCAAATCATGGACAAT 59.612 33.333 0.00 0.00 0.00 2.71
3166 5034 8.835467 TGAACTTTCAAGAAAATACGAACAAG 57.165 30.769 0.00 0.00 33.55 3.16
3167 5035 7.431084 TGAACTTTCAAGAAAATACGAACAAGC 59.569 33.333 0.00 0.00 33.55 4.01
3191 5059 9.202273 AGCTATAAAATTTGCGAACAATTTTCA 57.798 25.926 12.79 5.46 38.01 2.69
3192 5060 9.464248 GCTATAAAATTTGCGAACAATTTTCAG 57.536 29.630 12.79 12.26 38.01 3.02
3193 5061 9.956797 CTATAAAATTTGCGAACAATTTTCAGG 57.043 29.630 12.79 4.75 38.01 3.86
3194 5062 6.917217 AAAATTTGCGAACAATTTTCAGGA 57.083 29.167 0.00 0.00 38.01 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.837213 ATTCGAAAGTTCATGCCAGTG 57.163 42.857 0.00 0.00 0.00 3.66
6 7 6.324819 CAAATATTCGAAAGTTCATGCCAGT 58.675 36.000 0.00 0.00 0.00 4.00
7 8 5.230726 GCAAATATTCGAAAGTTCATGCCAG 59.769 40.000 0.00 0.00 0.00 4.85
8 9 5.101628 GCAAATATTCGAAAGTTCATGCCA 58.898 37.500 0.00 0.00 0.00 4.92
9 10 5.101628 TGCAAATATTCGAAAGTTCATGCC 58.898 37.500 0.00 0.00 0.00 4.40
10 11 6.817270 ATGCAAATATTCGAAAGTTCATGC 57.183 33.333 0.00 9.24 0.00 4.06
11 12 8.862074 TCAAATGCAAATATTCGAAAGTTCATG 58.138 29.630 0.00 0.00 0.00 3.07
12 13 8.984891 TCAAATGCAAATATTCGAAAGTTCAT 57.015 26.923 0.00 0.00 0.00 2.57
13 14 8.809159 TTCAAATGCAAATATTCGAAAGTTCA 57.191 26.923 0.00 0.00 0.00 3.18
20 21 8.871862 CCTCATTTTTCAAATGCAAATATTCGA 58.128 29.630 0.00 0.00 0.00 3.71
21 22 7.637132 GCCTCATTTTTCAAATGCAAATATTCG 59.363 33.333 0.00 0.00 0.00 3.34
22 23 7.637132 CGCCTCATTTTTCAAATGCAAATATTC 59.363 33.333 0.00 0.00 0.00 1.75
23 24 7.414319 CCGCCTCATTTTTCAAATGCAAATATT 60.414 33.333 0.00 0.00 0.00 1.28
24 25 6.037391 CCGCCTCATTTTTCAAATGCAAATAT 59.963 34.615 0.00 0.00 0.00 1.28
25 26 5.350914 CCGCCTCATTTTTCAAATGCAAATA 59.649 36.000 0.00 0.00 0.00 1.40
26 27 4.154556 CCGCCTCATTTTTCAAATGCAAAT 59.845 37.500 0.00 0.00 0.00 2.32
27 28 3.497640 CCGCCTCATTTTTCAAATGCAAA 59.502 39.130 0.00 0.00 0.00 3.68
28 29 3.065655 CCGCCTCATTTTTCAAATGCAA 58.934 40.909 0.00 0.00 0.00 4.08
29 30 2.298446 TCCGCCTCATTTTTCAAATGCA 59.702 40.909 4.59 0.00 0.00 3.96
30 31 2.958213 TCCGCCTCATTTTTCAAATGC 58.042 42.857 4.59 0.00 0.00 3.56
31 32 5.067674 TCCTATCCGCCTCATTTTTCAAATG 59.932 40.000 3.23 3.23 0.00 2.32
32 33 5.200483 TCCTATCCGCCTCATTTTTCAAAT 58.800 37.500 0.00 0.00 0.00 2.32
33 34 4.594970 TCCTATCCGCCTCATTTTTCAAA 58.405 39.130 0.00 0.00 0.00 2.69
34 35 4.229304 TCCTATCCGCCTCATTTTTCAA 57.771 40.909 0.00 0.00 0.00 2.69
35 36 3.924114 TCCTATCCGCCTCATTTTTCA 57.076 42.857 0.00 0.00 0.00 2.69
36 37 3.057946 GCATCCTATCCGCCTCATTTTTC 60.058 47.826 0.00 0.00 0.00 2.29
37 38 2.887152 GCATCCTATCCGCCTCATTTTT 59.113 45.455 0.00 0.00 0.00 1.94
38 39 2.508526 GCATCCTATCCGCCTCATTTT 58.491 47.619 0.00 0.00 0.00 1.82
39 40 1.609061 CGCATCCTATCCGCCTCATTT 60.609 52.381 0.00 0.00 0.00 2.32
40 41 0.036952 CGCATCCTATCCGCCTCATT 60.037 55.000 0.00 0.00 0.00 2.57
41 42 1.593787 CGCATCCTATCCGCCTCAT 59.406 57.895 0.00 0.00 0.00 2.90
42 43 2.574018 CCGCATCCTATCCGCCTCA 61.574 63.158 0.00 0.00 0.00 3.86
43 44 2.262915 CCGCATCCTATCCGCCTC 59.737 66.667 0.00 0.00 0.00 4.70
44 45 4.008933 GCCGCATCCTATCCGCCT 62.009 66.667 0.00 0.00 0.00 5.52
46 47 3.825160 TTGGCCGCATCCTATCCGC 62.825 63.158 0.00 0.00 0.00 5.54
47 48 0.606401 ATTTGGCCGCATCCTATCCG 60.606 55.000 0.00 0.00 0.00 4.18
48 49 0.883833 CATTTGGCCGCATCCTATCC 59.116 55.000 0.00 0.00 0.00 2.59
49 50 1.896220 TCATTTGGCCGCATCCTATC 58.104 50.000 0.00 0.00 0.00 2.08
50 51 2.165167 CATCATTTGGCCGCATCCTAT 58.835 47.619 0.00 0.00 0.00 2.57
51 52 1.608055 CATCATTTGGCCGCATCCTA 58.392 50.000 0.00 0.00 0.00 2.94
52 53 1.111116 CCATCATTTGGCCGCATCCT 61.111 55.000 0.00 0.00 39.09 3.24
53 54 1.108727 TCCATCATTTGGCCGCATCC 61.109 55.000 0.00 0.00 46.01 3.51
54 55 0.313043 CTCCATCATTTGGCCGCATC 59.687 55.000 0.00 0.00 46.01 3.91
55 56 0.396139 ACTCCATCATTTGGCCGCAT 60.396 50.000 0.00 0.00 46.01 4.73
56 57 1.001020 ACTCCATCATTTGGCCGCA 60.001 52.632 0.00 0.00 46.01 5.69
57 58 1.434696 CACTCCATCATTTGGCCGC 59.565 57.895 0.00 0.00 46.01 6.53
58 59 2.109431 CCACTCCATCATTTGGCCG 58.891 57.895 0.00 0.00 46.01 6.13
62 63 1.434696 GCCGCCACTCCATCATTTG 59.565 57.895 0.00 0.00 0.00 2.32
63 64 2.114670 CGCCGCCACTCCATCATTT 61.115 57.895 0.00 0.00 0.00 2.32
64 65 2.514592 CGCCGCCACTCCATCATT 60.515 61.111 0.00 0.00 0.00 2.57
67 68 4.221422 TAGCGCCGCCACTCCATC 62.221 66.667 4.98 0.00 0.00 3.51
68 69 4.227134 CTAGCGCCGCCACTCCAT 62.227 66.667 4.98 0.00 0.00 3.41
73 74 2.450479 AATATCCCTAGCGCCGCCAC 62.450 60.000 4.98 0.00 0.00 5.01
74 75 2.167398 GAATATCCCTAGCGCCGCCA 62.167 60.000 4.98 0.00 0.00 5.69
75 76 1.448013 GAATATCCCTAGCGCCGCC 60.448 63.158 4.98 0.00 0.00 6.13
76 77 0.037232 AAGAATATCCCTAGCGCCGC 60.037 55.000 2.29 0.00 0.00 6.53
77 78 1.673033 CCAAGAATATCCCTAGCGCCG 60.673 57.143 2.29 0.00 0.00 6.46
78 79 1.348036 ACCAAGAATATCCCTAGCGCC 59.652 52.381 2.29 0.00 0.00 6.53
79 80 2.841442 ACCAAGAATATCCCTAGCGC 57.159 50.000 0.00 0.00 0.00 5.92
80 81 4.608948 AGAACCAAGAATATCCCTAGCG 57.391 45.455 0.00 0.00 0.00 4.26
81 82 5.930135 TGAAGAACCAAGAATATCCCTAGC 58.070 41.667 0.00 0.00 0.00 3.42
82 83 7.443575 CACATGAAGAACCAAGAATATCCCTAG 59.556 40.741 0.00 0.00 0.00 3.02
83 84 7.127186 TCACATGAAGAACCAAGAATATCCCTA 59.873 37.037 0.00 0.00 0.00 3.53
84 85 6.069440 TCACATGAAGAACCAAGAATATCCCT 60.069 38.462 0.00 0.00 0.00 4.20
85 86 6.122277 TCACATGAAGAACCAAGAATATCCC 58.878 40.000 0.00 0.00 0.00 3.85
86 87 6.825721 ACTCACATGAAGAACCAAGAATATCC 59.174 38.462 0.00 0.00 0.00 2.59
87 88 7.856145 ACTCACATGAAGAACCAAGAATATC 57.144 36.000 0.00 0.00 0.00 1.63
88 89 7.770897 GGTACTCACATGAAGAACCAAGAATAT 59.229 37.037 0.00 0.00 0.00 1.28
89 90 7.103641 GGTACTCACATGAAGAACCAAGAATA 58.896 38.462 0.00 0.00 0.00 1.75
90 91 5.940470 GGTACTCACATGAAGAACCAAGAAT 59.060 40.000 0.00 0.00 0.00 2.40
91 92 5.305585 GGTACTCACATGAAGAACCAAGAA 58.694 41.667 0.00 0.00 0.00 2.52
92 93 4.262894 GGGTACTCACATGAAGAACCAAGA 60.263 45.833 0.00 0.00 0.00 3.02
93 94 4.003648 GGGTACTCACATGAAGAACCAAG 58.996 47.826 0.00 0.00 0.00 3.61
94 95 3.392947 TGGGTACTCACATGAAGAACCAA 59.607 43.478 0.00 0.00 0.00 3.67
95 96 2.976185 TGGGTACTCACATGAAGAACCA 59.024 45.455 0.00 5.48 0.00 3.67
96 97 3.695830 TGGGTACTCACATGAAGAACC 57.304 47.619 0.00 2.70 0.00 3.62
97 98 7.865706 AATTATGGGTACTCACATGAAGAAC 57.134 36.000 0.00 0.00 38.27 3.01
98 99 8.877864 AAAATTATGGGTACTCACATGAAGAA 57.122 30.769 0.00 0.00 38.27 2.52
99 100 8.877864 AAAAATTATGGGTACTCACATGAAGA 57.122 30.769 0.00 0.00 38.27 2.87
101 102 9.521841 TGTAAAAATTATGGGTACTCACATGAA 57.478 29.630 0.00 0.00 38.27 2.57
102 103 9.521841 TTGTAAAAATTATGGGTACTCACATGA 57.478 29.630 0.00 0.00 38.27 3.07
105 106 9.968870 GTTTTGTAAAAATTATGGGTACTCACA 57.031 29.630 0.00 0.00 0.00 3.58
106 107 9.968870 TGTTTTGTAAAAATTATGGGTACTCAC 57.031 29.630 0.00 0.00 0.00 3.51
112 113 9.674068 AACACTTGTTTTGTAAAAATTATGGGT 57.326 25.926 0.00 0.00 33.93 4.51
113 114 9.928236 CAACACTTGTTTTGTAAAAATTATGGG 57.072 29.630 0.00 0.00 35.83 4.00
120 121 9.884465 CCAAAATCAACACTTGTTTTGTAAAAA 57.116 25.926 14.56 0.00 38.49 1.94
121 122 8.017946 GCCAAAATCAACACTTGTTTTGTAAAA 58.982 29.630 14.56 0.00 38.49 1.52
122 123 7.173218 TGCCAAAATCAACACTTGTTTTGTAAA 59.827 29.630 14.56 0.00 38.49 2.01
123 124 6.650807 TGCCAAAATCAACACTTGTTTTGTAA 59.349 30.769 14.56 6.43 38.49 2.41
124 125 6.166279 TGCCAAAATCAACACTTGTTTTGTA 58.834 32.000 14.56 7.04 38.49 2.41
125 126 4.999950 TGCCAAAATCAACACTTGTTTTGT 59.000 33.333 14.56 0.00 38.49 2.83
126 127 5.542616 TGCCAAAATCAACACTTGTTTTG 57.457 34.783 0.00 0.00 39.09 2.44
127 128 6.566197 TTTGCCAAAATCAACACTTGTTTT 57.434 29.167 0.00 0.00 35.83 2.43
128 129 6.016777 TGTTTTGCCAAAATCAACACTTGTTT 60.017 30.769 5.81 0.00 32.40 2.83
129 130 5.471456 TGTTTTGCCAAAATCAACACTTGTT 59.529 32.000 5.81 0.00 33.90 2.83
130 131 4.999950 TGTTTTGCCAAAATCAACACTTGT 59.000 33.333 5.81 0.00 32.22 3.16
131 132 5.542616 TGTTTTGCCAAAATCAACACTTG 57.457 34.783 5.81 0.00 32.22 3.16
132 133 6.373774 TCATTGTTTTGCCAAAATCAACACTT 59.626 30.769 5.81 0.00 37.64 3.16
133 134 5.879223 TCATTGTTTTGCCAAAATCAACACT 59.121 32.000 5.81 0.00 37.64 3.55
134 135 6.116680 TCATTGTTTTGCCAAAATCAACAC 57.883 33.333 5.81 0.00 37.64 3.32
135 136 6.939132 ATCATTGTTTTGCCAAAATCAACA 57.061 29.167 5.81 0.00 37.64 3.33
136 137 9.896263 AATTATCATTGTTTTGCCAAAATCAAC 57.104 25.926 5.81 0.00 37.64 3.18
173 174 9.064706 TGTATTCATTTTGCCAAAATCATTGTT 57.935 25.926 12.34 0.22 38.97 2.83
174 175 8.505625 GTGTATTCATTTTGCCAAAATCATTGT 58.494 29.630 12.34 1.36 38.97 2.71
175 176 8.504815 TGTGTATTCATTTTGCCAAAATCATTG 58.495 29.630 12.34 3.89 38.97 2.82
176 177 8.618702 TGTGTATTCATTTTGCCAAAATCATT 57.381 26.923 12.34 0.00 38.97 2.57
177 178 8.795842 ATGTGTATTCATTTTGCCAAAATCAT 57.204 26.923 12.34 10.04 38.97 2.45
178 179 8.618702 AATGTGTATTCATTTTGCCAAAATCA 57.381 26.923 12.34 6.55 38.97 2.57
183 184 9.593134 GGTATTAATGTGTATTCATTTTGCCAA 57.407 29.630 0.00 0.00 38.68 4.52
184 185 8.200792 GGGTATTAATGTGTATTCATTTTGCCA 58.799 33.333 0.00 0.00 38.68 4.92
185 186 7.381139 CGGGTATTAATGTGTATTCATTTTGCC 59.619 37.037 0.00 0.00 38.68 4.52
186 187 7.381139 CCGGGTATTAATGTGTATTCATTTTGC 59.619 37.037 0.00 0.00 38.68 3.68
187 188 8.410141 ACCGGGTATTAATGTGTATTCATTTTG 58.590 33.333 6.32 0.00 38.68 2.44
188 189 8.528044 ACCGGGTATTAATGTGTATTCATTTT 57.472 30.769 6.32 0.00 38.68 1.82
189 190 8.410141 CAACCGGGTATTAATGTGTATTCATTT 58.590 33.333 6.32 0.00 38.68 2.32
190 191 7.469456 GCAACCGGGTATTAATGTGTATTCATT 60.469 37.037 6.32 0.00 40.50 2.57
191 192 6.016610 GCAACCGGGTATTAATGTGTATTCAT 60.017 38.462 6.32 0.00 0.00 2.57
192 193 5.297278 GCAACCGGGTATTAATGTGTATTCA 59.703 40.000 6.32 0.00 0.00 2.57
193 194 5.297278 TGCAACCGGGTATTAATGTGTATTC 59.703 40.000 6.32 0.00 0.00 1.75
194 195 5.194432 TGCAACCGGGTATTAATGTGTATT 58.806 37.500 6.32 0.00 0.00 1.89
195 196 4.783055 TGCAACCGGGTATTAATGTGTAT 58.217 39.130 6.32 0.00 0.00 2.29
196 197 4.217836 TGCAACCGGGTATTAATGTGTA 57.782 40.909 6.32 0.00 0.00 2.90
197 198 3.074675 TGCAACCGGGTATTAATGTGT 57.925 42.857 6.32 0.00 0.00 3.72
198 199 4.442375 TTTGCAACCGGGTATTAATGTG 57.558 40.909 6.32 0.00 0.00 3.21
199 200 5.394773 GGAATTTGCAACCGGGTATTAATGT 60.395 40.000 6.32 0.00 0.00 2.71
200 201 5.047188 GGAATTTGCAACCGGGTATTAATG 58.953 41.667 6.32 0.00 0.00 1.90
201 202 4.959839 AGGAATTTGCAACCGGGTATTAAT 59.040 37.500 6.32 0.00 0.00 1.40
202 203 4.158764 CAGGAATTTGCAACCGGGTATTAA 59.841 41.667 6.32 0.00 0.00 1.40
203 204 3.697045 CAGGAATTTGCAACCGGGTATTA 59.303 43.478 6.32 0.00 0.00 0.98
204 205 2.495669 CAGGAATTTGCAACCGGGTATT 59.504 45.455 6.32 0.00 0.00 1.89
205 206 2.099405 CAGGAATTTGCAACCGGGTAT 58.901 47.619 6.32 0.00 0.00 2.73
206 207 1.074084 TCAGGAATTTGCAACCGGGTA 59.926 47.619 6.32 0.00 0.00 3.69
207 208 0.178975 TCAGGAATTTGCAACCGGGT 60.179 50.000 6.32 0.00 0.00 5.28
208 209 0.965439 TTCAGGAATTTGCAACCGGG 59.035 50.000 6.32 0.00 0.00 5.73
209 210 1.669795 GCTTCAGGAATTTGCAACCGG 60.670 52.381 0.00 0.00 0.00 5.28
210 211 1.669795 GGCTTCAGGAATTTGCAACCG 60.670 52.381 0.00 0.00 0.00 4.44
211 212 1.338105 GGGCTTCAGGAATTTGCAACC 60.338 52.381 0.00 0.00 0.00 3.77
212 213 1.344114 TGGGCTTCAGGAATTTGCAAC 59.656 47.619 0.00 0.00 0.00 4.17
213 214 1.344114 GTGGGCTTCAGGAATTTGCAA 59.656 47.619 0.00 0.00 0.00 4.08
214 215 0.968405 GTGGGCTTCAGGAATTTGCA 59.032 50.000 0.00 0.00 0.00 4.08
215 216 0.968405 TGTGGGCTTCAGGAATTTGC 59.032 50.000 0.00 0.00 0.00 3.68
216 217 2.029649 CAGTGTGGGCTTCAGGAATTTG 60.030 50.000 0.00 0.00 0.00 2.32
217 218 2.158475 TCAGTGTGGGCTTCAGGAATTT 60.158 45.455 0.00 0.00 0.00 1.82
218 219 1.425066 TCAGTGTGGGCTTCAGGAATT 59.575 47.619 0.00 0.00 0.00 2.17
219 220 1.067295 TCAGTGTGGGCTTCAGGAAT 58.933 50.000 0.00 0.00 0.00 3.01
220 221 0.843309 TTCAGTGTGGGCTTCAGGAA 59.157 50.000 0.00 0.00 0.00 3.36
221 222 0.843309 TTTCAGTGTGGGCTTCAGGA 59.157 50.000 0.00 0.00 0.00 3.86
222 223 1.242076 CTTTCAGTGTGGGCTTCAGG 58.758 55.000 0.00 0.00 0.00 3.86
223 224 1.242076 CCTTTCAGTGTGGGCTTCAG 58.758 55.000 0.00 0.00 0.00 3.02
224 225 0.178992 CCCTTTCAGTGTGGGCTTCA 60.179 55.000 5.87 0.00 33.88 3.02
225 226 0.178990 ACCCTTTCAGTGTGGGCTTC 60.179 55.000 15.15 0.00 44.56 3.86
226 227 0.468029 CACCCTTTCAGTGTGGGCTT 60.468 55.000 15.15 0.00 44.56 4.35
227 228 1.151450 CACCCTTTCAGTGTGGGCT 59.849 57.895 15.15 4.26 44.56 5.19
228 229 2.564721 GCACCCTTTCAGTGTGGGC 61.565 63.158 15.15 0.00 44.56 5.36
229 230 2.260869 CGCACCCTTTCAGTGTGGG 61.261 63.158 14.11 14.11 46.07 4.61
230 231 3.343972 CGCACCCTTTCAGTGTGG 58.656 61.111 0.00 0.00 41.08 4.17
231 232 2.908073 GCCGCACCCTTTCAGTGTG 61.908 63.158 0.00 0.00 43.70 3.82
232 233 2.594592 GCCGCACCCTTTCAGTGT 60.595 61.111 0.00 0.00 37.56 3.55
233 234 2.281761 AGCCGCACCCTTTCAGTG 60.282 61.111 0.00 0.00 38.30 3.66
234 235 2.281761 CAGCCGCACCCTTTCAGT 60.282 61.111 0.00 0.00 0.00 3.41
235 236 3.741476 GCAGCCGCACCCTTTCAG 61.741 66.667 0.00 0.00 38.36 3.02
255 256 3.660111 GGTGGTGGTGCGCTCAAC 61.660 66.667 9.73 9.04 0.00 3.18
263 264 3.859118 TTGGGATGCGGTGGTGGTG 62.859 63.158 0.00 0.00 0.00 4.17
264 265 2.648613 TTTTGGGATGCGGTGGTGGT 62.649 55.000 0.00 0.00 0.00 4.16
265 266 1.467678 TTTTTGGGATGCGGTGGTGG 61.468 55.000 0.00 0.00 0.00 4.61
266 267 2.045280 TTTTTGGGATGCGGTGGTG 58.955 52.632 0.00 0.00 0.00 4.17
267 268 4.609098 TTTTTGGGATGCGGTGGT 57.391 50.000 0.00 0.00 0.00 4.16
281 282 4.128643 TGAGGTCGTGTTCGGTTATTTTT 58.871 39.130 0.00 0.00 37.69 1.94
282 283 3.731089 TGAGGTCGTGTTCGGTTATTTT 58.269 40.909 0.00 0.00 37.69 1.82
283 284 3.389925 TGAGGTCGTGTTCGGTTATTT 57.610 42.857 0.00 0.00 37.69 1.40
284 285 3.604875 ATGAGGTCGTGTTCGGTTATT 57.395 42.857 0.00 0.00 37.69 1.40
285 286 3.259064 CAATGAGGTCGTGTTCGGTTAT 58.741 45.455 0.00 0.00 37.69 1.89
286 287 2.679450 CAATGAGGTCGTGTTCGGTTA 58.321 47.619 0.00 0.00 37.69 2.85
287 288 1.508632 CAATGAGGTCGTGTTCGGTT 58.491 50.000 0.00 0.00 37.69 4.44
288 289 0.949105 GCAATGAGGTCGTGTTCGGT 60.949 55.000 0.00 0.00 37.69 4.69
289 290 1.635663 GGCAATGAGGTCGTGTTCGG 61.636 60.000 0.00 0.00 37.69 4.30
290 291 1.635663 GGGCAATGAGGTCGTGTTCG 61.636 60.000 0.00 0.00 38.55 3.95
291 292 0.605319 TGGGCAATGAGGTCGTGTTC 60.605 55.000 0.00 0.00 0.00 3.18
292 293 0.889186 GTGGGCAATGAGGTCGTGTT 60.889 55.000 0.00 0.00 0.00 3.32
293 294 1.302511 GTGGGCAATGAGGTCGTGT 60.303 57.895 0.00 0.00 0.00 4.49
294 295 2.040544 GGTGGGCAATGAGGTCGTG 61.041 63.158 0.00 0.00 0.00 4.35
295 296 1.779061 AAGGTGGGCAATGAGGTCGT 61.779 55.000 0.00 0.00 0.00 4.34
296 297 0.251916 TAAGGTGGGCAATGAGGTCG 59.748 55.000 0.00 0.00 0.00 4.79
297 298 2.492088 GTTTAAGGTGGGCAATGAGGTC 59.508 50.000 0.00 0.00 0.00 3.85
298 299 2.525368 GTTTAAGGTGGGCAATGAGGT 58.475 47.619 0.00 0.00 0.00 3.85
299 300 1.472480 CGTTTAAGGTGGGCAATGAGG 59.528 52.381 0.00 0.00 0.00 3.86
300 301 1.472480 CCGTTTAAGGTGGGCAATGAG 59.528 52.381 0.00 0.00 0.00 2.90
301 302 1.074084 TCCGTTTAAGGTGGGCAATGA 59.926 47.619 0.00 0.00 0.00 2.57
302 303 1.201414 GTCCGTTTAAGGTGGGCAATG 59.799 52.381 0.00 0.00 0.00 2.82
303 304 1.202952 TGTCCGTTTAAGGTGGGCAAT 60.203 47.619 0.00 0.00 33.72 3.56
304 305 0.183014 TGTCCGTTTAAGGTGGGCAA 59.817 50.000 0.00 0.00 33.72 4.52
305 306 0.250553 CTGTCCGTTTAAGGTGGGCA 60.251 55.000 0.00 0.00 35.74 5.36
306 307 0.035739 TCTGTCCGTTTAAGGTGGGC 59.964 55.000 0.00 0.00 0.00 5.36
307 308 2.554370 TTCTGTCCGTTTAAGGTGGG 57.446 50.000 0.00 0.00 0.00 4.61
308 309 3.007635 GGATTCTGTCCGTTTAAGGTGG 58.992 50.000 0.00 0.00 37.23 4.61
319 320 1.078708 TTTCGCCCGGATTCTGTCC 60.079 57.895 0.73 0.00 44.10 4.02
320 321 1.693083 CGTTTCGCCCGGATTCTGTC 61.693 60.000 0.73 0.00 0.00 3.51
321 322 1.740296 CGTTTCGCCCGGATTCTGT 60.740 57.895 0.73 0.00 0.00 3.41
322 323 3.089784 CGTTTCGCCCGGATTCTG 58.910 61.111 0.73 0.00 0.00 3.02
339 340 4.754667 GACCCCAAGCGGACGTCC 62.755 72.222 25.28 25.28 0.00 4.79
352 353 4.681978 AACTCCAGCGCACGACCC 62.682 66.667 11.47 0.00 0.00 4.46
353 354 3.414700 CAACTCCAGCGCACGACC 61.415 66.667 11.47 0.00 0.00 4.79
354 355 2.355837 TCAACTCCAGCGCACGAC 60.356 61.111 11.47 0.00 0.00 4.34
355 356 2.355837 GTCAACTCCAGCGCACGA 60.356 61.111 11.47 2.67 0.00 4.35
356 357 3.414700 GGTCAACTCCAGCGCACG 61.415 66.667 11.47 0.00 0.00 5.34
357 358 0.320421 TAAGGTCAACTCCAGCGCAC 60.320 55.000 11.47 0.00 0.00 5.34
358 359 0.320421 GTAAGGTCAACTCCAGCGCA 60.320 55.000 11.47 0.00 0.00 6.09
359 360 0.037232 AGTAAGGTCAACTCCAGCGC 60.037 55.000 0.00 0.00 0.00 5.92
360 361 1.272490 TCAGTAAGGTCAACTCCAGCG 59.728 52.381 0.00 0.00 0.00 5.18
361 362 3.402628 TTCAGTAAGGTCAACTCCAGC 57.597 47.619 0.00 0.00 0.00 4.85
362 363 6.934645 TGTAAATTCAGTAAGGTCAACTCCAG 59.065 38.462 0.00 0.00 0.00 3.86
363 364 6.833041 TGTAAATTCAGTAAGGTCAACTCCA 58.167 36.000 0.00 0.00 0.00 3.86
364 365 7.626452 GCATGTAAATTCAGTAAGGTCAACTCC 60.626 40.741 0.00 0.00 0.00 3.85
365 366 7.244192 GCATGTAAATTCAGTAAGGTCAACTC 58.756 38.462 0.00 0.00 0.00 3.01
366 367 6.151144 GGCATGTAAATTCAGTAAGGTCAACT 59.849 38.462 0.00 0.00 0.00 3.16
367 368 6.322491 GGCATGTAAATTCAGTAAGGTCAAC 58.678 40.000 0.00 0.00 0.00 3.18
368 369 5.123186 CGGCATGTAAATTCAGTAAGGTCAA 59.877 40.000 0.00 0.00 0.00 3.18
369 370 4.634004 CGGCATGTAAATTCAGTAAGGTCA 59.366 41.667 0.00 0.00 0.00 4.02
370 371 4.634443 ACGGCATGTAAATTCAGTAAGGTC 59.366 41.667 0.00 0.00 0.00 3.85
371 372 4.585879 ACGGCATGTAAATTCAGTAAGGT 58.414 39.130 0.00 0.00 0.00 3.50
372 373 5.560966 AACGGCATGTAAATTCAGTAAGG 57.439 39.130 0.00 0.00 0.00 2.69
373 374 7.855904 GGATTAACGGCATGTAAATTCAGTAAG 59.144 37.037 0.00 0.00 0.00 2.34
374 375 7.201750 GGGATTAACGGCATGTAAATTCAGTAA 60.202 37.037 0.00 0.00 0.00 2.24
375 376 6.261381 GGGATTAACGGCATGTAAATTCAGTA 59.739 38.462 0.00 0.00 0.00 2.74
376 377 5.067283 GGGATTAACGGCATGTAAATTCAGT 59.933 40.000 0.00 0.00 0.00 3.41
377 378 5.507315 GGGGATTAACGGCATGTAAATTCAG 60.507 44.000 0.00 0.00 0.00 3.02
378 379 4.339814 GGGGATTAACGGCATGTAAATTCA 59.660 41.667 0.00 0.00 0.00 2.57
433 435 0.244721 GAAAACAGCAGTGATGGCCC 59.755 55.000 13.84 0.00 0.00 5.80
443 445 2.483877 CTCCGTTGCATAGAAAACAGCA 59.516 45.455 0.00 0.00 34.79 4.41
455 457 1.305219 GGCTATTGTGCTCCGTTGCA 61.305 55.000 0.00 0.00 41.05 4.08
460 462 0.179121 TACGTGGCTATTGTGCTCCG 60.179 55.000 0.00 0.00 34.27 4.63
469 471 2.842256 CGGCGGAGTACGTGGCTAT 61.842 63.158 0.00 0.00 46.52 2.97
563 565 5.791336 TCGATGAGCTTCCATGTAAGTAT 57.209 39.130 0.00 0.00 0.00 2.12
564 566 5.301805 TCATCGATGAGCTTCCATGTAAGTA 59.698 40.000 23.99 0.00 32.11 2.24
567 569 4.625028 CTCATCGATGAGCTTCCATGTAA 58.375 43.478 35.45 8.26 46.63 2.41
674 2447 2.892425 GCAGATTCCCGTCGCCTG 60.892 66.667 0.00 0.00 0.00 4.85
902 2680 1.580059 TATATGATCCGGGGAAGGGC 58.420 55.000 0.00 0.00 0.00 5.19
903 2681 2.238898 GGTTATATGATCCGGGGAAGGG 59.761 54.545 0.00 0.00 0.00 3.95
906 2689 3.196901 CGATGGTTATATGATCCGGGGAA 59.803 47.826 0.00 0.00 0.00 3.97
920 2703 0.522626 TGCGACTTCGACGATGGTTA 59.477 50.000 14.41 0.00 43.02 2.85
929 2761 2.172659 CGACTCGTGCGACTTCGA 59.827 61.111 12.71 0.00 43.02 3.71
970 2802 2.434884 AACACCGCTCATGCCTCG 60.435 61.111 0.00 0.00 35.36 4.63
974 2806 3.364441 TGGCAACACCGCTCATGC 61.364 61.111 0.00 0.00 46.17 4.06
985 2817 1.098050 GTGATGGGATGAGTGGCAAC 58.902 55.000 0.00 0.00 0.00 4.17
986 2818 0.034186 GGTGATGGGATGAGTGGCAA 60.034 55.000 0.00 0.00 0.00 4.52
987 2819 1.206811 TGGTGATGGGATGAGTGGCA 61.207 55.000 0.00 0.00 0.00 4.92
988 2820 0.749454 GTGGTGATGGGATGAGTGGC 60.749 60.000 0.00 0.00 0.00 5.01
1026 2862 1.025812 CGGTGATCGAGCTCCTACTT 58.974 55.000 18.58 0.00 42.43 2.24
1076 2912 2.109128 TGAAACTGCACCCCTGGAAATA 59.891 45.455 0.00 0.00 0.00 1.40
1077 2913 1.133199 TGAAACTGCACCCCTGGAAAT 60.133 47.619 0.00 0.00 0.00 2.17
1084 2920 2.270986 CCTGCTGAAACTGCACCCC 61.271 63.158 0.00 0.00 34.77 4.95
1085 2921 1.518903 GACCTGCTGAAACTGCACCC 61.519 60.000 0.00 0.00 34.77 4.61
1101 2937 0.814010 AATCGTAGCCATTGCCGACC 60.814 55.000 0.00 0.00 34.72 4.79
1498 3343 2.038813 TGGTCGATCTGGGCCAGA 59.961 61.111 36.61 36.61 44.99 3.86
2070 3915 1.079503 CTCAAGCGTACAGGGAAAGC 58.920 55.000 0.00 0.00 0.00 3.51
2195 4041 3.244976 CCACAGGTTGATTCGCATTTTC 58.755 45.455 0.00 0.00 0.00 2.29
2206 4052 2.370849 GTCCCTCTAAACCACAGGTTGA 59.629 50.000 1.62 0.00 46.20 3.18
2210 4056 1.978580 ACTGTCCCTCTAAACCACAGG 59.021 52.381 0.00 0.00 39.07 4.00
2211 4057 2.289694 CCACTGTCCCTCTAAACCACAG 60.290 54.545 0.00 0.00 40.33 3.66
2222 4075 3.778622 ACTAGGAATACCACTGTCCCT 57.221 47.619 0.00 0.00 38.94 4.20
2229 4082 4.020485 ACACTGGTGAACTAGGAATACCAC 60.020 45.833 7.78 0.00 36.56 4.16
2232 4085 5.790593 TGAACACTGGTGAACTAGGAATAC 58.209 41.667 7.78 0.00 0.00 1.89
2236 4089 3.709653 ACTTGAACACTGGTGAACTAGGA 59.290 43.478 7.78 0.00 0.00 2.94
2238 4091 4.058817 GGACTTGAACACTGGTGAACTAG 58.941 47.826 7.78 8.95 0.00 2.57
2242 4095 2.238646 ACAGGACTTGAACACTGGTGAA 59.761 45.455 7.78 0.00 35.34 3.18
2243 4096 1.837439 ACAGGACTTGAACACTGGTGA 59.163 47.619 7.78 0.00 35.34 4.02
2249 4102 1.261619 CGAGCAACAGGACTTGAACAC 59.738 52.381 0.00 0.00 0.00 3.32
2251 4104 0.235926 GCGAGCAACAGGACTTGAAC 59.764 55.000 0.00 0.00 0.00 3.18
2254 4107 1.498865 AACGCGAGCAACAGGACTTG 61.499 55.000 15.93 0.00 0.00 3.16
2260 4113 2.474526 CCAGAAATAACGCGAGCAACAG 60.475 50.000 15.93 0.00 0.00 3.16
2263 4116 2.087501 TCCAGAAATAACGCGAGCAA 57.912 45.000 15.93 0.00 0.00 3.91
2278 4131 6.694411 CGCCAGAAATCTTGAAATAAATCCAG 59.306 38.462 0.00 0.00 0.00 3.86
2281 4134 7.096312 GCATCGCCAGAAATCTTGAAATAAATC 60.096 37.037 0.00 0.00 0.00 2.17
2290 4143 0.729116 ACGCATCGCCAGAAATCTTG 59.271 50.000 0.00 0.00 0.00 3.02
2292 4145 1.453155 AAACGCATCGCCAGAAATCT 58.547 45.000 0.00 0.00 0.00 2.40
2298 4151 0.453282 CACTGAAAACGCATCGCCAG 60.453 55.000 0.00 0.00 0.00 4.85
2299 4152 1.573932 CACTGAAAACGCATCGCCA 59.426 52.632 0.00 0.00 0.00 5.69
2308 4161 2.104963 ACTGTCTCCTCCCACTGAAAAC 59.895 50.000 0.00 0.00 0.00 2.43
2309 4162 2.408565 ACTGTCTCCTCCCACTGAAAA 58.591 47.619 0.00 0.00 0.00 2.29
2349 4202 8.922058 TCTTGAGATTTATAAAGTCACCGTAC 57.078 34.615 10.99 0.00 0.00 3.67
2361 4214 6.330278 CCGGCGTATCATCTTGAGATTTATA 58.670 40.000 6.01 0.00 31.21 0.98
2362 4215 5.171476 CCGGCGTATCATCTTGAGATTTAT 58.829 41.667 6.01 0.00 31.21 1.40
2373 4226 0.664767 GACTGAGCCGGCGTATCATC 60.665 60.000 23.20 12.82 0.00 2.92
2392 4245 1.668337 CCCTATGAGCATCTTCGAGCG 60.668 57.143 0.00 0.00 34.92 5.03
2393 4246 1.337635 CCCCTATGAGCATCTTCGAGC 60.338 57.143 0.00 0.00 34.92 5.03
2412 4265 4.903010 ACACACGCACACCCGACC 62.903 66.667 0.00 0.00 0.00 4.79
2425 4278 0.449786 CAACCTTGTCAACGCACACA 59.550 50.000 0.00 0.00 0.00 3.72
2430 4283 2.774439 ACATTCAACCTTGTCAACGC 57.226 45.000 0.00 0.00 0.00 4.84
2432 4285 4.917415 GTGCATACATTCAACCTTGTCAAC 59.083 41.667 0.00 0.00 0.00 3.18
2435 4288 3.188460 ACGTGCATACATTCAACCTTGTC 59.812 43.478 0.00 0.00 0.00 3.18
2437 4290 3.829886 ACGTGCATACATTCAACCTTG 57.170 42.857 0.00 0.00 0.00 3.61
2442 4296 6.073819 GCTCATACATACGTGCATACATTCAA 60.074 38.462 0.00 0.00 0.00 2.69
2522 4381 3.622514 AAAAACAAGCCACGCCCA 58.377 50.000 0.00 0.00 0.00 5.36
2545 4404 4.595629 GCCGTGCGCTGAATATTG 57.404 55.556 9.73 0.00 0.00 1.90
2555 4414 0.797249 GCGACCTATATAGCCGTGCG 60.797 60.000 17.93 11.44 0.00 5.34
2558 4417 4.677250 GCAATAAGCGACCTATATAGCCGT 60.677 45.833 17.93 7.66 0.00 5.68
2590 4449 1.152312 ATAGGAGGGCCCGTGTAGG 60.152 63.158 18.44 0.00 40.87 3.18
2591 4450 0.178958 AGATAGGAGGGCCCGTGTAG 60.179 60.000 18.44 0.00 40.87 2.74
2592 4451 0.469331 CAGATAGGAGGGCCCGTGTA 60.469 60.000 18.44 9.45 40.87 2.90
2593 4452 1.762460 CAGATAGGAGGGCCCGTGT 60.762 63.158 18.44 7.14 40.87 4.49
2594 4453 3.142393 CAGATAGGAGGGCCCGTG 58.858 66.667 18.44 2.55 40.87 4.94
2595 4454 2.844839 GCAGATAGGAGGGCCCGT 60.845 66.667 18.44 7.98 40.87 5.28
2596 4455 3.631046 GGCAGATAGGAGGGCCCG 61.631 72.222 18.44 0.00 40.55 6.13
2597 4456 3.631046 CGGCAGATAGGAGGGCCC 61.631 72.222 16.46 16.46 43.50 5.80
2608 4467 1.529152 TTAGTGAGTTCGGCGGCAGA 61.529 55.000 10.53 0.00 0.00 4.26
2637 4496 9.974980 ATGTACCTAAAATGTTCGTTGATTTTT 57.025 25.926 0.00 0.00 34.42 1.94
2638 4497 9.405587 CATGTACCTAAAATGTTCGTTGATTTT 57.594 29.630 0.00 0.00 36.14 1.82
2639 4498 8.026607 CCATGTACCTAAAATGTTCGTTGATTT 58.973 33.333 0.00 0.00 0.00 2.17
2640 4499 7.392113 TCCATGTACCTAAAATGTTCGTTGATT 59.608 33.333 0.00 0.00 0.00 2.57
2641 4500 6.882140 TCCATGTACCTAAAATGTTCGTTGAT 59.118 34.615 0.00 0.00 0.00 2.57
2642 4501 6.148150 GTCCATGTACCTAAAATGTTCGTTGA 59.852 38.462 0.00 0.00 0.00 3.18
2643 4502 6.072948 TGTCCATGTACCTAAAATGTTCGTTG 60.073 38.462 0.00 0.00 0.00 4.10
2644 4503 5.998981 TGTCCATGTACCTAAAATGTTCGTT 59.001 36.000 0.00 0.00 0.00 3.85
2645 4504 5.410439 GTGTCCATGTACCTAAAATGTTCGT 59.590 40.000 0.00 0.00 0.00 3.85
2646 4505 5.410132 TGTGTCCATGTACCTAAAATGTTCG 59.590 40.000 0.00 0.00 0.00 3.95
2647 4506 6.811253 TGTGTCCATGTACCTAAAATGTTC 57.189 37.500 0.00 0.00 0.00 3.18
2648 4507 7.775053 AATGTGTCCATGTACCTAAAATGTT 57.225 32.000 0.00 0.00 0.00 2.71
2649 4508 7.775053 AAATGTGTCCATGTACCTAAAATGT 57.225 32.000 0.00 0.00 0.00 2.71
2652 4511 9.747898 AGATAAAATGTGTCCATGTACCTAAAA 57.252 29.630 0.00 0.00 0.00 1.52
2653 4512 9.391006 GAGATAAAATGTGTCCATGTACCTAAA 57.609 33.333 0.00 0.00 0.00 1.85
2654 4513 8.544622 TGAGATAAAATGTGTCCATGTACCTAA 58.455 33.333 0.00 0.00 0.00 2.69
2655 4514 8.084985 TGAGATAAAATGTGTCCATGTACCTA 57.915 34.615 0.00 0.00 0.00 3.08
2656 4515 6.957631 TGAGATAAAATGTGTCCATGTACCT 58.042 36.000 0.00 0.00 0.00 3.08
2657 4516 7.624360 TTGAGATAAAATGTGTCCATGTACC 57.376 36.000 0.00 0.00 0.00 3.34
2663 4522 9.778741 GACCTATATTGAGATAAAATGTGTCCA 57.221 33.333 0.00 0.00 0.00 4.02
2664 4523 9.778741 TGACCTATATTGAGATAAAATGTGTCC 57.221 33.333 0.00 0.00 0.00 4.02
2673 4532 9.440773 GTGCATCATTGACCTATATTGAGATAA 57.559 33.333 0.00 0.00 0.00 1.75
2674 4533 8.596293 TGTGCATCATTGACCTATATTGAGATA 58.404 33.333 0.00 0.00 0.00 1.98
2675 4534 7.455891 TGTGCATCATTGACCTATATTGAGAT 58.544 34.615 0.00 0.00 0.00 2.75
2676 4535 6.829849 TGTGCATCATTGACCTATATTGAGA 58.170 36.000 0.00 0.00 0.00 3.27
2677 4536 7.683437 ATGTGCATCATTGACCTATATTGAG 57.317 36.000 0.00 0.00 32.08 3.02
2707 4566 9.290988 TGTTCATGCCTTAAGTATCTTGTAAAA 57.709 29.630 0.97 0.00 0.00 1.52
2708 4567 8.856153 TGTTCATGCCTTAAGTATCTTGTAAA 57.144 30.769 0.97 0.00 0.00 2.01
2711 4570 9.632638 AATATGTTCATGCCTTAAGTATCTTGT 57.367 29.630 0.97 0.00 0.00 3.16
2722 4581 9.480053 GTGCATATAAAAATATGTTCATGCCTT 57.520 29.630 13.31 0.00 37.36 4.35
2723 4582 8.640651 TGTGCATATAAAAATATGTTCATGCCT 58.359 29.630 13.31 0.00 37.36 4.75
2724 4583 8.815141 TGTGCATATAAAAATATGTTCATGCC 57.185 30.769 13.31 8.20 37.36 4.40
2738 4597 9.979578 ACAGAAAAAGATGTTTGTGCATATAAA 57.020 25.926 0.00 0.00 35.69 1.40
2776 4635 4.358851 CGTTCATGGAGCAAACTCAAAAA 58.641 39.130 0.00 0.00 45.42 1.94
2777 4636 3.795150 GCGTTCATGGAGCAAACTCAAAA 60.795 43.478 0.00 0.00 45.42 2.44
2778 4637 2.287547 GCGTTCATGGAGCAAACTCAAA 60.288 45.455 0.00 0.00 45.42 2.69
2779 4638 1.266718 GCGTTCATGGAGCAAACTCAA 59.733 47.619 0.00 0.00 45.42 3.02
2780 4639 0.874390 GCGTTCATGGAGCAAACTCA 59.126 50.000 0.00 0.00 45.42 3.41
2781 4640 0.874390 TGCGTTCATGGAGCAAACTC 59.126 50.000 7.91 0.00 42.66 3.01
2782 4641 0.593128 GTGCGTTCATGGAGCAAACT 59.407 50.000 11.13 0.00 42.93 2.66
2783 4642 0.310543 TGTGCGTTCATGGAGCAAAC 59.689 50.000 11.13 0.00 42.93 2.93
2784 4643 0.310543 GTGTGCGTTCATGGAGCAAA 59.689 50.000 11.13 4.85 42.93 3.68
2785 4644 1.840630 CGTGTGCGTTCATGGAGCAA 61.841 55.000 11.13 2.16 42.93 3.91
2786 4645 2.316867 CGTGTGCGTTCATGGAGCA 61.317 57.895 6.57 6.57 38.71 4.26
2787 4646 2.476051 CGTGTGCGTTCATGGAGC 59.524 61.111 0.00 0.00 0.00 4.70
2788 4647 2.476051 GCGTGTGCGTTCATGGAG 59.524 61.111 0.00 0.00 40.81 3.86
2799 4658 1.009903 CATGTGGCCATTTGCGTGTG 61.010 55.000 9.72 0.00 42.61 3.82
2803 4662 2.184836 CCCATGTGGCCATTTGCG 59.815 61.111 9.72 0.00 42.61 4.85
2823 4682 4.641645 CGGTCCTGCTGTTGGGCA 62.642 66.667 0.00 0.00 40.15 5.36
2840 4699 2.197283 TTTGGAATTTTGCATGGGGC 57.803 45.000 0.00 0.00 45.13 5.80
2841 4700 5.725325 AATTTTTGGAATTTTGCATGGGG 57.275 34.783 0.00 0.00 0.00 4.96
2842 4701 7.040548 ACACTAATTTTTGGAATTTTGCATGGG 60.041 33.333 0.00 0.00 0.00 4.00
2843 4702 7.873910 ACACTAATTTTTGGAATTTTGCATGG 58.126 30.769 0.00 0.00 0.00 3.66
2844 4703 9.384682 GAACACTAATTTTTGGAATTTTGCATG 57.615 29.630 0.00 0.00 0.00 4.06
2847 4706 8.069574 CCAGAACACTAATTTTTGGAATTTTGC 58.930 33.333 0.00 0.00 0.00 3.68
2859 4718 2.744202 CTCGCAGCCAGAACACTAATTT 59.256 45.455 0.00 0.00 0.00 1.82
2860 4719 2.289694 ACTCGCAGCCAGAACACTAATT 60.290 45.455 0.00 0.00 0.00 1.40
2868 4727 0.392706 TCTTTGACTCGCAGCCAGAA 59.607 50.000 0.00 0.00 0.00 3.02
2870 4729 0.601046 TGTCTTTGACTCGCAGCCAG 60.601 55.000 0.00 0.00 33.15 4.85
2877 4736 6.258068 GGGAATTAGGTATTGTCTTTGACTCG 59.742 42.308 0.00 0.00 33.15 4.18
2878 4737 7.339482 AGGGAATTAGGTATTGTCTTTGACTC 58.661 38.462 0.00 0.00 33.15 3.36
2879 4738 7.037586 TGAGGGAATTAGGTATTGTCTTTGACT 60.038 37.037 0.00 0.00 33.15 3.41
2883 4742 7.037586 TGTCTGAGGGAATTAGGTATTGTCTTT 60.038 37.037 0.00 0.00 0.00 2.52
2886 4745 6.049790 GTGTCTGAGGGAATTAGGTATTGTC 58.950 44.000 0.00 0.00 0.00 3.18
2924 4783 1.273048 GATGAATGCTTGGTTGGTGCA 59.727 47.619 0.00 0.00 41.13 4.57
2942 4801 5.246145 GTACCGCAGTACTCTTTACTGAT 57.754 43.478 14.27 3.06 45.69 2.90
2954 4813 5.945784 TCCTAGTTCTTAAAGTACCGCAGTA 59.054 40.000 0.00 0.00 0.00 2.74
2956 4815 5.320549 TCCTAGTTCTTAAAGTACCGCAG 57.679 43.478 0.00 0.00 0.00 5.18
2957 4816 5.726980 TTCCTAGTTCTTAAAGTACCGCA 57.273 39.130 0.00 0.00 0.00 5.69
2958 4817 7.710896 TCTATTCCTAGTTCTTAAAGTACCGC 58.289 38.462 0.00 0.00 0.00 5.68
2987 4846 9.889128 TTGAAATTTCAAAAATCTTCCAAGTCT 57.111 25.926 27.22 0.00 43.62 3.24
3021 4880 9.601217 TTCCCGATTTAATTTTTGTTTCAAGAA 57.399 25.926 0.00 0.00 0.00 2.52
3023 4882 8.821894 TGTTCCCGATTTAATTTTTGTTTCAAG 58.178 29.630 0.00 0.00 0.00 3.02
3034 4893 8.894768 TGTTGAAAAATGTTCCCGATTTAATT 57.105 26.923 0.00 0.00 0.00 1.40
3035 4894 9.500785 AATGTTGAAAAATGTTCCCGATTTAAT 57.499 25.926 0.00 0.00 0.00 1.40
3036 4895 8.768955 CAATGTTGAAAAATGTTCCCGATTTAA 58.231 29.630 0.00 0.00 0.00 1.52
3037 4896 7.928706 ACAATGTTGAAAAATGTTCCCGATTTA 59.071 29.630 0.00 0.00 0.00 1.40
3039 4898 6.202570 CACAATGTTGAAAAATGTTCCCGATT 59.797 34.615 0.00 0.00 0.00 3.34
3044 4912 5.050159 GGCTCACAATGTTGAAAAATGTTCC 60.050 40.000 0.00 0.00 0.00 3.62
3057 4925 6.347696 TCTTTCAAAATTTGGCTCACAATGT 58.652 32.000 5.83 0.00 39.21 2.71
3081 4949 8.839343 GTTCCAATTTTTCAGGATTGTTTCATT 58.161 29.630 0.00 0.00 32.65 2.57
3115 4983 9.048446 AGAGTTTCAAAAATTGTCCATGATTTG 57.952 29.630 0.00 0.00 0.00 2.32
3166 5034 9.464248 CTGAAAATTGTTCGCAAATTTTATAGC 57.536 29.630 12.30 0.00 39.50 2.97
3167 5035 9.956797 CCTGAAAATTGTTCGCAAATTTTATAG 57.043 29.630 12.30 12.64 39.50 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.