Multiple sequence alignment - TraesCS6B01G345800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G345800 chr6B 100.000 4475 0 0 1 4475 609383910 609379436 0.000000e+00 8264.0
1 TraesCS6B01G345800 chr6A 93.748 3839 132 45 731 4475 551867593 551863769 0.000000e+00 5661.0
2 TraesCS6B01G345800 chr6D 92.972 3842 156 49 715 4475 405485743 405481935 0.000000e+00 5494.0
3 TraesCS6B01G345800 chr6D 94.972 179 9 0 1 179 397049072 397049250 9.480000e-72 281.0
4 TraesCS6B01G345800 chr6D 88.623 167 13 3 178 339 397049292 397049457 9.820000e-47 198.0
5 TraesCS6B01G345800 chr6D 88.024 167 14 4 178 339 27472166 27472001 4.570000e-45 193.0
6 TraesCS6B01G345800 chr6D 97.561 41 1 0 4195 4235 264953683 264953723 2.230000e-08 71.3
7 TraesCS6B01G345800 chr7D 77.391 1380 275 27 2113 3476 130114674 130113316 0.000000e+00 785.0
8 TraesCS6B01G345800 chr7D 88.578 464 51 2 1216 1678 130116074 130115612 3.020000e-156 562.0
9 TraesCS6B01G345800 chr7D 93.296 179 11 1 1 179 63873593 63873416 3.430000e-66 263.0
10 TraesCS6B01G345800 chr7D 91.228 57 4 1 4194 4250 43598112 43598167 4.800000e-10 76.8
11 TraesCS6B01G345800 chr7D 91.071 56 4 1 4195 4250 45612957 45613011 1.730000e-09 75.0
12 TraesCS6B01G345800 chr7D 91.071 56 4 1 4195 4250 592294361 592294307 1.730000e-09 75.0
13 TraesCS6B01G345800 chr7B 77.286 1378 277 22 2113 3474 91662277 91660920 0.000000e+00 778.0
14 TraesCS6B01G345800 chr7B 88.528 462 51 2 1217 1677 91663644 91663184 3.910000e-155 558.0
15 TraesCS6B01G345800 chr7A 76.828 1381 284 23 2113 3476 129260938 129259577 0.000000e+00 745.0
16 TraesCS6B01G345800 chr7A 89.009 464 49 2 1216 1678 129262525 129262063 1.400000e-159 573.0
17 TraesCS6B01G345800 chr7A 86.010 386 48 5 331 711 700812058 700811674 4.170000e-110 409.0
18 TraesCS6B01G345800 chr7A 96.089 179 7 0 1 179 700812457 700812279 4.380000e-75 292.0
19 TraesCS6B01G345800 chr3A 85.417 384 51 5 331 711 675884968 675884587 1.170000e-105 394.0
20 TraesCS6B01G345800 chr3A 89.634 164 10 4 181 339 675885151 675884990 7.590000e-48 202.0
21 TraesCS6B01G345800 chr3A 74.902 510 77 28 102 570 594501341 594501840 7.640000e-43 185.0
22 TraesCS6B01G345800 chr1D 85.309 388 48 7 331 711 362256535 362256150 4.200000e-105 392.0
23 TraesCS6B01G345800 chr1D 84.211 399 57 6 331 725 341271825 341272221 2.530000e-102 383.0
24 TraesCS6B01G345800 chr1D 82.322 379 61 5 331 706 419255 418880 1.550000e-84 324.0
25 TraesCS6B01G345800 chr1D 96.648 179 6 0 1 179 341271418 341271596 9.410000e-77 298.0
26 TraesCS6B01G345800 chr5D 83.551 383 53 7 331 710 430540383 430540758 2.560000e-92 350.0
27 TraesCS6B01G345800 chr5D 94.413 179 10 0 1 179 136873946 136873768 4.410000e-70 276.0
28 TraesCS6B01G345800 chr1B 83.133 332 48 7 331 656 496558116 496557787 3.380000e-76 296.0
29 TraesCS6B01G345800 chr5B 94.972 179 9 0 1 179 87299155 87298977 9.480000e-72 281.0
30 TraesCS6B01G345800 chr5B 88.095 168 12 6 178 339 87298935 87298770 4.570000e-45 193.0
31 TraesCS6B01G345800 chr5B 95.745 47 2 0 4195 4241 297580454 297580500 4.800000e-10 76.8
32 TraesCS6B01G345800 chr5B 91.071 56 4 1 4195 4250 528618438 528618384 1.730000e-09 75.0
33 TraesCS6B01G345800 chr3D 94.972 179 9 0 1 179 261749324 261749146 9.480000e-72 281.0
34 TraesCS6B01G345800 chr3D 91.071 56 4 1 4195 4250 564268352 564268298 1.730000e-09 75.0
35 TraesCS6B01G345800 chr3D 89.286 56 5 1 4195 4250 228847633 228847687 8.030000e-08 69.4
36 TraesCS6B01G345800 chr4D 93.296 179 11 1 1 179 112066994 112066817 3.430000e-66 263.0
37 TraesCS6B01G345800 chr4D 93.258 178 12 0 2 179 372973640 372973463 3.430000e-66 263.0
38 TraesCS6B01G345800 chr4D 89.820 167 11 4 178 339 112066775 112066610 4.540000e-50 209.0
39 TraesCS6B01G345800 chr5A 89.820 167 11 4 178 339 205005431 205005266 4.540000e-50 209.0
40 TraesCS6B01G345800 chr5A 88.623 167 13 4 178 339 638861558 638861723 9.820000e-47 198.0
41 TraesCS6B01G345800 chr4A 89.634 164 11 3 181 339 58811492 58811330 2.110000e-48 204.0
42 TraesCS6B01G345800 chr2D 83.410 217 28 7 331 544 540823700 540823911 1.270000e-45 195.0
43 TraesCS6B01G345800 chr2D 97.619 42 1 0 4195 4236 236878116 236878075 6.210000e-09 73.1
44 TraesCS6B01G345800 chr2D 89.286 56 5 1 4195 4250 559656962 559657016 8.030000e-08 69.4
45 TraesCS6B01G345800 chrUn 87.500 168 14 4 178 339 69882216 69882050 2.130000e-43 187.0
46 TraesCS6B01G345800 chr4B 91.071 56 4 1 4195 4250 290028148 290028094 1.730000e-09 75.0
47 TraesCS6B01G345800 chr4B 97.561 41 1 0 4195 4235 564019375 564019415 2.230000e-08 71.3
48 TraesCS6B01G345800 chr1A 91.071 56 4 1 4195 4250 47365550 47365604 1.730000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G345800 chr6B 609379436 609383910 4474 True 8264.0 8264 100.0000 1 4475 1 chr6B.!!$R1 4474
1 TraesCS6B01G345800 chr6A 551863769 551867593 3824 True 5661.0 5661 93.7480 731 4475 1 chr6A.!!$R1 3744
2 TraesCS6B01G345800 chr6D 405481935 405485743 3808 True 5494.0 5494 92.9720 715 4475 1 chr6D.!!$R2 3760
3 TraesCS6B01G345800 chr7D 130113316 130116074 2758 True 673.5 785 82.9845 1216 3476 2 chr7D.!!$R3 2260
4 TraesCS6B01G345800 chr7B 91660920 91663644 2724 True 668.0 778 82.9070 1217 3474 2 chr7B.!!$R1 2257
5 TraesCS6B01G345800 chr7A 129259577 129262525 2948 True 659.0 745 82.9185 1216 3476 2 chr7A.!!$R1 2260
6 TraesCS6B01G345800 chr7A 700811674 700812457 783 True 350.5 409 91.0495 1 711 2 chr7A.!!$R2 710
7 TraesCS6B01G345800 chr3A 675884587 675885151 564 True 298.0 394 87.5255 181 711 2 chr3A.!!$R1 530
8 TraesCS6B01G345800 chr1D 341271418 341272221 803 False 340.5 383 90.4295 1 725 2 chr1D.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 644 0.036732 ATATGCGCTATGGGGTGTGG 59.963 55.0 9.73 0.0 0.00 4.17 F
683 727 0.040514 CGATGCGCTCCAAACAACAA 60.041 50.0 9.73 0.0 0.00 2.83 F
686 730 0.102120 TGCGCTCCAAACAACAAAGG 59.898 50.0 9.73 0.0 0.00 3.11 F
896 973 0.104120 CGAGAGGAGAGAGAGCGAGA 59.896 60.0 0.00 0.0 0.00 4.04 F
2009 2777 0.666274 TTGCCGTTACTCGCACTCAG 60.666 55.0 0.00 0.0 38.35 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 1689 0.836400 TGAAGAGCGGGAAGGACCTT 60.836 55.000 6.40 6.4 38.98 3.50 R
1679 1784 1.194772 CGCAAAGACGAGAAAGGGAAC 59.805 52.381 0.00 0.0 34.06 3.62 R
1742 2133 1.612950 AGTGAACAAATGCGCCAATGA 59.387 42.857 4.18 0.0 0.00 2.57 R
2803 3694 0.107214 GAATCCTCGGTGGCATCCAA 60.107 55.000 0.00 0.0 34.18 3.53 R
3581 4498 0.962855 TTCCCGCAAAATCATCCGCA 60.963 50.000 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.354011 CTATTGCTAGTTATGGTAGACAACAC 57.646 38.462 0.00 0.00 0.00 3.32
256 300 8.429237 AAGTTGGGATAATGTTACCAAATTGA 57.571 30.769 7.11 0.00 45.88 2.57
257 301 8.608185 AGTTGGGATAATGTTACCAAATTGAT 57.392 30.769 0.00 0.00 43.88 2.57
258 302 9.707957 AGTTGGGATAATGTTACCAAATTGATA 57.292 29.630 0.00 0.00 43.88 2.15
259 303 9.744468 GTTGGGATAATGTTACCAAATTGATAC 57.256 33.333 0.00 0.00 43.88 2.24
260 304 9.480861 TTGGGATAATGTTACCAAATTGATACA 57.519 29.630 0.00 0.00 39.83 2.29
261 305 8.908903 TGGGATAATGTTACCAAATTGATACAC 58.091 33.333 0.00 0.00 0.00 2.90
262 306 8.908903 GGGATAATGTTACCAAATTGATACACA 58.091 33.333 0.00 0.00 0.00 3.72
268 312 7.757526 TGTTACCAAATTGATACACATAGTGC 58.242 34.615 0.00 0.00 36.98 4.40
269 313 7.391833 TGTTACCAAATTGATACACATAGTGCA 59.608 33.333 0.00 0.00 36.98 4.57
270 314 6.441093 ACCAAATTGATACACATAGTGCAG 57.559 37.500 0.00 0.00 36.98 4.41
271 315 5.945784 ACCAAATTGATACACATAGTGCAGT 59.054 36.000 0.00 0.00 36.98 4.40
272 316 6.127925 ACCAAATTGATACACATAGTGCAGTG 60.128 38.462 3.69 3.00 41.40 3.66
273 317 6.093909 CCAAATTGATACACATAGTGCAGTGA 59.906 38.462 10.48 0.00 39.03 3.41
274 318 7.361971 CCAAATTGATACACATAGTGCAGTGAA 60.362 37.037 10.48 0.00 39.03 3.18
275 319 6.915544 ATTGATACACATAGTGCAGTGAAG 57.084 37.500 10.48 0.08 39.03 3.02
276 320 5.405935 TGATACACATAGTGCAGTGAAGT 57.594 39.130 10.48 3.89 39.03 3.01
277 321 5.793817 TGATACACATAGTGCAGTGAAGTT 58.206 37.500 10.48 0.00 39.03 2.66
278 322 5.639082 TGATACACATAGTGCAGTGAAGTTG 59.361 40.000 10.48 0.83 39.03 3.16
279 323 2.549754 ACACATAGTGCAGTGAAGTTGC 59.450 45.455 10.48 0.00 41.86 4.17
280 324 2.810274 CACATAGTGCAGTGAAGTTGCT 59.190 45.455 3.69 0.00 42.02 3.91
281 325 3.251729 CACATAGTGCAGTGAAGTTGCTT 59.748 43.478 3.69 0.00 42.02 3.91
282 326 3.885297 ACATAGTGCAGTGAAGTTGCTTT 59.115 39.130 3.69 0.00 42.02 3.51
283 327 2.857592 AGTGCAGTGAAGTTGCTTTG 57.142 45.000 0.00 0.00 42.02 2.77
284 328 2.094675 AGTGCAGTGAAGTTGCTTTGT 58.905 42.857 0.00 0.00 42.02 2.83
285 329 3.278574 AGTGCAGTGAAGTTGCTTTGTA 58.721 40.909 0.00 0.00 42.02 2.41
286 330 3.885297 AGTGCAGTGAAGTTGCTTTGTAT 59.115 39.130 0.00 0.00 42.02 2.29
287 331 3.976942 GTGCAGTGAAGTTGCTTTGTATG 59.023 43.478 0.00 0.00 42.02 2.39
288 332 3.631686 TGCAGTGAAGTTGCTTTGTATGT 59.368 39.130 0.00 0.00 42.02 2.29
289 333 4.819088 TGCAGTGAAGTTGCTTTGTATGTA 59.181 37.500 0.00 0.00 42.02 2.29
290 334 5.049474 TGCAGTGAAGTTGCTTTGTATGTAG 60.049 40.000 0.00 0.00 42.02 2.74
291 335 5.385617 CAGTGAAGTTGCTTTGTATGTAGC 58.614 41.667 0.00 0.00 37.89 3.58
292 336 5.049474 CAGTGAAGTTGCTTTGTATGTAGCA 60.049 40.000 0.00 0.00 45.06 3.49
293 337 5.049405 AGTGAAGTTGCTTTGTATGTAGCAC 60.049 40.000 0.00 0.00 46.28 4.40
294 338 5.049405 GTGAAGTTGCTTTGTATGTAGCACT 60.049 40.000 0.00 0.00 46.28 4.40
295 339 6.147164 GTGAAGTTGCTTTGTATGTAGCACTA 59.853 38.462 0.00 0.00 46.28 2.74
296 340 6.708502 TGAAGTTGCTTTGTATGTAGCACTAA 59.291 34.615 0.00 0.00 46.28 2.24
297 341 7.227711 TGAAGTTGCTTTGTATGTAGCACTAAA 59.772 33.333 0.00 0.00 46.28 1.85
298 342 7.133891 AGTTGCTTTGTATGTAGCACTAAAG 57.866 36.000 0.00 0.00 46.28 1.85
299 343 6.934645 AGTTGCTTTGTATGTAGCACTAAAGA 59.065 34.615 0.00 0.00 46.28 2.52
300 344 7.607991 AGTTGCTTTGTATGTAGCACTAAAGAT 59.392 33.333 0.00 0.00 46.28 2.40
301 345 7.307493 TGCTTTGTATGTAGCACTAAAGATG 57.693 36.000 0.00 0.00 42.12 2.90
302 346 6.183360 TGCTTTGTATGTAGCACTAAAGATGC 60.183 38.462 0.00 0.00 42.12 3.91
314 358 7.873739 GCACTAAAGATGCTTTATGTTTTGT 57.126 32.000 0.00 0.00 38.08 2.83
316 360 7.382218 GCACTAAAGATGCTTTATGTTTTGTGT 59.618 33.333 17.78 3.27 46.85 3.72
317 361 8.693504 CACTAAAGATGCTTTATGTTTTGTGTG 58.306 33.333 12.39 0.00 43.71 3.82
318 362 8.629158 ACTAAAGATGCTTTATGTTTTGTGTGA 58.371 29.630 0.00 0.00 36.91 3.58
319 363 9.630098 CTAAAGATGCTTTATGTTTTGTGTGAT 57.370 29.630 0.00 0.00 34.46 3.06
320 364 8.891671 AAAGATGCTTTATGTTTTGTGTGATT 57.108 26.923 0.00 0.00 28.65 2.57
321 365 8.891671 AAGATGCTTTATGTTTTGTGTGATTT 57.108 26.923 0.00 0.00 0.00 2.17
322 366 8.891671 AGATGCTTTATGTTTTGTGTGATTTT 57.108 26.923 0.00 0.00 0.00 1.82
323 367 9.328845 AGATGCTTTATGTTTTGTGTGATTTTT 57.671 25.926 0.00 0.00 0.00 1.94
362 406 7.929941 AAAAGAAGAAGTTGCTTCCCTATAG 57.070 36.000 5.38 0.00 44.14 1.31
363 407 5.029807 AGAAGAAGTTGCTTCCCTATAGC 57.970 43.478 5.38 0.00 44.14 2.97
364 408 4.471386 AGAAGAAGTTGCTTCCCTATAGCA 59.529 41.667 5.38 0.00 46.26 3.49
374 418 6.173339 TGCTTCCCTATAGCATTATAGTTGC 58.827 40.000 0.00 2.38 43.30 4.17
375 419 5.586643 GCTTCCCTATAGCATTATAGTTGCC 59.413 44.000 6.21 0.00 41.06 4.52
376 420 6.577239 GCTTCCCTATAGCATTATAGTTGCCT 60.577 42.308 6.21 0.00 41.06 4.75
377 421 6.546428 TCCCTATAGCATTATAGTTGCCTC 57.454 41.667 6.21 0.00 41.06 4.70
378 422 5.425539 TCCCTATAGCATTATAGTTGCCTCC 59.574 44.000 6.21 0.00 41.06 4.30
379 423 5.189736 CCCTATAGCATTATAGTTGCCTCCA 59.810 44.000 6.21 0.00 41.06 3.86
380 424 6.126652 CCCTATAGCATTATAGTTGCCTCCAT 60.127 42.308 6.21 0.28 41.06 3.41
381 425 7.341805 CCTATAGCATTATAGTTGCCTCCATT 58.658 38.462 6.21 0.00 41.06 3.16
382 426 7.281774 CCTATAGCATTATAGTTGCCTCCATTG 59.718 40.741 6.21 0.00 41.06 2.82
383 427 3.571401 AGCATTATAGTTGCCTCCATTGC 59.429 43.478 6.21 0.00 41.06 3.56
384 428 3.318839 GCATTATAGTTGCCTCCATTGCA 59.681 43.478 0.00 0.00 36.84 4.08
385 429 4.202141 GCATTATAGTTGCCTCCATTGCAA 60.202 41.667 0.00 0.00 45.83 4.08
388 432 4.615170 TTGCCTCCATTGCAACCA 57.385 50.000 0.00 0.00 43.36 3.67
389 433 2.831859 TTGCCTCCATTGCAACCAA 58.168 47.368 0.00 0.00 43.36 3.67
390 434 1.126488 TTGCCTCCATTGCAACCAAA 58.874 45.000 0.00 0.00 43.36 3.28
391 435 0.680618 TGCCTCCATTGCAACCAAAG 59.319 50.000 0.00 0.00 35.40 2.77
392 436 0.681175 GCCTCCATTGCAACCAAAGT 59.319 50.000 0.00 0.00 34.05 2.66
393 437 1.070601 GCCTCCATTGCAACCAAAGTT 59.929 47.619 0.00 0.00 36.33 2.66
431 475 9.599866 AGTTTGATGAAATGTATTCATACGAGA 57.400 29.630 3.82 0.00 39.08 4.04
434 478 9.987272 TTGATGAAATGTATTCATACGAGATCT 57.013 29.630 0.00 0.00 39.08 2.75
447 491 8.912787 TCATACGAGATCTACTTTTGAAGAAC 57.087 34.615 0.00 0.00 0.00 3.01
448 492 8.740906 TCATACGAGATCTACTTTTGAAGAACT 58.259 33.333 0.00 0.00 0.00 3.01
449 493 9.015577 CATACGAGATCTACTTTTGAAGAACTC 57.984 37.037 0.00 0.00 0.00 3.01
450 494 6.087522 ACGAGATCTACTTTTGAAGAACTCG 58.912 40.000 22.31 22.31 45.36 4.18
451 495 6.087522 CGAGATCTACTTTTGAAGAACTCGT 58.912 40.000 18.21 0.00 38.66 4.18
452 496 6.249682 CGAGATCTACTTTTGAAGAACTCGTC 59.750 42.308 18.21 0.00 38.66 4.20
453 497 6.087522 AGATCTACTTTTGAAGAACTCGTCG 58.912 40.000 0.00 0.00 0.00 5.12
454 498 5.179045 TCTACTTTTGAAGAACTCGTCGT 57.821 39.130 0.00 0.00 0.00 4.34
455 499 5.210715 TCTACTTTTGAAGAACTCGTCGTC 58.789 41.667 0.00 0.00 35.49 4.20
456 500 3.777478 ACTTTTGAAGAACTCGTCGTCA 58.223 40.909 0.00 0.00 42.18 4.35
457 501 3.797256 ACTTTTGAAGAACTCGTCGTCAG 59.203 43.478 0.00 0.00 44.18 3.51
458 502 3.703286 TTTGAAGAACTCGTCGTCAGA 57.297 42.857 0.00 0.00 44.18 3.27
459 503 3.703286 TTGAAGAACTCGTCGTCAGAA 57.297 42.857 0.00 0.00 44.18 3.02
460 504 3.703286 TGAAGAACTCGTCGTCAGAAA 57.297 42.857 0.00 0.00 39.48 2.52
461 505 4.238761 TGAAGAACTCGTCGTCAGAAAT 57.761 40.909 0.00 0.00 39.48 2.17
462 506 4.227538 TGAAGAACTCGTCGTCAGAAATC 58.772 43.478 0.00 0.00 39.48 2.17
463 507 4.023107 TGAAGAACTCGTCGTCAGAAATCT 60.023 41.667 0.00 0.00 39.48 2.40
464 508 5.180680 TGAAGAACTCGTCGTCAGAAATCTA 59.819 40.000 0.00 0.00 39.48 1.98
465 509 5.624344 AGAACTCGTCGTCAGAAATCTAA 57.376 39.130 0.00 0.00 0.00 2.10
466 510 5.632959 AGAACTCGTCGTCAGAAATCTAAG 58.367 41.667 0.00 0.00 0.00 2.18
467 511 4.358494 ACTCGTCGTCAGAAATCTAAGG 57.642 45.455 0.00 0.00 0.00 2.69
468 512 3.757493 ACTCGTCGTCAGAAATCTAAGGT 59.243 43.478 0.00 0.00 0.00 3.50
469 513 4.092771 TCGTCGTCAGAAATCTAAGGTG 57.907 45.455 0.00 0.00 0.00 4.00
470 514 3.754850 TCGTCGTCAGAAATCTAAGGTGA 59.245 43.478 0.00 0.00 0.00 4.02
471 515 4.216902 TCGTCGTCAGAAATCTAAGGTGAA 59.783 41.667 0.00 0.00 0.00 3.18
472 516 4.921515 CGTCGTCAGAAATCTAAGGTGAAA 59.078 41.667 0.00 0.00 0.00 2.69
473 517 5.061064 CGTCGTCAGAAATCTAAGGTGAAAG 59.939 44.000 0.00 0.00 0.00 2.62
474 518 4.929808 TCGTCAGAAATCTAAGGTGAAAGC 59.070 41.667 0.00 0.00 0.00 3.51
475 519 4.201628 CGTCAGAAATCTAAGGTGAAAGCG 60.202 45.833 0.00 0.00 40.95 4.68
476 520 4.929808 GTCAGAAATCTAAGGTGAAAGCGA 59.070 41.667 0.00 0.00 40.95 4.93
477 521 5.408604 GTCAGAAATCTAAGGTGAAAGCGAA 59.591 40.000 0.00 0.00 40.95 4.70
478 522 5.995282 TCAGAAATCTAAGGTGAAAGCGAAA 59.005 36.000 0.00 0.00 40.95 3.46
479 523 6.073222 TCAGAAATCTAAGGTGAAAGCGAAAC 60.073 38.462 0.00 0.00 40.95 2.78
480 524 5.998363 AGAAATCTAAGGTGAAAGCGAAACT 59.002 36.000 0.00 0.00 40.95 2.66
481 525 5.613358 AATCTAAGGTGAAAGCGAAACTG 57.387 39.130 0.00 0.00 40.95 3.16
482 526 4.330944 TCTAAGGTGAAAGCGAAACTGA 57.669 40.909 0.00 0.00 40.95 3.41
483 527 4.699637 TCTAAGGTGAAAGCGAAACTGAA 58.300 39.130 0.00 0.00 40.95 3.02
484 528 5.305585 TCTAAGGTGAAAGCGAAACTGAAT 58.694 37.500 0.00 0.00 40.95 2.57
485 529 4.918810 AAGGTGAAAGCGAAACTGAATT 57.081 36.364 0.00 0.00 40.95 2.17
486 530 4.918810 AGGTGAAAGCGAAACTGAATTT 57.081 36.364 0.00 0.00 40.95 1.82
487 531 5.262588 AGGTGAAAGCGAAACTGAATTTT 57.737 34.783 0.00 0.00 40.95 1.82
488 532 5.043248 AGGTGAAAGCGAAACTGAATTTTG 58.957 37.500 0.00 0.00 40.95 2.44
489 533 5.040635 GGTGAAAGCGAAACTGAATTTTGA 58.959 37.500 0.00 0.00 33.93 2.69
490 534 5.691754 GGTGAAAGCGAAACTGAATTTTGAT 59.308 36.000 0.00 0.00 33.93 2.57
491 535 6.346040 GGTGAAAGCGAAACTGAATTTTGATG 60.346 38.462 0.00 0.00 33.93 3.07
492 536 5.175491 TGAAAGCGAAACTGAATTTTGATGC 59.825 36.000 0.00 0.00 33.93 3.91
493 537 4.510038 AGCGAAACTGAATTTTGATGCT 57.490 36.364 0.00 0.00 33.93 3.79
494 538 4.874970 AGCGAAACTGAATTTTGATGCTT 58.125 34.783 0.00 0.00 33.93 3.91
495 539 4.682860 AGCGAAACTGAATTTTGATGCTTG 59.317 37.500 0.00 0.00 33.93 4.01
496 540 4.681025 GCGAAACTGAATTTTGATGCTTGA 59.319 37.500 0.00 0.00 33.93 3.02
497 541 5.175491 GCGAAACTGAATTTTGATGCTTGAA 59.825 36.000 0.00 0.00 33.93 2.69
498 542 6.128742 GCGAAACTGAATTTTGATGCTTGAAT 60.129 34.615 0.00 0.00 33.93 2.57
499 543 7.442657 CGAAACTGAATTTTGATGCTTGAATC 58.557 34.615 0.00 0.00 33.93 2.52
500 544 6.939551 AACTGAATTTTGATGCTTGAATCG 57.060 33.333 0.00 0.00 0.00 3.34
501 545 6.258230 ACTGAATTTTGATGCTTGAATCGA 57.742 33.333 0.00 0.00 0.00 3.59
502 546 6.680810 ACTGAATTTTGATGCTTGAATCGAA 58.319 32.000 0.00 0.00 0.00 3.71
503 547 7.147312 ACTGAATTTTGATGCTTGAATCGAAA 58.853 30.769 6.49 6.49 41.80 3.46
504 548 7.327761 ACTGAATTTTGATGCTTGAATCGAAAG 59.672 33.333 9.23 0.00 41.20 2.62
505 549 7.147312 TGAATTTTGATGCTTGAATCGAAAGT 58.853 30.769 9.23 6.96 41.20 2.66
506 550 7.652909 TGAATTTTGATGCTTGAATCGAAAGTT 59.347 29.630 9.23 5.16 41.20 2.66
507 551 9.128107 GAATTTTGATGCTTGAATCGAAAGTTA 57.872 29.630 9.23 0.00 41.20 2.24
508 552 9.643693 AATTTTGATGCTTGAATCGAAAGTTAT 57.356 25.926 9.23 0.00 41.20 1.89
509 553 8.451687 TTTTGATGCTTGAATCGAAAGTTATG 57.548 30.769 0.00 0.00 35.79 1.90
510 554 5.572211 TGATGCTTGAATCGAAAGTTATGC 58.428 37.500 0.00 0.00 0.00 3.14
511 555 4.355543 TGCTTGAATCGAAAGTTATGCC 57.644 40.909 0.00 0.00 0.00 4.40
512 556 4.009675 TGCTTGAATCGAAAGTTATGCCT 58.990 39.130 0.00 0.00 0.00 4.75
513 557 4.458989 TGCTTGAATCGAAAGTTATGCCTT 59.541 37.500 0.00 0.00 0.00 4.35
514 558 5.048083 TGCTTGAATCGAAAGTTATGCCTTT 60.048 36.000 0.00 0.00 37.37 3.11
515 559 5.863935 GCTTGAATCGAAAGTTATGCCTTTT 59.136 36.000 0.00 0.00 34.87 2.27
516 560 7.027161 GCTTGAATCGAAAGTTATGCCTTTTA 58.973 34.615 0.00 0.00 34.87 1.52
517 561 7.008357 GCTTGAATCGAAAGTTATGCCTTTTAC 59.992 37.037 0.00 0.00 34.87 2.01
518 562 7.441890 TGAATCGAAAGTTATGCCTTTTACA 57.558 32.000 0.00 0.00 34.87 2.41
519 563 7.877003 TGAATCGAAAGTTATGCCTTTTACAA 58.123 30.769 0.00 0.00 34.87 2.41
520 564 7.806014 TGAATCGAAAGTTATGCCTTTTACAAC 59.194 33.333 0.00 0.00 34.87 3.32
521 565 6.870971 TCGAAAGTTATGCCTTTTACAACT 57.129 33.333 0.00 0.00 34.87 3.16
522 566 7.266922 TCGAAAGTTATGCCTTTTACAACTT 57.733 32.000 0.00 0.00 40.25 2.66
523 567 7.708998 TCGAAAGTTATGCCTTTTACAACTTT 58.291 30.769 9.74 9.74 46.56 2.66
529 573 9.961265 AGTTATGCCTTTTACAACTTTCTAAAC 57.039 29.630 0.00 0.00 0.00 2.01
530 574 9.188588 GTTATGCCTTTTACAACTTTCTAAACC 57.811 33.333 0.00 0.00 0.00 3.27
531 575 7.597288 ATGCCTTTTACAACTTTCTAAACCT 57.403 32.000 0.00 0.00 0.00 3.50
532 576 7.034685 TGCCTTTTACAACTTTCTAAACCTC 57.965 36.000 0.00 0.00 0.00 3.85
533 577 6.603997 TGCCTTTTACAACTTTCTAAACCTCA 59.396 34.615 0.00 0.00 0.00 3.86
534 578 7.122948 TGCCTTTTACAACTTTCTAAACCTCAA 59.877 33.333 0.00 0.00 0.00 3.02
535 579 7.977293 GCCTTTTACAACTTTCTAAACCTCAAA 59.023 33.333 0.00 0.00 0.00 2.69
542 586 9.476202 ACAACTTTCTAAACCTCAAATAAATGC 57.524 29.630 0.00 0.00 0.00 3.56
543 587 9.474920 CAACTTTCTAAACCTCAAATAAATGCA 57.525 29.630 0.00 0.00 0.00 3.96
550 594 9.533253 CTAAACCTCAAATAAATGCATTTAGGG 57.467 33.333 28.94 25.25 35.88 3.53
551 595 7.732222 AACCTCAAATAAATGCATTTAGGGA 57.268 32.000 28.94 24.39 35.88 4.20
552 596 7.919385 ACCTCAAATAAATGCATTTAGGGAT 57.081 32.000 28.94 17.09 35.88 3.85
553 597 9.432982 AACCTCAAATAAATGCATTTAGGGATA 57.567 29.630 28.94 14.94 35.88 2.59
554 598 9.082313 ACCTCAAATAAATGCATTTAGGGATAG 57.918 33.333 28.94 22.50 35.88 2.08
555 599 8.526147 CCTCAAATAAATGCATTTAGGGATAGG 58.474 37.037 29.88 25.65 35.88 2.57
556 600 9.300681 CTCAAATAAATGCATTTAGGGATAGGA 57.699 33.333 29.88 19.73 35.88 2.94
557 601 9.827198 TCAAATAAATGCATTTAGGGATAGGAT 57.173 29.630 29.88 13.47 35.88 3.24
563 607 8.870075 AATGCATTTAGGGATAGGATTTAGAC 57.130 34.615 5.99 0.00 0.00 2.59
564 608 7.633018 TGCATTTAGGGATAGGATTTAGACT 57.367 36.000 0.00 0.00 0.00 3.24
565 609 7.453393 TGCATTTAGGGATAGGATTTAGACTG 58.547 38.462 0.00 0.00 0.00 3.51
566 610 7.292356 TGCATTTAGGGATAGGATTTAGACTGA 59.708 37.037 0.00 0.00 0.00 3.41
567 611 8.325046 GCATTTAGGGATAGGATTTAGACTGAT 58.675 37.037 0.00 0.00 0.00 2.90
570 614 9.447279 TTTAGGGATAGGATTTAGACTGATTCA 57.553 33.333 0.00 0.00 0.00 2.57
571 615 7.937700 AGGGATAGGATTTAGACTGATTCAA 57.062 36.000 0.00 0.00 0.00 2.69
572 616 8.517323 AGGGATAGGATTTAGACTGATTCAAT 57.483 34.615 0.00 0.00 0.00 2.57
573 617 8.601546 AGGGATAGGATTTAGACTGATTCAATC 58.398 37.037 0.00 0.00 0.00 2.67
574 618 7.547370 GGGATAGGATTTAGACTGATTCAATCG 59.453 40.741 0.00 0.00 0.00 3.34
575 619 7.547370 GGATAGGATTTAGACTGATTCAATCGG 59.453 40.741 4.51 4.51 41.49 4.18
576 620 5.059833 AGGATTTAGACTGATTCAATCGGC 58.940 41.667 6.09 0.00 39.30 5.54
577 621 4.816385 GGATTTAGACTGATTCAATCGGCA 59.184 41.667 6.09 0.00 39.30 5.69
578 622 5.471456 GGATTTAGACTGATTCAATCGGCAT 59.529 40.000 6.09 0.00 39.30 4.40
579 623 5.991328 TTTAGACTGATTCAATCGGCATC 57.009 39.130 6.09 0.00 39.30 3.91
580 624 2.843701 AGACTGATTCAATCGGCATCC 58.156 47.619 6.09 0.00 39.30 3.51
581 625 2.171237 AGACTGATTCAATCGGCATCCA 59.829 45.455 6.09 0.00 39.30 3.41
582 626 3.144506 GACTGATTCAATCGGCATCCAT 58.855 45.455 6.09 0.00 39.30 3.41
583 627 4.040829 AGACTGATTCAATCGGCATCCATA 59.959 41.667 6.09 0.00 39.30 2.74
584 628 4.914983 ACTGATTCAATCGGCATCCATAT 58.085 39.130 6.09 0.00 39.30 1.78
585 629 4.698780 ACTGATTCAATCGGCATCCATATG 59.301 41.667 6.09 0.00 39.30 1.78
598 642 3.631453 CATATGCGCTATGGGGTGT 57.369 52.632 9.73 0.00 34.67 4.16
599 643 1.159285 CATATGCGCTATGGGGTGTG 58.841 55.000 9.73 0.00 34.67 3.82
600 644 0.036732 ATATGCGCTATGGGGTGTGG 59.963 55.000 9.73 0.00 0.00 4.17
601 645 2.674563 TATGCGCTATGGGGTGTGGC 62.675 60.000 9.73 0.00 0.00 5.01
603 647 4.108299 CGCTATGGGGTGTGGCCA 62.108 66.667 0.00 0.00 39.65 5.36
604 648 2.358619 GCTATGGGGTGTGGCCAA 59.641 61.111 7.24 0.00 39.65 4.52
605 649 1.754234 GCTATGGGGTGTGGCCAAG 60.754 63.158 7.24 0.00 39.65 3.61
606 650 1.754234 CTATGGGGTGTGGCCAAGC 60.754 63.158 7.24 7.85 39.65 4.01
607 651 2.497792 CTATGGGGTGTGGCCAAGCA 62.498 60.000 7.24 0.00 39.65 3.91
608 652 2.086599 TATGGGGTGTGGCCAAGCAA 62.087 55.000 7.24 0.76 39.65 3.91
609 653 2.604382 GGGGTGTGGCCAAGCAAT 60.604 61.111 7.24 0.00 39.65 3.56
610 654 2.216331 GGGGTGTGGCCAAGCAATT 61.216 57.895 7.24 0.00 39.65 2.32
611 655 1.754107 GGGTGTGGCCAAGCAATTT 59.246 52.632 7.24 0.00 39.65 1.82
612 656 0.108396 GGGTGTGGCCAAGCAATTTT 59.892 50.000 7.24 0.00 39.65 1.82
613 657 1.476652 GGGTGTGGCCAAGCAATTTTT 60.477 47.619 7.24 0.00 39.65 1.94
634 678 4.514781 TTTTTCTAGCGTAGACAGCAGA 57.485 40.909 0.00 0.00 33.84 4.26
635 679 4.514781 TTTTCTAGCGTAGACAGCAGAA 57.485 40.909 0.00 0.00 33.84 3.02
636 680 3.489180 TTCTAGCGTAGACAGCAGAAC 57.511 47.619 0.00 0.00 33.84 3.01
637 681 2.433436 TCTAGCGTAGACAGCAGAACA 58.567 47.619 0.00 0.00 37.01 3.18
638 682 2.420372 TCTAGCGTAGACAGCAGAACAG 59.580 50.000 0.00 0.00 37.01 3.16
639 683 1.248486 AGCGTAGACAGCAGAACAGA 58.752 50.000 0.00 0.00 37.01 3.41
640 684 1.613925 AGCGTAGACAGCAGAACAGAA 59.386 47.619 0.00 0.00 37.01 3.02
641 685 1.989165 GCGTAGACAGCAGAACAGAAG 59.011 52.381 0.00 0.00 34.19 2.85
642 686 2.600731 CGTAGACAGCAGAACAGAAGG 58.399 52.381 0.00 0.00 0.00 3.46
643 687 2.229062 CGTAGACAGCAGAACAGAAGGA 59.771 50.000 0.00 0.00 0.00 3.36
644 688 2.829741 AGACAGCAGAACAGAAGGAC 57.170 50.000 0.00 0.00 0.00 3.85
645 689 2.042464 AGACAGCAGAACAGAAGGACA 58.958 47.619 0.00 0.00 0.00 4.02
646 690 2.636893 AGACAGCAGAACAGAAGGACAT 59.363 45.455 0.00 0.00 0.00 3.06
647 691 2.740981 GACAGCAGAACAGAAGGACATG 59.259 50.000 0.00 0.00 0.00 3.21
648 692 1.467734 CAGCAGAACAGAAGGACATGC 59.532 52.381 0.00 0.00 0.00 4.06
649 693 1.072806 AGCAGAACAGAAGGACATGCA 59.927 47.619 0.00 0.00 34.71 3.96
650 694 1.198637 GCAGAACAGAAGGACATGCAC 59.801 52.381 0.00 0.00 32.58 4.57
651 695 2.775890 CAGAACAGAAGGACATGCACT 58.224 47.619 0.00 0.00 0.00 4.40
652 696 3.144506 CAGAACAGAAGGACATGCACTT 58.855 45.455 2.43 2.43 0.00 3.16
653 697 4.318332 CAGAACAGAAGGACATGCACTTA 58.682 43.478 2.79 0.00 0.00 2.24
654 698 4.153117 CAGAACAGAAGGACATGCACTTAC 59.847 45.833 2.79 0.00 0.00 2.34
655 699 4.040952 AGAACAGAAGGACATGCACTTACT 59.959 41.667 2.79 1.01 0.00 2.24
656 700 5.246203 AGAACAGAAGGACATGCACTTACTA 59.754 40.000 2.79 0.00 0.00 1.82
657 701 5.683876 ACAGAAGGACATGCACTTACTAT 57.316 39.130 2.79 0.00 0.00 2.12
658 702 6.791867 ACAGAAGGACATGCACTTACTATA 57.208 37.500 2.79 0.00 0.00 1.31
659 703 7.366847 ACAGAAGGACATGCACTTACTATAT 57.633 36.000 2.79 0.00 0.00 0.86
660 704 8.478775 ACAGAAGGACATGCACTTACTATATA 57.521 34.615 2.79 0.00 0.00 0.86
661 705 8.361139 ACAGAAGGACATGCACTTACTATATAC 58.639 37.037 2.79 0.00 0.00 1.47
662 706 7.539022 CAGAAGGACATGCACTTACTATATACG 59.461 40.741 2.79 0.00 0.00 3.06
663 707 6.268825 AGGACATGCACTTACTATATACGG 57.731 41.667 0.00 0.00 0.00 4.02
664 708 4.863131 GGACATGCACTTACTATATACGGC 59.137 45.833 0.00 0.00 0.00 5.68
665 709 4.482386 ACATGCACTTACTATATACGGCG 58.518 43.478 4.80 4.80 0.00 6.46
666 710 4.216902 ACATGCACTTACTATATACGGCGA 59.783 41.667 16.62 0.00 0.00 5.54
667 711 5.105877 ACATGCACTTACTATATACGGCGAT 60.106 40.000 16.62 5.41 0.00 4.58
668 712 4.729595 TGCACTTACTATATACGGCGATG 58.270 43.478 16.62 0.00 0.00 3.84
669 713 3.546670 GCACTTACTATATACGGCGATGC 59.453 47.826 16.62 1.89 0.00 3.91
670 714 3.784468 CACTTACTATATACGGCGATGCG 59.216 47.826 16.62 0.00 0.00 4.73
681 725 4.440214 CGATGCGCTCCAAACAAC 57.560 55.556 9.73 0.00 0.00 3.32
682 726 1.573932 CGATGCGCTCCAAACAACA 59.426 52.632 9.73 0.00 0.00 3.33
683 727 0.040514 CGATGCGCTCCAAACAACAA 60.041 50.000 9.73 0.00 0.00 2.83
684 728 1.599171 CGATGCGCTCCAAACAACAAA 60.599 47.619 9.73 0.00 0.00 2.83
685 729 2.053627 GATGCGCTCCAAACAACAAAG 58.946 47.619 9.73 0.00 0.00 2.77
686 730 0.102120 TGCGCTCCAAACAACAAAGG 59.898 50.000 9.73 0.00 0.00 3.11
687 731 0.383949 GCGCTCCAAACAACAAAGGA 59.616 50.000 0.00 0.00 0.00 3.36
690 734 2.405892 CTCCAAACAACAAAGGAGCG 57.594 50.000 0.00 0.00 40.98 5.03
691 735 0.383949 TCCAAACAACAAAGGAGCGC 59.616 50.000 0.00 0.00 0.00 5.92
692 736 0.102120 CCAAACAACAAAGGAGCGCA 59.898 50.000 11.47 0.00 0.00 6.09
693 737 1.480205 CAAACAACAAAGGAGCGCAG 58.520 50.000 11.47 0.00 0.00 5.18
707 751 3.865830 GCAGCGGCGCTCCTTAAC 61.866 66.667 34.22 13.31 36.40 2.01
708 752 3.195698 CAGCGGCGCTCCTTAACC 61.196 66.667 34.22 0.00 36.40 2.85
709 753 3.702048 AGCGGCGCTCCTTAACCA 61.702 61.111 31.35 0.00 30.62 3.67
710 754 3.497031 GCGGCGCTCCTTAACCAC 61.497 66.667 26.86 0.00 0.00 4.16
711 755 2.818274 CGGCGCTCCTTAACCACC 60.818 66.667 7.64 0.00 0.00 4.61
712 756 2.669240 GGCGCTCCTTAACCACCT 59.331 61.111 7.64 0.00 0.00 4.00
713 757 1.902556 GGCGCTCCTTAACCACCTA 59.097 57.895 7.64 0.00 0.00 3.08
749 793 6.791466 TCCCTTCCATTATCATCAATCTCTCT 59.209 38.462 0.00 0.00 0.00 3.10
753 797 6.228995 TCCATTATCATCAATCTCTCTGTGC 58.771 40.000 0.00 0.00 0.00 4.57
820 864 3.681835 GTCGTCTCCGGGCACTGT 61.682 66.667 0.00 0.00 33.95 3.55
821 865 3.371063 TCGTCTCCGGGCACTGTC 61.371 66.667 0.00 0.00 33.95 3.51
829 873 4.736896 GGGCACTGTCGTCCGGAC 62.737 72.222 25.28 25.28 46.27 4.79
839 883 4.492160 GTCCGGACGCATCGCTCA 62.492 66.667 20.85 0.00 0.00 4.26
850 919 0.107268 CATCGCTCACCATCCATCCA 59.893 55.000 0.00 0.00 0.00 3.41
888 965 2.438614 CACCGGCGAGAGGAGAGA 60.439 66.667 9.30 0.00 0.00 3.10
889 966 2.124487 ACCGGCGAGAGGAGAGAG 60.124 66.667 9.30 0.00 0.00 3.20
890 967 2.190843 CCGGCGAGAGGAGAGAGA 59.809 66.667 9.30 0.00 0.00 3.10
891 968 1.891919 CCGGCGAGAGGAGAGAGAG 60.892 68.421 9.30 0.00 0.00 3.20
892 969 2.542907 CGGCGAGAGGAGAGAGAGC 61.543 68.421 0.00 0.00 0.00 4.09
893 970 2.542907 GGCGAGAGGAGAGAGAGCG 61.543 68.421 0.00 0.00 0.00 5.03
894 971 1.522806 GCGAGAGGAGAGAGAGCGA 60.523 63.158 0.00 0.00 0.00 4.93
895 972 1.498865 GCGAGAGGAGAGAGAGCGAG 61.499 65.000 0.00 0.00 0.00 5.03
896 973 0.104120 CGAGAGGAGAGAGAGCGAGA 59.896 60.000 0.00 0.00 0.00 4.04
897 974 1.869754 CGAGAGGAGAGAGAGCGAGAG 60.870 61.905 0.00 0.00 0.00 3.20
1147 1240 4.415332 GCGACGACTCTTCCGGCA 62.415 66.667 0.00 0.00 34.04 5.69
1148 1241 2.202492 CGACGACTCTTCCGGCAG 60.202 66.667 0.00 0.00 34.04 4.85
1149 1242 2.507324 GACGACTCTTCCGGCAGC 60.507 66.667 0.00 0.00 34.67 5.25
1150 1243 4.421479 ACGACTCTTCCGGCAGCG 62.421 66.667 0.00 0.00 0.00 5.18
1698 1808 1.535896 GGTTCCCTTTCTCGTCTTTGC 59.464 52.381 0.00 0.00 0.00 3.68
1874 2607 6.070366 CCATGGATCAGAATCTTATCTAGGCA 60.070 42.308 5.56 0.00 32.12 4.75
1999 2767 2.735134 ACACTCGAATCTTTGCCGTTAC 59.265 45.455 0.00 0.00 0.00 2.50
2001 2769 3.060895 CACTCGAATCTTTGCCGTTACTC 59.939 47.826 0.00 0.00 0.00 2.59
2009 2777 0.666274 TTGCCGTTACTCGCACTCAG 60.666 55.000 0.00 0.00 38.35 3.35
2018 2786 3.319137 ACTCGCACTCAGCTTTTGATA 57.681 42.857 0.00 0.00 42.61 2.15
2024 2792 5.008613 TCGCACTCAGCTTTTGATAGTTTTT 59.991 36.000 0.00 0.00 42.61 1.94
2025 2793 5.340667 CGCACTCAGCTTTTGATAGTTTTTC 59.659 40.000 0.00 0.00 42.61 2.29
2059 2827 5.627499 TGGCAAATAGTTCTAGCAAACTG 57.373 39.130 7.01 0.00 39.74 3.16
2103 2949 5.696270 TGTGTATCTTATGGATCGTTGCATC 59.304 40.000 3.55 0.00 35.32 3.91
2108 2954 9.155975 GTATCTTATGGATCGTTGCATCTATTT 57.844 33.333 3.55 0.00 35.32 1.40
2166 3015 6.149616 AGATTATTTCCATGAGGAGGAGAGT 58.850 40.000 0.00 0.00 46.74 3.24
2304 3153 2.259818 CCAGCTCTGCGTCGTCTT 59.740 61.111 0.00 0.00 0.00 3.01
2876 3767 0.835941 ATCTCAGAAGGCTGCCGAAT 59.164 50.000 13.96 3.47 42.01 3.34
3180 4071 5.624509 CGGGAATAGTGACATGTCTCTTCAA 60.625 44.000 29.53 16.16 35.38 2.69
3225 4116 0.035881 TGCAGAAGCTTGAGGTCAGG 59.964 55.000 2.10 0.00 42.74 3.86
3501 4418 6.040842 ACTGCCATTGAAGAAGTTTGTTGTAT 59.959 34.615 0.00 0.00 0.00 2.29
3525 4442 7.016153 TGGTCATGTTTGTTCTACTATTCCT 57.984 36.000 0.00 0.00 0.00 3.36
3531 4448 8.607459 CATGTTTGTTCTACTATTCCTGATCAC 58.393 37.037 0.00 0.00 0.00 3.06
3576 4493 1.264045 GCCAGAGCCAGAGAGGAAGT 61.264 60.000 0.00 0.00 41.22 3.01
3581 4498 0.118144 AGCCAGAGAGGAAGTTCCCT 59.882 55.000 18.65 14.59 41.22 4.20
3595 4512 0.817013 TTCCCTGCGGATGATTTTGC 59.183 50.000 0.00 0.00 38.24 3.68
3596 4513 1.064621 CCCTGCGGATGATTTTGCG 59.935 57.895 0.00 0.00 0.00 4.85
3597 4514 1.064621 CCTGCGGATGATTTTGCGG 59.935 57.895 0.00 0.00 0.00 5.69
3598 4515 1.064621 CTGCGGATGATTTTGCGGG 59.935 57.895 0.00 0.00 0.00 6.13
3599 4516 1.375853 CTGCGGATGATTTTGCGGGA 61.376 55.000 0.00 0.00 0.00 5.14
3658 4580 7.396907 TCAATTATTCTTTTCTGGGCTGATTGA 59.603 33.333 0.00 0.00 0.00 2.57
3736 4670 7.663081 GCATCTCACCTTATTCTCAATGGAATA 59.337 37.037 0.00 0.00 37.20 1.75
3781 4715 3.009723 CAGACCGATGCCTTTGTTGTAT 58.990 45.455 0.00 0.00 0.00 2.29
3823 4757 4.572389 ACCGATTAATGATTGCACAGAGAC 59.428 41.667 0.00 0.00 0.00 3.36
3825 4759 5.295292 CCGATTAATGATTGCACAGAGACTT 59.705 40.000 0.00 0.00 0.00 3.01
3837 4771 0.605589 AGAGACTTGCTGAAGGTCGG 59.394 55.000 0.00 0.00 32.95 4.79
4004 4972 6.348540 GCCTTGTATTTTAGATTATCCCAGCG 60.349 42.308 0.00 0.00 0.00 5.18
4176 5155 4.451096 TGTTATCACGTTCTCCTTGCTTTC 59.549 41.667 0.00 0.00 0.00 2.62
4238 5224 0.692476 TGCTCTGTTGCTACCACCAT 59.308 50.000 0.00 0.00 0.00 3.55
4408 5394 0.179000 CTGTGTACATCCCTGGAGGC 59.821 60.000 0.00 0.00 34.51 4.70
4435 5421 0.108472 GCTCAAAGCTCCCAATTGGC 60.108 55.000 19.75 8.02 38.45 4.52
4436 5422 1.259609 CTCAAAGCTCCCAATTGGCA 58.740 50.000 19.75 2.69 0.00 4.92
4437 5423 1.203994 CTCAAAGCTCCCAATTGGCAG 59.796 52.381 19.75 15.61 0.00 4.85
4438 5424 1.203038 TCAAAGCTCCCAATTGGCAGA 60.203 47.619 20.16 11.16 0.00 4.26
4439 5425 1.203994 CAAAGCTCCCAATTGGCAGAG 59.796 52.381 20.16 20.42 0.00 3.35
4440 5426 0.407139 AAGCTCCCAATTGGCAGAGT 59.593 50.000 20.16 2.07 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.097547 GTGGCCAGGATTCACCATCG 61.098 60.000 5.11 0.00 42.04 3.84
55 56 7.648142 TCATTGTTTTTCTAAGTTGCCTACAG 58.352 34.615 0.00 0.00 0.00 2.74
167 168 0.249398 CCTACGGTTGCCTAGTTGCT 59.751 55.000 0.00 0.00 0.00 3.91
254 298 5.405935 ACTTCACTGCACTATGTGTATCA 57.594 39.130 4.00 0.00 35.75 2.15
255 299 5.446473 GCAACTTCACTGCACTATGTGTATC 60.446 44.000 4.00 0.00 39.69 2.24
256 300 4.393062 GCAACTTCACTGCACTATGTGTAT 59.607 41.667 4.00 0.00 39.69 2.29
257 301 3.745975 GCAACTTCACTGCACTATGTGTA 59.254 43.478 4.00 0.00 39.69 2.90
258 302 2.549754 GCAACTTCACTGCACTATGTGT 59.450 45.455 4.00 0.00 39.69 3.72
259 303 2.810274 AGCAACTTCACTGCACTATGTG 59.190 45.455 0.00 0.00 42.48 3.21
260 304 3.131709 AGCAACTTCACTGCACTATGT 57.868 42.857 0.00 0.00 42.48 2.29
261 305 4.224433 CAAAGCAACTTCACTGCACTATG 58.776 43.478 0.00 0.00 42.48 2.23
262 306 3.885297 ACAAAGCAACTTCACTGCACTAT 59.115 39.130 0.00 0.00 42.48 2.12
263 307 3.278574 ACAAAGCAACTTCACTGCACTA 58.721 40.909 0.00 0.00 42.48 2.74
264 308 2.094675 ACAAAGCAACTTCACTGCACT 58.905 42.857 0.00 0.00 42.48 4.40
265 309 2.566952 ACAAAGCAACTTCACTGCAC 57.433 45.000 0.00 0.00 42.48 4.57
266 310 3.631686 ACATACAAAGCAACTTCACTGCA 59.368 39.130 0.00 0.00 42.48 4.41
267 311 4.228912 ACATACAAAGCAACTTCACTGC 57.771 40.909 0.00 0.00 40.24 4.40
268 312 5.049474 TGCTACATACAAAGCAACTTCACTG 60.049 40.000 0.00 0.00 45.36 3.66
269 313 5.063204 TGCTACATACAAAGCAACTTCACT 58.937 37.500 0.00 0.00 45.36 3.41
270 314 5.356882 TGCTACATACAAAGCAACTTCAC 57.643 39.130 0.00 0.00 45.36 3.18
277 321 6.183360 GCATCTTTAGTGCTACATACAAAGCA 60.183 38.462 0.00 0.00 46.11 3.91
278 322 6.195165 GCATCTTTAGTGCTACATACAAAGC 58.805 40.000 0.00 0.00 39.45 3.51
290 334 7.382218 ACACAAAACATAAAGCATCTTTAGTGC 59.618 33.333 5.44 0.00 42.81 4.40
291 335 8.693504 CACACAAAACATAAAGCATCTTTAGTG 58.306 33.333 5.44 8.16 0.00 2.74
292 336 8.629158 TCACACAAAACATAAAGCATCTTTAGT 58.371 29.630 5.44 2.12 0.00 2.24
293 337 9.630098 ATCACACAAAACATAAAGCATCTTTAG 57.370 29.630 5.44 1.64 0.00 1.85
294 338 9.979578 AATCACACAAAACATAAAGCATCTTTA 57.020 25.926 2.02 2.02 0.00 1.85
295 339 8.891671 AATCACACAAAACATAAAGCATCTTT 57.108 26.923 0.00 0.00 0.00 2.52
296 340 8.891671 AAATCACACAAAACATAAAGCATCTT 57.108 26.923 0.00 0.00 0.00 2.40
297 341 8.891671 AAAATCACACAAAACATAAAGCATCT 57.108 26.923 0.00 0.00 0.00 2.90
337 381 7.094162 GCTATAGGGAAGCAACTTCTTCTTTTT 60.094 37.037 1.04 0.00 41.55 1.94
338 382 6.375736 GCTATAGGGAAGCAACTTCTTCTTTT 59.624 38.462 1.04 1.65 41.55 2.27
339 383 5.883115 GCTATAGGGAAGCAACTTCTTCTTT 59.117 40.000 1.04 4.26 41.55 2.52
340 384 5.045578 TGCTATAGGGAAGCAACTTCTTCTT 60.046 40.000 1.04 0.00 46.57 2.52
341 385 4.471386 TGCTATAGGGAAGCAACTTCTTCT 59.529 41.667 1.04 7.76 46.57 2.85
342 386 4.770795 TGCTATAGGGAAGCAACTTCTTC 58.229 43.478 1.04 0.00 46.57 2.87
343 387 4.844349 TGCTATAGGGAAGCAACTTCTT 57.156 40.909 1.04 0.05 46.57 2.52
351 395 5.586643 GGCAACTATAATGCTATAGGGAAGC 59.413 44.000 1.04 0.00 40.94 3.86
372 416 0.680618 CTTTGGTTGCAATGGAGGCA 59.319 50.000 0.59 0.00 40.00 4.75
373 417 0.681175 ACTTTGGTTGCAATGGAGGC 59.319 50.000 0.59 0.00 0.00 4.70
374 418 2.758009 CAACTTTGGTTGCAATGGAGG 58.242 47.619 0.59 0.00 44.83 4.30
405 449 9.599866 TCTCGTATGAATACATTTCATCAAACT 57.400 29.630 4.22 0.00 39.59 2.66
408 452 9.987272 AGATCTCGTATGAATACATTTCATCAA 57.013 29.630 4.22 0.00 39.59 2.57
421 465 9.355215 GTTCTTCAAAAGTAGATCTCGTATGAA 57.645 33.333 0.00 4.77 0.00 2.57
422 466 8.740906 AGTTCTTCAAAAGTAGATCTCGTATGA 58.259 33.333 0.00 0.00 0.00 2.15
423 467 8.918961 AGTTCTTCAAAAGTAGATCTCGTATG 57.081 34.615 0.00 0.00 0.00 2.39
424 468 7.911205 CGAGTTCTTCAAAAGTAGATCTCGTAT 59.089 37.037 17.73 0.00 45.99 3.06
425 469 7.242079 CGAGTTCTTCAAAAGTAGATCTCGTA 58.758 38.462 17.73 0.00 45.99 3.43
426 470 6.087522 CGAGTTCTTCAAAAGTAGATCTCGT 58.912 40.000 17.73 0.00 45.99 4.18
427 471 6.547493 CGAGTTCTTCAAAAGTAGATCTCG 57.453 41.667 14.38 14.38 45.94 4.04
428 472 6.249682 CGACGAGTTCTTCAAAAGTAGATCTC 59.750 42.308 0.00 0.00 35.41 2.75
429 473 6.087522 CGACGAGTTCTTCAAAAGTAGATCT 58.912 40.000 0.00 0.00 0.00 2.75
430 474 5.857517 ACGACGAGTTCTTCAAAAGTAGATC 59.142 40.000 0.00 0.00 0.00 2.75
431 475 5.770417 ACGACGAGTTCTTCAAAAGTAGAT 58.230 37.500 0.00 0.00 0.00 1.98
432 476 5.179045 ACGACGAGTTCTTCAAAAGTAGA 57.821 39.130 0.00 0.00 0.00 2.59
433 477 4.974275 TGACGACGAGTTCTTCAAAAGTAG 59.026 41.667 0.00 0.00 29.76 2.57
434 478 4.923893 TGACGACGAGTTCTTCAAAAGTA 58.076 39.130 0.00 0.00 29.76 2.24
435 479 3.777478 TGACGACGAGTTCTTCAAAAGT 58.223 40.909 0.00 0.00 29.76 2.66
436 480 4.042398 TCTGACGACGAGTTCTTCAAAAG 58.958 43.478 0.00 0.00 32.36 2.27
437 481 4.036567 TCTGACGACGAGTTCTTCAAAA 57.963 40.909 0.00 0.00 32.36 2.44
438 482 3.703286 TCTGACGACGAGTTCTTCAAA 57.297 42.857 0.00 0.00 32.36 2.69
439 483 3.703286 TTCTGACGACGAGTTCTTCAA 57.297 42.857 0.00 0.00 32.36 2.69
440 484 3.703286 TTTCTGACGACGAGTTCTTCA 57.297 42.857 0.00 0.00 31.87 3.02
441 485 4.477780 AGATTTCTGACGACGAGTTCTTC 58.522 43.478 0.00 0.00 0.00 2.87
442 486 4.506886 AGATTTCTGACGACGAGTTCTT 57.493 40.909 0.00 0.00 0.00 2.52
443 487 5.392165 CCTTAGATTTCTGACGACGAGTTCT 60.392 44.000 0.00 0.00 0.00 3.01
444 488 4.794246 CCTTAGATTTCTGACGACGAGTTC 59.206 45.833 0.00 0.00 0.00 3.01
445 489 4.217983 ACCTTAGATTTCTGACGACGAGTT 59.782 41.667 0.00 0.00 0.00 3.01
446 490 3.757493 ACCTTAGATTTCTGACGACGAGT 59.243 43.478 0.00 0.00 0.00 4.18
447 491 4.099120 CACCTTAGATTTCTGACGACGAG 58.901 47.826 0.00 0.00 0.00 4.18
448 492 3.754850 TCACCTTAGATTTCTGACGACGA 59.245 43.478 0.00 0.00 0.00 4.20
449 493 4.092771 TCACCTTAGATTTCTGACGACG 57.907 45.455 0.00 0.00 0.00 5.12
450 494 5.163943 GCTTTCACCTTAGATTTCTGACGAC 60.164 44.000 0.00 0.00 0.00 4.34
451 495 4.929808 GCTTTCACCTTAGATTTCTGACGA 59.070 41.667 0.00 0.00 0.00 4.20
452 496 4.201628 CGCTTTCACCTTAGATTTCTGACG 60.202 45.833 0.00 0.00 0.00 4.35
453 497 4.929808 TCGCTTTCACCTTAGATTTCTGAC 59.070 41.667 0.00 0.00 0.00 3.51
454 498 5.147330 TCGCTTTCACCTTAGATTTCTGA 57.853 39.130 0.00 0.00 0.00 3.27
455 499 5.862924 TTCGCTTTCACCTTAGATTTCTG 57.137 39.130 0.00 0.00 0.00 3.02
456 500 5.998363 AGTTTCGCTTTCACCTTAGATTTCT 59.002 36.000 0.00 0.00 0.00 2.52
457 501 6.073222 TCAGTTTCGCTTTCACCTTAGATTTC 60.073 38.462 0.00 0.00 0.00 2.17
458 502 5.763204 TCAGTTTCGCTTTCACCTTAGATTT 59.237 36.000 0.00 0.00 0.00 2.17
459 503 5.305585 TCAGTTTCGCTTTCACCTTAGATT 58.694 37.500 0.00 0.00 0.00 2.40
460 504 4.894784 TCAGTTTCGCTTTCACCTTAGAT 58.105 39.130 0.00 0.00 0.00 1.98
461 505 4.330944 TCAGTTTCGCTTTCACCTTAGA 57.669 40.909 0.00 0.00 0.00 2.10
462 506 5.613358 ATTCAGTTTCGCTTTCACCTTAG 57.387 39.130 0.00 0.00 0.00 2.18
463 507 6.385649 AAATTCAGTTTCGCTTTCACCTTA 57.614 33.333 0.00 0.00 0.00 2.69
464 508 4.918810 AATTCAGTTTCGCTTTCACCTT 57.081 36.364 0.00 0.00 0.00 3.50
465 509 4.918810 AAATTCAGTTTCGCTTTCACCT 57.081 36.364 0.00 0.00 0.00 4.00
466 510 5.040635 TCAAAATTCAGTTTCGCTTTCACC 58.959 37.500 0.00 0.00 0.00 4.02
467 511 6.575132 CATCAAAATTCAGTTTCGCTTTCAC 58.425 36.000 0.00 0.00 0.00 3.18
468 512 5.175491 GCATCAAAATTCAGTTTCGCTTTCA 59.825 36.000 0.00 0.00 0.00 2.69
469 513 5.403466 AGCATCAAAATTCAGTTTCGCTTTC 59.597 36.000 0.00 0.00 0.00 2.62
470 514 5.291971 AGCATCAAAATTCAGTTTCGCTTT 58.708 33.333 0.00 0.00 0.00 3.51
471 515 4.874970 AGCATCAAAATTCAGTTTCGCTT 58.125 34.783 0.00 0.00 0.00 4.68
472 516 4.510038 AGCATCAAAATTCAGTTTCGCT 57.490 36.364 0.00 0.00 0.00 4.93
473 517 4.681025 TCAAGCATCAAAATTCAGTTTCGC 59.319 37.500 0.00 0.00 0.00 4.70
474 518 6.752335 TTCAAGCATCAAAATTCAGTTTCG 57.248 33.333 0.00 0.00 0.00 3.46
475 519 7.326789 TCGATTCAAGCATCAAAATTCAGTTTC 59.673 33.333 0.00 0.00 0.00 2.78
476 520 7.147312 TCGATTCAAGCATCAAAATTCAGTTT 58.853 30.769 0.00 0.00 0.00 2.66
477 521 6.680810 TCGATTCAAGCATCAAAATTCAGTT 58.319 32.000 0.00 0.00 0.00 3.16
478 522 6.258230 TCGATTCAAGCATCAAAATTCAGT 57.742 33.333 0.00 0.00 0.00 3.41
479 523 7.327761 ACTTTCGATTCAAGCATCAAAATTCAG 59.672 33.333 0.00 0.00 0.00 3.02
480 524 7.147312 ACTTTCGATTCAAGCATCAAAATTCA 58.853 30.769 0.00 0.00 0.00 2.57
481 525 7.572502 ACTTTCGATTCAAGCATCAAAATTC 57.427 32.000 0.00 0.00 0.00 2.17
482 526 7.951530 AACTTTCGATTCAAGCATCAAAATT 57.048 28.000 0.00 0.00 0.00 1.82
483 527 9.079833 CATAACTTTCGATTCAAGCATCAAAAT 57.920 29.630 0.00 0.00 0.00 1.82
484 528 7.062138 GCATAACTTTCGATTCAAGCATCAAAA 59.938 33.333 0.00 0.00 0.00 2.44
485 529 6.527722 GCATAACTTTCGATTCAAGCATCAAA 59.472 34.615 0.00 0.00 0.00 2.69
486 530 6.029607 GCATAACTTTCGATTCAAGCATCAA 58.970 36.000 0.00 0.00 0.00 2.57
487 531 5.449041 GGCATAACTTTCGATTCAAGCATCA 60.449 40.000 0.00 0.00 0.00 3.07
488 532 4.972440 GGCATAACTTTCGATTCAAGCATC 59.028 41.667 0.00 0.00 0.00 3.91
489 533 4.641989 AGGCATAACTTTCGATTCAAGCAT 59.358 37.500 0.00 0.00 0.00 3.79
490 534 4.009675 AGGCATAACTTTCGATTCAAGCA 58.990 39.130 0.00 0.00 0.00 3.91
491 535 4.622701 AGGCATAACTTTCGATTCAAGC 57.377 40.909 0.00 0.00 0.00 4.01
492 536 8.020819 TGTAAAAGGCATAACTTTCGATTCAAG 58.979 33.333 0.00 0.00 39.63 3.02
493 537 7.877003 TGTAAAAGGCATAACTTTCGATTCAA 58.123 30.769 0.00 0.00 39.63 2.69
494 538 7.441890 TGTAAAAGGCATAACTTTCGATTCA 57.558 32.000 0.00 0.00 39.63 2.57
495 539 8.021396 AGTTGTAAAAGGCATAACTTTCGATTC 58.979 33.333 0.00 0.00 39.63 2.52
496 540 7.882179 AGTTGTAAAAGGCATAACTTTCGATT 58.118 30.769 0.00 0.00 39.63 3.34
497 541 7.448748 AGTTGTAAAAGGCATAACTTTCGAT 57.551 32.000 0.00 0.00 39.63 3.59
498 542 6.870971 AGTTGTAAAAGGCATAACTTTCGA 57.129 33.333 0.00 0.00 39.63 3.71
499 543 7.924103 AAAGTTGTAAAAGGCATAACTTTCG 57.076 32.000 0.00 0.00 43.94 3.46
503 547 9.961265 GTTTAGAAAGTTGTAAAAGGCATAACT 57.039 29.630 0.00 0.00 33.36 2.24
504 548 9.188588 GGTTTAGAAAGTTGTAAAAGGCATAAC 57.811 33.333 0.00 0.00 29.31 1.89
505 549 9.138596 AGGTTTAGAAAGTTGTAAAAGGCATAA 57.861 29.630 0.00 0.00 29.31 1.90
506 550 8.700439 AGGTTTAGAAAGTTGTAAAAGGCATA 57.300 30.769 0.00 0.00 29.31 3.14
507 551 7.286775 TGAGGTTTAGAAAGTTGTAAAAGGCAT 59.713 33.333 0.00 0.00 29.31 4.40
508 552 6.603997 TGAGGTTTAGAAAGTTGTAAAAGGCA 59.396 34.615 0.00 0.00 29.31 4.75
509 553 7.034685 TGAGGTTTAGAAAGTTGTAAAAGGC 57.965 36.000 0.00 0.00 29.31 4.35
516 560 9.476202 GCATTTATTTGAGGTTTAGAAAGTTGT 57.524 29.630 0.00 0.00 0.00 3.32
517 561 9.474920 TGCATTTATTTGAGGTTTAGAAAGTTG 57.525 29.630 0.00 0.00 0.00 3.16
524 568 9.533253 CCCTAAATGCATTTATTTGAGGTTTAG 57.467 33.333 27.56 15.27 32.36 1.85
525 569 9.261035 TCCCTAAATGCATTTATTTGAGGTTTA 57.739 29.630 27.56 13.73 32.36 2.01
526 570 8.144862 TCCCTAAATGCATTTATTTGAGGTTT 57.855 30.769 27.56 5.65 32.36 3.27
527 571 7.732222 TCCCTAAATGCATTTATTTGAGGTT 57.268 32.000 27.56 5.38 32.36 3.50
528 572 7.919385 ATCCCTAAATGCATTTATTTGAGGT 57.081 32.000 27.56 12.17 32.36 3.85
529 573 8.526147 CCTATCCCTAAATGCATTTATTTGAGG 58.474 37.037 27.56 25.02 32.36 3.86
530 574 9.300681 TCCTATCCCTAAATGCATTTATTTGAG 57.699 33.333 27.56 18.80 32.36 3.02
531 575 9.827198 ATCCTATCCCTAAATGCATTTATTTGA 57.173 29.630 27.56 22.79 32.36 2.69
537 581 9.301897 GTCTAAATCCTATCCCTAAATGCATTT 57.698 33.333 26.72 26.72 0.00 2.32
538 582 8.673251 AGTCTAAATCCTATCCCTAAATGCATT 58.327 33.333 5.99 5.99 0.00 3.56
539 583 8.105829 CAGTCTAAATCCTATCCCTAAATGCAT 58.894 37.037 0.00 0.00 0.00 3.96
540 584 7.292356 TCAGTCTAAATCCTATCCCTAAATGCA 59.708 37.037 0.00 0.00 0.00 3.96
541 585 7.680730 TCAGTCTAAATCCTATCCCTAAATGC 58.319 38.462 0.00 0.00 0.00 3.56
544 588 9.447279 TGAATCAGTCTAAATCCTATCCCTAAA 57.553 33.333 0.00 0.00 0.00 1.85
545 589 9.447279 TTGAATCAGTCTAAATCCTATCCCTAA 57.553 33.333 0.00 0.00 0.00 2.69
546 590 9.621239 ATTGAATCAGTCTAAATCCTATCCCTA 57.379 33.333 0.00 0.00 0.00 3.53
547 591 7.937700 TTGAATCAGTCTAAATCCTATCCCT 57.062 36.000 0.00 0.00 0.00 4.20
548 592 7.547370 CGATTGAATCAGTCTAAATCCTATCCC 59.453 40.741 5.95 0.00 0.00 3.85
549 593 7.547370 CCGATTGAATCAGTCTAAATCCTATCC 59.453 40.741 5.95 0.00 0.00 2.59
550 594 7.064016 GCCGATTGAATCAGTCTAAATCCTATC 59.936 40.741 5.95 0.00 0.00 2.08
551 595 6.876257 GCCGATTGAATCAGTCTAAATCCTAT 59.124 38.462 5.95 0.00 0.00 2.57
552 596 6.183360 TGCCGATTGAATCAGTCTAAATCCTA 60.183 38.462 5.95 0.00 0.00 2.94
553 597 5.059833 GCCGATTGAATCAGTCTAAATCCT 58.940 41.667 5.95 0.00 0.00 3.24
554 598 4.816385 TGCCGATTGAATCAGTCTAAATCC 59.184 41.667 5.95 0.00 0.00 3.01
555 599 5.991328 TGCCGATTGAATCAGTCTAAATC 57.009 39.130 5.95 0.00 0.00 2.17
556 600 5.471456 GGATGCCGATTGAATCAGTCTAAAT 59.529 40.000 5.95 0.00 0.00 1.40
557 601 4.816385 GGATGCCGATTGAATCAGTCTAAA 59.184 41.667 5.95 0.00 0.00 1.85
558 602 4.141733 TGGATGCCGATTGAATCAGTCTAA 60.142 41.667 5.95 0.00 0.00 2.10
559 603 3.387699 TGGATGCCGATTGAATCAGTCTA 59.612 43.478 5.95 0.00 0.00 2.59
560 604 2.171237 TGGATGCCGATTGAATCAGTCT 59.829 45.455 5.95 0.00 0.00 3.24
561 605 2.564771 TGGATGCCGATTGAATCAGTC 58.435 47.619 5.95 0.00 0.00 3.51
562 606 2.715749 TGGATGCCGATTGAATCAGT 57.284 45.000 5.95 0.00 0.00 3.41
563 607 5.231265 CATATGGATGCCGATTGAATCAG 57.769 43.478 5.95 0.00 0.00 2.90
580 624 1.159285 CACACCCCATAGCGCATATG 58.841 55.000 11.47 14.26 40.96 1.78
581 625 0.036732 CCACACCCCATAGCGCATAT 59.963 55.000 11.47 1.45 0.00 1.78
582 626 1.449782 CCACACCCCATAGCGCATA 59.550 57.895 11.47 0.00 0.00 3.14
583 627 2.192979 CCACACCCCATAGCGCAT 59.807 61.111 11.47 0.00 0.00 4.73
584 628 4.794648 GCCACACCCCATAGCGCA 62.795 66.667 11.47 0.00 0.00 6.09
586 630 3.636929 TTGGCCACACCCCATAGCG 62.637 63.158 3.88 0.00 37.83 4.26
587 631 1.754234 CTTGGCCACACCCCATAGC 60.754 63.158 3.88 0.00 37.83 2.97
588 632 1.754234 GCTTGGCCACACCCCATAG 60.754 63.158 3.88 0.00 37.83 2.23
589 633 2.086599 TTGCTTGGCCACACCCCATA 62.087 55.000 3.88 0.00 37.83 2.74
590 634 2.752036 ATTGCTTGGCCACACCCCAT 62.752 55.000 3.88 0.00 37.83 4.00
591 635 2.961559 AATTGCTTGGCCACACCCCA 62.962 55.000 3.88 0.00 37.83 4.96
592 636 1.767654 AAATTGCTTGGCCACACCCC 61.768 55.000 3.88 0.00 37.83 4.95
593 637 0.108396 AAAATTGCTTGGCCACACCC 59.892 50.000 3.88 0.00 37.83 4.61
594 638 1.965935 AAAAATTGCTTGGCCACACC 58.034 45.000 3.88 0.00 39.84 4.16
613 657 4.514781 TCTGCTGTCTACGCTAGAAAAA 57.485 40.909 0.00 0.00 36.40 1.94
614 658 4.235360 GTTCTGCTGTCTACGCTAGAAAA 58.765 43.478 0.00 0.00 36.40 2.29
615 659 3.254903 TGTTCTGCTGTCTACGCTAGAAA 59.745 43.478 0.00 0.00 36.40 2.52
616 660 2.817844 TGTTCTGCTGTCTACGCTAGAA 59.182 45.455 0.00 0.00 36.40 2.10
617 661 2.420372 CTGTTCTGCTGTCTACGCTAGA 59.580 50.000 0.00 0.00 0.00 2.43
618 662 2.420372 TCTGTTCTGCTGTCTACGCTAG 59.580 50.000 0.00 0.00 0.00 3.42
619 663 2.433436 TCTGTTCTGCTGTCTACGCTA 58.567 47.619 0.00 0.00 0.00 4.26
620 664 1.248486 TCTGTTCTGCTGTCTACGCT 58.752 50.000 0.00 0.00 0.00 5.07
621 665 1.989165 CTTCTGTTCTGCTGTCTACGC 59.011 52.381 0.00 0.00 0.00 4.42
622 666 2.229062 TCCTTCTGTTCTGCTGTCTACG 59.771 50.000 0.00 0.00 0.00 3.51
623 667 3.005897 TGTCCTTCTGTTCTGCTGTCTAC 59.994 47.826 0.00 0.00 0.00 2.59
624 668 3.230976 TGTCCTTCTGTTCTGCTGTCTA 58.769 45.455 0.00 0.00 0.00 2.59
625 669 2.042464 TGTCCTTCTGTTCTGCTGTCT 58.958 47.619 0.00 0.00 0.00 3.41
626 670 2.533266 TGTCCTTCTGTTCTGCTGTC 57.467 50.000 0.00 0.00 0.00 3.51
627 671 2.775890 CATGTCCTTCTGTTCTGCTGT 58.224 47.619 0.00 0.00 0.00 4.40
628 672 1.467734 GCATGTCCTTCTGTTCTGCTG 59.532 52.381 0.00 0.00 0.00 4.41
629 673 1.072806 TGCATGTCCTTCTGTTCTGCT 59.927 47.619 0.00 0.00 0.00 4.24
630 674 1.198637 GTGCATGTCCTTCTGTTCTGC 59.801 52.381 0.00 0.00 0.00 4.26
631 675 2.775890 AGTGCATGTCCTTCTGTTCTG 58.224 47.619 0.00 0.00 0.00 3.02
632 676 3.498774 AAGTGCATGTCCTTCTGTTCT 57.501 42.857 0.00 0.00 0.00 3.01
633 677 4.319177 AGTAAGTGCATGTCCTTCTGTTC 58.681 43.478 0.00 0.00 0.00 3.18
634 678 4.357918 AGTAAGTGCATGTCCTTCTGTT 57.642 40.909 0.00 0.00 0.00 3.16
635 679 5.683876 ATAGTAAGTGCATGTCCTTCTGT 57.316 39.130 0.00 0.00 0.00 3.41
636 680 7.539022 CGTATATAGTAAGTGCATGTCCTTCTG 59.461 40.741 0.00 0.00 0.00 3.02
637 681 7.309255 CCGTATATAGTAAGTGCATGTCCTTCT 60.309 40.741 0.00 0.48 0.00 2.85
638 682 6.807230 CCGTATATAGTAAGTGCATGTCCTTC 59.193 42.308 0.00 0.00 0.00 3.46
639 683 6.688578 CCGTATATAGTAAGTGCATGTCCTT 58.311 40.000 0.00 0.00 0.00 3.36
640 684 5.336531 GCCGTATATAGTAAGTGCATGTCCT 60.337 44.000 0.00 0.00 0.00 3.85
641 685 4.863131 GCCGTATATAGTAAGTGCATGTCC 59.137 45.833 0.00 0.00 0.00 4.02
642 686 4.557690 CGCCGTATATAGTAAGTGCATGTC 59.442 45.833 0.00 0.00 0.00 3.06
643 687 4.216902 TCGCCGTATATAGTAAGTGCATGT 59.783 41.667 0.00 0.00 0.00 3.21
644 688 4.729595 TCGCCGTATATAGTAAGTGCATG 58.270 43.478 0.00 0.00 0.00 4.06
645 689 5.340803 CATCGCCGTATATAGTAAGTGCAT 58.659 41.667 0.00 0.00 0.00 3.96
646 690 4.729595 CATCGCCGTATATAGTAAGTGCA 58.270 43.478 0.00 0.00 0.00 4.57
647 691 3.546670 GCATCGCCGTATATAGTAAGTGC 59.453 47.826 0.00 0.00 0.00 4.40
648 692 3.784468 CGCATCGCCGTATATAGTAAGTG 59.216 47.826 0.00 0.00 0.00 3.16
649 693 4.012319 CGCATCGCCGTATATAGTAAGT 57.988 45.455 0.00 0.00 0.00 2.24
664 708 0.040514 TTGTTGTTTGGAGCGCATCG 60.041 50.000 11.47 0.00 0.00 3.84
665 709 2.053627 CTTTGTTGTTTGGAGCGCATC 58.946 47.619 11.47 4.01 0.00 3.91
666 710 1.269726 CCTTTGTTGTTTGGAGCGCAT 60.270 47.619 11.47 0.00 0.00 4.73
667 711 0.102120 CCTTTGTTGTTTGGAGCGCA 59.898 50.000 11.47 0.00 0.00 6.09
668 712 0.383949 TCCTTTGTTGTTTGGAGCGC 59.616 50.000 0.00 0.00 0.00 5.92
669 713 2.405892 CTCCTTTGTTGTTTGGAGCG 57.594 50.000 0.00 0.00 39.46 5.03
671 715 1.600413 GCGCTCCTTTGTTGTTTGGAG 60.600 52.381 0.00 0.00 46.38 3.86
672 716 0.383949 GCGCTCCTTTGTTGTTTGGA 59.616 50.000 0.00 0.00 0.00 3.53
673 717 0.102120 TGCGCTCCTTTGTTGTTTGG 59.898 50.000 9.73 0.00 0.00 3.28
674 718 1.480205 CTGCGCTCCTTTGTTGTTTG 58.520 50.000 9.73 0.00 0.00 2.93
675 719 0.249031 GCTGCGCTCCTTTGTTGTTT 60.249 50.000 9.73 0.00 0.00 2.83
676 720 1.360192 GCTGCGCTCCTTTGTTGTT 59.640 52.632 9.73 0.00 0.00 2.83
677 721 2.896801 CGCTGCGCTCCTTTGTTGT 61.897 57.895 9.88 0.00 0.00 3.32
678 722 2.127118 CGCTGCGCTCCTTTGTTG 60.127 61.111 9.88 0.00 0.00 3.33
679 723 3.357079 CCGCTGCGCTCCTTTGTT 61.357 61.111 18.00 0.00 0.00 2.83
691 735 3.195698 GGTTAAGGAGCGCCGCTG 61.196 66.667 20.07 0.00 39.88 5.18
692 736 3.702048 TGGTTAAGGAGCGCCGCT 61.702 61.111 13.40 13.40 43.88 5.52
693 737 3.497031 GTGGTTAAGGAGCGCCGC 61.497 66.667 2.29 0.00 39.96 6.53
694 738 2.818274 GGTGGTTAAGGAGCGCCG 60.818 66.667 2.29 0.00 45.50 6.46
696 740 0.461516 GGTAGGTGGTTAAGGAGCGC 60.462 60.000 0.00 0.00 35.56 5.92
697 741 0.899720 TGGTAGGTGGTTAAGGAGCG 59.100 55.000 0.00 0.00 0.00 5.03
698 742 2.238898 ACATGGTAGGTGGTTAAGGAGC 59.761 50.000 0.00 0.00 0.00 4.70
699 743 4.569719 AACATGGTAGGTGGTTAAGGAG 57.430 45.455 0.00 0.00 0.00 3.69
700 744 4.600111 AGAAACATGGTAGGTGGTTAAGGA 59.400 41.667 0.00 0.00 0.00 3.36
701 745 4.918588 AGAAACATGGTAGGTGGTTAAGG 58.081 43.478 0.00 0.00 0.00 2.69
702 746 5.414765 GGAAGAAACATGGTAGGTGGTTAAG 59.585 44.000 0.00 0.00 0.00 1.85
703 747 5.318630 GGAAGAAACATGGTAGGTGGTTAA 58.681 41.667 0.00 0.00 0.00 2.01
704 748 4.263594 GGGAAGAAACATGGTAGGTGGTTA 60.264 45.833 0.00 0.00 0.00 2.85
705 749 3.499745 GGGAAGAAACATGGTAGGTGGTT 60.500 47.826 0.00 0.00 0.00 3.67
706 750 2.041216 GGGAAGAAACATGGTAGGTGGT 59.959 50.000 0.00 0.00 0.00 4.16
707 751 2.308866 AGGGAAGAAACATGGTAGGTGG 59.691 50.000 0.00 0.00 0.00 4.61
708 752 3.721087 AGGGAAGAAACATGGTAGGTG 57.279 47.619 0.00 0.00 0.00 4.00
709 753 3.010250 GGAAGGGAAGAAACATGGTAGGT 59.990 47.826 0.00 0.00 0.00 3.08
710 754 3.010138 TGGAAGGGAAGAAACATGGTAGG 59.990 47.826 0.00 0.00 0.00 3.18
711 755 4.301072 TGGAAGGGAAGAAACATGGTAG 57.699 45.455 0.00 0.00 0.00 3.18
712 756 4.946160 ATGGAAGGGAAGAAACATGGTA 57.054 40.909 0.00 0.00 0.00 3.25
713 757 3.833559 ATGGAAGGGAAGAAACATGGT 57.166 42.857 0.00 0.00 0.00 3.55
749 793 0.110599 CGAATTTACGTTGCGGCACA 60.111 50.000 0.05 0.00 0.00 4.57
753 797 2.048316 CGTACGAATTTACGTTGCGG 57.952 50.000 10.44 0.00 44.14 5.69
828 872 2.202932 GGATGGTGAGCGATGCGT 60.203 61.111 0.00 0.00 0.00 5.24
829 873 1.563435 GATGGATGGTGAGCGATGCG 61.563 60.000 0.00 0.00 0.00 4.73
830 874 1.233285 GGATGGATGGTGAGCGATGC 61.233 60.000 0.00 0.00 0.00 3.91
831 875 0.107268 TGGATGGATGGTGAGCGATG 59.893 55.000 0.00 0.00 0.00 3.84
832 876 1.002888 GATGGATGGATGGTGAGCGAT 59.997 52.381 0.00 0.00 0.00 4.58
834 878 0.395686 AGATGGATGGATGGTGAGCG 59.604 55.000 0.00 0.00 0.00 5.03
835 879 1.271271 GGAGATGGATGGATGGTGAGC 60.271 57.143 0.00 0.00 0.00 4.26
836 880 2.052468 TGGAGATGGATGGATGGTGAG 58.948 52.381 0.00 0.00 0.00 3.51
837 881 2.195153 TGGAGATGGATGGATGGTGA 57.805 50.000 0.00 0.00 0.00 4.02
839 883 4.335735 TTTTTGGAGATGGATGGATGGT 57.664 40.909 0.00 0.00 0.00 3.55
850 919 6.524734 GGTGAAAGTTTGGATTTTTGGAGAT 58.475 36.000 0.00 0.00 0.00 2.75
888 965 0.465460 ATTCCTCTCGCTCTCGCTCT 60.465 55.000 0.00 0.00 35.26 4.09
889 966 1.231221 TATTCCTCTCGCTCTCGCTC 58.769 55.000 0.00 0.00 35.26 5.03
890 967 1.681538 TTATTCCTCTCGCTCTCGCT 58.318 50.000 0.00 0.00 35.26 4.93
891 968 2.493713 TTTATTCCTCTCGCTCTCGC 57.506 50.000 0.00 0.00 35.26 5.03
892 969 3.799420 CCTTTTTATTCCTCTCGCTCTCG 59.201 47.826 0.00 0.00 0.00 4.04
893 970 4.806775 GTCCTTTTTATTCCTCTCGCTCTC 59.193 45.833 0.00 0.00 0.00 3.20
894 971 4.678309 CGTCCTTTTTATTCCTCTCGCTCT 60.678 45.833 0.00 0.00 0.00 4.09
895 972 3.552294 CGTCCTTTTTATTCCTCTCGCTC 59.448 47.826 0.00 0.00 0.00 5.03
896 973 3.522553 CGTCCTTTTTATTCCTCTCGCT 58.477 45.455 0.00 0.00 0.00 4.93
897 974 2.608090 CCGTCCTTTTTATTCCTCTCGC 59.392 50.000 0.00 0.00 0.00 5.03
1098 1182 4.529219 ATCTGCGATGGCGGCGAA 62.529 61.111 12.98 0.00 45.50 4.70
1107 1200 1.736586 GTCCTCCGACATCTGCGAT 59.263 57.895 0.00 0.00 38.99 4.58
1130 1223 4.415332 TGCCGGAAGAGTCGTCGC 62.415 66.667 5.05 0.04 0.00 5.19
1584 1689 0.836400 TGAAGAGCGGGAAGGACCTT 60.836 55.000 6.40 6.40 38.98 3.50
1679 1784 1.194772 CGCAAAGACGAGAAAGGGAAC 59.805 52.381 0.00 0.00 34.06 3.62
1742 2133 1.612950 AGTGAACAAATGCGCCAATGA 59.387 42.857 4.18 0.00 0.00 2.57
1851 2584 7.565190 TTGCCTAGATAAGATTCTGATCCAT 57.435 36.000 7.33 0.00 32.44 3.41
1874 2607 4.141869 CCCAGCAAGGCAATAAAAGCTATT 60.142 41.667 0.00 0.00 35.39 1.73
2009 2777 9.476202 AACCATAACAGAAAAACTATCAAAAGC 57.524 29.630 0.00 0.00 0.00 3.51
2018 2786 6.909550 TGCCATAACCATAACAGAAAAACT 57.090 33.333 0.00 0.00 0.00 2.66
2024 2792 8.052748 AGAACTATTTGCCATAACCATAACAGA 58.947 33.333 0.00 0.00 0.00 3.41
2025 2793 8.225603 AGAACTATTTGCCATAACCATAACAG 57.774 34.615 0.00 0.00 0.00 3.16
2108 2954 5.046878 TCCAGTACTCGAAGATGCCTAAAAA 60.047 40.000 0.00 0.00 33.89 1.94
2166 3015 4.361783 TGGAGATCCAATCCACTACTTCA 58.638 43.478 0.00 0.00 44.35 3.02
2304 3153 1.996898 GACACATGGTCATTAACGCGA 59.003 47.619 15.93 0.00 46.19 5.87
2803 3694 0.107214 GAATCCTCGGTGGCATCCAA 60.107 55.000 0.00 0.00 34.18 3.53
2876 3767 7.086376 GCAAAAGTAGAGAATTGATTCAAGCA 58.914 34.615 5.21 0.00 39.23 3.91
3180 4071 1.822186 GCACCCCTCAAACACGTGT 60.822 57.895 17.22 17.22 0.00 4.49
3501 4418 6.878923 CAGGAATAGTAGAACAAACATGACCA 59.121 38.462 0.00 0.00 0.00 4.02
3525 4442 4.256110 CAGGAATACAACAGCAGTGATCA 58.744 43.478 0.00 0.00 0.00 2.92
3531 4448 4.516698 ACTTGAACAGGAATACAACAGCAG 59.483 41.667 0.00 0.00 0.00 4.24
3581 4498 0.962855 TTCCCGCAAAATCATCCGCA 60.963 50.000 0.00 0.00 0.00 5.69
3595 4512 8.991243 ATTAAATGATGCATTCATATTTCCCG 57.009 30.769 0.00 0.00 44.51 5.14
3629 4551 6.891361 TCAGCCCAGAAAAGAATAATTGATGA 59.109 34.615 0.00 0.00 0.00 2.92
3658 4580 2.225963 CGTACAGGTTCAAGTCTCGACT 59.774 50.000 0.00 0.00 44.94 4.18
3736 4670 4.082026 GTGCTGGCCAGAAAAATAACTCAT 60.082 41.667 37.21 0.00 0.00 2.90
3765 4699 5.991328 ACTATGATACAACAAAGGCATCG 57.009 39.130 0.00 0.00 0.00 3.84
3781 4715 3.613193 CGGTTCCGACAACTCAACTATGA 60.613 47.826 5.19 0.00 0.00 2.15
3808 4742 2.747989 CAGCAAGTCTCTGTGCAATCAT 59.252 45.455 0.00 0.00 43.42 2.45
3823 4757 1.743252 GGAGCCGACCTTCAGCAAG 60.743 63.158 0.00 0.00 0.00 4.01
3825 4759 1.841302 ATTGGAGCCGACCTTCAGCA 61.841 55.000 0.00 0.00 28.56 4.41
3837 4771 1.099879 ATCTGCTGCCGAATTGGAGC 61.100 55.000 0.00 2.75 42.00 4.70
4004 4972 9.639601 AAAAATGGGAAGAGAAAATTTATCGTC 57.360 29.630 7.56 7.56 0.00 4.20
4176 5155 2.028839 TCATGGCAAATGAACAGGCAAG 60.029 45.455 0.00 0.00 41.29 4.01
4364 5350 3.479866 AGGATGAAAAGGCAAATCCCT 57.520 42.857 0.00 0.00 39.60 4.20
4435 5421 1.605710 CTTGTGGAAGGTGCAACTCTG 59.394 52.381 3.77 0.00 36.74 3.35
4436 5422 1.477558 CCTTGTGGAAGGTGCAACTCT 60.478 52.381 3.77 0.00 43.63 3.24
4437 5423 0.954452 CCTTGTGGAAGGTGCAACTC 59.046 55.000 3.77 0.00 43.63 3.01
4438 5424 3.116091 CCTTGTGGAAGGTGCAACT 57.884 52.632 0.00 0.00 43.63 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.