Multiple sequence alignment - TraesCS6B01G345500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G345500 chr6B 100.000 2315 0 0 1 2315 609077493 609075179 0.000000e+00 4276
1 TraesCS6B01G345500 chr6D 92.962 1222 47 13 672 1877 405120837 405119639 0.000000e+00 1744
2 TraesCS6B01G345500 chr6D 89.292 551 54 5 130 679 405121604 405121058 0.000000e+00 686
3 TraesCS6B01G345500 chr6D 90.160 437 43 0 1876 2312 79725616 79726052 9.280000e-159 569
4 TraesCS6B01G345500 chr6D 91.667 84 7 0 1 84 405121672 405121589 1.450000e-22 117
5 TraesCS6B01G345500 chr6A 93.585 982 46 9 689 1656 551656218 551655240 0.000000e+00 1448
6 TraesCS6B01G345500 chr6A 86.796 568 69 6 130 695 551657002 551656439 1.510000e-176 628
7 TraesCS6B01G345500 chr6A 85.491 448 56 4 1876 2315 47464098 47464544 2.100000e-125 459
8 TraesCS6B01G345500 chr6A 89.268 205 16 5 1654 1858 551655160 551654962 3.820000e-63 252
9 TraesCS6B01G345500 chr6A 95.238 84 4 0 1 84 551657070 551656987 1.440000e-27 134
10 TraesCS6B01G345500 chr5B 90.766 444 41 0 1872 2315 176228781 176228338 5.510000e-166 593
11 TraesCS6B01G345500 chr5B 80.866 554 99 6 130 679 276188686 276188136 1.640000e-116 429
12 TraesCS6B01G345500 chr1A 90.455 440 28 5 1876 2315 364641131 364640706 3.340000e-158 568
13 TraesCS6B01G345500 chr1A 96.774 62 2 0 23 84 356607892 356607953 1.130000e-18 104
14 TraesCS6B01G345500 chrUn 89.091 440 47 1 1876 2315 27080280 27079842 1.560000e-151 545
15 TraesCS6B01G345500 chr7B 83.274 562 79 12 130 684 387636297 387636850 9.550000e-139 503
16 TraesCS6B01G345500 chr4D 83.243 555 83 9 131 679 323531345 323530795 3.430000e-138 501
17 TraesCS6B01G345500 chr4D 96.774 62 2 0 23 84 118429003 118428942 1.130000e-18 104
18 TraesCS6B01G345500 chr1B 82.111 559 90 9 131 684 269555840 269555287 9.680000e-129 470
19 TraesCS6B01G345500 chr3D 85.057 435 41 7 1876 2310 513465503 513465913 2.750000e-114 422
20 TraesCS6B01G345500 chr3D 84.368 435 44 7 1876 2310 513505833 513506243 2.770000e-109 405
21 TraesCS6B01G345500 chr2B 80.686 554 98 7 130 682 562771414 562770869 2.750000e-114 422
22 TraesCS6B01G345500 chr2B 79.846 521 90 14 171 684 54579365 54578853 1.310000e-97 366
23 TraesCS6B01G345500 chr2B 95.652 69 2 1 19 86 746810954 746811022 2.430000e-20 110
24 TraesCS6B01G345500 chr4B 79.159 547 103 10 130 672 594881999 594882538 3.630000e-98 368
25 TraesCS6B01G345500 chr4A 98.387 62 1 0 22 83 461215466 461215405 2.430000e-20 110
26 TraesCS6B01G345500 chr5D 94.286 70 4 0 17 86 499029917 499029986 8.750000e-20 108
27 TraesCS6B01G345500 chr2D 96.825 63 2 0 22 84 316264151 316264089 3.150000e-19 106
28 TraesCS6B01G345500 chr2A 91.549 71 6 0 16 86 580074503 580074573 5.260000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G345500 chr6B 609075179 609077493 2314 True 4276.0 4276 100.00000 1 2315 1 chr6B.!!$R1 2314
1 TraesCS6B01G345500 chr6D 405119639 405121672 2033 True 849.0 1744 91.30700 1 1877 3 chr6D.!!$R1 1876
2 TraesCS6B01G345500 chr6A 551654962 551657070 2108 True 615.5 1448 91.22175 1 1858 4 chr6A.!!$R1 1857
3 TraesCS6B01G345500 chr5B 276188136 276188686 550 True 429.0 429 80.86600 130 679 1 chr5B.!!$R2 549
4 TraesCS6B01G345500 chr7B 387636297 387636850 553 False 503.0 503 83.27400 130 684 1 chr7B.!!$F1 554
5 TraesCS6B01G345500 chr4D 323530795 323531345 550 True 501.0 501 83.24300 131 679 1 chr4D.!!$R2 548
6 TraesCS6B01G345500 chr1B 269555287 269555840 553 True 470.0 470 82.11100 131 684 1 chr1B.!!$R1 553
7 TraesCS6B01G345500 chr2B 562770869 562771414 545 True 422.0 422 80.68600 130 682 1 chr2B.!!$R2 552
8 TraesCS6B01G345500 chr2B 54578853 54579365 512 True 366.0 366 79.84600 171 684 1 chr2B.!!$R1 513
9 TraesCS6B01G345500 chr4B 594881999 594882538 539 False 368.0 368 79.15900 130 672 1 chr4B.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 531 0.252057 TCTTCCGTGGTCCCATCTGA 60.252 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2224 2562 0.0293 GCTTCGCACAGCTTTGACAA 59.971 50.0 3.47 0.0 36.79 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.362717 TCCACTGATACATCTCCAACGTATT 59.637 40.000 0.00 0.00 0.00 1.89
93 94 7.756395 ATATTATCAATCTTGAAGCCACCTG 57.244 36.000 0.00 0.00 41.13 4.00
94 95 2.205022 TCAATCTTGAAGCCACCTGG 57.795 50.000 0.00 0.00 33.55 4.45
95 96 1.887956 TCAATCTTGAAGCCACCTGGC 60.888 52.381 8.38 8.38 46.31 4.85
107 108 2.034687 CCTGGCAAGGGTGGTCAG 59.965 66.667 0.00 0.00 40.27 3.51
108 109 2.674380 CTGGCAAGGGTGGTCAGC 60.674 66.667 0.00 0.00 0.00 4.26
109 110 4.641645 TGGCAAGGGTGGTCAGCG 62.642 66.667 0.00 0.00 0.00 5.18
110 111 4.329545 GGCAAGGGTGGTCAGCGA 62.330 66.667 0.00 0.00 0.00 4.93
111 112 2.045926 GCAAGGGTGGTCAGCGAT 60.046 61.111 0.00 0.00 0.00 4.58
112 113 2.109126 GCAAGGGTGGTCAGCGATC 61.109 63.158 0.00 0.00 0.00 3.69
113 114 1.599047 CAAGGGTGGTCAGCGATCT 59.401 57.895 0.00 0.00 0.00 2.75
114 115 0.824109 CAAGGGTGGTCAGCGATCTA 59.176 55.000 0.00 0.00 0.00 1.98
115 116 1.207089 CAAGGGTGGTCAGCGATCTAA 59.793 52.381 0.00 0.00 0.00 2.10
116 117 1.794714 AGGGTGGTCAGCGATCTAAT 58.205 50.000 0.00 0.00 0.00 1.73
117 118 1.689273 AGGGTGGTCAGCGATCTAATC 59.311 52.381 0.00 0.00 0.00 1.75
118 119 1.689273 GGGTGGTCAGCGATCTAATCT 59.311 52.381 0.00 0.00 0.00 2.40
119 120 2.891580 GGGTGGTCAGCGATCTAATCTA 59.108 50.000 0.00 0.00 0.00 1.98
120 121 3.321111 GGGTGGTCAGCGATCTAATCTAA 59.679 47.826 0.00 0.00 0.00 2.10
121 122 4.202223 GGGTGGTCAGCGATCTAATCTAAA 60.202 45.833 0.00 0.00 0.00 1.85
122 123 5.357257 GGTGGTCAGCGATCTAATCTAAAA 58.643 41.667 0.00 0.00 0.00 1.52
123 124 5.815740 GGTGGTCAGCGATCTAATCTAAAAA 59.184 40.000 0.00 0.00 0.00 1.94
124 125 6.238130 GGTGGTCAGCGATCTAATCTAAAAAC 60.238 42.308 0.00 0.00 0.00 2.43
125 126 5.815740 TGGTCAGCGATCTAATCTAAAAACC 59.184 40.000 0.00 0.00 0.00 3.27
126 127 5.815740 GGTCAGCGATCTAATCTAAAAACCA 59.184 40.000 0.00 0.00 0.00 3.67
127 128 6.238130 GGTCAGCGATCTAATCTAAAAACCAC 60.238 42.308 0.00 0.00 0.00 4.16
128 129 6.312918 GTCAGCGATCTAATCTAAAAACCACA 59.687 38.462 0.00 0.00 0.00 4.17
213 215 5.294473 ACTAACCTATTAACCCAGTCCCAT 58.706 41.667 0.00 0.00 0.00 4.00
221 225 1.747444 ACCCAGTCCCATTGTCTTCT 58.253 50.000 0.00 0.00 0.00 2.85
249 255 4.676849 TTGCTTGTTTTTGGCTTTTGAC 57.323 36.364 0.00 0.00 0.00 3.18
292 298 9.997482 GAAGTCTAAACACAATGAAACTTTACA 57.003 29.630 0.00 0.00 0.00 2.41
298 304 8.633075 AAACACAATGAAACTTTACAGTGATG 57.367 30.769 0.00 0.00 31.60 3.07
469 475 2.309755 TCCCAAATCAACAGAGAGCCAT 59.690 45.455 0.00 0.00 0.00 4.40
476 482 2.237143 TCAACAGAGAGCCATCCGAAAT 59.763 45.455 0.00 0.00 0.00 2.17
485 492 4.584743 AGAGCCATCCGAAATATTTTTCCC 59.415 41.667 1.43 0.00 38.40 3.97
501 508 1.826054 CCCGCCACCACAAGTTTCA 60.826 57.895 0.00 0.00 0.00 2.69
513 521 2.943033 ACAAGTTTCAGTTCTTCCGTGG 59.057 45.455 0.00 0.00 0.00 4.94
523 531 0.252057 TCTTCCGTGGTCCCATCTGA 60.252 55.000 0.00 0.00 0.00 3.27
594 603 0.613260 ACATCGTCCTTGCTGCCTTA 59.387 50.000 0.00 0.00 0.00 2.69
674 684 7.959689 TGACTTCTTTTCTCTCTTTGATCTG 57.040 36.000 0.00 0.00 0.00 2.90
675 685 7.504403 TGACTTCTTTTCTCTCTTTGATCTGT 58.496 34.615 0.00 0.00 0.00 3.41
676 686 7.655328 TGACTTCTTTTCTCTCTTTGATCTGTC 59.345 37.037 0.00 0.00 0.00 3.51
678 688 7.989741 ACTTCTTTTCTCTCTTTGATCTGTCAA 59.010 33.333 0.00 0.00 42.41 3.18
717 956 7.984050 TGCTGAAATTAAGTTTGAAATGAACCA 59.016 29.630 0.00 0.00 0.00 3.67
762 1001 0.821711 TTCGCCTCCACAAAACCCAG 60.822 55.000 0.00 0.00 0.00 4.45
837 1076 3.539253 CATGCAATGTTAGGAGCGC 57.461 52.632 0.00 0.00 40.20 5.92
854 1093 2.908073 GCCGTTGCTGTTGGAGTGG 61.908 63.158 0.00 0.00 33.53 4.00
1032 1281 0.753479 CGCAGCTCCTCCTCCTCTTA 60.753 60.000 0.00 0.00 0.00 2.10
1141 1393 1.743252 GAAGTGGGCTTCGCAGAGG 60.743 63.158 0.00 0.00 41.27 3.69
1373 1626 1.251251 GCTTCATGGCAGGAACAAGT 58.749 50.000 10.99 0.00 0.00 3.16
1449 1703 7.095732 GGTTACTGTGTAAGCTCAAGTAGTTTC 60.096 40.741 11.05 0.00 30.42 2.78
1602 1856 5.474876 AGGAATAAACAGCTGAAACAAGAGG 59.525 40.000 23.35 0.00 0.00 3.69
1627 1882 8.352942 GGAAAATGTTAGTGGGATATGATTGAC 58.647 37.037 0.00 0.00 0.00 3.18
1741 2078 3.228749 CATGTGCGTGAGTTCATGTTTC 58.771 45.455 3.51 0.00 38.47 2.78
1743 2080 2.543848 TGTGCGTGAGTTCATGTTTCTC 59.456 45.455 3.51 0.44 35.38 2.87
1748 2085 4.672413 GCGTGAGTTCATGTTTCTCTTTTG 59.328 41.667 12.67 4.96 35.38 2.44
1831 2169 8.511321 TGCTAGATAATTTTAACACCACACAAG 58.489 33.333 0.00 0.00 0.00 3.16
1856 2194 9.525409 AGCAAACTCGATAAAATTATACTACGT 57.475 29.630 0.00 0.00 0.00 3.57
1857 2195 9.564041 GCAAACTCGATAAAATTATACTACGTG 57.436 33.333 0.00 0.00 0.00 4.49
1858 2196 9.564041 CAAACTCGATAAAATTATACTACGTGC 57.436 33.333 0.00 0.00 0.00 5.34
1877 2215 2.275318 GCTAGTGAGCTGACCACAATC 58.725 52.381 0.00 0.00 45.98 2.67
1878 2216 2.898705 CTAGTGAGCTGACCACAATCC 58.101 52.381 0.00 0.00 37.01 3.01
1879 2217 0.326264 AGTGAGCTGACCACAATCCC 59.674 55.000 0.00 0.00 37.01 3.85
1880 2218 1.021390 GTGAGCTGACCACAATCCCG 61.021 60.000 0.00 0.00 34.81 5.14
1881 2219 1.191489 TGAGCTGACCACAATCCCGA 61.191 55.000 0.00 0.00 0.00 5.14
1882 2220 0.179000 GAGCTGACCACAATCCCGAT 59.821 55.000 0.00 0.00 0.00 4.18
1883 2221 0.179000 AGCTGACCACAATCCCGATC 59.821 55.000 0.00 0.00 0.00 3.69
1884 2222 0.107703 GCTGACCACAATCCCGATCA 60.108 55.000 0.00 0.00 0.00 2.92
1885 2223 1.475751 GCTGACCACAATCCCGATCAT 60.476 52.381 0.00 0.00 0.00 2.45
1886 2224 2.487934 CTGACCACAATCCCGATCATC 58.512 52.381 0.00 0.00 0.00 2.92
1887 2225 2.103771 CTGACCACAATCCCGATCATCT 59.896 50.000 0.00 0.00 0.00 2.90
1888 2226 2.103094 TGACCACAATCCCGATCATCTC 59.897 50.000 0.00 0.00 0.00 2.75
1889 2227 1.417890 ACCACAATCCCGATCATCTCC 59.582 52.381 0.00 0.00 0.00 3.71
1890 2228 1.271054 CCACAATCCCGATCATCTCCC 60.271 57.143 0.00 0.00 0.00 4.30
1891 2229 1.696336 CACAATCCCGATCATCTCCCT 59.304 52.381 0.00 0.00 0.00 4.20
1892 2230 1.696336 ACAATCCCGATCATCTCCCTG 59.304 52.381 0.00 0.00 0.00 4.45
1893 2231 1.696336 CAATCCCGATCATCTCCCTGT 59.304 52.381 0.00 0.00 0.00 4.00
1894 2232 2.899900 CAATCCCGATCATCTCCCTGTA 59.100 50.000 0.00 0.00 0.00 2.74
1895 2233 1.996798 TCCCGATCATCTCCCTGTAC 58.003 55.000 0.00 0.00 0.00 2.90
1896 2234 0.598562 CCCGATCATCTCCCTGTACG 59.401 60.000 0.00 0.00 0.00 3.67
1897 2235 1.319541 CCGATCATCTCCCTGTACGT 58.680 55.000 0.00 0.00 0.00 3.57
1898 2236 1.001268 CCGATCATCTCCCTGTACGTG 60.001 57.143 0.00 0.00 0.00 4.49
1899 2237 1.001268 CGATCATCTCCCTGTACGTGG 60.001 57.143 0.00 0.00 0.00 4.94
1900 2238 2.307768 GATCATCTCCCTGTACGTGGA 58.692 52.381 0.00 4.85 0.00 4.02
1901 2239 2.454336 TCATCTCCCTGTACGTGGAT 57.546 50.000 0.00 0.00 0.00 3.41
1902 2240 2.031870 TCATCTCCCTGTACGTGGATG 58.968 52.381 0.00 6.93 33.92 3.51
1903 2241 2.031870 CATCTCCCTGTACGTGGATGA 58.968 52.381 0.00 5.92 34.35 2.92
1904 2242 1.471119 TCTCCCTGTACGTGGATGAC 58.529 55.000 0.00 0.00 0.00 3.06
1920 2258 2.299993 TGACGTCATCATCTTCTGCC 57.700 50.000 15.76 0.00 29.99 4.85
1921 2259 1.550072 TGACGTCATCATCTTCTGCCA 59.450 47.619 15.76 0.00 29.99 4.92
1922 2260 1.929836 GACGTCATCATCTTCTGCCAC 59.070 52.381 11.55 0.00 0.00 5.01
1923 2261 1.293924 CGTCATCATCTTCTGCCACC 58.706 55.000 0.00 0.00 0.00 4.61
1924 2262 1.673168 GTCATCATCTTCTGCCACCC 58.327 55.000 0.00 0.00 0.00 4.61
1925 2263 0.548031 TCATCATCTTCTGCCACCCC 59.452 55.000 0.00 0.00 0.00 4.95
1926 2264 0.549950 CATCATCTTCTGCCACCCCT 59.450 55.000 0.00 0.00 0.00 4.79
1927 2265 0.842635 ATCATCTTCTGCCACCCCTC 59.157 55.000 0.00 0.00 0.00 4.30
1928 2266 1.153289 CATCTTCTGCCACCCCTCG 60.153 63.158 0.00 0.00 0.00 4.63
1929 2267 2.370445 ATCTTCTGCCACCCCTCGG 61.370 63.158 0.00 0.00 0.00 4.63
1951 2289 2.944557 CGACACGCTCGATGTCCG 60.945 66.667 11.10 3.32 46.14 4.79
1952 2290 3.248171 GACACGCTCGATGTCCGC 61.248 66.667 6.40 0.00 40.56 5.54
1953 2291 3.964221 GACACGCTCGATGTCCGCA 62.964 63.158 6.40 0.00 40.56 5.69
1954 2292 2.809174 CACGCTCGATGTCCGCAA 60.809 61.111 0.00 0.00 38.37 4.85
1955 2293 2.507102 ACGCTCGATGTCCGCAAG 60.507 61.111 0.00 0.00 38.37 4.01
1956 2294 2.202610 CGCTCGATGTCCGCAAGA 60.203 61.111 0.00 0.00 43.02 3.02
1957 2295 1.589993 CGCTCGATGTCCGCAAGAT 60.590 57.895 0.00 0.00 43.02 2.40
1958 2296 1.543941 CGCTCGATGTCCGCAAGATC 61.544 60.000 0.00 0.00 43.02 2.75
1959 2297 1.218230 GCTCGATGTCCGCAAGATCC 61.218 60.000 0.00 0.00 43.02 3.36
1960 2298 0.387202 CTCGATGTCCGCAAGATCCT 59.613 55.000 0.00 0.00 43.02 3.24
1961 2299 0.103026 TCGATGTCCGCAAGATCCTG 59.897 55.000 0.00 0.00 43.02 3.86
1962 2300 1.493950 CGATGTCCGCAAGATCCTGC 61.494 60.000 6.21 6.21 43.02 4.85
1963 2301 0.462581 GATGTCCGCAAGATCCTGCA 60.463 55.000 16.30 0.00 42.77 4.41
1964 2302 0.463295 ATGTCCGCAAGATCCTGCAG 60.463 55.000 16.30 6.78 42.77 4.41
1965 2303 2.124983 TCCGCAAGATCCTGCAGC 60.125 61.111 16.30 0.00 42.77 5.25
1966 2304 2.124819 CCGCAAGATCCTGCAGCT 60.125 61.111 16.30 0.00 42.77 4.24
1967 2305 2.178890 CCGCAAGATCCTGCAGCTC 61.179 63.158 16.30 7.32 42.77 4.09
1968 2306 1.153409 CGCAAGATCCTGCAGCTCT 60.153 57.895 16.30 9.70 42.77 4.09
1969 2307 0.743701 CGCAAGATCCTGCAGCTCTT 60.744 55.000 18.80 18.80 42.77 2.85
1970 2308 1.461559 GCAAGATCCTGCAGCTCTTT 58.538 50.000 20.87 6.51 42.17 2.52
1971 2309 1.132643 GCAAGATCCTGCAGCTCTTTG 59.867 52.381 20.87 16.48 42.17 2.77
1972 2310 1.743958 CAAGATCCTGCAGCTCTTTGG 59.256 52.381 20.87 11.38 0.00 3.28
1973 2311 0.394080 AGATCCTGCAGCTCTTTGGC 60.394 55.000 8.66 0.00 0.00 4.52
1974 2312 1.379576 ATCCTGCAGCTCTTTGGCC 60.380 57.895 8.66 0.00 0.00 5.36
1975 2313 3.437795 CCTGCAGCTCTTTGGCCG 61.438 66.667 8.66 0.00 0.00 6.13
1976 2314 2.359107 CTGCAGCTCTTTGGCCGA 60.359 61.111 0.00 0.00 0.00 5.54
1977 2315 2.359107 TGCAGCTCTTTGGCCGAG 60.359 61.111 0.00 0.00 0.00 4.63
1982 2320 4.623814 CTCTTTGGCCGAGCATCA 57.376 55.556 0.00 0.00 33.17 3.07
1983 2321 2.391469 CTCTTTGGCCGAGCATCAG 58.609 57.895 0.00 0.00 33.17 2.90
1984 2322 1.078214 TCTTTGGCCGAGCATCAGG 60.078 57.895 0.00 0.00 33.17 3.86
1989 2327 2.746359 GCCGAGCATCAGGCCTAT 59.254 61.111 3.98 0.00 44.95 2.57
1990 2328 1.670406 GCCGAGCATCAGGCCTATG 60.670 63.158 3.98 11.24 44.95 2.23
1991 2329 1.004080 CCGAGCATCAGGCCTATGG 60.004 63.158 3.98 0.00 46.50 2.74
1992 2330 1.004080 CGAGCATCAGGCCTATGGG 60.004 63.158 3.98 0.00 46.50 4.00
1993 2331 1.762522 CGAGCATCAGGCCTATGGGT 61.763 60.000 3.98 2.42 46.50 4.51
1994 2332 0.036022 GAGCATCAGGCCTATGGGTC 59.964 60.000 3.98 9.12 46.50 4.46
1995 2333 0.695462 AGCATCAGGCCTATGGGTCA 60.695 55.000 3.98 0.00 46.50 4.02
1996 2334 0.183492 GCATCAGGCCTATGGGTCAA 59.817 55.000 3.98 0.00 40.27 3.18
1997 2335 1.202976 GCATCAGGCCTATGGGTCAAT 60.203 52.381 3.98 0.00 40.27 2.57
1998 2336 2.754186 GCATCAGGCCTATGGGTCAATT 60.754 50.000 3.98 0.00 40.27 2.32
1999 2337 3.569491 CATCAGGCCTATGGGTCAATTT 58.431 45.455 3.98 0.00 40.27 1.82
2000 2338 3.297134 TCAGGCCTATGGGTCAATTTC 57.703 47.619 3.98 0.00 40.27 2.17
2001 2339 2.091885 TCAGGCCTATGGGTCAATTTCC 60.092 50.000 3.98 0.00 40.27 3.13
2002 2340 1.929494 AGGCCTATGGGTCAATTTCCA 59.071 47.619 1.29 0.00 40.27 3.53
2003 2341 2.091665 AGGCCTATGGGTCAATTTCCAG 60.092 50.000 1.29 0.00 40.27 3.86
2004 2342 2.091885 GGCCTATGGGTCAATTTCCAGA 60.092 50.000 0.00 0.00 37.14 3.86
2005 2343 3.627237 GGCCTATGGGTCAATTTCCAGAA 60.627 47.826 0.00 0.00 37.14 3.02
2006 2344 3.633986 GCCTATGGGTCAATTTCCAGAAG 59.366 47.826 0.00 0.00 36.38 2.85
2007 2345 4.628715 GCCTATGGGTCAATTTCCAGAAGA 60.629 45.833 0.00 0.00 36.38 2.87
2008 2346 5.128919 CCTATGGGTCAATTTCCAGAAGAG 58.871 45.833 0.00 0.00 36.38 2.85
2009 2347 2.795329 TGGGTCAATTTCCAGAAGAGC 58.205 47.619 0.00 0.00 0.00 4.09
2010 2348 2.108075 TGGGTCAATTTCCAGAAGAGCA 59.892 45.455 0.00 0.00 0.00 4.26
2011 2349 2.489722 GGGTCAATTTCCAGAAGAGCAC 59.510 50.000 0.00 0.00 0.00 4.40
2012 2350 2.489722 GGTCAATTTCCAGAAGAGCACC 59.510 50.000 0.00 0.00 0.00 5.01
2013 2351 2.160417 GTCAATTTCCAGAAGAGCACCG 59.840 50.000 0.00 0.00 0.00 4.94
2014 2352 1.135575 CAATTTCCAGAAGAGCACCGC 60.136 52.381 0.00 0.00 0.00 5.68
2015 2353 0.678048 ATTTCCAGAAGAGCACCGCC 60.678 55.000 0.00 0.00 0.00 6.13
2016 2354 2.050836 TTTCCAGAAGAGCACCGCCA 62.051 55.000 0.00 0.00 0.00 5.69
2017 2355 2.731691 TTCCAGAAGAGCACCGCCAC 62.732 60.000 0.00 0.00 0.00 5.01
2018 2356 2.345244 CAGAAGAGCACCGCCACT 59.655 61.111 0.00 0.00 0.00 4.00
2019 2357 2.031516 CAGAAGAGCACCGCCACTG 61.032 63.158 0.00 0.00 0.00 3.66
2020 2358 3.426568 GAAGAGCACCGCCACTGC 61.427 66.667 0.00 0.00 34.63 4.40
2030 2368 3.643978 GCCACTGCGATCCGATGC 61.644 66.667 0.00 0.00 0.00 3.91
2031 2369 3.333189 CCACTGCGATCCGATGCG 61.333 66.667 0.00 0.00 0.00 4.73
2032 2370 2.278792 CACTGCGATCCGATGCGA 60.279 61.111 0.00 0.00 0.00 5.10
2033 2371 1.662760 CACTGCGATCCGATGCGAT 60.663 57.895 0.00 0.00 0.00 4.58
2034 2372 1.662760 ACTGCGATCCGATGCGATG 60.663 57.895 0.00 0.00 0.00 3.84
2035 2373 1.372128 CTGCGATCCGATGCGATGA 60.372 57.895 0.00 0.00 0.00 2.92
2036 2374 1.612469 CTGCGATCCGATGCGATGAC 61.612 60.000 0.00 0.00 0.00 3.06
2037 2375 2.710971 GCGATCCGATGCGATGACG 61.711 63.158 0.00 0.00 42.93 4.35
2038 2376 1.082104 CGATCCGATGCGATGACGA 60.082 57.895 0.00 0.00 42.66 4.20
2039 2377 1.062336 CGATCCGATGCGATGACGAG 61.062 60.000 0.00 0.00 42.66 4.18
2040 2378 0.730834 GATCCGATGCGATGACGAGG 60.731 60.000 0.00 0.00 42.66 4.63
2041 2379 1.172812 ATCCGATGCGATGACGAGGA 61.173 55.000 0.00 0.00 42.66 3.71
2042 2380 1.371022 CCGATGCGATGACGAGGAG 60.371 63.158 0.00 0.00 42.66 3.69
2043 2381 1.371022 CGATGCGATGACGAGGAGG 60.371 63.158 0.00 0.00 42.66 4.30
2044 2382 1.736586 GATGCGATGACGAGGAGGT 59.263 57.895 0.00 0.00 42.66 3.85
2045 2383 0.318275 GATGCGATGACGAGGAGGTC 60.318 60.000 0.00 0.00 42.66 3.85
2091 2429 2.817834 CGCTCGCGGAATTCCCAA 60.818 61.111 19.01 3.57 35.56 4.12
2092 2430 2.180204 CGCTCGCGGAATTCCCAAT 61.180 57.895 19.01 0.00 35.56 3.16
2093 2431 1.649267 GCTCGCGGAATTCCCAATC 59.351 57.895 19.01 4.95 34.14 2.67
2094 2432 1.095228 GCTCGCGGAATTCCCAATCA 61.095 55.000 19.01 0.00 34.14 2.57
2095 2433 0.657840 CTCGCGGAATTCCCAATCAC 59.342 55.000 19.01 1.10 34.14 3.06
2096 2434 0.746563 TCGCGGAATTCCCAATCACC 60.747 55.000 19.01 0.00 34.14 4.02
2097 2435 0.748005 CGCGGAATTCCCAATCACCT 60.748 55.000 19.01 0.00 34.14 4.00
2098 2436 1.474320 CGCGGAATTCCCAATCACCTA 60.474 52.381 19.01 0.00 34.14 3.08
2099 2437 1.947456 GCGGAATTCCCAATCACCTAC 59.053 52.381 19.01 0.00 34.14 3.18
2100 2438 2.572290 CGGAATTCCCAATCACCTACC 58.428 52.381 19.01 0.00 34.14 3.18
2101 2439 2.172717 CGGAATTCCCAATCACCTACCT 59.827 50.000 19.01 0.00 34.14 3.08
2102 2440 3.555966 GGAATTCCCAATCACCTACCTG 58.444 50.000 14.03 0.00 34.14 4.00
2103 2441 3.555966 GAATTCCCAATCACCTACCTGG 58.444 50.000 0.00 0.00 42.93 4.45
2108 2446 3.214696 CCAATCACCTACCTGGGAATC 57.785 52.381 0.00 0.00 41.11 2.52
2109 2447 2.158608 CCAATCACCTACCTGGGAATCC 60.159 54.545 0.00 0.00 41.11 3.01
2110 2448 1.821088 ATCACCTACCTGGGAATCCC 58.179 55.000 12.39 12.39 45.71 3.85
2120 2458 3.662071 GGAATCCCCCTCACCCTC 58.338 66.667 0.00 0.00 0.00 4.30
2121 2459 2.079288 GGAATCCCCCTCACCCTCC 61.079 68.421 0.00 0.00 0.00 4.30
2122 2460 2.366972 AATCCCCCTCACCCTCCG 60.367 66.667 0.00 0.00 0.00 4.63
2123 2461 2.891307 GAATCCCCCTCACCCTCCGA 62.891 65.000 0.00 0.00 0.00 4.55
2124 2462 3.698263 ATCCCCCTCACCCTCCGAC 62.698 68.421 0.00 0.00 0.00 4.79
2153 2491 4.432741 GCCCAGCTCCAACCCCTC 62.433 72.222 0.00 0.00 0.00 4.30
2154 2492 4.101448 CCCAGCTCCAACCCCTCG 62.101 72.222 0.00 0.00 0.00 4.63
2155 2493 3.322466 CCAGCTCCAACCCCTCGT 61.322 66.667 0.00 0.00 0.00 4.18
2156 2494 2.750350 CAGCTCCAACCCCTCGTT 59.250 61.111 0.00 0.00 33.90 3.85
2165 2503 1.395635 AACCCCTCGTTGACAAAACC 58.604 50.000 0.00 0.00 31.79 3.27
2166 2504 0.816421 ACCCCTCGTTGACAAAACCG 60.816 55.000 0.00 0.00 0.00 4.44
2167 2505 1.281656 CCCTCGTTGACAAAACCGC 59.718 57.895 0.00 0.00 0.00 5.68
2168 2506 1.281656 CCTCGTTGACAAAACCGCC 59.718 57.895 0.00 0.00 0.00 6.13
2169 2507 1.083015 CTCGTTGACAAAACCGCCG 60.083 57.895 0.00 0.00 0.00 6.46
2170 2508 2.051703 CGTTGACAAAACCGCCGG 60.052 61.111 0.00 0.00 0.00 6.13
2171 2509 2.333581 GTTGACAAAACCGCCGGG 59.666 61.111 8.57 0.00 40.11 5.73
2172 2510 2.188161 GTTGACAAAACCGCCGGGA 61.188 57.895 8.57 0.00 36.97 5.14
2173 2511 1.453379 TTGACAAAACCGCCGGGAA 60.453 52.632 8.57 0.00 36.97 3.97
2174 2512 1.448922 TTGACAAAACCGCCGGGAAG 61.449 55.000 8.57 0.00 36.97 3.46
2175 2513 3.263503 GACAAAACCGCCGGGAAGC 62.264 63.158 8.57 0.00 36.97 3.86
2176 2514 2.983592 CAAAACCGCCGGGAAGCT 60.984 61.111 8.57 0.00 36.97 3.74
2177 2515 2.983592 AAAACCGCCGGGAAGCTG 60.984 61.111 8.57 0.00 36.97 4.24
2186 2524 4.748144 GGGAAGCTGGCCACCTGG 62.748 72.222 0.00 0.00 38.53 4.45
2187 2525 3.650950 GGAAGCTGGCCACCTGGA 61.651 66.667 0.00 0.00 37.39 3.86
2188 2526 2.436109 GAAGCTGGCCACCTGGAA 59.564 61.111 0.00 0.00 37.39 3.53
2189 2527 1.228552 GAAGCTGGCCACCTGGAAA 60.229 57.895 0.00 0.00 37.39 3.13
2190 2528 1.228675 AAGCTGGCCACCTGGAAAG 60.229 57.895 0.00 0.00 37.39 2.62
2191 2529 3.376918 GCTGGCCACCTGGAAAGC 61.377 66.667 0.00 0.00 37.78 3.51
2192 2530 2.677875 CTGGCCACCTGGAAAGCC 60.678 66.667 0.00 16.07 45.96 4.35
2193 2531 4.299796 TGGCCACCTGGAAAGCCC 62.300 66.667 18.82 5.62 45.14 5.19
2194 2532 4.299796 GGCCACCTGGAAAGCCCA 62.300 66.667 13.15 0.00 44.25 5.36
2195 2533 2.991540 GCCACCTGGAAAGCCCAC 60.992 66.667 0.00 0.00 40.82 4.61
2196 2534 2.283173 CCACCTGGAAAGCCCACC 60.283 66.667 0.00 0.00 40.82 4.61
2197 2535 2.845345 CCACCTGGAAAGCCCACCT 61.845 63.158 0.00 0.00 40.82 4.00
2198 2536 1.303643 CACCTGGAAAGCCCACCTC 60.304 63.158 0.00 0.00 40.82 3.85
2199 2537 1.774217 ACCTGGAAAGCCCACCTCA 60.774 57.895 0.00 0.00 40.82 3.86
2200 2538 1.142688 ACCTGGAAAGCCCACCTCAT 61.143 55.000 0.00 0.00 40.82 2.90
2201 2539 0.682209 CCTGGAAAGCCCACCTCATG 60.682 60.000 0.00 0.00 40.82 3.07
2202 2540 0.329261 CTGGAAAGCCCACCTCATGA 59.671 55.000 0.00 0.00 40.82 3.07
2203 2541 0.776810 TGGAAAGCCCACCTCATGAA 59.223 50.000 0.00 0.00 40.82 2.57
2204 2542 1.177401 GGAAAGCCCACCTCATGAAC 58.823 55.000 0.00 0.00 34.14 3.18
2205 2543 1.547675 GGAAAGCCCACCTCATGAACA 60.548 52.381 0.00 0.00 34.14 3.18
2206 2544 2.238521 GAAAGCCCACCTCATGAACAA 58.761 47.619 0.00 0.00 0.00 2.83
2207 2545 2.380064 AAGCCCACCTCATGAACAAA 57.620 45.000 0.00 0.00 0.00 2.83
2208 2546 1.915141 AGCCCACCTCATGAACAAAG 58.085 50.000 0.00 0.00 0.00 2.77
2209 2547 0.244721 GCCCACCTCATGAACAAAGC 59.755 55.000 0.00 0.00 0.00 3.51
2210 2548 0.890683 CCCACCTCATGAACAAAGCC 59.109 55.000 0.00 0.00 0.00 4.35
2211 2549 0.523072 CCACCTCATGAACAAAGCCG 59.477 55.000 0.00 0.00 0.00 5.52
2212 2550 0.523072 CACCTCATGAACAAAGCCGG 59.477 55.000 0.00 0.00 0.00 6.13
2213 2551 0.400213 ACCTCATGAACAAAGCCGGA 59.600 50.000 5.05 0.00 0.00 5.14
2214 2552 0.804989 CCTCATGAACAAAGCCGGAC 59.195 55.000 5.05 0.00 0.00 4.79
2215 2553 0.443869 CTCATGAACAAAGCCGGACG 59.556 55.000 5.05 0.00 0.00 4.79
2216 2554 0.250124 TCATGAACAAAGCCGGACGT 60.250 50.000 5.05 0.00 0.00 4.34
2217 2555 0.165944 CATGAACAAAGCCGGACGTC 59.834 55.000 5.05 7.13 0.00 4.34
2218 2556 0.034896 ATGAACAAAGCCGGACGTCT 59.965 50.000 16.46 0.00 0.00 4.18
2219 2557 0.599204 TGAACAAAGCCGGACGTCTC 60.599 55.000 16.46 4.72 0.00 3.36
2220 2558 1.615107 GAACAAAGCCGGACGTCTCG 61.615 60.000 16.46 16.43 0.00 4.04
2221 2559 3.479269 CAAAGCCGGACGTCTCGC 61.479 66.667 16.46 16.46 0.00 5.03
2222 2560 4.736896 AAAGCCGGACGTCTCGCC 62.737 66.667 16.46 7.39 0.00 5.54
2225 2563 4.736896 GCCGGACGTCTCGCCTTT 62.737 66.667 16.46 0.00 0.00 3.11
2226 2564 2.809601 CCGGACGTCTCGCCTTTG 60.810 66.667 16.46 0.96 0.00 2.77
2227 2565 2.049433 CGGACGTCTCGCCTTTGT 60.049 61.111 16.46 0.00 0.00 2.83
2228 2566 2.087009 CGGACGTCTCGCCTTTGTC 61.087 63.158 16.46 0.00 0.00 3.18
2229 2567 1.006571 GGACGTCTCGCCTTTGTCA 60.007 57.895 16.46 0.00 0.00 3.58
2230 2568 0.599204 GGACGTCTCGCCTTTGTCAA 60.599 55.000 16.46 0.00 0.00 3.18
2231 2569 1.214367 GACGTCTCGCCTTTGTCAAA 58.786 50.000 8.70 0.00 0.00 2.69
2232 2570 1.192534 GACGTCTCGCCTTTGTCAAAG 59.807 52.381 17.02 17.02 38.24 2.77
2233 2571 0.110644 CGTCTCGCCTTTGTCAAAGC 60.111 55.000 18.30 12.93 37.18 3.51
2234 2572 1.230324 GTCTCGCCTTTGTCAAAGCT 58.770 50.000 18.30 0.00 37.18 3.74
2235 2573 1.069636 GTCTCGCCTTTGTCAAAGCTG 60.070 52.381 18.30 12.69 37.18 4.24
2236 2574 0.947244 CTCGCCTTTGTCAAAGCTGT 59.053 50.000 18.30 0.00 37.18 4.40
2237 2575 0.662619 TCGCCTTTGTCAAAGCTGTG 59.337 50.000 18.30 12.67 37.18 3.66
2238 2576 0.936297 CGCCTTTGTCAAAGCTGTGC 60.936 55.000 18.30 14.75 37.18 4.57
2239 2577 0.936297 GCCTTTGTCAAAGCTGTGCG 60.936 55.000 18.30 6.28 37.18 5.34
2240 2578 0.662619 CCTTTGTCAAAGCTGTGCGA 59.337 50.000 18.30 0.00 37.18 5.10
2241 2579 1.065401 CCTTTGTCAAAGCTGTGCGAA 59.935 47.619 18.30 0.20 37.18 4.70
2242 2580 2.378806 CTTTGTCAAAGCTGTGCGAAG 58.621 47.619 12.26 6.48 0.00 3.79
2255 2593 2.338620 CGAAGCGCGATCCCCATA 59.661 61.111 12.10 0.00 44.57 2.74
2256 2594 2.022129 CGAAGCGCGATCCCCATAC 61.022 63.158 12.10 0.00 44.57 2.39
2257 2595 1.069090 GAAGCGCGATCCCCATACA 59.931 57.895 12.10 0.00 0.00 2.29
2258 2596 1.222115 GAAGCGCGATCCCCATACAC 61.222 60.000 12.10 0.00 0.00 2.90
2259 2597 2.660258 AAGCGCGATCCCCATACACC 62.660 60.000 12.10 0.00 0.00 4.16
2260 2598 2.818841 CGCGATCCCCATACACCA 59.181 61.111 0.00 0.00 0.00 4.17
2261 2599 1.300931 CGCGATCCCCATACACCAG 60.301 63.158 0.00 0.00 0.00 4.00
2262 2600 1.598130 GCGATCCCCATACACCAGC 60.598 63.158 0.00 0.00 0.00 4.85
2263 2601 2.044806 GCGATCCCCATACACCAGCT 62.045 60.000 0.00 0.00 0.00 4.24
2264 2602 0.034059 CGATCCCCATACACCAGCTC 59.966 60.000 0.00 0.00 0.00 4.09
2265 2603 0.398318 GATCCCCATACACCAGCTCC 59.602 60.000 0.00 0.00 0.00 4.70
2266 2604 0.029681 ATCCCCATACACCAGCTCCT 60.030 55.000 0.00 0.00 0.00 3.69
2267 2605 0.982852 TCCCCATACACCAGCTCCTG 60.983 60.000 0.00 0.00 0.00 3.86
2288 2626 3.127533 CTCGCGCCCCCAAAGAAG 61.128 66.667 0.00 0.00 0.00 2.85
2289 2627 3.605749 CTCGCGCCCCCAAAGAAGA 62.606 63.158 0.00 0.00 0.00 2.87
2290 2628 2.438434 CGCGCCCCCAAAGAAGAT 60.438 61.111 0.00 0.00 0.00 2.40
2291 2629 2.472909 CGCGCCCCCAAAGAAGATC 61.473 63.158 0.00 0.00 0.00 2.75
2292 2630 1.378514 GCGCCCCCAAAGAAGATCA 60.379 57.895 0.00 0.00 0.00 2.92
2293 2631 0.753111 GCGCCCCCAAAGAAGATCAT 60.753 55.000 0.00 0.00 0.00 2.45
2294 2632 1.312815 CGCCCCCAAAGAAGATCATC 58.687 55.000 0.00 0.00 0.00 2.92
2295 2633 1.408683 CGCCCCCAAAGAAGATCATCA 60.409 52.381 0.10 0.00 0.00 3.07
2296 2634 2.738743 GCCCCCAAAGAAGATCATCAA 58.261 47.619 0.10 0.00 0.00 2.57
2297 2635 2.692041 GCCCCCAAAGAAGATCATCAAG 59.308 50.000 0.10 0.00 0.00 3.02
2298 2636 2.692041 CCCCCAAAGAAGATCATCAAGC 59.308 50.000 0.10 0.00 0.00 4.01
2299 2637 3.626729 CCCCCAAAGAAGATCATCAAGCT 60.627 47.826 0.10 0.00 0.00 3.74
2300 2638 3.631227 CCCCAAAGAAGATCATCAAGCTC 59.369 47.826 0.10 0.00 0.00 4.09
2301 2639 3.631227 CCCAAAGAAGATCATCAAGCTCC 59.369 47.826 0.10 0.00 0.00 4.70
2302 2640 4.525024 CCAAAGAAGATCATCAAGCTCCT 58.475 43.478 0.10 0.00 0.00 3.69
2303 2641 4.335874 CCAAAGAAGATCATCAAGCTCCTG 59.664 45.833 0.10 0.00 0.00 3.86
2304 2642 3.842007 AGAAGATCATCAAGCTCCTGG 57.158 47.619 0.10 0.00 0.00 4.45
2305 2643 3.382278 AGAAGATCATCAAGCTCCTGGA 58.618 45.455 0.10 0.00 0.00 3.86
2306 2644 3.388676 AGAAGATCATCAAGCTCCTGGAG 59.611 47.826 19.55 19.55 0.00 3.86
2307 2645 3.043465 AGATCATCAAGCTCCTGGAGA 57.957 47.619 27.53 6.87 0.00 3.71
2308 2646 3.382278 AGATCATCAAGCTCCTGGAGAA 58.618 45.455 27.53 9.20 0.00 2.87
2309 2647 3.779183 AGATCATCAAGCTCCTGGAGAAA 59.221 43.478 27.53 8.85 0.00 2.52
2310 2648 4.226846 AGATCATCAAGCTCCTGGAGAAAA 59.773 41.667 27.53 9.20 0.00 2.29
2311 2649 4.581309 TCATCAAGCTCCTGGAGAAAAT 57.419 40.909 27.53 11.03 0.00 1.82
2312 2650 4.927049 TCATCAAGCTCCTGGAGAAAATT 58.073 39.130 27.53 12.15 0.00 1.82
2313 2651 4.946157 TCATCAAGCTCCTGGAGAAAATTC 59.054 41.667 27.53 8.21 0.00 2.17
2314 2652 4.371624 TCAAGCTCCTGGAGAAAATTCA 57.628 40.909 27.53 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.419484 TGTATCAGTGGACAACCTATATGG 57.581 41.667 0.00 0.00 42.93 2.74
68 69 7.884877 CCAGGTGGCTTCAAGATTGATAATATA 59.115 37.037 0.00 0.00 37.00 0.86
69 70 6.718454 CCAGGTGGCTTCAAGATTGATAATAT 59.282 38.462 0.00 0.00 37.00 1.28
70 71 6.064060 CCAGGTGGCTTCAAGATTGATAATA 58.936 40.000 0.00 0.00 37.00 0.98
71 72 4.891756 CCAGGTGGCTTCAAGATTGATAAT 59.108 41.667 0.00 0.00 37.00 1.28
72 73 4.272489 CCAGGTGGCTTCAAGATTGATAA 58.728 43.478 0.00 0.00 37.00 1.75
73 74 3.889815 CCAGGTGGCTTCAAGATTGATA 58.110 45.455 0.00 0.00 37.00 2.15
74 75 2.731572 CCAGGTGGCTTCAAGATTGAT 58.268 47.619 0.00 0.00 37.00 2.57
75 76 2.205022 CCAGGTGGCTTCAAGATTGA 57.795 50.000 0.00 0.00 34.92 2.57
89 90 2.776526 TGACCACCCTTGCCAGGT 60.777 61.111 2.68 0.00 38.79 4.00
90 91 2.034687 CTGACCACCCTTGCCAGG 59.965 66.667 0.00 0.00 40.45 4.45
91 92 2.674380 GCTGACCACCCTTGCCAG 60.674 66.667 0.00 0.00 0.00 4.85
92 93 4.641645 CGCTGACCACCCTTGCCA 62.642 66.667 0.00 0.00 0.00 4.92
93 94 3.628646 ATCGCTGACCACCCTTGCC 62.629 63.158 0.00 0.00 0.00 4.52
94 95 2.045926 ATCGCTGACCACCCTTGC 60.046 61.111 0.00 0.00 0.00 4.01
95 96 0.824109 TAGATCGCTGACCACCCTTG 59.176 55.000 0.00 0.00 0.00 3.61
96 97 1.568504 TTAGATCGCTGACCACCCTT 58.431 50.000 0.00 0.00 0.00 3.95
97 98 1.689273 GATTAGATCGCTGACCACCCT 59.311 52.381 0.00 0.00 0.00 4.34
98 99 1.689273 AGATTAGATCGCTGACCACCC 59.311 52.381 0.00 0.00 0.00 4.61
99 100 4.585955 TTAGATTAGATCGCTGACCACC 57.414 45.455 0.00 0.00 0.00 4.61
100 101 6.238130 GGTTTTTAGATTAGATCGCTGACCAC 60.238 42.308 0.00 0.00 0.00 4.16
101 102 5.815740 GGTTTTTAGATTAGATCGCTGACCA 59.184 40.000 0.00 0.00 0.00 4.02
102 103 5.815740 TGGTTTTTAGATTAGATCGCTGACC 59.184 40.000 0.00 0.00 0.00 4.02
103 104 6.312918 TGTGGTTTTTAGATTAGATCGCTGAC 59.687 38.462 0.00 0.00 0.00 3.51
104 105 6.403049 TGTGGTTTTTAGATTAGATCGCTGA 58.597 36.000 0.00 0.00 0.00 4.26
105 106 6.662414 TGTGGTTTTTAGATTAGATCGCTG 57.338 37.500 0.00 0.00 0.00 5.18
187 188 5.427806 GGGACTGGGTTAATAGGTTAGTCTT 59.572 44.000 0.00 0.00 34.89 3.01
247 253 7.360361 AGACTTCGTTTGGTATTGATTTTGTC 58.640 34.615 0.00 0.00 0.00 3.18
249 255 9.672086 TTTAGACTTCGTTTGGTATTGATTTTG 57.328 29.630 0.00 0.00 0.00 2.44
292 298 6.443849 TCCCTTCTGGTATAGAAAACATCACT 59.556 38.462 0.00 0.00 44.47 3.41
298 304 4.081254 ACGGTCCCTTCTGGTATAGAAAAC 60.081 45.833 0.00 0.00 44.47 2.43
305 311 3.231818 CATCTACGGTCCCTTCTGGTAT 58.768 50.000 0.00 0.00 34.77 2.73
306 312 2.024655 ACATCTACGGTCCCTTCTGGTA 60.025 50.000 0.00 0.00 34.77 3.25
398 404 1.494824 GTCAAGCGAAGTTACGTGGT 58.505 50.000 0.00 0.00 35.59 4.16
409 415 3.260884 AGTCTTGGAATTAGGTCAAGCGA 59.739 43.478 0.00 0.00 38.13 4.93
469 475 2.424246 GTGGCGGGAAAAATATTTCGGA 59.576 45.455 0.10 0.00 44.83 4.55
476 482 1.889829 CTTGTGGTGGCGGGAAAAATA 59.110 47.619 0.00 0.00 0.00 1.40
485 492 0.738389 AACTGAAACTTGTGGTGGCG 59.262 50.000 0.00 0.00 0.00 5.69
501 508 0.613777 GATGGGACCACGGAAGAACT 59.386 55.000 0.00 0.00 0.00 3.01
513 521 2.095461 GAAAAGGCCTTCAGATGGGAC 58.905 52.381 20.79 0.00 0.00 4.46
523 531 3.263681 GGTAGAGTACTGGAAAAGGCCTT 59.736 47.826 13.78 13.78 0.00 4.35
565 573 3.868754 GCAAGGACGATGTAGAAACCCTT 60.869 47.826 0.00 0.00 33.25 3.95
594 603 4.506654 GGTAAACTATTCACGCATCATCGT 59.493 41.667 0.00 0.00 44.35 3.73
674 684 7.467557 TTTCAGCAGAAAATGATTGTTTGAC 57.532 32.000 1.23 0.00 40.61 3.18
675 685 8.665643 AATTTCAGCAGAAAATGATTGTTTGA 57.334 26.923 8.45 0.00 46.06 2.69
678 688 9.768662 ACTTAATTTCAGCAGAAAATGATTGTT 57.231 25.926 8.45 0.00 46.06 2.83
717 956 0.033601 TGGCTGTTTCACAACCACCT 60.034 50.000 0.00 0.00 39.25 4.00
762 1001 1.429463 GTCTCCGGTGTGATTGTGAC 58.571 55.000 0.00 0.00 0.00 3.67
837 1076 2.908073 GCCACTCCAACAGCAACGG 61.908 63.158 0.00 0.00 0.00 4.44
854 1093 2.047179 GACGGAGGTGGTTGAGGC 60.047 66.667 0.00 0.00 0.00 4.70
1135 1387 2.063378 CCTCCTCCTCACCCTCTGC 61.063 68.421 0.00 0.00 0.00 4.26
1137 1389 2.366570 GCCTCCTCCTCACCCTCT 59.633 66.667 0.00 0.00 0.00 3.69
1373 1626 1.761174 GGTCAGTGGAAGAAGGGCA 59.239 57.895 0.00 0.00 0.00 5.36
1420 1674 4.101119 ACTTGAGCTTACACAGTAACCACT 59.899 41.667 0.00 0.00 34.42 4.00
1449 1703 5.921976 ACAAGAACACAAATACATGCATGTG 59.078 36.000 36.72 24.84 46.52 3.21
1602 1856 9.125026 AGTCAATCATATCCCACTAACATTTTC 57.875 33.333 0.00 0.00 0.00 2.29
1636 1891 6.238897 CGAGCAGATTACATCTTTAGTCTCCT 60.239 42.308 0.00 0.00 37.58 3.69
1643 1898 4.672587 AGCCGAGCAGATTACATCTTTA 57.327 40.909 0.00 0.00 37.58 1.85
1708 2045 2.740668 GCACATGGCGTTTGAATGG 58.259 52.632 0.00 0.00 0.00 3.16
1741 2078 5.424121 ACTCACGGAATTTCACAAAAGAG 57.576 39.130 0.00 0.00 0.00 2.85
1743 2080 5.577835 TGAACTCACGGAATTTCACAAAAG 58.422 37.500 0.00 0.00 0.00 2.27
1748 2085 4.749245 ACATGAACTCACGGAATTTCAC 57.251 40.909 0.00 0.00 30.99 3.18
1826 2164 9.988350 AGTATAATTTTATCGAGTTTGCTTGTG 57.012 29.630 0.00 0.00 0.00 3.33
1831 2169 9.564041 CACGTAGTATAATTTTATCGAGTTTGC 57.436 33.333 0.00 0.00 41.61 3.68
1858 2196 2.419297 GGGATTGTGGTCAGCTCACTAG 60.419 54.545 5.71 0.00 36.21 2.57
1874 2212 2.109229 ACAGGGAGATGATCGGGATT 57.891 50.000 0.00 0.00 0.00 3.01
1877 2215 0.598562 CGTACAGGGAGATGATCGGG 59.401 60.000 0.00 0.00 0.00 5.14
1878 2216 1.001268 CACGTACAGGGAGATGATCGG 60.001 57.143 0.00 0.00 0.00 4.18
1879 2217 1.001268 CCACGTACAGGGAGATGATCG 60.001 57.143 0.00 0.00 0.00 3.69
1880 2218 2.307768 TCCACGTACAGGGAGATGATC 58.692 52.381 0.00 0.00 0.00 2.92
1881 2219 2.454336 TCCACGTACAGGGAGATGAT 57.546 50.000 0.00 0.00 0.00 2.45
1882 2220 2.031870 CATCCACGTACAGGGAGATGA 58.968 52.381 8.33 0.00 36.45 2.92
1883 2221 2.031870 TCATCCACGTACAGGGAGATG 58.968 52.381 8.33 9.16 36.45 2.90
1884 2222 2.032620 GTCATCCACGTACAGGGAGAT 58.967 52.381 8.33 0.00 36.45 2.75
1885 2223 1.471119 GTCATCCACGTACAGGGAGA 58.529 55.000 8.33 4.11 36.45 3.71
1886 2224 0.100682 CGTCATCCACGTACAGGGAG 59.899 60.000 8.33 2.20 44.07 4.30
1887 2225 2.186155 CGTCATCCACGTACAGGGA 58.814 57.895 5.07 5.07 44.07 4.20
1888 2226 4.806571 CGTCATCCACGTACAGGG 57.193 61.111 0.00 0.00 44.07 4.45
1901 2239 1.550072 TGGCAGAAGATGATGACGTCA 59.450 47.619 22.48 22.48 42.06 4.35
1902 2240 1.929836 GTGGCAGAAGATGATGACGTC 59.070 52.381 9.11 9.11 0.00 4.34
1903 2241 1.406069 GGTGGCAGAAGATGATGACGT 60.406 52.381 0.00 0.00 0.00 4.34
1904 2242 1.293924 GGTGGCAGAAGATGATGACG 58.706 55.000 0.00 0.00 0.00 4.35
1905 2243 1.673168 GGGTGGCAGAAGATGATGAC 58.327 55.000 0.00 0.00 0.00 3.06
1906 2244 0.548031 GGGGTGGCAGAAGATGATGA 59.452 55.000 0.00 0.00 0.00 2.92
1907 2245 0.549950 AGGGGTGGCAGAAGATGATG 59.450 55.000 0.00 0.00 0.00 3.07
1908 2246 0.842635 GAGGGGTGGCAGAAGATGAT 59.157 55.000 0.00 0.00 0.00 2.45
1909 2247 1.617018 CGAGGGGTGGCAGAAGATGA 61.617 60.000 0.00 0.00 0.00 2.92
1910 2248 1.153289 CGAGGGGTGGCAGAAGATG 60.153 63.158 0.00 0.00 0.00 2.90
1911 2249 2.370445 CCGAGGGGTGGCAGAAGAT 61.370 63.158 0.00 0.00 0.00 2.40
1912 2250 3.003173 CCGAGGGGTGGCAGAAGA 61.003 66.667 0.00 0.00 0.00 2.87
1935 2273 3.248171 GCGGACATCGAGCGTGTC 61.248 66.667 8.79 8.79 44.01 3.67
1936 2274 3.567478 TTGCGGACATCGAGCGTGT 62.567 57.895 0.00 0.00 42.43 4.49
1937 2275 2.792290 CTTGCGGACATCGAGCGTG 61.792 63.158 0.00 0.00 42.43 5.34
1938 2276 2.284798 ATCTTGCGGACATCGAGCGT 62.285 55.000 0.00 0.00 42.43 5.07
1939 2277 1.543941 GATCTTGCGGACATCGAGCG 61.544 60.000 0.00 0.00 42.43 5.03
1940 2278 1.218230 GGATCTTGCGGACATCGAGC 61.218 60.000 0.00 0.00 42.43 5.03
1941 2279 0.387202 AGGATCTTGCGGACATCGAG 59.613 55.000 0.00 0.00 42.43 4.04
1942 2280 0.103026 CAGGATCTTGCGGACATCGA 59.897 55.000 0.00 0.00 42.43 3.59
1943 2281 1.493950 GCAGGATCTTGCGGACATCG 61.494 60.000 14.56 0.00 42.76 3.84
1944 2282 2.315246 GCAGGATCTTGCGGACATC 58.685 57.895 14.56 0.00 33.90 3.06
1945 2283 4.547859 GCAGGATCTTGCGGACAT 57.452 55.556 14.56 0.00 33.90 3.06
1951 2289 4.959399 AGAGCTGCAGGATCTTGC 57.041 55.556 22.04 22.04 37.40 4.01
1954 2292 0.394080 GCCAAAGAGCTGCAGGATCT 60.394 55.000 17.12 6.98 43.16 2.75
1955 2293 1.382692 GGCCAAAGAGCTGCAGGATC 61.383 60.000 17.12 4.54 0.00 3.36
1956 2294 1.379576 GGCCAAAGAGCTGCAGGAT 60.380 57.895 17.12 0.00 0.00 3.24
1957 2295 2.034687 GGCCAAAGAGCTGCAGGA 59.965 61.111 17.12 0.00 0.00 3.86
1958 2296 3.437795 CGGCCAAAGAGCTGCAGG 61.438 66.667 17.12 0.00 31.10 4.85
1959 2297 2.359107 TCGGCCAAAGAGCTGCAG 60.359 61.111 10.11 10.11 39.10 4.41
1960 2298 2.359107 CTCGGCCAAAGAGCTGCA 60.359 61.111 2.24 0.00 39.10 4.41
1965 2303 1.094073 CCTGATGCTCGGCCAAAGAG 61.094 60.000 2.24 2.08 38.68 2.85
1966 2304 1.078214 CCTGATGCTCGGCCAAAGA 60.078 57.895 2.24 0.00 0.00 2.52
1967 2305 2.768492 GCCTGATGCTCGGCCAAAG 61.768 63.158 2.24 0.00 40.43 2.77
1968 2306 2.751436 GCCTGATGCTCGGCCAAA 60.751 61.111 2.24 0.00 40.43 3.28
1972 2310 1.670406 CATAGGCCTGATGCTCGGC 60.670 63.158 17.99 0.00 45.55 5.54
1973 2311 1.004080 CCATAGGCCTGATGCTCGG 60.004 63.158 17.99 0.76 40.92 4.63
1974 2312 1.004080 CCCATAGGCCTGATGCTCG 60.004 63.158 17.99 3.24 40.92 5.03
1975 2313 0.036022 GACCCATAGGCCTGATGCTC 59.964 60.000 17.99 8.49 40.92 4.26
1976 2314 0.695462 TGACCCATAGGCCTGATGCT 60.695 55.000 17.99 3.33 40.92 3.79
1977 2315 0.183492 TTGACCCATAGGCCTGATGC 59.817 55.000 17.99 0.00 36.11 3.91
1978 2316 2.965671 ATTGACCCATAGGCCTGATG 57.034 50.000 17.99 14.57 36.11 3.07
1979 2317 3.437052 GGAAATTGACCCATAGGCCTGAT 60.437 47.826 17.99 1.82 36.11 2.90
1980 2318 2.091885 GGAAATTGACCCATAGGCCTGA 60.092 50.000 17.99 0.00 36.11 3.86
1981 2319 2.310538 GGAAATTGACCCATAGGCCTG 58.689 52.381 17.99 0.00 36.11 4.85
1982 2320 1.929494 TGGAAATTGACCCATAGGCCT 59.071 47.619 11.78 11.78 36.11 5.19
1983 2321 2.091885 TCTGGAAATTGACCCATAGGCC 60.092 50.000 0.00 0.00 36.11 5.19
1984 2322 3.297134 TCTGGAAATTGACCCATAGGC 57.703 47.619 0.00 0.00 36.11 3.93
1985 2323 5.116084 TCTTCTGGAAATTGACCCATAGG 57.884 43.478 0.00 0.00 40.04 2.57
1986 2324 4.578105 GCTCTTCTGGAAATTGACCCATAG 59.422 45.833 0.00 0.00 0.00 2.23
1987 2325 4.018506 TGCTCTTCTGGAAATTGACCCATA 60.019 41.667 0.00 0.00 0.00 2.74
1988 2326 3.245371 TGCTCTTCTGGAAATTGACCCAT 60.245 43.478 0.00 0.00 0.00 4.00
1989 2327 2.108075 TGCTCTTCTGGAAATTGACCCA 59.892 45.455 0.00 0.00 0.00 4.51
1990 2328 2.489722 GTGCTCTTCTGGAAATTGACCC 59.510 50.000 0.43 0.00 0.00 4.46
1991 2329 2.489722 GGTGCTCTTCTGGAAATTGACC 59.510 50.000 0.00 0.00 0.00 4.02
1992 2330 2.160417 CGGTGCTCTTCTGGAAATTGAC 59.840 50.000 0.00 0.00 0.00 3.18
1993 2331 2.426522 CGGTGCTCTTCTGGAAATTGA 58.573 47.619 0.00 0.00 0.00 2.57
1994 2332 1.135575 GCGGTGCTCTTCTGGAAATTG 60.136 52.381 0.00 0.00 0.00 2.32
1995 2333 1.168714 GCGGTGCTCTTCTGGAAATT 58.831 50.000 0.00 0.00 0.00 1.82
1996 2334 0.678048 GGCGGTGCTCTTCTGGAAAT 60.678 55.000 0.00 0.00 0.00 2.17
1997 2335 1.302511 GGCGGTGCTCTTCTGGAAA 60.303 57.895 0.00 0.00 0.00 3.13
1998 2336 2.347490 GGCGGTGCTCTTCTGGAA 59.653 61.111 0.00 0.00 0.00 3.53
1999 2337 2.922503 TGGCGGTGCTCTTCTGGA 60.923 61.111 0.00 0.00 0.00 3.86
2000 2338 2.743928 GTGGCGGTGCTCTTCTGG 60.744 66.667 0.00 0.00 0.00 3.86
2001 2339 2.031516 CAGTGGCGGTGCTCTTCTG 61.032 63.158 0.00 0.00 0.00 3.02
2002 2340 2.345244 CAGTGGCGGTGCTCTTCT 59.655 61.111 0.00 0.00 0.00 2.85
2003 2341 3.426568 GCAGTGGCGGTGCTCTTC 61.427 66.667 3.77 0.00 37.96 2.87
2013 2351 3.643978 GCATCGGATCGCAGTGGC 61.644 66.667 7.30 0.00 0.00 5.01
2014 2352 3.333189 CGCATCGGATCGCAGTGG 61.333 66.667 11.19 0.00 0.00 4.00
2015 2353 1.662760 ATCGCATCGGATCGCAGTG 60.663 57.895 11.19 0.00 0.00 3.66
2016 2354 1.662760 CATCGCATCGGATCGCAGT 60.663 57.895 11.19 0.00 0.00 4.40
2017 2355 1.372128 TCATCGCATCGGATCGCAG 60.372 57.895 11.19 5.93 0.00 5.18
2018 2356 1.661509 GTCATCGCATCGGATCGCA 60.662 57.895 11.19 2.22 0.00 5.10
2019 2357 2.710971 CGTCATCGCATCGGATCGC 61.711 63.158 0.00 0.00 0.00 4.58
2020 2358 1.062336 CTCGTCATCGCATCGGATCG 61.062 60.000 0.00 0.00 36.96 3.69
2021 2359 0.730834 CCTCGTCATCGCATCGGATC 60.731 60.000 0.00 0.00 36.96 3.36
2022 2360 1.172812 TCCTCGTCATCGCATCGGAT 61.173 55.000 0.00 0.00 36.96 4.18
2023 2361 1.786049 CTCCTCGTCATCGCATCGGA 61.786 60.000 0.00 0.00 36.96 4.55
2024 2362 1.371022 CTCCTCGTCATCGCATCGG 60.371 63.158 0.00 0.00 36.96 4.18
2025 2363 1.371022 CCTCCTCGTCATCGCATCG 60.371 63.158 0.00 0.00 36.96 3.84
2026 2364 0.318275 GACCTCCTCGTCATCGCATC 60.318 60.000 0.00 0.00 36.96 3.91
2027 2365 1.736586 GACCTCCTCGTCATCGCAT 59.263 57.895 0.00 0.00 36.96 4.73
2028 2366 2.761195 CGACCTCCTCGTCATCGCA 61.761 63.158 0.00 0.00 37.64 5.10
2029 2367 2.024871 CGACCTCCTCGTCATCGC 59.975 66.667 0.00 0.00 37.64 4.58
2030 2368 2.716244 CCGACCTCCTCGTCATCG 59.284 66.667 0.00 0.00 41.18 3.84
2031 2369 2.413765 GCCGACCTCCTCGTCATC 59.586 66.667 0.00 0.00 41.18 2.92
2032 2370 3.148279 GGCCGACCTCCTCGTCAT 61.148 66.667 0.00 0.00 41.18 3.06
2033 2371 4.361971 AGGCCGACCTCCTCGTCA 62.362 66.667 0.00 0.00 46.34 4.35
2034 2372 3.827898 CAGGCCGACCTCCTCGTC 61.828 72.222 0.00 0.00 46.34 4.20
2074 2412 2.105960 GATTGGGAATTCCGCGAGCG 62.106 60.000 18.30 10.86 38.76 5.03
2075 2413 1.095228 TGATTGGGAATTCCGCGAGC 61.095 55.000 18.30 13.51 38.76 5.03
2076 2414 0.657840 GTGATTGGGAATTCCGCGAG 59.342 55.000 18.30 0.00 38.76 5.03
2077 2415 0.746563 GGTGATTGGGAATTCCGCGA 60.747 55.000 18.30 11.24 38.76 5.87
2078 2416 0.748005 AGGTGATTGGGAATTCCGCG 60.748 55.000 18.30 0.00 38.76 6.46
2079 2417 1.947456 GTAGGTGATTGGGAATTCCGC 59.053 52.381 18.30 11.61 38.76 5.54
2080 2418 2.172717 AGGTAGGTGATTGGGAATTCCG 59.827 50.000 18.30 0.00 38.76 4.30
2081 2419 3.555966 CAGGTAGGTGATTGGGAATTCC 58.444 50.000 16.74 16.74 0.00 3.01
2082 2420 3.555966 CCAGGTAGGTGATTGGGAATTC 58.444 50.000 0.00 0.00 0.00 2.17
2083 2421 3.669939 CCAGGTAGGTGATTGGGAATT 57.330 47.619 0.00 0.00 0.00 2.17
2088 2426 2.158608 GGATTCCCAGGTAGGTGATTGG 60.159 54.545 0.00 0.00 34.66 3.16
2089 2427 2.158608 GGGATTCCCAGGTAGGTGATTG 60.159 54.545 17.36 0.00 44.65 2.67
2090 2428 2.136026 GGGATTCCCAGGTAGGTGATT 58.864 52.381 17.36 0.00 44.65 2.57
2091 2429 1.821088 GGGATTCCCAGGTAGGTGAT 58.179 55.000 17.36 0.00 44.65 3.06
2092 2430 3.334769 GGGATTCCCAGGTAGGTGA 57.665 57.895 17.36 0.00 44.65 4.02
2103 2441 2.079288 GGAGGGTGAGGGGGATTCC 61.079 68.421 0.00 0.00 0.00 3.01
2104 2442 2.444256 CGGAGGGTGAGGGGGATTC 61.444 68.421 0.00 0.00 0.00 2.52
2105 2443 2.366972 CGGAGGGTGAGGGGGATT 60.367 66.667 0.00 0.00 0.00 3.01
2106 2444 3.364964 TCGGAGGGTGAGGGGGAT 61.365 66.667 0.00 0.00 0.00 3.85
2107 2445 4.393778 GTCGGAGGGTGAGGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
2136 2474 4.432741 GAGGGGTTGGAGCTGGGC 62.433 72.222 0.00 0.00 0.00 5.36
2137 2475 4.101448 CGAGGGGTTGGAGCTGGG 62.101 72.222 0.00 0.00 0.00 4.45
2138 2476 2.895424 AACGAGGGGTTGGAGCTGG 61.895 63.158 0.00 0.00 37.50 4.85
2139 2477 2.750350 AACGAGGGGTTGGAGCTG 59.250 61.111 0.00 0.00 37.50 4.24
2146 2484 1.395635 GGTTTTGTCAACGAGGGGTT 58.604 50.000 0.00 0.00 40.22 4.11
2147 2485 0.816421 CGGTTTTGTCAACGAGGGGT 60.816 55.000 0.00 0.00 0.00 4.95
2148 2486 1.946267 CGGTTTTGTCAACGAGGGG 59.054 57.895 0.00 0.00 0.00 4.79
2149 2487 1.281656 GCGGTTTTGTCAACGAGGG 59.718 57.895 0.00 0.00 0.00 4.30
2150 2488 1.281656 GGCGGTTTTGTCAACGAGG 59.718 57.895 0.00 0.00 0.00 4.63
2151 2489 1.083015 CGGCGGTTTTGTCAACGAG 60.083 57.895 0.00 0.00 0.00 4.18
2152 2490 2.535788 CCGGCGGTTTTGTCAACGA 61.536 57.895 19.97 0.00 0.00 3.85
2153 2491 2.051703 CCGGCGGTTTTGTCAACG 60.052 61.111 19.97 0.00 0.00 4.10
2154 2492 1.726533 TTCCCGGCGGTTTTGTCAAC 61.727 55.000 26.32 0.00 0.00 3.18
2155 2493 1.448922 CTTCCCGGCGGTTTTGTCAA 61.449 55.000 26.32 4.61 0.00 3.18
2156 2494 1.894756 CTTCCCGGCGGTTTTGTCA 60.895 57.895 26.32 0.00 0.00 3.58
2157 2495 2.951458 CTTCCCGGCGGTTTTGTC 59.049 61.111 26.32 0.00 0.00 3.18
2158 2496 3.292159 GCTTCCCGGCGGTTTTGT 61.292 61.111 26.32 0.00 0.00 2.83
2159 2497 2.983592 AGCTTCCCGGCGGTTTTG 60.984 61.111 26.32 9.60 37.29 2.44
2160 2498 2.983592 CAGCTTCCCGGCGGTTTT 60.984 61.111 26.32 2.30 37.29 2.43
2169 2507 4.748144 CCAGGTGGCCAGCTTCCC 62.748 72.222 34.41 18.18 36.98 3.97
2170 2508 2.713531 TTTCCAGGTGGCCAGCTTCC 62.714 60.000 34.41 18.60 36.98 3.46
2171 2509 1.228552 TTTCCAGGTGGCCAGCTTC 60.229 57.895 34.41 8.86 36.98 3.86
2172 2510 1.228675 CTTTCCAGGTGGCCAGCTT 60.229 57.895 34.41 17.25 36.98 3.74
2173 2511 2.437897 CTTTCCAGGTGGCCAGCT 59.562 61.111 31.61 31.61 40.20 4.24
2174 2512 3.376918 GCTTTCCAGGTGGCCAGC 61.377 66.667 27.66 27.66 34.35 4.85
2175 2513 2.677875 GGCTTTCCAGGTGGCCAG 60.678 66.667 5.11 0.00 43.59 4.85
2176 2514 4.299796 GGGCTTTCCAGGTGGCCA 62.300 66.667 0.00 0.00 45.68 5.36
2177 2515 4.299796 TGGGCTTTCCAGGTGGCC 62.300 66.667 0.00 0.00 41.46 5.36
2184 2522 0.776810 TTCATGAGGTGGGCTTTCCA 59.223 50.000 0.00 0.00 44.79 3.53
2185 2523 1.177401 GTTCATGAGGTGGGCTTTCC 58.823 55.000 0.00 0.00 0.00 3.13
2186 2524 1.909700 TGTTCATGAGGTGGGCTTTC 58.090 50.000 0.00 0.00 0.00 2.62
2187 2525 2.380064 TTGTTCATGAGGTGGGCTTT 57.620 45.000 0.00 0.00 0.00 3.51
2188 2526 2.242043 CTTTGTTCATGAGGTGGGCTT 58.758 47.619 0.00 0.00 0.00 4.35
2189 2527 1.915141 CTTTGTTCATGAGGTGGGCT 58.085 50.000 0.00 0.00 0.00 5.19
2190 2528 0.244721 GCTTTGTTCATGAGGTGGGC 59.755 55.000 0.00 0.00 0.00 5.36
2191 2529 0.890683 GGCTTTGTTCATGAGGTGGG 59.109 55.000 0.00 0.00 0.00 4.61
2192 2530 0.523072 CGGCTTTGTTCATGAGGTGG 59.477 55.000 0.00 0.00 0.00 4.61
2193 2531 0.523072 CCGGCTTTGTTCATGAGGTG 59.477 55.000 0.00 0.00 0.00 4.00
2194 2532 0.400213 TCCGGCTTTGTTCATGAGGT 59.600 50.000 0.00 0.00 0.00 3.85
2195 2533 0.804989 GTCCGGCTTTGTTCATGAGG 59.195 55.000 0.00 0.00 0.00 3.86
2196 2534 0.443869 CGTCCGGCTTTGTTCATGAG 59.556 55.000 0.00 0.00 0.00 2.90
2197 2535 0.250124 ACGTCCGGCTTTGTTCATGA 60.250 50.000 0.00 0.00 0.00 3.07
2198 2536 0.165944 GACGTCCGGCTTTGTTCATG 59.834 55.000 3.51 0.00 0.00 3.07
2199 2537 0.034896 AGACGTCCGGCTTTGTTCAT 59.965 50.000 13.01 0.00 0.00 2.57
2200 2538 0.599204 GAGACGTCCGGCTTTGTTCA 60.599 55.000 13.01 0.00 30.74 3.18
2201 2539 1.615107 CGAGACGTCCGGCTTTGTTC 61.615 60.000 13.01 0.00 30.74 3.18
2202 2540 1.663702 CGAGACGTCCGGCTTTGTT 60.664 57.895 13.01 0.00 30.74 2.83
2203 2541 2.049433 CGAGACGTCCGGCTTTGT 60.049 61.111 13.01 0.00 30.74 2.83
2204 2542 3.479269 GCGAGACGTCCGGCTTTG 61.479 66.667 22.10 6.60 30.74 2.77
2205 2543 4.736896 GGCGAGACGTCCGGCTTT 62.737 66.667 31.00 8.78 46.94 3.51
2209 2547 2.809601 CAAAGGCGAGACGTCCGG 60.810 66.667 22.10 12.49 28.67 5.14
2210 2548 2.049433 ACAAAGGCGAGACGTCCG 60.049 61.111 13.01 16.26 28.67 4.79
2211 2549 0.599204 TTGACAAAGGCGAGACGTCC 60.599 55.000 13.01 2.76 28.67 4.79
2212 2550 1.192534 CTTTGACAAAGGCGAGACGTC 59.807 52.381 18.52 7.70 34.85 4.34
2213 2551 1.217882 CTTTGACAAAGGCGAGACGT 58.782 50.000 18.52 0.00 34.85 4.34
2214 2552 0.110644 GCTTTGACAAAGGCGAGACG 60.111 55.000 25.44 3.09 38.93 4.18
2215 2553 1.069636 CAGCTTTGACAAAGGCGAGAC 60.070 52.381 25.44 10.55 42.90 3.36
2216 2554 1.229428 CAGCTTTGACAAAGGCGAGA 58.771 50.000 25.44 0.00 42.90 4.04
2217 2555 0.947244 ACAGCTTTGACAAAGGCGAG 59.053 50.000 25.44 17.42 42.90 5.03
2218 2556 0.662619 CACAGCTTTGACAAAGGCGA 59.337 50.000 25.44 0.00 42.90 5.54
2219 2557 0.936297 GCACAGCTTTGACAAAGGCG 60.936 55.000 25.44 16.16 42.90 5.52
2220 2558 0.936297 CGCACAGCTTTGACAAAGGC 60.936 55.000 25.44 19.15 38.93 4.35
2221 2559 0.662619 TCGCACAGCTTTGACAAAGG 59.337 50.000 25.44 14.38 38.93 3.11
2222 2560 2.378806 CTTCGCACAGCTTTGACAAAG 58.621 47.619 21.34 21.34 41.46 2.77
2223 2561 1.533756 GCTTCGCACAGCTTTGACAAA 60.534 47.619 3.47 0.00 36.79 2.83
2224 2562 0.029300 GCTTCGCACAGCTTTGACAA 59.971 50.000 3.47 0.00 36.79 3.18
2225 2563 1.648720 GCTTCGCACAGCTTTGACA 59.351 52.632 3.47 0.00 36.79 3.58
2226 2564 1.439365 CGCTTCGCACAGCTTTGAC 60.439 57.895 3.47 0.00 37.68 3.18
2227 2565 2.938253 CGCTTCGCACAGCTTTGA 59.062 55.556 3.47 0.00 37.68 2.69
2238 2576 2.022129 GTATGGGGATCGCGCTTCG 61.022 63.158 5.56 0.00 40.15 3.79
2239 2577 1.069090 TGTATGGGGATCGCGCTTC 59.931 57.895 5.56 1.70 0.00 3.86
2240 2578 1.227556 GTGTATGGGGATCGCGCTT 60.228 57.895 5.56 0.00 0.00 4.68
2241 2579 2.421739 GTGTATGGGGATCGCGCT 59.578 61.111 5.56 0.00 0.00 5.92
2242 2580 2.665185 GGTGTATGGGGATCGCGC 60.665 66.667 0.00 0.00 0.00 6.86
2243 2581 1.300931 CTGGTGTATGGGGATCGCG 60.301 63.158 0.00 0.00 0.00 5.87
2244 2582 1.598130 GCTGGTGTATGGGGATCGC 60.598 63.158 0.06 0.06 0.00 4.58
2245 2583 0.034059 GAGCTGGTGTATGGGGATCG 59.966 60.000 0.00 0.00 0.00 3.69
2246 2584 0.398318 GGAGCTGGTGTATGGGGATC 59.602 60.000 0.00 0.00 0.00 3.36
2247 2585 0.029681 AGGAGCTGGTGTATGGGGAT 60.030 55.000 0.00 0.00 0.00 3.85
2248 2586 0.982852 CAGGAGCTGGTGTATGGGGA 60.983 60.000 0.00 0.00 0.00 4.81
2249 2587 1.528824 CAGGAGCTGGTGTATGGGG 59.471 63.158 0.00 0.00 0.00 4.96
2250 2588 1.528824 CCAGGAGCTGGTGTATGGG 59.471 63.158 0.00 0.00 45.82 4.00
2271 2609 2.876368 ATCTTCTTTGGGGGCGCGAG 62.876 60.000 12.10 0.00 0.00 5.03
2272 2610 2.869503 GATCTTCTTTGGGGGCGCGA 62.870 60.000 12.10 0.00 0.00 5.87
2273 2611 2.438434 ATCTTCTTTGGGGGCGCG 60.438 61.111 0.00 0.00 0.00 6.86
2274 2612 0.753111 ATGATCTTCTTTGGGGGCGC 60.753 55.000 0.00 0.00 0.00 6.53
2275 2613 1.312815 GATGATCTTCTTTGGGGGCG 58.687 55.000 1.42 0.00 0.00 6.13
2276 2614 2.442236 TGATGATCTTCTTTGGGGGC 57.558 50.000 9.75 0.00 0.00 5.80
2277 2615 2.692041 GCTTGATGATCTTCTTTGGGGG 59.308 50.000 9.75 0.00 0.00 5.40
2278 2616 3.629087 AGCTTGATGATCTTCTTTGGGG 58.371 45.455 9.75 0.00 0.00 4.96
2279 2617 3.631227 GGAGCTTGATGATCTTCTTTGGG 59.369 47.826 9.75 0.00 0.00 4.12
2280 2618 4.335874 CAGGAGCTTGATGATCTTCTTTGG 59.664 45.833 9.75 0.11 0.00 3.28
2281 2619 4.335874 CCAGGAGCTTGATGATCTTCTTTG 59.664 45.833 9.75 2.14 0.00 2.77
2282 2620 4.226846 TCCAGGAGCTTGATGATCTTCTTT 59.773 41.667 9.75 0.00 0.00 2.52
2283 2621 3.779183 TCCAGGAGCTTGATGATCTTCTT 59.221 43.478 9.75 0.00 0.00 2.52
2284 2622 3.382278 TCCAGGAGCTTGATGATCTTCT 58.618 45.455 9.75 0.00 0.00 2.85
2285 2623 3.387374 TCTCCAGGAGCTTGATGATCTTC 59.613 47.826 12.26 1.67 0.00 2.87
2286 2624 3.382278 TCTCCAGGAGCTTGATGATCTT 58.618 45.455 12.26 0.00 0.00 2.40
2287 2625 3.043465 TCTCCAGGAGCTTGATGATCT 57.957 47.619 12.26 0.00 0.00 2.75
2288 2626 3.834489 TTCTCCAGGAGCTTGATGATC 57.166 47.619 12.26 0.00 0.00 2.92
2289 2627 4.581309 TTTTCTCCAGGAGCTTGATGAT 57.419 40.909 12.26 0.00 0.00 2.45
2290 2628 4.581309 ATTTTCTCCAGGAGCTTGATGA 57.419 40.909 12.26 0.00 0.00 2.92
2291 2629 4.703575 TGAATTTTCTCCAGGAGCTTGATG 59.296 41.667 12.26 0.00 0.00 3.07
2292 2630 4.927049 TGAATTTTCTCCAGGAGCTTGAT 58.073 39.130 12.26 0.44 0.00 2.57
2293 2631 4.371624 TGAATTTTCTCCAGGAGCTTGA 57.628 40.909 12.26 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.