Multiple sequence alignment - TraesCS6B01G345400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G345400 chr6B 100.000 5379 0 0 1 5379 609067133 609072511 0.000000e+00 9934.0
1 TraesCS6B01G345400 chr6B 79.237 236 42 4 4731 4961 684933742 684933509 2.010000e-34 158.0
2 TraesCS6B01G345400 chr6D 98.425 4063 54 4 1320 5379 405113538 405117593 0.000000e+00 7140.0
3 TraesCS6B01G345400 chr6D 87.207 641 25 18 512 1124 405112929 405113540 0.000000e+00 676.0
4 TraesCS6B01G345400 chr6A 95.364 2826 102 9 2565 5379 551650606 551653413 0.000000e+00 4466.0
5 TraesCS6B01G345400 chr6A 87.746 2081 164 49 512 2566 551648409 551650424 0.000000e+00 2346.0
6 TraesCS6B01G345400 chr6A 76.630 736 113 32 4675 5379 596584605 596583898 8.570000e-93 351.0
7 TraesCS6B01G345400 chr3D 83.648 159 25 1 1671 1828 439419727 439419569 1.210000e-31 148.0
8 TraesCS6B01G345400 chr7B 81.761 159 28 1 1671 1828 98985856 98985698 1.220000e-26 132.0
9 TraesCS6B01G345400 chr5B 81.761 159 28 1 1671 1828 439442838 439442680 1.220000e-26 132.0
10 TraesCS6B01G345400 chr1A 92.857 42 3 0 1787 1828 523123030 523122989 1.620000e-05 62.1
11 TraesCS6B01G345400 chr1A 92.857 42 3 0 1787 1828 523124415 523124374 1.620000e-05 62.1
12 TraesCS6B01G345400 chr1A 92.857 42 3 0 1787 1828 525005780 525005821 1.620000e-05 62.1
13 TraesCS6B01G345400 chr1A 94.595 37 2 0 1792 1828 523122009 523121973 2.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G345400 chr6B 609067133 609072511 5378 False 9934 9934 100.000 1 5379 1 chr6B.!!$F1 5378
1 TraesCS6B01G345400 chr6D 405112929 405117593 4664 False 3908 7140 92.816 512 5379 2 chr6D.!!$F1 4867
2 TraesCS6B01G345400 chr6A 551648409 551653413 5004 False 3406 4466 91.555 512 5379 2 chr6A.!!$F1 4867
3 TraesCS6B01G345400 chr6A 596583898 596584605 707 True 351 351 76.630 4675 5379 1 chr6A.!!$R1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 473 0.029577 ATCCCTTCTCTTCCCCTCCC 60.030 60.000 0.00 0.0 0.00 4.30 F
478 479 0.483328 TCTCTTCCCCTCCCTATCCG 59.517 60.000 0.00 0.0 0.00 4.18 F
479 480 0.543174 CTCTTCCCCTCCCTATCCGG 60.543 65.000 0.00 0.0 0.00 5.14 F
481 482 0.832559 CTTCCCCTCCCTATCCGGTC 60.833 65.000 0.00 0.0 0.00 4.79 F
515 516 1.074752 CTGCTTTGTCTCGCTTCTCC 58.925 55.000 0.00 0.0 0.00 3.71 F
809 836 1.091771 CGCATGACATCTGTCCACCC 61.092 60.000 7.81 0.0 44.15 4.61 F
1902 1941 1.135141 TGCGCAAAAATGACCCATAGC 60.135 47.619 8.16 0.0 0.00 2.97 F
3294 3536 2.704572 ACTCACACTAAAGAGCATGGC 58.295 47.619 0.00 0.0 35.28 4.40 F
4259 4501 3.695830 AATCTGCCGAAAAGGTCTGTA 57.304 42.857 0.00 0.0 43.70 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 1602 0.323725 AGGTACGGTTAAGAGGCGGA 60.324 55.000 0.00 0.00 0.00 5.54 R
1902 1941 1.064166 AGATGAGAAACATGGGCCAGG 60.064 52.381 18.06 18.06 39.56 4.45 R
2385 2426 3.009363 TCAATCTGCTCCTTCCAATGTGA 59.991 43.478 0.00 0.00 0.00 3.58 R
2387 2428 3.726557 TCAATCTGCTCCTTCCAATGT 57.273 42.857 0.00 0.00 0.00 2.71 R
2454 2510 5.985530 TGGACTATCGATCAAGCAATAACAG 59.014 40.000 0.00 0.00 0.00 3.16 R
2809 3051 0.321671 TAGCCACTGACTCAAGTGCC 59.678 55.000 0.00 0.00 45.17 5.01 R
3772 4014 2.191375 CAGCCCTCATCCATGCGT 59.809 61.111 0.00 0.00 0.00 5.24 R
4369 4611 0.615331 TTGACCATCCTCACTGCTCC 59.385 55.000 0.00 0.00 0.00 4.70 R
5140 5412 1.467734 GAGCAACACAGCATCCTCAAG 59.532 52.381 0.00 0.00 36.85 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.840981 GAAGAATTTCGCAATGCAAAATTTT 57.159 28.000 16.68 9.53 0.00 1.82
27 28 8.272436 GAAGAATTTCGCAATGCAAAATTTTT 57.728 26.923 16.68 16.61 0.00 1.94
72 73 8.609617 AACATCTATATTTCGGATCATAGGGA 57.390 34.615 0.00 0.00 0.00 4.20
73 74 8.243961 ACATCTATATTTCGGATCATAGGGAG 57.756 38.462 0.00 0.00 0.00 4.30
74 75 7.841729 ACATCTATATTTCGGATCATAGGGAGT 59.158 37.037 0.00 0.00 0.00 3.85
75 76 9.355916 CATCTATATTTCGGATCATAGGGAGTA 57.644 37.037 0.00 0.00 0.00 2.59
76 77 8.982091 TCTATATTTCGGATCATAGGGAGTAG 57.018 38.462 0.00 0.00 0.00 2.57
77 78 8.558312 TCTATATTTCGGATCATAGGGAGTAGT 58.442 37.037 0.00 0.00 0.00 2.73
78 79 5.986501 ATTTCGGATCATAGGGAGTAGTC 57.013 43.478 0.00 0.00 0.00 2.59
79 80 4.726035 TTCGGATCATAGGGAGTAGTCT 57.274 45.455 0.00 0.00 0.00 3.24
80 81 5.837770 TTCGGATCATAGGGAGTAGTCTA 57.162 43.478 0.00 0.00 0.00 2.59
81 82 6.390048 TTCGGATCATAGGGAGTAGTCTAT 57.610 41.667 0.00 0.00 0.00 1.98
82 83 7.506361 TTCGGATCATAGGGAGTAGTCTATA 57.494 40.000 0.00 0.00 0.00 1.31
83 84 7.693533 TCGGATCATAGGGAGTAGTCTATAT 57.306 40.000 0.00 0.00 0.00 0.86
84 85 8.103660 TCGGATCATAGGGAGTAGTCTATATT 57.896 38.462 0.00 0.00 0.00 1.28
85 86 9.222098 TCGGATCATAGGGAGTAGTCTATATTA 57.778 37.037 0.00 0.00 0.00 0.98
86 87 9.275398 CGGATCATAGGGAGTAGTCTATATTAC 57.725 40.741 0.00 0.00 0.00 1.89
93 94 7.363205 GGGAGTAGTCTATATTACTCACGTC 57.637 44.000 12.28 0.00 43.34 4.34
94 95 6.933521 GGGAGTAGTCTATATTACTCACGTCA 59.066 42.308 12.28 0.00 43.34 4.35
95 96 7.118101 GGGAGTAGTCTATATTACTCACGTCAG 59.882 44.444 12.28 0.00 43.34 3.51
96 97 7.871973 GGAGTAGTCTATATTACTCACGTCAGA 59.128 40.741 12.28 0.00 43.34 3.27
97 98 9.426837 GAGTAGTCTATATTACTCACGTCAGAT 57.573 37.037 0.00 0.00 41.94 2.90
98 99 9.210329 AGTAGTCTATATTACTCACGTCAGATG 57.790 37.037 0.00 0.00 0.00 2.90
99 100 8.991026 GTAGTCTATATTACTCACGTCAGATGT 58.009 37.037 0.00 0.00 0.00 3.06
101 102 9.210329 AGTCTATATTACTCACGTCAGATGTAG 57.790 37.037 0.00 0.00 0.00 2.74
102 103 7.958567 GTCTATATTACTCACGTCAGATGTAGC 59.041 40.741 0.00 0.00 0.00 3.58
103 104 4.983671 ATTACTCACGTCAGATGTAGCA 57.016 40.909 0.00 0.00 0.00 3.49
104 105 2.929531 ACTCACGTCAGATGTAGCAG 57.070 50.000 0.00 0.00 0.00 4.24
105 106 2.437413 ACTCACGTCAGATGTAGCAGA 58.563 47.619 0.00 0.00 0.00 4.26
106 107 2.820197 ACTCACGTCAGATGTAGCAGAA 59.180 45.455 0.00 0.00 0.00 3.02
107 108 3.175152 CTCACGTCAGATGTAGCAGAAC 58.825 50.000 0.00 0.00 0.00 3.01
108 109 2.094700 TCACGTCAGATGTAGCAGAACC 60.095 50.000 0.00 0.00 0.00 3.62
109 110 1.135373 ACGTCAGATGTAGCAGAACCG 60.135 52.381 0.00 0.00 0.00 4.44
110 111 1.135373 CGTCAGATGTAGCAGAACCGT 60.135 52.381 0.00 0.00 0.00 4.83
111 112 2.263077 GTCAGATGTAGCAGAACCGTG 58.737 52.381 0.00 0.00 0.00 4.94
112 113 1.002366 CAGATGTAGCAGAACCGTGC 58.998 55.000 0.00 0.00 44.35 5.34
113 114 0.108138 AGATGTAGCAGAACCGTGCC 60.108 55.000 0.00 0.00 45.20 5.01
114 115 0.391130 GATGTAGCAGAACCGTGCCA 60.391 55.000 0.00 0.00 45.20 4.92
115 116 0.391661 ATGTAGCAGAACCGTGCCAG 60.392 55.000 0.00 0.00 45.20 4.85
116 117 1.004918 GTAGCAGAACCGTGCCAGT 60.005 57.895 0.00 0.00 45.20 4.00
117 118 1.005037 TAGCAGAACCGTGCCAGTG 60.005 57.895 0.00 0.00 45.20 3.66
118 119 1.468506 TAGCAGAACCGTGCCAGTGA 61.469 55.000 0.00 0.00 45.20 3.41
119 120 1.672356 GCAGAACCGTGCCAGTGAT 60.672 57.895 0.00 0.00 37.49 3.06
120 121 1.237285 GCAGAACCGTGCCAGTGATT 61.237 55.000 0.00 0.00 37.49 2.57
121 122 1.238439 CAGAACCGTGCCAGTGATTT 58.762 50.000 0.00 0.00 0.00 2.17
122 123 1.197721 CAGAACCGTGCCAGTGATTTC 59.802 52.381 0.00 0.00 0.00 2.17
123 124 1.202758 AGAACCGTGCCAGTGATTTCA 60.203 47.619 0.00 0.00 0.00 2.69
124 125 1.812571 GAACCGTGCCAGTGATTTCAT 59.187 47.619 0.00 0.00 0.00 2.57
125 126 1.167851 ACCGTGCCAGTGATTTCATG 58.832 50.000 0.00 0.00 0.00 3.07
126 127 0.452987 CCGTGCCAGTGATTTCATGG 59.547 55.000 0.00 0.00 37.15 3.66
134 135 5.741388 CCAGTGATTTCATGGCTAACTAC 57.259 43.478 0.00 0.00 0.00 2.73
135 136 4.271049 CCAGTGATTTCATGGCTAACTACG 59.729 45.833 0.00 0.00 0.00 3.51
136 137 4.271049 CAGTGATTTCATGGCTAACTACGG 59.729 45.833 0.00 0.00 0.00 4.02
137 138 3.002348 GTGATTTCATGGCTAACTACGGC 59.998 47.826 0.00 0.00 0.00 5.68
142 143 4.717988 GGCTAACTACGGCCGTAC 57.282 61.111 33.45 22.36 38.91 3.67
143 144 2.110296 GGCTAACTACGGCCGTACT 58.890 57.895 33.45 24.14 38.91 2.73
144 145 1.308998 GGCTAACTACGGCCGTACTA 58.691 55.000 33.45 23.97 38.91 1.82
145 146 1.676006 GGCTAACTACGGCCGTACTAA 59.324 52.381 33.45 19.17 38.91 2.24
146 147 2.099098 GGCTAACTACGGCCGTACTAAA 59.901 50.000 33.45 16.01 38.91 1.85
147 148 3.108881 GCTAACTACGGCCGTACTAAAC 58.891 50.000 33.45 18.72 0.00 2.01
148 149 2.654749 AACTACGGCCGTACTAAACC 57.345 50.000 33.45 0.00 0.00 3.27
149 150 1.839424 ACTACGGCCGTACTAAACCT 58.161 50.000 33.45 9.29 0.00 3.50
150 151 2.999331 ACTACGGCCGTACTAAACCTA 58.001 47.619 33.45 12.80 0.00 3.08
151 152 2.945668 ACTACGGCCGTACTAAACCTAG 59.054 50.000 33.45 23.63 0.00 3.02
152 153 2.128771 ACGGCCGTACTAAACCTAGA 57.871 50.000 33.34 0.00 0.00 2.43
153 154 2.659428 ACGGCCGTACTAAACCTAGAT 58.341 47.619 33.34 0.00 0.00 1.98
154 155 3.820557 ACGGCCGTACTAAACCTAGATA 58.179 45.455 33.34 0.00 0.00 1.98
155 156 4.401925 ACGGCCGTACTAAACCTAGATAT 58.598 43.478 33.34 0.00 0.00 1.63
156 157 4.217118 ACGGCCGTACTAAACCTAGATATG 59.783 45.833 33.34 0.00 0.00 1.78
157 158 4.492611 GGCCGTACTAAACCTAGATATGC 58.507 47.826 0.00 0.00 0.00 3.14
158 159 4.220163 GGCCGTACTAAACCTAGATATGCT 59.780 45.833 0.00 0.00 0.00 3.79
159 160 5.162075 GCCGTACTAAACCTAGATATGCTG 58.838 45.833 0.00 0.00 0.00 4.41
160 161 5.162075 CCGTACTAAACCTAGATATGCTGC 58.838 45.833 0.00 0.00 0.00 5.25
161 162 4.852104 CGTACTAAACCTAGATATGCTGCG 59.148 45.833 0.00 0.00 0.00 5.18
162 163 4.939052 ACTAAACCTAGATATGCTGCGT 57.061 40.909 0.00 0.00 0.00 5.24
163 164 4.621991 ACTAAACCTAGATATGCTGCGTG 58.378 43.478 4.25 0.00 0.00 5.34
164 165 3.819564 AAACCTAGATATGCTGCGTGA 57.180 42.857 4.25 0.00 0.00 4.35
165 166 3.819564 AACCTAGATATGCTGCGTGAA 57.180 42.857 4.25 0.00 0.00 3.18
166 167 4.342862 AACCTAGATATGCTGCGTGAAT 57.657 40.909 4.25 0.00 0.00 2.57
167 168 4.342862 ACCTAGATATGCTGCGTGAATT 57.657 40.909 4.25 0.00 0.00 2.17
168 169 4.060900 ACCTAGATATGCTGCGTGAATTG 58.939 43.478 4.25 0.00 0.00 2.32
169 170 3.434641 CCTAGATATGCTGCGTGAATTGG 59.565 47.826 4.25 0.00 0.00 3.16
170 171 3.198409 AGATATGCTGCGTGAATTGGA 57.802 42.857 4.25 0.00 0.00 3.53
171 172 2.874701 AGATATGCTGCGTGAATTGGAC 59.125 45.455 4.25 0.00 0.00 4.02
172 173 2.106477 TATGCTGCGTGAATTGGACA 57.894 45.000 4.25 0.00 0.00 4.02
173 174 1.246649 ATGCTGCGTGAATTGGACAA 58.753 45.000 0.00 0.00 0.00 3.18
174 175 1.028130 TGCTGCGTGAATTGGACAAA 58.972 45.000 0.00 0.00 0.00 2.83
175 176 1.612950 TGCTGCGTGAATTGGACAAAT 59.387 42.857 0.00 0.00 0.00 2.32
176 177 2.816672 TGCTGCGTGAATTGGACAAATA 59.183 40.909 0.00 0.00 0.00 1.40
177 178 3.443329 TGCTGCGTGAATTGGACAAATAT 59.557 39.130 0.00 0.00 0.00 1.28
178 179 4.082300 TGCTGCGTGAATTGGACAAATATT 60.082 37.500 0.00 0.00 0.00 1.28
179 180 4.864247 GCTGCGTGAATTGGACAAATATTT 59.136 37.500 0.00 0.00 0.00 1.40
180 181 5.220265 GCTGCGTGAATTGGACAAATATTTG 60.220 40.000 23.60 23.60 43.62 2.32
197 198 8.914654 CAAATATTTGTAACACTGACCATGTTG 58.085 33.333 18.32 0.00 40.47 3.33
198 199 7.759489 ATATTTGTAACACTGACCATGTTGT 57.241 32.000 0.72 0.00 40.47 3.32
199 200 5.906113 TTTGTAACACTGACCATGTTGTT 57.094 34.783 0.72 0.00 40.47 2.83
200 201 5.493133 TTGTAACACTGACCATGTTGTTC 57.507 39.130 0.72 0.00 40.47 3.18
201 202 3.880490 TGTAACACTGACCATGTTGTTCC 59.120 43.478 0.72 0.00 40.47 3.62
202 203 2.727123 ACACTGACCATGTTGTTCCA 57.273 45.000 0.00 0.00 0.00 3.53
203 204 2.575532 ACACTGACCATGTTGTTCCAG 58.424 47.619 0.00 0.00 0.00 3.86
204 205 1.881973 CACTGACCATGTTGTTCCAGG 59.118 52.381 0.00 0.00 0.00 4.45
205 206 1.494721 ACTGACCATGTTGTTCCAGGT 59.505 47.619 0.00 0.00 34.76 4.00
206 207 2.091885 ACTGACCATGTTGTTCCAGGTT 60.092 45.455 0.00 0.00 31.57 3.50
207 208 2.294233 CTGACCATGTTGTTCCAGGTTG 59.706 50.000 0.00 0.00 31.57 3.77
208 209 2.092158 TGACCATGTTGTTCCAGGTTGA 60.092 45.455 0.00 0.00 31.57 3.18
209 210 2.554032 GACCATGTTGTTCCAGGTTGAG 59.446 50.000 0.00 0.00 31.57 3.02
210 211 2.091885 ACCATGTTGTTCCAGGTTGAGT 60.092 45.455 0.00 0.00 0.00 3.41
211 212 3.137544 ACCATGTTGTTCCAGGTTGAGTA 59.862 43.478 0.00 0.00 0.00 2.59
212 213 4.141287 CCATGTTGTTCCAGGTTGAGTAA 58.859 43.478 0.00 0.00 0.00 2.24
213 214 4.582656 CCATGTTGTTCCAGGTTGAGTAAA 59.417 41.667 0.00 0.00 0.00 2.01
214 215 5.243730 CCATGTTGTTCCAGGTTGAGTAAAT 59.756 40.000 0.00 0.00 0.00 1.40
215 216 6.432783 CCATGTTGTTCCAGGTTGAGTAAATA 59.567 38.462 0.00 0.00 0.00 1.40
216 217 6.870971 TGTTGTTCCAGGTTGAGTAAATAC 57.129 37.500 0.00 0.00 0.00 1.89
217 218 6.597562 TGTTGTTCCAGGTTGAGTAAATACT 58.402 36.000 0.00 0.00 39.71 2.12
218 219 6.485313 TGTTGTTCCAGGTTGAGTAAATACTG 59.515 38.462 0.00 0.00 36.50 2.74
219 220 6.182507 TGTTCCAGGTTGAGTAAATACTGT 57.817 37.500 0.00 0.00 36.50 3.55
220 221 7.305813 TGTTCCAGGTTGAGTAAATACTGTA 57.694 36.000 0.00 0.00 36.50 2.74
221 222 7.156673 TGTTCCAGGTTGAGTAAATACTGTAC 58.843 38.462 0.00 0.00 36.50 2.90
222 223 5.957798 TCCAGGTTGAGTAAATACTGTACG 58.042 41.667 0.00 0.00 36.50 3.67
223 224 5.477984 TCCAGGTTGAGTAAATACTGTACGT 59.522 40.000 0.00 0.00 36.50 3.57
224 225 6.658816 TCCAGGTTGAGTAAATACTGTACGTA 59.341 38.462 0.00 0.00 36.50 3.57
225 226 6.749118 CCAGGTTGAGTAAATACTGTACGTAC 59.251 42.308 18.90 18.90 36.50 3.67
226 227 7.307694 CAGGTTGAGTAAATACTGTACGTACA 58.692 38.462 25.88 25.88 36.50 2.90
227 228 7.809331 CAGGTTGAGTAAATACTGTACGTACAA 59.191 37.037 27.16 15.44 36.50 2.41
228 229 8.359642 AGGTTGAGTAAATACTGTACGTACAAA 58.640 33.333 27.16 18.93 36.50 2.83
229 230 8.427774 GGTTGAGTAAATACTGTACGTACAAAC 58.572 37.037 27.16 21.74 36.50 2.93
230 231 9.185192 GTTGAGTAAATACTGTACGTACAAACT 57.815 33.333 27.16 20.86 36.50 2.66
232 233 9.825972 TGAGTAAATACTGTACGTACAAACTAC 57.174 33.333 27.16 21.02 36.50 2.73
233 234 9.825972 GAGTAAATACTGTACGTACAAACTACA 57.174 33.333 27.16 7.36 36.50 2.74
237 238 8.693542 AATACTGTACGTACAAACTACATTCC 57.306 34.615 27.16 0.00 35.50 3.01
238 239 5.156355 ACTGTACGTACAAACTACATTCCG 58.844 41.667 27.16 14.18 35.50 4.30
239 240 3.919804 TGTACGTACAAACTACATTCCGC 59.080 43.478 25.54 0.00 32.40 5.54
240 241 3.308438 ACGTACAAACTACATTCCGCT 57.692 42.857 0.00 0.00 0.00 5.52
241 242 4.439305 ACGTACAAACTACATTCCGCTA 57.561 40.909 0.00 0.00 0.00 4.26
242 243 4.808558 ACGTACAAACTACATTCCGCTAA 58.191 39.130 0.00 0.00 0.00 3.09
243 244 4.860907 ACGTACAAACTACATTCCGCTAAG 59.139 41.667 0.00 0.00 0.00 2.18
244 245 4.259690 CGTACAAACTACATTCCGCTAAGC 60.260 45.833 0.00 0.00 0.00 3.09
245 246 3.007635 ACAAACTACATTCCGCTAAGCC 58.992 45.455 0.00 0.00 0.00 4.35
246 247 2.327200 AACTACATTCCGCTAAGCCC 57.673 50.000 0.00 0.00 0.00 5.19
247 248 0.468648 ACTACATTCCGCTAAGCCCC 59.531 55.000 0.00 0.00 0.00 5.80
248 249 0.468226 CTACATTCCGCTAAGCCCCA 59.532 55.000 0.00 0.00 0.00 4.96
249 250 0.468226 TACATTCCGCTAAGCCCCAG 59.532 55.000 0.00 0.00 0.00 4.45
250 251 1.271840 ACATTCCGCTAAGCCCCAGA 61.272 55.000 0.00 0.00 0.00 3.86
251 252 0.107214 CATTCCGCTAAGCCCCAGAA 60.107 55.000 0.00 0.00 0.00 3.02
252 253 0.623723 ATTCCGCTAAGCCCCAGAAA 59.376 50.000 0.00 0.00 0.00 2.52
253 254 0.402504 TTCCGCTAAGCCCCAGAAAA 59.597 50.000 0.00 0.00 0.00 2.29
254 255 0.035439 TCCGCTAAGCCCCAGAAAAG 60.035 55.000 0.00 0.00 0.00 2.27
255 256 0.035439 CCGCTAAGCCCCAGAAAAGA 60.035 55.000 0.00 0.00 0.00 2.52
256 257 1.613255 CCGCTAAGCCCCAGAAAAGAA 60.613 52.381 0.00 0.00 0.00 2.52
257 258 2.159382 CGCTAAGCCCCAGAAAAGAAA 58.841 47.619 0.00 0.00 0.00 2.52
258 259 2.556622 CGCTAAGCCCCAGAAAAGAAAA 59.443 45.455 0.00 0.00 0.00 2.29
259 260 3.611766 CGCTAAGCCCCAGAAAAGAAAAC 60.612 47.826 0.00 0.00 0.00 2.43
260 261 3.320826 GCTAAGCCCCAGAAAAGAAAACA 59.679 43.478 0.00 0.00 0.00 2.83
261 262 4.021104 GCTAAGCCCCAGAAAAGAAAACAT 60.021 41.667 0.00 0.00 0.00 2.71
262 263 5.511373 GCTAAGCCCCAGAAAAGAAAACATT 60.511 40.000 0.00 0.00 0.00 2.71
263 264 4.607293 AGCCCCAGAAAAGAAAACATTC 57.393 40.909 0.00 0.00 0.00 2.67
264 265 4.226384 AGCCCCAGAAAAGAAAACATTCT 58.774 39.130 0.00 0.00 33.83 2.40
265 266 4.039609 AGCCCCAGAAAAGAAAACATTCTG 59.960 41.667 7.57 7.57 46.06 3.02
266 267 4.309933 CCCCAGAAAAGAAAACATTCTGC 58.690 43.478 8.79 0.00 45.46 4.26
267 268 4.039609 CCCCAGAAAAGAAAACATTCTGCT 59.960 41.667 8.79 0.00 45.46 4.24
268 269 5.243730 CCCCAGAAAAGAAAACATTCTGCTA 59.756 40.000 8.79 0.00 45.46 3.49
269 270 6.239289 CCCCAGAAAAGAAAACATTCTGCTAA 60.239 38.462 8.79 0.00 45.46 3.09
270 271 7.209475 CCCAGAAAAGAAAACATTCTGCTAAA 58.791 34.615 8.79 0.00 45.46 1.85
271 272 7.710475 CCCAGAAAAGAAAACATTCTGCTAAAA 59.290 33.333 8.79 0.00 45.46 1.52
272 273 9.097257 CCAGAAAAGAAAACATTCTGCTAAAAA 57.903 29.630 8.79 0.00 45.46 1.94
296 297 7.440523 AAAAGAAATCTGCTTATTGAGTCGT 57.559 32.000 0.00 0.00 0.00 4.34
297 298 7.440523 AAAGAAATCTGCTTATTGAGTCGTT 57.559 32.000 0.00 0.00 0.00 3.85
298 299 8.547967 AAAGAAATCTGCTTATTGAGTCGTTA 57.452 30.769 0.00 0.00 0.00 3.18
299 300 8.547967 AAGAAATCTGCTTATTGAGTCGTTAA 57.452 30.769 0.00 0.00 0.00 2.01
300 301 7.965045 AGAAATCTGCTTATTGAGTCGTTAAC 58.035 34.615 0.00 0.00 0.00 2.01
301 302 6.663944 AATCTGCTTATTGAGTCGTTAACC 57.336 37.500 0.00 0.00 0.00 2.85
302 303 5.401531 TCTGCTTATTGAGTCGTTAACCT 57.598 39.130 0.00 0.00 0.00 3.50
303 304 5.790593 TCTGCTTATTGAGTCGTTAACCTT 58.209 37.500 0.00 0.00 0.00 3.50
304 305 6.228258 TCTGCTTATTGAGTCGTTAACCTTT 58.772 36.000 0.00 0.00 0.00 3.11
305 306 6.708949 TCTGCTTATTGAGTCGTTAACCTTTT 59.291 34.615 0.00 0.00 0.00 2.27
306 307 7.227910 TCTGCTTATTGAGTCGTTAACCTTTTT 59.772 33.333 0.00 0.00 0.00 1.94
307 308 7.357303 TGCTTATTGAGTCGTTAACCTTTTTC 58.643 34.615 0.00 0.00 0.00 2.29
308 309 7.227910 TGCTTATTGAGTCGTTAACCTTTTTCT 59.772 33.333 0.00 0.00 0.00 2.52
309 310 8.715088 GCTTATTGAGTCGTTAACCTTTTTCTA 58.285 33.333 0.00 0.00 0.00 2.10
313 314 7.662604 TGAGTCGTTAACCTTTTTCTATTCC 57.337 36.000 0.00 0.00 0.00 3.01
314 315 6.652062 TGAGTCGTTAACCTTTTTCTATTCCC 59.348 38.462 0.00 0.00 0.00 3.97
315 316 5.942236 AGTCGTTAACCTTTTTCTATTCCCC 59.058 40.000 0.00 0.00 0.00 4.81
316 317 4.937015 TCGTTAACCTTTTTCTATTCCCCG 59.063 41.667 0.00 0.00 0.00 5.73
317 318 4.437794 CGTTAACCTTTTTCTATTCCCCGC 60.438 45.833 0.00 0.00 0.00 6.13
318 319 1.746470 ACCTTTTTCTATTCCCCGCG 58.254 50.000 0.00 0.00 0.00 6.46
319 320 1.279846 ACCTTTTTCTATTCCCCGCGA 59.720 47.619 8.23 0.00 0.00 5.87
320 321 1.940613 CCTTTTTCTATTCCCCGCGAG 59.059 52.381 8.23 0.00 0.00 5.03
321 322 2.419574 CCTTTTTCTATTCCCCGCGAGA 60.420 50.000 8.23 0.00 0.00 4.04
322 323 3.267483 CTTTTTCTATTCCCCGCGAGAA 58.733 45.455 8.23 11.21 0.00 2.87
323 324 3.337694 TTTTCTATTCCCCGCGAGAAA 57.662 42.857 8.23 11.16 36.41 2.52
324 325 3.337694 TTTCTATTCCCCGCGAGAAAA 57.662 42.857 8.23 0.00 35.53 2.29
325 326 3.337694 TTCTATTCCCCGCGAGAAAAA 57.662 42.857 8.23 4.37 0.00 1.94
355 356 9.787532 AATCTATTGGTGAAAATTGTATCGTTG 57.212 29.630 0.00 0.00 0.00 4.10
356 357 7.757526 TCTATTGGTGAAAATTGTATCGTTGG 58.242 34.615 0.00 0.00 0.00 3.77
357 358 4.775058 TGGTGAAAATTGTATCGTTGGG 57.225 40.909 0.00 0.00 0.00 4.12
358 359 3.057174 TGGTGAAAATTGTATCGTTGGGC 60.057 43.478 0.00 0.00 0.00 5.36
359 360 3.192633 GGTGAAAATTGTATCGTTGGGCT 59.807 43.478 0.00 0.00 0.00 5.19
360 361 4.412207 GTGAAAATTGTATCGTTGGGCTC 58.588 43.478 0.00 0.00 0.00 4.70
361 362 3.126171 TGAAAATTGTATCGTTGGGCTCG 59.874 43.478 0.00 0.00 0.00 5.03
362 363 2.396590 AATTGTATCGTTGGGCTCGT 57.603 45.000 0.00 0.00 0.00 4.18
363 364 1.935933 ATTGTATCGTTGGGCTCGTC 58.064 50.000 0.00 0.00 0.00 4.20
364 365 0.108520 TTGTATCGTTGGGCTCGTCC 60.109 55.000 0.00 0.00 0.00 4.79
365 366 0.968901 TGTATCGTTGGGCTCGTCCT 60.969 55.000 0.00 0.00 34.39 3.85
366 367 0.175073 GTATCGTTGGGCTCGTCCTT 59.825 55.000 0.00 0.00 34.39 3.36
367 368 0.458669 TATCGTTGGGCTCGTCCTTC 59.541 55.000 0.00 0.00 34.39 3.46
368 369 2.240162 ATCGTTGGGCTCGTCCTTCC 62.240 60.000 0.00 0.00 34.39 3.46
369 370 2.434359 GTTGGGCTCGTCCTTCCG 60.434 66.667 0.00 0.00 34.39 4.30
370 371 4.388499 TTGGGCTCGTCCTTCCGC 62.388 66.667 0.00 0.00 34.39 5.54
398 399 4.443266 GCTGCTCCGTCCTTCGCT 62.443 66.667 0.00 0.00 38.35 4.93
399 400 2.262915 CTGCTCCGTCCTTCGCTT 59.737 61.111 0.00 0.00 38.35 4.68
400 401 1.807573 CTGCTCCGTCCTTCGCTTC 60.808 63.158 0.00 0.00 38.35 3.86
401 402 2.261671 GCTCCGTCCTTCGCTTCA 59.738 61.111 0.00 0.00 38.35 3.02
402 403 2.095252 GCTCCGTCCTTCGCTTCAC 61.095 63.158 0.00 0.00 38.35 3.18
403 404 1.446272 CTCCGTCCTTCGCTTCACC 60.446 63.158 0.00 0.00 38.35 4.02
404 405 1.878656 CTCCGTCCTTCGCTTCACCT 61.879 60.000 0.00 0.00 38.35 4.00
405 406 1.446272 CCGTCCTTCGCTTCACCTC 60.446 63.158 0.00 0.00 38.35 3.85
406 407 1.446272 CGTCCTTCGCTTCACCTCC 60.446 63.158 0.00 0.00 0.00 4.30
407 408 1.446272 GTCCTTCGCTTCACCTCCG 60.446 63.158 0.00 0.00 0.00 4.63
408 409 2.815647 CCTTCGCTTCACCTCCGC 60.816 66.667 0.00 0.00 0.00 5.54
409 410 2.815647 CTTCGCTTCACCTCCGCC 60.816 66.667 0.00 0.00 0.00 6.13
410 411 3.589654 CTTCGCTTCACCTCCGCCA 62.590 63.158 0.00 0.00 0.00 5.69
411 412 3.876589 TTCGCTTCACCTCCGCCAC 62.877 63.158 0.00 0.00 0.00 5.01
425 426 3.492353 CCACCGCCCATCTCCCAT 61.492 66.667 0.00 0.00 0.00 4.00
426 427 2.111878 CACCGCCCATCTCCCATC 59.888 66.667 0.00 0.00 0.00 3.51
427 428 2.040464 ACCGCCCATCTCCCATCT 60.040 61.111 0.00 0.00 0.00 2.90
428 429 2.429058 CCGCCCATCTCCCATCTG 59.571 66.667 0.00 0.00 0.00 2.90
429 430 2.281345 CGCCCATCTCCCATCTGC 60.281 66.667 0.00 0.00 0.00 4.26
430 431 2.815945 CGCCCATCTCCCATCTGCT 61.816 63.158 0.00 0.00 0.00 4.24
431 432 1.535685 GCCCATCTCCCATCTGCTT 59.464 57.895 0.00 0.00 0.00 3.91
432 433 0.536915 GCCCATCTCCCATCTGCTTC 60.537 60.000 0.00 0.00 0.00 3.86
433 434 0.110104 CCCATCTCCCATCTGCTTCC 59.890 60.000 0.00 0.00 0.00 3.46
434 435 0.110104 CCATCTCCCATCTGCTTCCC 59.890 60.000 0.00 0.00 0.00 3.97
435 436 0.110104 CATCTCCCATCTGCTTCCCC 59.890 60.000 0.00 0.00 0.00 4.81
436 437 1.414061 ATCTCCCATCTGCTTCCCCG 61.414 60.000 0.00 0.00 0.00 5.73
437 438 3.764160 CTCCCATCTGCTTCCCCGC 62.764 68.421 0.00 0.00 0.00 6.13
438 439 4.883354 CCCATCTGCTTCCCCGCC 62.883 72.222 0.00 0.00 0.00 6.13
454 455 4.790962 CCGCTGCTGCCTCACCAT 62.791 66.667 10.24 0.00 35.36 3.55
455 456 3.200593 CGCTGCTGCCTCACCATC 61.201 66.667 10.24 0.00 35.36 3.51
456 457 2.827642 GCTGCTGCCTCACCATCC 60.828 66.667 3.85 0.00 0.00 3.51
457 458 2.124403 CTGCTGCCTCACCATCCC 60.124 66.667 0.00 0.00 0.00 3.85
458 459 2.611800 TGCTGCCTCACCATCCCT 60.612 61.111 0.00 0.00 0.00 4.20
459 460 2.207501 CTGCTGCCTCACCATCCCTT 62.208 60.000 0.00 0.00 0.00 3.95
460 461 1.452833 GCTGCCTCACCATCCCTTC 60.453 63.158 0.00 0.00 0.00 3.46
461 462 1.919600 GCTGCCTCACCATCCCTTCT 61.920 60.000 0.00 0.00 0.00 2.85
462 463 0.179936 CTGCCTCACCATCCCTTCTC 59.820 60.000 0.00 0.00 0.00 2.87
463 464 0.252881 TGCCTCACCATCCCTTCTCT 60.253 55.000 0.00 0.00 0.00 3.10
464 465 0.915364 GCCTCACCATCCCTTCTCTT 59.085 55.000 0.00 0.00 0.00 2.85
465 466 1.134250 GCCTCACCATCCCTTCTCTTC 60.134 57.143 0.00 0.00 0.00 2.87
466 467 1.488393 CCTCACCATCCCTTCTCTTCC 59.512 57.143 0.00 0.00 0.00 3.46
467 468 1.488393 CTCACCATCCCTTCTCTTCCC 59.512 57.143 0.00 0.00 0.00 3.97
468 469 0.548510 CACCATCCCTTCTCTTCCCC 59.451 60.000 0.00 0.00 0.00 4.81
469 470 0.423544 ACCATCCCTTCTCTTCCCCT 59.576 55.000 0.00 0.00 0.00 4.79
470 471 1.135960 CCATCCCTTCTCTTCCCCTC 58.864 60.000 0.00 0.00 0.00 4.30
471 472 1.135960 CATCCCTTCTCTTCCCCTCC 58.864 60.000 0.00 0.00 0.00 4.30
472 473 0.029577 ATCCCTTCTCTTCCCCTCCC 60.030 60.000 0.00 0.00 0.00 4.30
473 474 1.162951 TCCCTTCTCTTCCCCTCCCT 61.163 60.000 0.00 0.00 0.00 4.20
474 475 0.642710 CCCTTCTCTTCCCCTCCCTA 59.357 60.000 0.00 0.00 0.00 3.53
475 476 1.224381 CCCTTCTCTTCCCCTCCCTAT 59.776 57.143 0.00 0.00 0.00 2.57
476 477 2.615391 CCTTCTCTTCCCCTCCCTATC 58.385 57.143 0.00 0.00 0.00 2.08
477 478 2.615391 CTTCTCTTCCCCTCCCTATCC 58.385 57.143 0.00 0.00 0.00 2.59
478 479 0.483328 TCTCTTCCCCTCCCTATCCG 59.517 60.000 0.00 0.00 0.00 4.18
479 480 0.543174 CTCTTCCCCTCCCTATCCGG 60.543 65.000 0.00 0.00 0.00 5.14
480 481 1.236282 CTTCCCCTCCCTATCCGGT 59.764 63.158 0.00 0.00 0.00 5.28
481 482 0.832559 CTTCCCCTCCCTATCCGGTC 60.833 65.000 0.00 0.00 0.00 4.79
482 483 1.301913 TTCCCCTCCCTATCCGGTCT 61.302 60.000 0.00 0.00 0.00 3.85
483 484 1.228925 CCCCTCCCTATCCGGTCTC 60.229 68.421 0.00 0.00 0.00 3.36
484 485 1.228925 CCCTCCCTATCCGGTCTCC 60.229 68.421 0.00 0.00 0.00 3.71
486 487 2.203451 TCCCTATCCGGTCTCCGC 60.203 66.667 0.00 0.00 46.86 5.54
487 488 3.303928 CCCTATCCGGTCTCCGCC 61.304 72.222 0.00 0.00 46.86 6.13
488 489 3.671411 CCTATCCGGTCTCCGCCG 61.671 72.222 0.00 0.00 46.86 6.46
507 508 3.793144 CGGCGGCTGCTTTGTCTC 61.793 66.667 18.85 0.00 42.25 3.36
508 509 3.793144 GGCGGCTGCTTTGTCTCG 61.793 66.667 18.85 0.00 42.25 4.04
509 510 4.451652 GCGGCTGCTTTGTCTCGC 62.452 66.667 11.21 0.00 38.39 5.03
510 511 2.740055 CGGCTGCTTTGTCTCGCT 60.740 61.111 0.00 0.00 0.00 4.93
515 516 1.074752 CTGCTTTGTCTCGCTTCTCC 58.925 55.000 0.00 0.00 0.00 3.71
520 521 4.856607 GTCTCGCTTCTCCGCCGG 62.857 72.222 0.00 0.00 0.00 6.13
572 573 3.217743 GGCCGACCTCGACCTAGG 61.218 72.222 7.41 7.41 38.90 3.02
574 575 3.217743 CCGACCTCGACCTAGGCC 61.218 72.222 9.30 0.00 40.62 5.19
576 577 2.279408 GACCTCGACCTAGGCCCT 59.721 66.667 9.30 0.00 40.62 5.19
632 633 2.494073 GAGTTCATCCTCTCTCGGTGTT 59.506 50.000 0.00 0.00 0.00 3.32
668 669 2.027561 TGGCGCTCCAACATTACTACTT 60.028 45.455 7.64 0.00 39.99 2.24
669 670 2.351726 GGCGCTCCAACATTACTACTTG 59.648 50.000 7.64 0.00 0.00 3.16
767 786 7.827236 TGGAATCGAAAGTAATTTGGTGACTAT 59.173 33.333 0.00 0.00 0.00 2.12
779 798 1.547372 GGTGACTATGGTGGTACGTGT 59.453 52.381 0.00 0.00 0.00 4.49
796 815 2.030862 TGCACAGCTCACGCATGA 59.969 55.556 0.00 0.00 39.10 3.07
809 836 1.091771 CGCATGACATCTGTCCACCC 61.092 60.000 7.81 0.00 44.15 4.61
843 870 4.154195 CGATTTGTGTTAGAAGACCAAGGG 59.846 45.833 0.00 0.00 0.00 3.95
854 881 1.303643 ACCAAGGGCAGCTTAGCAC 60.304 57.895 7.07 0.00 38.51 4.40
859 886 2.398803 GGGCAGCTTAGCACTTAGC 58.601 57.895 7.07 0.45 46.19 3.09
905 933 5.057819 CCTCCTGATGTCTGAAATCATCTG 58.942 45.833 10.83 8.36 40.46 2.90
906 934 5.396548 CCTCCTGATGTCTGAAATCATCTGT 60.397 44.000 10.83 0.00 40.46 3.41
907 935 5.425630 TCCTGATGTCTGAAATCATCTGTG 58.574 41.667 10.83 0.00 40.46 3.66
916 944 6.912591 GTCTGAAATCATCTGTGTTTTCGTTT 59.087 34.615 7.20 0.00 42.73 3.60
921 949 7.908193 AATCATCTGTGTTTTCGTTTGTAAC 57.092 32.000 0.00 0.00 0.00 2.50
952 980 6.822170 CCTAACTTCCTTACCGAAAGCTTATT 59.178 38.462 0.00 0.00 33.49 1.40
1111 1144 6.716620 TAGTGCCTACTGTGCAATACCTGC 62.717 50.000 0.00 0.00 43.89 4.85
1130 1163 9.899661 ATACCTGCAACTTATTTCATTACTGTA 57.100 29.630 0.00 0.00 0.00 2.74
1131 1164 8.630054 ACCTGCAACTTATTTCATTACTGTAA 57.370 30.769 2.26 2.26 0.00 2.41
1132 1165 9.243105 ACCTGCAACTTATTTCATTACTGTAAT 57.757 29.630 7.22 7.22 0.00 1.89
1162 1195 6.942005 TGTGATGGTGTTTCTAGAACAATCAT 59.058 34.615 13.75 12.25 32.98 2.45
1171 1204 4.773013 TCTAGAACAATCATCTGCATGCA 58.227 39.130 21.29 21.29 0.00 3.96
1174 1207 5.142061 AGAACAATCATCTGCATGCAAAA 57.858 34.783 22.88 13.33 0.00 2.44
1179 1212 5.047872 ACAATCATCTGCATGCAAAACACTA 60.048 36.000 22.88 4.09 0.00 2.74
1180 1213 5.648178 ATCATCTGCATGCAAAACACTAA 57.352 34.783 22.88 2.47 0.00 2.24
1185 1218 8.252417 TCATCTGCATGCAAAACACTAAATATT 58.748 29.630 22.88 0.00 0.00 1.28
1192 1225 5.855925 TGCAAAACACTAAATATTGACAGCG 59.144 36.000 0.00 0.00 0.00 5.18
1198 1231 5.294306 ACACTAAATATTGACAGCGTCCATG 59.706 40.000 6.30 0.00 0.00 3.66
1228 1261 3.194755 TGCTTGCATTTCTCATGCTGAAT 59.805 39.130 8.22 0.00 44.79 2.57
1271 1304 7.503549 TGAGTTGTATGCATCTCTGTTGATAT 58.496 34.615 18.81 0.00 40.39 1.63
1329 1362 3.073798 AGTGACACCATCCATACACCAAA 59.926 43.478 0.84 0.00 0.00 3.28
1335 1368 5.170021 CACCATCCATACACCAAATTGTTG 58.830 41.667 0.00 0.00 34.25 3.33
1560 1594 5.010516 TGCTTGCTCTCCTCTTCTATATGTC 59.989 44.000 0.00 0.00 0.00 3.06
1568 1602 3.515562 CTCTTCTATATGTCTGCCCCCT 58.484 50.000 0.00 0.00 0.00 4.79
1778 1817 4.115516 ACTGATATAGCTGCACGTTTCTG 58.884 43.478 1.02 0.00 0.00 3.02
1902 1941 1.135141 TGCGCAAAAATGACCCATAGC 60.135 47.619 8.16 0.00 0.00 2.97
2006 2045 3.806949 TGGCAAACCTACCAGATTTCT 57.193 42.857 0.00 0.00 36.63 2.52
2162 2201 5.773680 ACTCTAACAGAACCTACAGCTTACA 59.226 40.000 0.00 0.00 0.00 2.41
2385 2426 6.599244 CACTTGTGGAAGGATATACAACATGT 59.401 38.462 0.00 0.00 32.95 3.21
2387 2428 6.306643 TGTGGAAGGATATACAACATGTCA 57.693 37.500 0.00 0.00 0.00 3.58
2415 2471 6.528321 TGGAAGGAGCAGATTGATTATAGTG 58.472 40.000 0.00 0.00 0.00 2.74
2454 2510 6.356186 TCTAGGAAAAAGGGTCTAACTCAC 57.644 41.667 0.00 0.00 0.00 3.51
2480 2537 6.424812 TGTTATTGCTTGATCGATAGTCCATG 59.575 38.462 0.00 0.00 37.40 3.66
2809 3051 5.180271 ACAATCAGCAAATTAAGCAATGGG 58.820 37.500 5.70 0.00 0.00 4.00
2993 3235 4.678309 GCAGCTACCGTTCTAATTCTGTCT 60.678 45.833 0.00 0.00 0.00 3.41
3294 3536 2.704572 ACTCACACTAAAGAGCATGGC 58.295 47.619 0.00 0.00 35.28 4.40
3586 3828 7.335422 CCTAAATGTCAACAAGCTATTCTCACT 59.665 37.037 0.00 0.00 0.00 3.41
3772 4014 7.097192 ACTACTTTGATATTCGTTCTGAGCAA 58.903 34.615 0.00 0.00 0.00 3.91
4214 4456 3.823873 ACCAAAAAGGCGACATTGTGATA 59.176 39.130 0.00 0.00 43.14 2.15
4259 4501 3.695830 AATCTGCCGAAAAGGTCTGTA 57.304 42.857 0.00 0.00 43.70 2.74
4369 4611 0.882042 GGAGCATACTGGATGGTGCG 60.882 60.000 9.70 0.00 46.35 5.34
4476 4718 8.116026 ACAATTTTACCTTATGAAGAGGGATGT 58.884 33.333 0.00 0.00 38.65 3.06
4579 4821 4.689612 ACATGGATCCTGTAATTAGCGT 57.310 40.909 14.23 0.00 0.00 5.07
5127 5399 1.609208 ACATGTCAACTTGTCCAGGC 58.391 50.000 0.00 0.00 29.59 4.85
5140 5412 4.782019 TGTCCAGGCAACAAATATGAAC 57.218 40.909 0.00 0.00 41.41 3.18
5260 5535 8.861086 GGTTTCCATCTATCAGAGTAAGATGTA 58.139 37.037 14.61 2.21 43.28 2.29
5369 5645 2.265589 TTTGTTCTTCCGGTTCTCCC 57.734 50.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.046846 TCCCTATGATCCGAAATATAGATGTTT 57.953 33.333 0.00 0.00 0.00 2.83
47 48 8.609617 TCCCTATGATCCGAAATATAGATGTT 57.390 34.615 0.00 0.00 0.00 2.71
48 49 7.841729 ACTCCCTATGATCCGAAATATAGATGT 59.158 37.037 0.00 0.00 0.00 3.06
49 50 8.243961 ACTCCCTATGATCCGAAATATAGATG 57.756 38.462 0.00 0.00 0.00 2.90
50 51 9.581289 CTACTCCCTATGATCCGAAATATAGAT 57.419 37.037 0.00 0.00 0.00 1.98
51 52 8.558312 ACTACTCCCTATGATCCGAAATATAGA 58.442 37.037 0.00 0.00 0.00 1.98
52 53 8.754991 ACTACTCCCTATGATCCGAAATATAG 57.245 38.462 0.00 0.00 0.00 1.31
53 54 8.558312 AGACTACTCCCTATGATCCGAAATATA 58.442 37.037 0.00 0.00 0.00 0.86
54 55 7.415086 AGACTACTCCCTATGATCCGAAATAT 58.585 38.462 0.00 0.00 0.00 1.28
55 56 6.791371 AGACTACTCCCTATGATCCGAAATA 58.209 40.000 0.00 0.00 0.00 1.40
56 57 5.646215 AGACTACTCCCTATGATCCGAAAT 58.354 41.667 0.00 0.00 0.00 2.17
57 58 5.063017 AGACTACTCCCTATGATCCGAAA 57.937 43.478 0.00 0.00 0.00 3.46
58 59 4.726035 AGACTACTCCCTATGATCCGAA 57.274 45.455 0.00 0.00 0.00 4.30
59 60 7.693533 ATATAGACTACTCCCTATGATCCGA 57.306 40.000 0.00 0.00 0.00 4.55
60 61 9.275398 GTAATATAGACTACTCCCTATGATCCG 57.725 40.741 0.00 0.00 0.00 4.18
65 66 9.100554 CGTGAGTAATATAGACTACTCCCTATG 57.899 40.741 3.73 0.00 42.21 2.23
66 67 8.824783 ACGTGAGTAATATAGACTACTCCCTAT 58.175 37.037 3.73 0.00 46.88 2.57
67 68 8.200024 ACGTGAGTAATATAGACTACTCCCTA 57.800 38.462 3.73 0.00 46.88 3.53
68 69 7.077050 ACGTGAGTAATATAGACTACTCCCT 57.923 40.000 3.73 0.00 46.88 4.20
86 87 3.175152 GTTCTGCTACATCTGACGTGAG 58.825 50.000 0.00 0.00 0.00 3.51
87 88 2.094700 GGTTCTGCTACATCTGACGTGA 60.095 50.000 0.00 0.00 0.00 4.35
88 89 2.263077 GGTTCTGCTACATCTGACGTG 58.737 52.381 0.00 0.00 0.00 4.49
89 90 1.135373 CGGTTCTGCTACATCTGACGT 60.135 52.381 0.00 0.00 0.00 4.34
90 91 1.135373 ACGGTTCTGCTACATCTGACG 60.135 52.381 0.00 0.00 0.00 4.35
91 92 2.263077 CACGGTTCTGCTACATCTGAC 58.737 52.381 0.00 0.00 0.00 3.51
92 93 1.404181 GCACGGTTCTGCTACATCTGA 60.404 52.381 0.00 0.00 34.06 3.27
93 94 1.002366 GCACGGTTCTGCTACATCTG 58.998 55.000 0.00 0.00 34.06 2.90
94 95 0.108138 GGCACGGTTCTGCTACATCT 60.108 55.000 0.00 0.00 37.33 2.90
95 96 0.391130 TGGCACGGTTCTGCTACATC 60.391 55.000 0.00 0.00 37.33 3.06
96 97 0.391661 CTGGCACGGTTCTGCTACAT 60.392 55.000 0.00 0.00 37.33 2.29
97 98 1.005037 CTGGCACGGTTCTGCTACA 60.005 57.895 0.00 0.00 37.33 2.74
98 99 3.876300 CTGGCACGGTTCTGCTAC 58.124 61.111 0.00 0.00 37.33 3.58
107 108 0.452987 CCATGAAATCACTGGCACGG 59.547 55.000 0.00 0.00 42.99 4.94
112 113 4.271049 CGTAGTTAGCCATGAAATCACTGG 59.729 45.833 0.00 7.23 0.00 4.00
113 114 4.271049 CCGTAGTTAGCCATGAAATCACTG 59.729 45.833 0.00 0.00 0.00 3.66
114 115 4.442706 CCGTAGTTAGCCATGAAATCACT 58.557 43.478 0.00 0.00 0.00 3.41
115 116 3.002348 GCCGTAGTTAGCCATGAAATCAC 59.998 47.826 0.00 0.00 0.00 3.06
116 117 3.202906 GCCGTAGTTAGCCATGAAATCA 58.797 45.455 0.00 0.00 0.00 2.57
117 118 3.879932 GCCGTAGTTAGCCATGAAATC 57.120 47.619 0.00 0.00 0.00 2.17
125 126 1.308998 TAGTACGGCCGTAGTTAGCC 58.691 55.000 41.67 27.26 46.17 3.93
126 127 3.108881 GTTTAGTACGGCCGTAGTTAGC 58.891 50.000 41.67 32.35 35.96 3.09
127 128 3.378427 AGGTTTAGTACGGCCGTAGTTAG 59.622 47.826 41.67 10.53 35.96 2.34
128 129 3.352648 AGGTTTAGTACGGCCGTAGTTA 58.647 45.455 41.67 33.02 35.96 2.24
129 130 2.171003 AGGTTTAGTACGGCCGTAGTT 58.829 47.619 41.67 31.28 35.96 2.24
130 131 1.839424 AGGTTTAGTACGGCCGTAGT 58.161 50.000 39.33 39.33 37.87 2.73
131 132 3.206150 TCTAGGTTTAGTACGGCCGTAG 58.794 50.000 37.18 23.70 0.00 3.51
132 133 3.275617 TCTAGGTTTAGTACGGCCGTA 57.724 47.619 33.45 33.45 0.00 4.02
133 134 2.128771 TCTAGGTTTAGTACGGCCGT 57.871 50.000 36.01 36.01 0.00 5.68
134 135 4.730657 CATATCTAGGTTTAGTACGGCCG 58.269 47.826 26.86 26.86 0.00 6.13
135 136 4.220163 AGCATATCTAGGTTTAGTACGGCC 59.780 45.833 0.00 0.00 0.00 6.13
136 137 5.162075 CAGCATATCTAGGTTTAGTACGGC 58.838 45.833 0.00 0.00 0.00 5.68
137 138 5.162075 GCAGCATATCTAGGTTTAGTACGG 58.838 45.833 0.00 0.00 0.00 4.02
138 139 4.852104 CGCAGCATATCTAGGTTTAGTACG 59.148 45.833 0.00 0.00 0.00 3.67
139 140 5.629849 CACGCAGCATATCTAGGTTTAGTAC 59.370 44.000 0.00 0.00 0.00 2.73
140 141 5.533528 TCACGCAGCATATCTAGGTTTAGTA 59.466 40.000 0.00 0.00 0.00 1.82
141 142 4.341235 TCACGCAGCATATCTAGGTTTAGT 59.659 41.667 0.00 0.00 0.00 2.24
142 143 4.871513 TCACGCAGCATATCTAGGTTTAG 58.128 43.478 0.00 0.00 0.00 1.85
143 144 4.929819 TCACGCAGCATATCTAGGTTTA 57.070 40.909 0.00 0.00 0.00 2.01
144 145 3.819564 TCACGCAGCATATCTAGGTTT 57.180 42.857 0.00 0.00 0.00 3.27
145 146 3.819564 TTCACGCAGCATATCTAGGTT 57.180 42.857 0.00 0.00 0.00 3.50
146 147 4.060900 CAATTCACGCAGCATATCTAGGT 58.939 43.478 0.00 0.00 0.00 3.08
147 148 3.434641 CCAATTCACGCAGCATATCTAGG 59.565 47.826 0.00 0.00 0.00 3.02
148 149 4.151335 GTCCAATTCACGCAGCATATCTAG 59.849 45.833 0.00 0.00 0.00 2.43
149 150 4.058124 GTCCAATTCACGCAGCATATCTA 58.942 43.478 0.00 0.00 0.00 1.98
150 151 2.874701 GTCCAATTCACGCAGCATATCT 59.125 45.455 0.00 0.00 0.00 1.98
151 152 2.613595 TGTCCAATTCACGCAGCATATC 59.386 45.455 0.00 0.00 0.00 1.63
152 153 2.642427 TGTCCAATTCACGCAGCATAT 58.358 42.857 0.00 0.00 0.00 1.78
153 154 2.106477 TGTCCAATTCACGCAGCATA 57.894 45.000 0.00 0.00 0.00 3.14
154 155 1.246649 TTGTCCAATTCACGCAGCAT 58.753 45.000 0.00 0.00 0.00 3.79
155 156 1.028130 TTTGTCCAATTCACGCAGCA 58.972 45.000 0.00 0.00 0.00 4.41
156 157 2.352503 ATTTGTCCAATTCACGCAGC 57.647 45.000 0.00 0.00 0.00 5.25
157 158 6.321873 CAAATATTTGTCCAATTCACGCAG 57.678 37.500 18.32 0.00 33.59 5.18
171 172 8.914654 CAACATGGTCAGTGTTACAAATATTTG 58.085 33.333 23.60 23.60 39.52 2.32
172 173 8.637986 ACAACATGGTCAGTGTTACAAATATTT 58.362 29.630 0.00 0.00 37.69 1.40
173 174 8.177119 ACAACATGGTCAGTGTTACAAATATT 57.823 30.769 0.00 0.00 37.69 1.28
174 175 7.759489 ACAACATGGTCAGTGTTACAAATAT 57.241 32.000 0.00 0.00 37.69 1.28
175 176 7.255312 GGAACAACATGGTCAGTGTTACAAATA 60.255 37.037 0.00 0.00 35.30 1.40
176 177 6.460953 GGAACAACATGGTCAGTGTTACAAAT 60.461 38.462 0.00 0.00 35.30 2.32
177 178 5.163602 GGAACAACATGGTCAGTGTTACAAA 60.164 40.000 0.00 0.00 35.30 2.83
178 179 4.336993 GGAACAACATGGTCAGTGTTACAA 59.663 41.667 0.00 0.00 35.30 2.41
179 180 3.880490 GGAACAACATGGTCAGTGTTACA 59.120 43.478 0.00 0.00 35.30 2.41
180 181 3.880490 TGGAACAACATGGTCAGTGTTAC 59.120 43.478 0.00 1.09 35.30 2.50
181 182 4.133820 CTGGAACAACATGGTCAGTGTTA 58.866 43.478 0.00 0.00 35.30 2.41
182 183 2.951642 CTGGAACAACATGGTCAGTGTT 59.048 45.455 0.00 0.00 35.30 3.32
183 184 2.575532 CTGGAACAACATGGTCAGTGT 58.424 47.619 0.00 0.00 35.30 3.55
184 185 1.881973 CCTGGAACAACATGGTCAGTG 59.118 52.381 0.00 0.00 35.30 3.66
185 186 1.494721 ACCTGGAACAACATGGTCAGT 59.505 47.619 0.00 0.00 35.30 3.41
186 187 2.276732 ACCTGGAACAACATGGTCAG 57.723 50.000 0.00 0.00 35.30 3.51
187 188 2.092158 TCAACCTGGAACAACATGGTCA 60.092 45.455 0.00 0.00 35.30 4.02
188 189 2.554032 CTCAACCTGGAACAACATGGTC 59.446 50.000 0.00 0.00 38.70 4.02
189 190 2.091885 ACTCAACCTGGAACAACATGGT 60.092 45.455 0.00 0.00 38.70 3.55
190 191 2.586425 ACTCAACCTGGAACAACATGG 58.414 47.619 0.00 0.00 38.70 3.66
191 192 5.766150 TTTACTCAACCTGGAACAACATG 57.234 39.130 0.00 0.00 38.70 3.21
192 193 7.174946 CAGTATTTACTCAACCTGGAACAACAT 59.825 37.037 0.00 0.00 33.05 2.71
193 194 6.485313 CAGTATTTACTCAACCTGGAACAACA 59.515 38.462 0.00 0.00 33.05 3.33
194 195 6.485648 ACAGTATTTACTCAACCTGGAACAAC 59.514 38.462 0.00 0.00 33.05 3.32
195 196 6.597562 ACAGTATTTACTCAACCTGGAACAA 58.402 36.000 0.00 0.00 33.05 2.83
196 197 6.182507 ACAGTATTTACTCAACCTGGAACA 57.817 37.500 0.00 0.00 33.46 3.18
197 198 6.309737 CGTACAGTATTTACTCAACCTGGAAC 59.690 42.308 0.00 0.00 33.46 3.62
198 199 6.015180 ACGTACAGTATTTACTCAACCTGGAA 60.015 38.462 0.00 0.00 33.46 3.53
199 200 5.477984 ACGTACAGTATTTACTCAACCTGGA 59.522 40.000 0.00 0.00 33.46 3.86
200 201 5.717119 ACGTACAGTATTTACTCAACCTGG 58.283 41.667 0.00 0.00 33.46 4.45
201 202 7.307694 TGTACGTACAGTATTTACTCAACCTG 58.692 38.462 24.10 0.00 37.69 4.00
202 203 7.452880 TGTACGTACAGTATTTACTCAACCT 57.547 36.000 24.10 0.00 37.69 3.50
203 204 8.427774 GTTTGTACGTACAGTATTTACTCAACC 58.572 37.037 26.04 7.19 37.69 3.77
204 205 9.185192 AGTTTGTACGTACAGTATTTACTCAAC 57.815 33.333 26.04 21.46 37.69 3.18
206 207 9.825972 GTAGTTTGTACGTACAGTATTTACTCA 57.174 33.333 26.04 6.89 37.69 3.41
207 208 9.825972 TGTAGTTTGTACGTACAGTATTTACTC 57.174 33.333 26.04 15.94 37.69 2.59
211 212 9.143631 GGAATGTAGTTTGTACGTACAGTATTT 57.856 33.333 26.04 15.04 37.69 1.40
212 213 7.485913 CGGAATGTAGTTTGTACGTACAGTATT 59.514 37.037 26.04 19.27 37.69 1.89
213 214 6.968904 CGGAATGTAGTTTGTACGTACAGTAT 59.031 38.462 26.04 18.01 37.69 2.12
214 215 6.314018 CGGAATGTAGTTTGTACGTACAGTA 58.686 40.000 26.04 16.57 37.52 2.74
215 216 5.156355 CGGAATGTAGTTTGTACGTACAGT 58.844 41.667 26.04 17.65 37.52 3.55
216 217 4.030977 GCGGAATGTAGTTTGTACGTACAG 59.969 45.833 26.04 12.52 37.52 2.74
217 218 3.919804 GCGGAATGTAGTTTGTACGTACA 59.080 43.478 24.10 24.10 0.00 2.90
218 219 4.168760 AGCGGAATGTAGTTTGTACGTAC 58.831 43.478 18.90 18.90 0.00 3.67
219 220 4.439305 AGCGGAATGTAGTTTGTACGTA 57.561 40.909 0.00 0.00 0.00 3.57
220 221 3.308438 AGCGGAATGTAGTTTGTACGT 57.692 42.857 0.00 0.00 0.00 3.57
221 222 4.259690 GCTTAGCGGAATGTAGTTTGTACG 60.260 45.833 0.00 0.00 0.00 3.67
222 223 4.033702 GGCTTAGCGGAATGTAGTTTGTAC 59.966 45.833 0.00 0.00 0.00 2.90
223 224 4.186159 GGCTTAGCGGAATGTAGTTTGTA 58.814 43.478 0.00 0.00 0.00 2.41
224 225 3.007635 GGCTTAGCGGAATGTAGTTTGT 58.992 45.455 0.00 0.00 0.00 2.83
225 226 2.354821 GGGCTTAGCGGAATGTAGTTTG 59.645 50.000 0.00 0.00 0.00 2.93
226 227 2.640184 GGGCTTAGCGGAATGTAGTTT 58.360 47.619 0.00 0.00 0.00 2.66
227 228 1.134189 GGGGCTTAGCGGAATGTAGTT 60.134 52.381 0.00 0.00 0.00 2.24
228 229 0.468648 GGGGCTTAGCGGAATGTAGT 59.531 55.000 0.00 0.00 0.00 2.73
229 230 0.468226 TGGGGCTTAGCGGAATGTAG 59.532 55.000 0.00 0.00 0.00 2.74
230 231 0.468226 CTGGGGCTTAGCGGAATGTA 59.532 55.000 0.00 0.00 0.00 2.29
231 232 1.224592 CTGGGGCTTAGCGGAATGT 59.775 57.895 0.00 0.00 0.00 2.71
232 233 0.107214 TTCTGGGGCTTAGCGGAATG 60.107 55.000 0.00 0.00 0.00 2.67
233 234 0.623723 TTTCTGGGGCTTAGCGGAAT 59.376 50.000 0.00 0.00 0.00 3.01
234 235 0.402504 TTTTCTGGGGCTTAGCGGAA 59.597 50.000 0.00 0.00 0.00 4.30
235 236 0.035439 CTTTTCTGGGGCTTAGCGGA 60.035 55.000 0.00 0.00 0.00 5.54
236 237 0.035439 TCTTTTCTGGGGCTTAGCGG 60.035 55.000 0.00 0.00 0.00 5.52
237 238 1.821216 TTCTTTTCTGGGGCTTAGCG 58.179 50.000 0.00 0.00 0.00 4.26
238 239 3.320826 TGTTTTCTTTTCTGGGGCTTAGC 59.679 43.478 0.00 0.00 0.00 3.09
239 240 5.728637 ATGTTTTCTTTTCTGGGGCTTAG 57.271 39.130 0.00 0.00 0.00 2.18
240 241 5.838521 AGAATGTTTTCTTTTCTGGGGCTTA 59.161 36.000 0.00 0.00 39.18 3.09
241 242 4.655649 AGAATGTTTTCTTTTCTGGGGCTT 59.344 37.500 0.00 0.00 39.18 4.35
242 243 4.039609 CAGAATGTTTTCTTTTCTGGGGCT 59.960 41.667 4.40 0.00 40.28 5.19
243 244 4.309933 CAGAATGTTTTCTTTTCTGGGGC 58.690 43.478 4.40 0.00 40.28 5.80
244 245 4.039609 AGCAGAATGTTTTCTTTTCTGGGG 59.960 41.667 12.33 0.00 40.28 4.96
245 246 5.205759 AGCAGAATGTTTTCTTTTCTGGG 57.794 39.130 12.33 0.00 40.28 4.45
246 247 8.647143 TTTTAGCAGAATGTTTTCTTTTCTGG 57.353 30.769 12.33 0.00 40.28 3.86
271 272 7.875971 ACGACTCAATAAGCAGATTTCTTTTT 58.124 30.769 0.00 0.00 0.00 1.94
272 273 7.440523 ACGACTCAATAAGCAGATTTCTTTT 57.559 32.000 0.00 0.00 0.00 2.27
273 274 7.440523 AACGACTCAATAAGCAGATTTCTTT 57.559 32.000 0.00 0.00 0.00 2.52
274 275 8.443937 GTTAACGACTCAATAAGCAGATTTCTT 58.556 33.333 0.00 0.00 0.00 2.52
275 276 7.064728 GGTTAACGACTCAATAAGCAGATTTCT 59.935 37.037 0.00 0.00 0.00 2.52
276 277 7.064728 AGGTTAACGACTCAATAAGCAGATTTC 59.935 37.037 0.00 0.00 31.29 2.17
277 278 6.879458 AGGTTAACGACTCAATAAGCAGATTT 59.121 34.615 0.00 0.00 31.29 2.17
278 279 6.407202 AGGTTAACGACTCAATAAGCAGATT 58.593 36.000 0.00 0.00 31.29 2.40
279 280 5.978814 AGGTTAACGACTCAATAAGCAGAT 58.021 37.500 0.00 0.00 31.29 2.90
280 281 5.401531 AGGTTAACGACTCAATAAGCAGA 57.598 39.130 0.00 0.00 31.29 4.26
281 282 6.481954 AAAGGTTAACGACTCAATAAGCAG 57.518 37.500 0.00 0.00 31.29 4.24
282 283 6.870971 AAAAGGTTAACGACTCAATAAGCA 57.129 33.333 0.00 0.00 31.29 3.91
283 284 7.582352 AGAAAAAGGTTAACGACTCAATAAGC 58.418 34.615 0.00 0.00 0.00 3.09
287 288 8.727910 GGAATAGAAAAAGGTTAACGACTCAAT 58.272 33.333 0.00 0.00 0.00 2.57
288 289 7.173735 GGGAATAGAAAAAGGTTAACGACTCAA 59.826 37.037 0.00 0.00 0.00 3.02
289 290 6.652062 GGGAATAGAAAAAGGTTAACGACTCA 59.348 38.462 0.00 0.00 0.00 3.41
290 291 6.093219 GGGGAATAGAAAAAGGTTAACGACTC 59.907 42.308 0.00 0.00 0.00 3.36
291 292 5.942236 GGGGAATAGAAAAAGGTTAACGACT 59.058 40.000 0.00 0.00 0.00 4.18
292 293 5.163824 CGGGGAATAGAAAAAGGTTAACGAC 60.164 44.000 0.00 0.00 0.00 4.34
293 294 4.937015 CGGGGAATAGAAAAAGGTTAACGA 59.063 41.667 0.00 0.00 0.00 3.85
294 295 4.437794 GCGGGGAATAGAAAAAGGTTAACG 60.438 45.833 0.00 0.00 0.00 3.18
295 296 4.437794 CGCGGGGAATAGAAAAAGGTTAAC 60.438 45.833 0.00 0.00 0.00 2.01
296 297 3.690628 CGCGGGGAATAGAAAAAGGTTAA 59.309 43.478 0.00 0.00 0.00 2.01
297 298 3.055240 TCGCGGGGAATAGAAAAAGGTTA 60.055 43.478 6.13 0.00 0.00 2.85
298 299 2.089201 CGCGGGGAATAGAAAAAGGTT 58.911 47.619 0.00 0.00 0.00 3.50
299 300 1.279846 TCGCGGGGAATAGAAAAAGGT 59.720 47.619 6.13 0.00 0.00 3.50
300 301 1.940613 CTCGCGGGGAATAGAAAAAGG 59.059 52.381 6.13 0.00 0.00 3.11
301 302 2.901249 TCTCGCGGGGAATAGAAAAAG 58.099 47.619 5.94 0.00 0.00 2.27
302 303 3.337694 TTCTCGCGGGGAATAGAAAAA 57.662 42.857 5.94 0.00 0.00 1.94
303 304 3.337694 TTTCTCGCGGGGAATAGAAAA 57.662 42.857 5.94 0.00 35.58 2.29
304 305 3.337694 TTTTCTCGCGGGGAATAGAAA 57.662 42.857 5.94 10.30 36.45 2.52
305 306 3.337694 TTTTTCTCGCGGGGAATAGAA 57.662 42.857 5.94 3.50 0.00 2.10
329 330 9.787532 CAACGATACAATTTTCACCAATAGATT 57.212 29.630 0.00 0.00 0.00 2.40
330 331 8.405531 CCAACGATACAATTTTCACCAATAGAT 58.594 33.333 0.00 0.00 0.00 1.98
331 332 7.148154 CCCAACGATACAATTTTCACCAATAGA 60.148 37.037 0.00 0.00 0.00 1.98
332 333 6.972328 CCCAACGATACAATTTTCACCAATAG 59.028 38.462 0.00 0.00 0.00 1.73
333 334 6.626181 GCCCAACGATACAATTTTCACCAATA 60.626 38.462 0.00 0.00 0.00 1.90
334 335 5.719173 CCCAACGATACAATTTTCACCAAT 58.281 37.500 0.00 0.00 0.00 3.16
335 336 4.559704 GCCCAACGATACAATTTTCACCAA 60.560 41.667 0.00 0.00 0.00 3.67
336 337 3.057174 GCCCAACGATACAATTTTCACCA 60.057 43.478 0.00 0.00 0.00 4.17
337 338 3.192633 AGCCCAACGATACAATTTTCACC 59.807 43.478 0.00 0.00 0.00 4.02
338 339 4.412207 GAGCCCAACGATACAATTTTCAC 58.588 43.478 0.00 0.00 0.00 3.18
339 340 3.126171 CGAGCCCAACGATACAATTTTCA 59.874 43.478 0.00 0.00 0.00 2.69
340 341 3.126343 ACGAGCCCAACGATACAATTTTC 59.874 43.478 0.00 0.00 34.70 2.29
341 342 3.078837 ACGAGCCCAACGATACAATTTT 58.921 40.909 0.00 0.00 34.70 1.82
342 343 2.676342 GACGAGCCCAACGATACAATTT 59.324 45.455 0.00 0.00 34.70 1.82
343 344 2.277084 GACGAGCCCAACGATACAATT 58.723 47.619 0.00 0.00 34.70 2.32
344 345 1.472728 GGACGAGCCCAACGATACAAT 60.473 52.381 0.00 0.00 34.70 2.71
345 346 0.108520 GGACGAGCCCAACGATACAA 60.109 55.000 0.00 0.00 34.70 2.41
346 347 0.968901 AGGACGAGCCCAACGATACA 60.969 55.000 0.00 0.00 37.37 2.29
347 348 0.175073 AAGGACGAGCCCAACGATAC 59.825 55.000 0.00 0.00 37.37 2.24
348 349 0.458669 GAAGGACGAGCCCAACGATA 59.541 55.000 0.00 0.00 37.37 2.92
349 350 1.218316 GAAGGACGAGCCCAACGAT 59.782 57.895 0.00 0.00 37.37 3.73
350 351 2.654877 GAAGGACGAGCCCAACGA 59.345 61.111 0.00 0.00 37.37 3.85
351 352 2.434359 GGAAGGACGAGCCCAACG 60.434 66.667 0.00 0.00 37.37 4.10
352 353 2.434359 CGGAAGGACGAGCCCAAC 60.434 66.667 0.00 0.00 37.37 3.77
353 354 4.388499 GCGGAAGGACGAGCCCAA 62.388 66.667 0.00 0.00 37.37 4.12
381 382 3.941657 AAGCGAAGGACGGAGCAGC 62.942 63.158 0.00 0.00 42.83 5.25
382 383 1.807573 GAAGCGAAGGACGGAGCAG 60.808 63.158 0.00 0.00 42.83 4.24
383 384 2.261671 GAAGCGAAGGACGGAGCA 59.738 61.111 0.00 0.00 42.83 4.26
384 385 2.095252 GTGAAGCGAAGGACGGAGC 61.095 63.158 0.00 0.00 42.83 4.70
385 386 1.446272 GGTGAAGCGAAGGACGGAG 60.446 63.158 0.00 0.00 42.83 4.63
386 387 1.874345 GAGGTGAAGCGAAGGACGGA 61.874 60.000 0.00 0.00 42.83 4.69
387 388 1.446272 GAGGTGAAGCGAAGGACGG 60.446 63.158 0.00 0.00 42.83 4.79
388 389 1.446272 GGAGGTGAAGCGAAGGACG 60.446 63.158 0.00 0.00 45.66 4.79
389 390 1.446272 CGGAGGTGAAGCGAAGGAC 60.446 63.158 0.00 0.00 0.00 3.85
390 391 2.970639 CGGAGGTGAAGCGAAGGA 59.029 61.111 0.00 0.00 0.00 3.36
391 392 2.815647 GCGGAGGTGAAGCGAAGG 60.816 66.667 0.00 0.00 0.00 3.46
392 393 2.815647 GGCGGAGGTGAAGCGAAG 60.816 66.667 0.00 0.00 0.00 3.79
393 394 3.621805 TGGCGGAGGTGAAGCGAA 61.622 61.111 0.00 0.00 0.00 4.70
394 395 4.373116 GTGGCGGAGGTGAAGCGA 62.373 66.667 0.00 0.00 0.00 4.93
408 409 3.482232 GATGGGAGATGGGCGGTGG 62.482 68.421 0.00 0.00 0.00 4.61
409 410 2.111878 GATGGGAGATGGGCGGTG 59.888 66.667 0.00 0.00 0.00 4.94
410 411 2.040464 AGATGGGAGATGGGCGGT 60.040 61.111 0.00 0.00 0.00 5.68
411 412 2.429058 CAGATGGGAGATGGGCGG 59.571 66.667 0.00 0.00 0.00 6.13
412 413 2.281345 GCAGATGGGAGATGGGCG 60.281 66.667 0.00 0.00 0.00 6.13
413 414 0.536915 GAAGCAGATGGGAGATGGGC 60.537 60.000 0.00 0.00 0.00 5.36
414 415 0.110104 GGAAGCAGATGGGAGATGGG 59.890 60.000 0.00 0.00 0.00 4.00
415 416 0.110104 GGGAAGCAGATGGGAGATGG 59.890 60.000 0.00 0.00 0.00 3.51
416 417 0.110104 GGGGAAGCAGATGGGAGATG 59.890 60.000 0.00 0.00 0.00 2.90
417 418 1.414061 CGGGGAAGCAGATGGGAGAT 61.414 60.000 0.00 0.00 0.00 2.75
418 419 2.066393 CGGGGAAGCAGATGGGAGA 61.066 63.158 0.00 0.00 0.00 3.71
419 420 2.507944 CGGGGAAGCAGATGGGAG 59.492 66.667 0.00 0.00 0.00 4.30
420 421 3.797353 GCGGGGAAGCAGATGGGA 61.797 66.667 0.00 0.00 37.05 4.37
421 422 4.883354 GGCGGGGAAGCAGATGGG 62.883 72.222 0.00 0.00 39.27 4.00
437 438 4.790962 ATGGTGAGGCAGCAGCGG 62.791 66.667 5.53 0.00 45.01 5.52
438 439 3.200593 GATGGTGAGGCAGCAGCG 61.201 66.667 5.53 0.00 45.01 5.18
439 440 2.827642 GGATGGTGAGGCAGCAGC 60.828 66.667 6.34 6.34 45.01 5.25
440 441 2.124403 GGGATGGTGAGGCAGCAG 60.124 66.667 5.53 0.00 45.01 4.24
441 442 2.202236 GAAGGGATGGTGAGGCAGCA 62.202 60.000 1.55 1.55 45.85 4.41
442 443 1.452833 GAAGGGATGGTGAGGCAGC 60.453 63.158 0.00 0.00 0.00 5.25
443 444 0.179936 GAGAAGGGATGGTGAGGCAG 59.820 60.000 0.00 0.00 0.00 4.85
444 445 0.252881 AGAGAAGGGATGGTGAGGCA 60.253 55.000 0.00 0.00 0.00 4.75
445 446 0.915364 AAGAGAAGGGATGGTGAGGC 59.085 55.000 0.00 0.00 0.00 4.70
446 447 1.488393 GGAAGAGAAGGGATGGTGAGG 59.512 57.143 0.00 0.00 0.00 3.86
447 448 1.488393 GGGAAGAGAAGGGATGGTGAG 59.512 57.143 0.00 0.00 0.00 3.51
448 449 1.584724 GGGAAGAGAAGGGATGGTGA 58.415 55.000 0.00 0.00 0.00 4.02
449 450 0.548510 GGGGAAGAGAAGGGATGGTG 59.451 60.000 0.00 0.00 0.00 4.17
450 451 0.423544 AGGGGAAGAGAAGGGATGGT 59.576 55.000 0.00 0.00 0.00 3.55
451 452 1.135960 GAGGGGAAGAGAAGGGATGG 58.864 60.000 0.00 0.00 0.00 3.51
452 453 1.135960 GGAGGGGAAGAGAAGGGATG 58.864 60.000 0.00 0.00 0.00 3.51
453 454 0.029577 GGGAGGGGAAGAGAAGGGAT 60.030 60.000 0.00 0.00 0.00 3.85
454 455 1.162951 AGGGAGGGGAAGAGAAGGGA 61.163 60.000 0.00 0.00 0.00 4.20
455 456 0.642710 TAGGGAGGGGAAGAGAAGGG 59.357 60.000 0.00 0.00 0.00 3.95
456 457 2.615391 GATAGGGAGGGGAAGAGAAGG 58.385 57.143 0.00 0.00 0.00 3.46
457 458 2.615391 GGATAGGGAGGGGAAGAGAAG 58.385 57.143 0.00 0.00 0.00 2.85
458 459 1.133136 CGGATAGGGAGGGGAAGAGAA 60.133 57.143 0.00 0.00 0.00 2.87
459 460 0.483328 CGGATAGGGAGGGGAAGAGA 59.517 60.000 0.00 0.00 0.00 3.10
460 461 0.543174 CCGGATAGGGAGGGGAAGAG 60.543 65.000 0.00 0.00 35.97 2.85
461 462 1.301913 ACCGGATAGGGAGGGGAAGA 61.302 60.000 9.46 0.00 46.96 2.87
462 463 0.832559 GACCGGATAGGGAGGGGAAG 60.833 65.000 9.46 0.00 46.96 3.46
463 464 1.235112 GACCGGATAGGGAGGGGAA 59.765 63.158 9.46 0.00 46.96 3.97
464 465 1.703966 AGACCGGATAGGGAGGGGA 60.704 63.158 9.46 0.00 46.96 4.81
465 466 1.228925 GAGACCGGATAGGGAGGGG 60.229 68.421 9.46 0.00 46.96 4.79
466 467 1.228925 GGAGACCGGATAGGGAGGG 60.229 68.421 9.46 0.00 46.96 4.30
467 468 1.604023 CGGAGACCGGATAGGGAGG 60.604 68.421 9.46 0.00 46.96 4.30
468 469 4.082657 CGGAGACCGGATAGGGAG 57.917 66.667 9.46 0.00 46.96 4.30
490 491 3.793144 GAGACAAAGCAGCCGCCG 61.793 66.667 0.00 0.00 39.83 6.46
491 492 3.793144 CGAGACAAAGCAGCCGCC 61.793 66.667 0.00 0.00 39.83 6.13
492 493 4.451652 GCGAGACAAAGCAGCCGC 62.452 66.667 0.00 0.00 38.99 6.53
493 494 2.233007 GAAGCGAGACAAAGCAGCCG 62.233 60.000 0.00 0.00 35.48 5.52
494 495 0.952984 AGAAGCGAGACAAAGCAGCC 60.953 55.000 0.00 0.00 35.48 4.85
495 496 0.441921 GAGAAGCGAGACAAAGCAGC 59.558 55.000 0.00 0.00 35.48 5.25
496 497 1.074752 GGAGAAGCGAGACAAAGCAG 58.925 55.000 0.00 0.00 35.48 4.24
497 498 0.667487 CGGAGAAGCGAGACAAAGCA 60.667 55.000 0.00 0.00 35.48 3.91
498 499 1.960994 GCGGAGAAGCGAGACAAAGC 61.961 60.000 0.00 0.00 0.00 3.51
499 500 1.355066 GGCGGAGAAGCGAGACAAAG 61.355 60.000 0.00 0.00 38.18 2.77
500 501 1.374252 GGCGGAGAAGCGAGACAAA 60.374 57.895 0.00 0.00 38.18 2.83
501 502 2.261671 GGCGGAGAAGCGAGACAA 59.738 61.111 0.00 0.00 38.18 3.18
502 503 4.116328 CGGCGGAGAAGCGAGACA 62.116 66.667 0.00 0.00 38.18 3.41
503 504 4.856607 CCGGCGGAGAAGCGAGAC 62.857 72.222 24.41 0.00 38.18 3.36
529 530 2.185608 GGGGAAGCGAGACAGAGC 59.814 66.667 0.00 0.00 0.00 4.09
632 633 0.036765 CGCCAAACCTGCACCTAGTA 60.037 55.000 0.00 0.00 0.00 1.82
662 663 7.225538 CAGAGTTCATCAACAAGAACAAGTAGT 59.774 37.037 7.88 0.00 44.94 2.73
668 669 7.933577 AGATTACAGAGTTCATCAACAAGAACA 59.066 33.333 7.88 0.00 44.94 3.18
669 670 8.316640 AGATTACAGAGTTCATCAACAAGAAC 57.683 34.615 0.00 0.00 43.33 3.01
725 744 9.554395 TTTCGATTCCAGCAATTGTATATAGAA 57.446 29.630 7.40 0.00 0.00 2.10
767 786 1.227409 CTGTGCACACGTACCACCA 60.227 57.895 17.42 0.00 0.00 4.17
796 815 2.203938 ACCCGGGTGGACAGATGT 60.204 61.111 29.69 0.00 37.49 3.06
809 836 1.871039 ACACAAATCGACTTTGACCCG 59.129 47.619 20.06 11.38 45.96 5.28
843 870 1.012841 CCTGCTAAGTGCTAAGCTGC 58.987 55.000 0.00 0.00 43.37 5.25
854 881 1.520342 GAGACTGCGGCCTGCTAAG 60.520 63.158 18.14 11.66 46.63 2.18
855 882 1.949847 GAGAGACTGCGGCCTGCTAA 61.950 60.000 18.14 1.23 46.63 3.09
856 883 2.363018 AGAGACTGCGGCCTGCTA 60.363 61.111 18.14 6.40 46.63 3.49
857 884 3.768922 GAGAGACTGCGGCCTGCT 61.769 66.667 18.14 1.71 46.63 4.24
858 885 2.866085 AATGAGAGACTGCGGCCTGC 62.866 60.000 11.92 11.92 46.70 4.85
859 886 0.392193 AAATGAGAGACTGCGGCCTG 60.392 55.000 0.00 0.00 0.00 4.85
860 887 0.326264 AAAATGAGAGACTGCGGCCT 59.674 50.000 0.00 0.00 0.00 5.19
905 933 6.031471 AGGATGTTGTTACAAACGAAAACAC 58.969 36.000 0.00 0.00 37.91 3.32
906 934 6.197364 AGGATGTTGTTACAAACGAAAACA 57.803 33.333 0.00 0.00 37.91 2.83
907 935 7.911727 AGTTAGGATGTTGTTACAAACGAAAAC 59.088 33.333 0.00 1.51 37.91 2.43
916 944 7.163441 GGTAAGGAAGTTAGGATGTTGTTACA 58.837 38.462 0.00 0.00 38.95 2.41
921 949 5.080969 TCGGTAAGGAAGTTAGGATGTTG 57.919 43.478 0.00 0.00 0.00 3.33
952 980 4.895297 GGCCTGGAAAATAAGAATCATGGA 59.105 41.667 0.00 0.00 0.00 3.41
1131 1164 9.295825 TGTTCTAGAAACACCATCACATTTTAT 57.704 29.630 6.78 0.00 0.00 1.40
1132 1165 8.684386 TGTTCTAGAAACACCATCACATTTTA 57.316 30.769 6.78 0.00 0.00 1.52
1133 1166 7.581213 TGTTCTAGAAACACCATCACATTTT 57.419 32.000 6.78 0.00 0.00 1.82
1162 1195 7.541783 GTCAATATTTAGTGTTTTGCATGCAGA 59.458 33.333 21.50 14.47 0.00 4.26
1171 1204 6.205853 TGGACGCTGTCAATATTTAGTGTTTT 59.794 34.615 10.14 0.00 34.36 2.43
1174 1207 4.827692 TGGACGCTGTCAATATTTAGTGT 58.172 39.130 10.14 9.05 36.67 3.55
1179 1212 3.620488 ACCATGGACGCTGTCAATATTT 58.380 40.909 21.47 0.00 33.68 1.40
1180 1213 3.281727 ACCATGGACGCTGTCAATATT 57.718 42.857 21.47 0.00 33.68 1.28
1185 1218 2.779755 AATAACCATGGACGCTGTCA 57.220 45.000 21.47 0.00 33.68 3.58
1192 1225 4.916983 TGCAAGCATAATAACCATGGAC 57.083 40.909 21.47 0.00 0.00 4.02
1198 1231 6.145048 GCATGAGAAATGCAAGCATAATAACC 59.855 38.462 8.12 0.00 44.00 2.85
1228 1261 4.338012 ACTCAACTTGGATGCATCATCAA 58.662 39.130 27.25 20.39 42.13 2.57
1404 1438 4.821805 ACCACACAGAACAATAGTTTCAGG 59.178 41.667 0.00 0.00 38.30 3.86
1568 1602 0.323725 AGGTACGGTTAAGAGGCGGA 60.324 55.000 0.00 0.00 0.00 5.54
1902 1941 1.064166 AGATGAGAAACATGGGCCAGG 60.064 52.381 18.06 18.06 39.56 4.45
2162 2201 7.363530 GGGGAGTAAAAACTGAAACTGAAAACT 60.364 37.037 0.00 0.00 0.00 2.66
2385 2426 3.009363 TCAATCTGCTCCTTCCAATGTGA 59.991 43.478 0.00 0.00 0.00 3.58
2387 2428 3.726557 TCAATCTGCTCCTTCCAATGT 57.273 42.857 0.00 0.00 0.00 2.71
2454 2510 5.985530 TGGACTATCGATCAAGCAATAACAG 59.014 40.000 0.00 0.00 0.00 3.16
2809 3051 0.321671 TAGCCACTGACTCAAGTGCC 59.678 55.000 0.00 0.00 45.17 5.01
2993 3235 4.080807 TGGTGAAACAGGTGTTCTAAGACA 60.081 41.667 0.00 0.00 39.98 3.41
3294 3536 6.370166 GGGAAAGAACTCTGACTGTGAAATAG 59.630 42.308 0.00 0.00 0.00 1.73
3586 3828 4.656112 ACTTCCACTTCCTTTCTCTCTTCA 59.344 41.667 0.00 0.00 0.00 3.02
3772 4014 2.191375 CAGCCCTCATCCATGCGT 59.809 61.111 0.00 0.00 0.00 5.24
3774 4016 2.194212 CAGCAGCCCTCATCCATGC 61.194 63.158 0.00 0.00 37.15 4.06
4214 4456 4.323104 GGTAAGAGACTCTGGACAGCATTT 60.323 45.833 5.55 0.00 0.00 2.32
4259 4501 7.725844 GGGTGAGGGAGATAATGAAAAATGTAT 59.274 37.037 0.00 0.00 0.00 2.29
4369 4611 0.615331 TTGACCATCCTCACTGCTCC 59.385 55.000 0.00 0.00 0.00 4.70
4476 4718 2.286872 CCCAGCAAAACAAAACATGCA 58.713 42.857 0.00 0.00 41.18 3.96
5127 5399 6.750501 CAGCATCCTCAAGTTCATATTTGTTG 59.249 38.462 0.00 0.00 0.00 3.33
5140 5412 1.467734 GAGCAACACAGCATCCTCAAG 59.532 52.381 0.00 0.00 36.85 3.02
5260 5535 9.520515 AACTACAATATGAGGTCAAGTTGAAAT 57.479 29.630 7.25 0.00 32.34 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.