AutoCloner

Multiple sequence alignment - TraesCS6B01G343600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G343600	chr6B	100.000	3312	0	0	1	3312	604700103	604696792	0.000000e+00	6117.0
1	TraesCS6B01G343600	chr6B	98.678	832	11	0	1	832	204560173	204561004	0.000000e+00	1476.0
2	TraesCS6B01G343600	chr6B	98.676	831	11	0	1	831	481037331	481036501	0.000000e+00	1474.0
3	TraesCS6B01G343600	chr6B	75.203	246	47	11	2753	2993	459255948	459256184	1.630000e-18	104.0
4	TraesCS6B01G343600	chr6B	87.719	57	6	1	2757	2812	171804097	171804041	7.670000e-07	65.8
5	TraesCS6B01G343600	chr6D	91.673	2498	162	25	840	3312	403651745	403649269	0.000000e+00	3419.0
6	TraesCS6B01G343600	chr6D	80.460	87	10	6	2784	2864	376336905	376336820	3.570000e-05	60.2
7	TraesCS6B01G343600	chr6A	93.673	1707	83	10	930	2621	549643422	549645118	0.000000e+00	2531.0
8	TraesCS6B01G343600	chr6A	83.779	524	77	7	2780	3297	549720855	549721376	1.070000e-134	490.0
9	TraesCS6B01G343600	chr6A	77.711	166	31	4	2440	2605	49744999	49744840	2.720000e-16	97.1
10	TraesCS6B01G343600	chr2D	90.087	1372	114	10	940	2311	296536313	296537662	0.000000e+00	1760.0
11	TraesCS6B01G343600	chr2B	98.686	837	10	1	1	837	218061873	218062708	0.000000e+00	1483.0
12	TraesCS6B01G343600	chr2B	80.606	165	17	7	2441	2605	5435765	5435616	2.700000e-21	113.0
13	TraesCS6B01G343600	chr3B	98.798	832	10	0	1	832	770733383	770734214	0.000000e+00	1482.0
14	TraesCS6B01G343600	chr3A	98.681	834	9	2	1	832	744975265	744976098	0.000000e+00	1478.0
15	TraesCS6B01G343600	chr4A	98.447	837	11	1	1	837	670846799	670847633	0.000000e+00	1472.0
16	TraesCS6B01G343600	chr7B	98.558	832	12	0	1	832	649989375	649990206	0.000000e+00	1471.0
17	TraesCS6B01G343600	chr1A	98.559	833	11	1	1	832	343662866	343662034	0.000000e+00	1471.0
18	TraesCS6B01G343600	chr5A	98.100	842	13	2	1	841	391971485	391972324	0.000000e+00	1463.0
19	TraesCS6B01G343600	chr1B	73.381	556	112	30	2753	3291	268556760	268556224	1.220000e-39	174.0
20	TraesCS6B01G343600	chr7D	75.949	316	64	10	2763	3072	536452690	536452381	5.720000e-33	152.0
21	TraesCS6B01G343600	chr7D	72.846	534	110	33	2779	3296	321500430	321499916	2.060000e-32	150.0
22	TraesCS6B01G343600	chr7D	81.437	167	27	3	2440	2605	486059890	486059727	2.070000e-27	134.0
23	TraesCS6B01G343600	chr7D	81.356	118	12	4	2441	2557	570828282	570828390	1.640000e-13	87.9
24	TraesCS6B01G343600	chrUn	82.424	165	24	2	2441	2605	260671564	260671405	4.460000e-29	139.0
25	TraesCS6B01G343600	chr5B	79.630	162	23	5	2441	2602	616907569	616907720	1.260000e-19	108.0
26	TraesCS6B01G343600	chr5B	78.261	161	25	7	2441	2601	399177814	399177664	9.780000e-16	95.3
27	TraesCS6B01G343600	chr7A	79.710	138	20	3	2441	2577	660089439	660089569	3.520000e-15	93.5
28	TraesCS6B01G343600	chr4B	92.593	54	4	0	2441	2494	404603751	404603698	9.850000e-11	78.7
29	TraesCS6B01G343600	chr4B	97.059	34	1	0	2781	2814	629859057	629859090	1.280000e-04	58.4
30	TraesCS6B01G343600	chr5D	82.432	74	7	5	2741	2813	421423203	421423271	3.570000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G343600	chr6B	604696792	604700103	3311	True	6117	6117	100.000	1	3312	1	chr6B.!!$R3	3311
1	TraesCS6B01G343600	chr6B	204560173	204561004	831	False	1476	1476	98.678	1	832	1	chr6B.!!$F1	831
2	TraesCS6B01G343600	chr6B	481036501	481037331	830	True	1474	1474	98.676	1	831	1	chr6B.!!$R2	830
3	TraesCS6B01G343600	chr6D	403649269	403651745	2476	True	3419	3419	91.673	840	3312	1	chr6D.!!$R2	2472
4	TraesCS6B01G343600	chr6A	549643422	549645118	1696	False	2531	2531	93.673	930	2621	1	chr6A.!!$F1	1691
5	TraesCS6B01G343600	chr6A	549720855	549721376	521	False	490	490	83.779	2780	3297	1	chr6A.!!$F2	517
6	TraesCS6B01G343600	chr2D	296536313	296537662	1349	False	1760	1760	90.087	940	2311	1	chr2D.!!$F1	1371
7	TraesCS6B01G343600	chr2B	218061873	218062708	835	False	1483	1483	98.686	1	837	1	chr2B.!!$F1	836
8	TraesCS6B01G343600	chr3B	770733383	770734214	831	False	1482	1482	98.798	1	832	1	chr3B.!!$F1	831
9	TraesCS6B01G343600	chr3A	744975265	744976098	833	False	1478	1478	98.681	1	832	1	chr3A.!!$F1	831
10	TraesCS6B01G343600	chr4A	670846799	670847633	834	False	1472	1472	98.447	1	837	1	chr4A.!!$F1	836
11	TraesCS6B01G343600	chr7B	649989375	649990206	831	False	1471	1471	98.558	1	832	1	chr7B.!!$F1	831
12	TraesCS6B01G343600	chr1A	343662034	343662866	832	True	1471	1471	98.559	1	832	1	chr1A.!!$R1	831
13	TraesCS6B01G343600	chr5A	391971485	391972324	839	False	1463	1463	98.100	1	841	1	chr5A.!!$F1	840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
904	914	2.227194	CCCTTGGAGCACTTAAAACGT	58.773	47.619	0.0	0.0	0.0	3.99	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2607	2632	0.596577	TTGCTCTGTTCGCTACTCGT	59.403	50.0	0.0	0.0	39.67	4.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
640	643	6.102468	TGTGAAATAGATGGATTATGGTCCCA	59.898	38.462	0.00	0.00	37.48	4.37
812	816	4.822628	TGTGGCCCCGTTGCAACA	62.823	61.111	28.01	5.72	42.82	3.33
838	842	4.379813	CGGGCGTTCTTCTAGTAGTGTTTA	60.380	45.833	0.00	0.00	0.00	2.01
879	883	9.334947	AGTAAGTAACTTTTTCTTTGAGGTACC	57.665	33.333	2.73	2.73	34.82	3.34
904	914	2.227194	CCCTTGGAGCACTTAAAACGT	58.773	47.619	0.00	0.00	0.00	3.99
908	918	4.935808	CCTTGGAGCACTTAAAACGTAGAT	59.064	41.667	0.00	0.00	0.00	1.98
945	955	5.585047	GGACGCTCAAACTTGGAGTAATTAT	59.415	40.000	0.00	0.00	34.83	1.28
1061	1071	2.614520	TCGACTACATAGCTCTCTGCAC	59.385	50.000	0.00	0.00	45.94	4.57
1098	1108	5.529014	AATCGCAAATATTTTGCACAACC	57.471	34.783	20.97	0.00	45.14	3.77
1156	1167	4.758251	CCATGCCGGTCGCTGTGA	62.758	66.667	1.90	0.00	38.78	3.58
1428	1439	2.185608	GGCTTCTGTCTCGGCTCC	59.814	66.667	0.00	0.00	0.00	4.70
1573	1584	1.139853	CCGGCTTCTTAGAATGGCTCT	59.860	52.381	12.90	0.00	38.28	4.09
1576	1587	2.636830	GCTTCTTAGAATGGCTCTGCA	58.363	47.619	0.00	0.00	35.41	4.41
1581	1592	4.005650	TCTTAGAATGGCTCTGCAAACAG	58.994	43.478	0.00	0.00	45.95	3.16
1596	1607	2.430921	CAGTCCGTGAGCACCGAC	60.431	66.667	12.21	12.21	39.00	4.79
1752	1763	3.511540	TCGACTCTGTCATGATCAAAGGT	59.488	43.478	0.00	0.00	32.09	3.50
1846	1857	1.070786	GTGCCGTTCCTCAACCTGA	59.929	57.895	0.00	0.00	0.00	3.86
2055	2066	2.434774	GGGAAGCCGGTGAAGGTT	59.565	61.111	1.90	0.00	0.00	3.50
2235	2246	2.685897	GAGGTGCTTGTTTTGGTGTACA	59.314	45.455	0.00	0.00	0.00	2.90
2268	2279	3.220999	TTGAGGCGACACGACCAGG	62.221	63.158	0.00	0.00	34.11	4.45
2281	2292	3.056821	CACGACCAGGAAGTACATCAAGA	60.057	47.826	0.00	0.00	0.00	3.02
2299	2310	1.218230	GATTCGGCTCGTCTGCATCC	61.218	60.000	0.00	0.00	34.04	3.51
2329	2340	8.609176	TCGATTAAACTAAATGATACCAGTTGC	58.391	33.333	0.00	0.00	32.39	4.17
2333	2344	7.675962	AAACTAAATGATACCAGTTGCGTTA	57.324	32.000	0.00	0.00	32.39	3.18
2335	2346	7.068692	ACTAAATGATACCAGTTGCGTTAAC	57.931	36.000	0.00	0.00	39.65	2.01
2418	2429	7.800380	AGATTGATATCGCGTGAATCAAAATTC	59.200	33.333	25.74	21.17	41.52	2.17
2419	2430	5.431309	TGATATCGCGTGAATCAAAATTCG	58.569	37.500	5.77	0.00	43.61	3.34
2514	2539	0.178967	ATGGTTGCATGTGGTGGTGA	60.179	50.000	0.00	0.00	0.00	4.02
2549	2574	5.001232	ACGTATGATTGCAAGTTAAGGTGT	58.999	37.500	4.94	0.00	0.00	4.16
2550	2575	5.106712	ACGTATGATTGCAAGTTAAGGTGTG	60.107	40.000	4.94	0.00	0.00	3.82
2592	2617	8.827832	ATTGTATGGTAATATGGCATGCTTAT	57.172	30.769	18.92	14.59	0.00	1.73
2614	2639	9.335891	CTTATATGTTGAGATAAGCACGAGTAG	57.664	37.037	0.00	0.00	29.04	2.57
2621	2646	2.257974	TAAGCACGAGTAGCGAACAG	57.742	50.000	0.00	0.00	44.57	3.16
2631	2656	1.727335	GTAGCGAACAGAGCAACCTTC	59.273	52.381	0.00	0.00	37.01	3.46
2639	2665	4.351054	AGCAACCTTCGGGGGCAG	62.351	66.667	0.00	0.00	40.47	4.85
2645	2671	3.003173	CTTCGGGGGCAGGAGACA	61.003	66.667	0.00	0.00	0.00	3.41
2668	2694	4.539083	TTGTGCCGCACTCCACGT	62.539	61.111	23.52	0.00	35.11	4.49
2673	2699	4.308458	CCGCACTCCACGTCCCAA	62.308	66.667	0.00	0.00	0.00	4.12
2698	2724	3.414700	GCGCGTGTTGGACCAGAG	61.415	66.667	8.43	0.00	0.00	3.35
2700	2726	2.022129	CGCGTGTTGGACCAGAGAC	61.022	63.158	0.00	0.00	0.00	3.36
2707	2733	0.764369	TTGGACCAGAGACCACTGCT	60.764	55.000	0.00	0.00	37.56	4.24
2738	2764	0.837940	TAGGAGGCTCGCTCTGTAGA	59.162	55.000	8.69	0.00	0.00	2.59
2739	2765	0.750182	AGGAGGCTCGCTCTGTAGAC	60.750	60.000	8.69	0.00	0.00	2.59
2742	2768	1.755008	GGCTCGCTCTGTAGACCCT	60.755	63.158	0.00	0.00	0.00	4.34
2743	2769	1.730451	GGCTCGCTCTGTAGACCCTC	61.730	65.000	0.00	0.00	0.00	4.30
2744	2770	2.018544	CTCGCTCTGTAGACCCTCG	58.981	63.158	0.00	0.00	0.00	4.63
2745	2771	2.054140	CTCGCTCTGTAGACCCTCGC	62.054	65.000	0.00	0.00	0.00	5.03
2746	2772	2.115911	CGCTCTGTAGACCCTCGCT	61.116	63.158	0.00	0.00	0.00	4.93
2747	2773	1.731093	GCTCTGTAGACCCTCGCTC	59.269	63.158	0.00	0.00	0.00	5.03
2748	2774	0.750182	GCTCTGTAGACCCTCGCTCT	60.750	60.000	0.00	0.00	0.00	4.09
2749	2775	1.021202	CTCTGTAGACCCTCGCTCTG	58.979	60.000	0.00	0.00	0.00	3.35
2750	2776	0.328592	TCTGTAGACCCTCGCTCTGT	59.671	55.000	0.00	0.00	0.00	3.41
2751	2777	1.558294	TCTGTAGACCCTCGCTCTGTA	59.442	52.381	0.00	0.00	0.00	2.74
2752	2778	1.944024	CTGTAGACCCTCGCTCTGTAG	59.056	57.143	0.00	0.00	0.00	2.74
2753	2779	0.664224	GTAGACCCTCGCTCTGTAGC	59.336	60.000	0.00	0.00	45.86	3.58
2873	2900	1.601419	CCCTTCTCCTTCGCGTGGTA	61.601	60.000	17.35	7.42	0.00	3.25
2877	2904	1.825090	TCTCCTTCGCGTGGTACTAA	58.175	50.000	17.35	0.00	0.00	2.24
2892	2919	0.690762	ACTAACGGTGAAGCATGGGT	59.309	50.000	0.00	0.00	0.00	4.51
2895	2922	0.893727	AACGGTGAAGCATGGGTTCC	60.894	55.000	5.79	0.00	39.02	3.62
2898	2925	0.251341	GGTGAAGCATGGGTTCCAGT	60.251	55.000	5.79	0.00	39.02	4.00
2910	2937	0.946221	GTTCCAGTCCGCAGTCAGTG	60.946	60.000	0.00	0.00	0.00	3.66
2919	2946	2.075489	GCAGTCAGTGTCGTCGTCG	61.075	63.158	0.00	0.00	38.55	5.12
2925	2952	2.246739	AGTGTCGTCGTCGTTCCGA	61.247	57.895	1.33	0.00	38.33	4.55
3049	3079	3.591254	GAGGCGCCCTTCGTTCAGT	62.591	63.158	26.15	0.00	41.07	3.41
3050	3080	2.668550	GGCGCCCTTCGTTCAGTT	60.669	61.111	18.11	0.00	41.07	3.16
3065	3095	0.035630	CAGTTGAGGCCTTCCAGGAG	60.036	60.000	6.77	0.00	37.67	3.69
3112	3142	1.005630	GCAAGTCCTGACTCGCAGT	60.006	57.895	5.38	0.00	40.86	4.40
3160	3191	0.533755	GTTCTGCCGGAGATGGATGG	60.534	60.000	5.05	0.00	0.00	3.51
3169	3200	1.684248	GGAGATGGATGGCAAGTGCTT	60.684	52.381	2.85	0.00	41.70	3.91
3170	3201	2.097825	GAGATGGATGGCAAGTGCTTT	58.902	47.619	2.85	0.00	41.70	3.51
3172	3203	3.285484	AGATGGATGGCAAGTGCTTTAG	58.715	45.455	2.85	0.00	41.70	1.85
3228	3259	2.223479	ACAAACGACATTGTGTGCTTCC	60.223	45.455	0.00	0.00	41.78	3.46
3232	3263	0.238289	GACATTGTGTGCTTCCGGTG	59.762	55.000	0.00	0.00	0.00	4.94
3233	3264	1.081242	CATTGTGTGCTTCCGGTGC	60.081	57.895	13.68	13.68	0.00	5.01
3288	3319	2.498941	CCGCTAAGCCCCTCATCGA	61.499	63.158	0.00	0.00	0.00	3.59
3289	3320	1.006805	CGCTAAGCCCCTCATCGAG	60.007	63.158	0.00	0.00	0.00	4.04
3307	3338	1.598130	GGGATGACATGTAGCGGCC	60.598	63.158	0.00	0.00	0.00	6.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
216	217	5.871524	TGAACAATTGCAACAAAGCACTAAA	59.128	32.000	0.00	0.00	45.61	1.85
640	643	7.884877	CACACACATATCCATCTTATTGGGTAT	59.115	37.037	0.00	0.00	42.63	2.73
812	816	1.471684	CTACTAGAAGAACGCCCGTGT	59.528	52.381	0.00	0.00	0.00	4.49
855	859	9.683870	TTGGTACCTCAAAGAAAAAGTTACTTA	57.316	29.630	14.36	0.00	0.00	2.24
879	883	5.619086	CGTTTTAAGTGCTCCAAGGGTATTG	60.619	44.000	0.00	0.00	0.00	1.90
904	914	4.579340	AGCGTCCTTTCTACGAATCATCTA	59.421	41.667	0.00	0.00	42.90	1.98
908	918	2.490509	TGAGCGTCCTTTCTACGAATCA	59.509	45.455	0.00	0.48	42.90	2.57
1061	1071	9.941664	ATATTTGCGATTAGAAATGACAGAAAG	57.058	29.630	0.00	0.00	0.00	2.62
1428	1439	1.515521	GGAAGTTTCCCCACGTGCAG	61.516	60.000	10.91	3.06	41.62	4.41
1573	1584	1.153269	TGCTCACGGACTGTTTGCA	60.153	52.632	6.92	6.92	34.92	4.08
1576	1587	1.594293	CGGTGCTCACGGACTGTTT	60.594	57.895	1.90	0.00	33.61	2.83
1742	1753	4.574674	AGCAGGATGTAACCTTTGATCA	57.425	40.909	0.00	0.00	38.32	2.92
1752	1763	3.118408	AGAACGGCATTAGCAGGATGTAA	60.118	43.478	0.00	0.00	44.61	2.41
1829	1840	1.070786	GTCAGGTTGAGGAACGGCA	59.929	57.895	0.00	0.00	32.28	5.69
1846	1857	2.264794	GAATCGGTCCAGCACGGT	59.735	61.111	0.00	0.00	35.57	4.83
2204	2215	3.832237	AAGCACCTCGGCACCTGTG	62.832	63.158	0.00	0.00	35.83	3.66
2213	2224	0.738389	ACACCAAAACAAGCACCTCG	59.262	50.000	0.00	0.00	0.00	4.63
2235	2246	2.803492	GCCTCAACTGTCGACTGTCTTT	60.803	50.000	25.62	10.10	0.00	2.52
2268	2279	3.487574	CGAGCCGAATCTTGATGTACTTC	59.512	47.826	1.85	1.85	0.00	3.01
2281	2292	1.227380	GGATGCAGACGAGCCGAAT	60.227	57.895	0.00	0.00	0.00	3.34
2327	2338	1.336148	ACCGATTCTCACGTTAACGCA	60.336	47.619	27.07	13.44	44.43	5.24
2329	2340	3.913763	TGTAACCGATTCTCACGTTAACG	59.086	43.478	25.68	25.68	46.33	3.18
2333	2344	8.882415	AATATATTGTAACCGATTCTCACGTT	57.118	30.769	0.00	0.00	0.00	3.99
2335	2346	8.974408	TGAAATATATTGTAACCGATTCTCACG	58.026	33.333	0.00	0.00	0.00	4.35
2387	2398	7.732664	TGATTCACGCGATATCAATCTAAATG	58.267	34.615	15.93	0.00	0.00	2.32
2397	2408	5.666203	TCGAATTTTGATTCACGCGATATC	58.334	37.500	15.93	12.72	0.00	1.63
2527	2552	5.323900	CACACCTTAACTTGCAATCATACG	58.676	41.667	0.00	0.00	0.00	3.06
2549	2574	9.234827	CCATACAATTATGAATGAGATAAGGCA	57.765	33.333	0.00	0.00	37.86	4.75
2550	2575	9.236006	ACCATACAATTATGAATGAGATAAGGC	57.764	33.333	0.00	0.00	37.86	4.35
2592	2617	5.520632	GCTACTCGTGCTTATCTCAACATA	58.479	41.667	0.00	0.00	0.00	2.29
2607	2632	0.596577	TTGCTCTGTTCGCTACTCGT	59.403	50.000	0.00	0.00	39.67	4.18
2613	2638	0.946221	CGAAGGTTGCTCTGTTCGCT	60.946	55.000	0.00	0.00	35.81	4.93
2614	2639	1.493311	CGAAGGTTGCTCTGTTCGC	59.507	57.895	0.00	0.00	35.81	4.70
2631	2656	4.181010	CCATGTCTCCTGCCCCCG	62.181	72.222	0.00	0.00	0.00	5.73
2639	2665	1.021390	CGGCACAAGACCATGTCTCC	61.021	60.000	0.00	0.00	42.59	3.71
2645	2671	1.672356	GAGTGCGGCACAAGACCAT	60.672	57.895	32.29	12.03	36.74	3.55
2683	2709	1.668151	GGTCTCTGGTCCAACACGC	60.668	63.158	0.00	0.00	0.00	5.34
2696	2722	2.284190	GCTATGGAAAGCAGTGGTCTC	58.716	52.381	0.00	0.00	42.30	3.36
2698	2724	1.340017	TGGCTATGGAAAGCAGTGGTC	60.340	52.381	0.00	0.00	44.64	4.02
2700	2726	2.062971	ATGGCTATGGAAAGCAGTGG	57.937	50.000	0.00	0.00	44.64	4.00
2868	2895	2.443887	TGCTTCACCGTTAGTACCAC	57.556	50.000	0.00	0.00	0.00	4.16
2873	2900	0.690762	ACCCATGCTTCACCGTTAGT	59.309	50.000	0.00	0.00	0.00	2.24
2877	2904	1.303317	GGAACCCATGCTTCACCGT	60.303	57.895	4.33	0.00	0.00	4.83
2892	2919	1.367471	CACTGACTGCGGACTGGAA	59.633	57.895	0.00	0.00	0.00	3.53
2895	2922	1.730902	CGACACTGACTGCGGACTG	60.731	63.158	0.00	0.00	0.00	3.51
2898	2925	2.643272	GACGACACTGACTGCGGA	59.357	61.111	0.00	0.00	0.00	5.54
2919	2946	1.000955	TGCTCTGAACTCCTTCGGAAC	59.999	52.381	0.00	0.00	40.62	3.62
2925	2952	0.605589	CCGTCTGCTCTGAACTCCTT	59.394	55.000	0.00	0.00	0.00	3.36
2966	2993	4.504916	CGACGCCCCAGCTCTCTG	62.505	72.222	0.00	0.00	40.02	3.35
3043	3073	1.528129	CTGGAAGGCCTCAACTGAAC	58.472	55.000	5.23	0.00	34.31	3.18
3065	3095	3.894947	GTCGCCTCCGGAGCTCTC	61.895	72.222	26.87	12.80	34.56	3.20
3095	3125	0.730834	CGACTGCGAGTCAGGACTTG	60.731	60.000	11.56	11.56	45.30	3.16
3101	3131	4.803426	GCCCCGACTGCGAGTCAG	62.803	72.222	14.09	5.27	45.30	3.51
3144	3175	2.281345	GCCATCCATCTCCGGCAG	60.281	66.667	0.00	0.00	44.25	4.85
3160	3191	0.523519	GAGGCACCTAAAGCACTTGC	59.476	55.000	0.00	0.00	42.49	4.01
3233	3264	3.636231	TTGTGGCCCTCCAGACCG	61.636	66.667	0.00	0.00	44.48	4.79
3239	3270	0.895559	CTTTGGAGTTGTGGCCCTCC	60.896	60.000	16.63	16.63	46.20	4.30
3245	3276	0.754957	TGCACCCTTTGGAGTTGTGG	60.755	55.000	0.00	0.00	34.81	4.17
3283	3314	2.681706	GCTACATGTCATCCCTCGATG	58.318	52.381	0.00	0.00	46.30	3.84
3284	3315	1.270826	CGCTACATGTCATCCCTCGAT	59.729	52.381	0.00	0.00	0.00	3.59
3288	3319	1.447643	GCCGCTACATGTCATCCCT	59.552	57.895	0.00	0.00	0.00	4.20
3289	3320	1.598130	GGCCGCTACATGTCATCCC	60.598	63.158	0.00	0.00	0.00	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.