Multiple sequence alignment - TraesCS6B01G343400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G343400 chr6B 100.000 3224 0 0 1 3224 604460900 604464123 0.000000e+00 5954.0
1 TraesCS6B01G343400 chr6B 89.060 585 44 12 1 567 166253595 166253013 0.000000e+00 708.0
2 TraesCS6B01G343400 chr6B 88.225 569 55 4 1 567 646438861 646439419 0.000000e+00 669.0
3 TraesCS6B01G343400 chr6B 95.980 199 8 0 2408 2606 664459028 664459226 1.120000e-84 324.0
4 TraesCS6B01G343400 chr6B 98.837 86 1 0 3139 3224 42453312 42453227 1.550000e-33 154.0
5 TraesCS6B01G343400 chr6D 93.768 1733 89 4 691 2406 403399617 403401347 0.000000e+00 2584.0
6 TraesCS6B01G343400 chr6D 83.991 431 44 12 2705 3122 403404152 403404570 1.080000e-104 390.0
7 TraesCS6B01G343400 chr6D 97.917 96 2 0 2604 2699 403401796 403401891 1.990000e-37 167.0
8 TraesCS6B01G343400 chr6A 93.129 1732 86 7 690 2406 550065783 550064070 0.000000e+00 2508.0
9 TraesCS6B01G343400 chr6A 86.455 347 25 11 1434 1760 613243459 613243803 8.500000e-96 361.0
10 TraesCS6B01G343400 chr3B 90.972 576 45 3 1 570 427961588 427961014 0.000000e+00 769.0
11 TraesCS6B01G343400 chr3B 87.842 584 50 14 1 567 479839975 479839396 0.000000e+00 665.0
12 TraesCS6B01G343400 chr3B 97.753 89 1 1 3136 3224 94127510 94127423 5.570000e-33 152.0
13 TraesCS6B01G343400 chr3B 100.000 50 0 0 1 50 605925928 605925879 3.420000e-15 93.5
14 TraesCS6B01G343400 chr2D 89.691 291 27 2 1 291 645753122 645752835 5.080000e-98 368.0
15 TraesCS6B01G343400 chr2D 89.062 64 7 0 502 565 645744299 645744236 2.670000e-11 80.5
16 TraesCS6B01G343400 chr4B 98.492 199 3 0 2408 2606 373995922 373995724 5.120000e-93 351.0
17 TraesCS6B01G343400 chr1A 96.985 199 5 1 2408 2606 12264563 12264366 1.850000e-87 333.0
18 TraesCS6B01G343400 chr1A 95.631 206 8 1 2402 2606 530169965 530170170 2.400000e-86 329.0
19 TraesCS6B01G343400 chr5B 95.652 207 8 1 2401 2606 440262959 440262753 6.670000e-87 331.0
20 TraesCS6B01G343400 chr5B 98.824 85 1 0 3140 3224 46868171 46868087 5.570000e-33 152.0
21 TraesCS6B01G343400 chr2A 96.000 200 7 1 2408 2606 459445261 459445460 1.120000e-84 324.0
22 TraesCS6B01G343400 chr2A 95.074 203 10 0 2404 2606 226553715 226553917 1.440000e-83 320.0
23 TraesCS6B01G343400 chr2A 87.162 148 10 5 1618 1759 48483156 48483012 3.330000e-35 159.0
24 TraesCS6B01G343400 chr2A 98.851 87 0 1 3138 3224 443220300 443220385 1.550000e-33 154.0
25 TraesCS6B01G343400 chr7A 95.545 202 8 1 2406 2606 309580473 309580272 4.010000e-84 322.0
26 TraesCS6B01G343400 chr7A 83.618 293 36 6 161 447 95220340 95220626 6.860000e-67 265.0
27 TraesCS6B01G343400 chr7A 83.936 249 19 8 1532 1760 262857916 262857669 5.420000e-53 219.0
28 TraesCS6B01G343400 chr7A 100.000 85 0 0 3140 3224 726235649 726235565 1.200000e-34 158.0
29 TraesCS6B01G343400 chr7A 96.739 92 0 2 3135 3224 112577316 112577226 2.000000e-32 150.0
30 TraesCS6B01G343400 chr1B 95.980 199 7 1 2408 2606 18688726 18688923 4.010000e-84 322.0
31 TraesCS6B01G343400 chrUn 84.483 290 33 6 164 447 82670270 82669987 3.170000e-70 276.0
32 TraesCS6B01G343400 chrUn 84.483 290 33 6 164 447 82686823 82686540 3.170000e-70 276.0
33 TraesCS6B01G343400 chr4D 83.165 297 40 5 156 446 365039812 365039520 2.470000e-66 263.0
34 TraesCS6B01G343400 chr3D 82.712 295 43 7 156 446 372672100 372672390 4.130000e-64 255.0
35 TraesCS6B01G343400 chr5A 82.927 246 20 8 1529 1754 692853768 692854011 5.450000e-48 202.0
36 TraesCS6B01G343400 chr5A 97.753 89 0 2 3136 3224 360815598 360815512 5.570000e-33 152.0
37 TraesCS6B01G343400 chr2B 100.000 85 0 0 3140 3224 454685486 454685402 1.200000e-34 158.0
38 TraesCS6B01G343400 chr4A 100.000 84 0 0 3141 3224 718571556 718571473 4.310000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G343400 chr6B 604460900 604464123 3223 False 5954 5954 100.000 1 3224 1 chr6B.!!$F1 3223
1 TraesCS6B01G343400 chr6B 166253013 166253595 582 True 708 708 89.060 1 567 1 chr6B.!!$R2 566
2 TraesCS6B01G343400 chr6B 646438861 646439419 558 False 669 669 88.225 1 567 1 chr6B.!!$F2 566
3 TraesCS6B01G343400 chr6D 403399617 403404570 4953 False 1047 2584 91.892 691 3122 3 chr6D.!!$F1 2431
4 TraesCS6B01G343400 chr6A 550064070 550065783 1713 True 2508 2508 93.129 690 2406 1 chr6A.!!$R1 1716
5 TraesCS6B01G343400 chr3B 427961014 427961588 574 True 769 769 90.972 1 570 1 chr3B.!!$R2 569
6 TraesCS6B01G343400 chr3B 479839396 479839975 579 True 665 665 87.842 1 567 1 chr3B.!!$R3 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 607 0.240411 ACACGGACGTTCTGCTAGTC 59.76 55.0 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2499 2581 0.034089 GATTTCAGGTGGGGGTGGAG 60.034 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 7.184862 GGATATCCCAATGGACAAGGAATAAT 58.815 38.462 11.02 0.00 45.58 1.28
82 83 6.403636 GGAATAATTCTTGTTCAGACGCATGT 60.404 38.462 0.00 0.00 33.05 3.21
106 107 1.228552 ATGGGTGACTGTTGGTGCC 60.229 57.895 0.00 0.00 0.00 5.01
134 135 1.815408 GCTGTCCCATCGTGGCAATAT 60.815 52.381 0.00 0.00 35.79 1.28
142 143 4.761739 CCCATCGTGGCAATATAGATTTGT 59.238 41.667 0.00 0.00 35.79 2.83
151 152 4.261801 CAATATAGATTTGTAGGCGGGGG 58.738 47.826 0.00 0.00 0.00 5.40
184 185 5.273944 GTGATGGCATCGAGAAAAATTACC 58.726 41.667 21.65 0.00 0.00 2.85
219 220 2.664568 CGACATTGTACAGTAACACGGG 59.335 50.000 0.00 0.00 0.00 5.28
311 312 5.643379 ACATGTTTAAAATGGTGCTCGAT 57.357 34.783 0.00 0.00 0.00 3.59
389 390 2.680841 CCGAGCGGTCCATTGAATTTAA 59.319 45.455 9.39 0.00 0.00 1.52
473 504 2.907042 GAGGAAGGGAGAGACTGGAAAA 59.093 50.000 0.00 0.00 0.00 2.29
484 523 4.656112 AGAGACTGGAAAAAGTGGAGAGAA 59.344 41.667 0.00 0.00 0.00 2.87
543 583 6.370442 TCAAATATATGCATTGTAGCCCGTAC 59.630 38.462 3.54 0.00 0.00 3.67
561 601 0.808453 ACCAACACACGGACGTTCTG 60.808 55.000 0.00 0.00 0.00 3.02
567 607 0.240411 ACACGGACGTTCTGCTAGTC 59.760 55.000 0.00 0.00 0.00 2.59
570 610 2.355132 CACGGACGTTCTGCTAGTCTAT 59.645 50.000 0.00 0.00 35.42 1.98
571 611 3.015327 ACGGACGTTCTGCTAGTCTATT 58.985 45.455 0.00 0.00 35.42 1.73
572 612 3.442977 ACGGACGTTCTGCTAGTCTATTT 59.557 43.478 0.00 0.00 35.42 1.40
573 613 4.082354 ACGGACGTTCTGCTAGTCTATTTT 60.082 41.667 0.00 0.00 35.42 1.82
574 614 4.265556 CGGACGTTCTGCTAGTCTATTTTG 59.734 45.833 0.00 0.00 35.42 2.44
575 615 5.169295 GGACGTTCTGCTAGTCTATTTTGT 58.831 41.667 0.00 0.00 35.42 2.83
576 616 6.327934 GGACGTTCTGCTAGTCTATTTTGTA 58.672 40.000 0.00 0.00 35.42 2.41
577 617 6.979238 GGACGTTCTGCTAGTCTATTTTGTAT 59.021 38.462 0.00 0.00 35.42 2.29
578 618 7.167801 GGACGTTCTGCTAGTCTATTTTGTATC 59.832 40.741 0.00 0.00 35.42 2.24
579 619 6.979238 ACGTTCTGCTAGTCTATTTTGTATCC 59.021 38.462 0.00 0.00 0.00 2.59
580 620 6.421202 CGTTCTGCTAGTCTATTTTGTATCCC 59.579 42.308 0.00 0.00 0.00 3.85
581 621 7.272978 GTTCTGCTAGTCTATTTTGTATCCCA 58.727 38.462 0.00 0.00 0.00 4.37
582 622 6.817184 TCTGCTAGTCTATTTTGTATCCCAC 58.183 40.000 0.00 0.00 0.00 4.61
583 623 6.382859 TCTGCTAGTCTATTTTGTATCCCACA 59.617 38.462 0.00 0.00 34.51 4.17
584 624 6.346096 TGCTAGTCTATTTTGTATCCCACAC 58.654 40.000 0.00 0.00 36.69 3.82
585 625 5.758784 GCTAGTCTATTTTGTATCCCACACC 59.241 44.000 0.00 0.00 36.69 4.16
586 626 5.772393 AGTCTATTTTGTATCCCACACCA 57.228 39.130 0.00 0.00 36.69 4.17
587 627 6.327386 AGTCTATTTTGTATCCCACACCAT 57.673 37.500 0.00 0.00 36.69 3.55
588 628 6.357367 AGTCTATTTTGTATCCCACACCATC 58.643 40.000 0.00 0.00 36.69 3.51
589 629 6.158695 AGTCTATTTTGTATCCCACACCATCT 59.841 38.462 0.00 0.00 36.69 2.90
590 630 6.260936 GTCTATTTTGTATCCCACACCATCTG 59.739 42.308 0.00 0.00 36.69 2.90
591 631 4.380843 TTTTGTATCCCACACCATCTGT 57.619 40.909 0.00 0.00 36.69 3.41
592 632 5.506730 TTTTGTATCCCACACCATCTGTA 57.493 39.130 0.00 0.00 36.69 2.74
593 633 4.481368 TTGTATCCCACACCATCTGTAC 57.519 45.455 0.00 0.00 36.69 2.90
594 634 3.719871 TGTATCCCACACCATCTGTACT 58.280 45.455 0.00 0.00 30.04 2.73
595 635 4.101114 TGTATCCCACACCATCTGTACTT 58.899 43.478 0.00 0.00 30.04 2.24
596 636 4.534500 TGTATCCCACACCATCTGTACTTT 59.466 41.667 0.00 0.00 30.04 2.66
597 637 4.657814 ATCCCACACCATCTGTACTTTT 57.342 40.909 0.00 0.00 0.00 2.27
598 638 4.447138 TCCCACACCATCTGTACTTTTT 57.553 40.909 0.00 0.00 0.00 1.94
599 639 5.570205 TCCCACACCATCTGTACTTTTTA 57.430 39.130 0.00 0.00 0.00 1.52
600 640 6.134535 TCCCACACCATCTGTACTTTTTAT 57.865 37.500 0.00 0.00 0.00 1.40
601 641 6.177610 TCCCACACCATCTGTACTTTTTATC 58.822 40.000 0.00 0.00 0.00 1.75
602 642 5.943416 CCCACACCATCTGTACTTTTTATCA 59.057 40.000 0.00 0.00 0.00 2.15
603 643 6.432783 CCCACACCATCTGTACTTTTTATCAA 59.567 38.462 0.00 0.00 0.00 2.57
604 644 7.122650 CCCACACCATCTGTACTTTTTATCAAT 59.877 37.037 0.00 0.00 0.00 2.57
605 645 9.173021 CCACACCATCTGTACTTTTTATCAATA 57.827 33.333 0.00 0.00 0.00 1.90
647 687 3.671008 AAACGTACTGACCAGCATACA 57.329 42.857 0.00 0.00 0.00 2.29
648 688 3.671008 AACGTACTGACCAGCATACAA 57.329 42.857 0.00 0.00 0.00 2.41
649 689 3.232213 ACGTACTGACCAGCATACAAG 57.768 47.619 0.00 0.00 0.00 3.16
650 690 2.823747 ACGTACTGACCAGCATACAAGA 59.176 45.455 0.00 0.00 0.00 3.02
651 691 3.447586 ACGTACTGACCAGCATACAAGAT 59.552 43.478 0.00 0.00 0.00 2.40
652 692 4.081642 ACGTACTGACCAGCATACAAGATT 60.082 41.667 0.00 0.00 0.00 2.40
653 693 4.268644 CGTACTGACCAGCATACAAGATTG 59.731 45.833 0.00 0.00 0.00 2.67
654 694 4.292186 ACTGACCAGCATACAAGATTGT 57.708 40.909 3.37 3.37 44.86 2.71
655 695 5.420725 ACTGACCAGCATACAAGATTGTA 57.579 39.130 7.82 7.82 46.55 2.41
656 696 5.178797 ACTGACCAGCATACAAGATTGTAC 58.821 41.667 7.55 0.00 45.47 2.90
657 697 4.513442 TGACCAGCATACAAGATTGTACC 58.487 43.478 7.55 3.03 45.47 3.34
658 698 4.019771 TGACCAGCATACAAGATTGTACCA 60.020 41.667 7.55 0.00 45.47 3.25
659 699 4.261801 ACCAGCATACAAGATTGTACCAC 58.738 43.478 7.55 1.45 45.47 4.16
660 700 3.627577 CCAGCATACAAGATTGTACCACC 59.372 47.826 7.55 0.00 45.47 4.61
661 701 4.517285 CAGCATACAAGATTGTACCACCT 58.483 43.478 7.55 0.45 45.47 4.00
662 702 4.572389 CAGCATACAAGATTGTACCACCTC 59.428 45.833 7.55 0.00 45.47 3.85
663 703 3.555956 GCATACAAGATTGTACCACCTCG 59.444 47.826 7.55 0.00 45.47 4.63
664 704 4.679639 GCATACAAGATTGTACCACCTCGA 60.680 45.833 7.55 0.00 45.47 4.04
665 705 5.601662 CATACAAGATTGTACCACCTCGAT 58.398 41.667 7.55 0.00 45.47 3.59
666 706 3.861840 ACAAGATTGTACCACCTCGATG 58.138 45.455 0.00 0.00 40.16 3.84
667 707 3.260884 ACAAGATTGTACCACCTCGATGT 59.739 43.478 0.00 0.00 40.16 3.06
668 708 3.526931 AGATTGTACCACCTCGATGTG 57.473 47.619 13.29 13.29 35.98 3.21
669 709 2.832129 AGATTGTACCACCTCGATGTGT 59.168 45.455 17.87 9.71 34.35 3.72
670 710 4.021229 AGATTGTACCACCTCGATGTGTA 58.979 43.478 17.87 8.87 34.35 2.90
671 711 4.464951 AGATTGTACCACCTCGATGTGTAA 59.535 41.667 17.87 9.00 34.35 2.41
672 712 4.603989 TTGTACCACCTCGATGTGTAAA 57.396 40.909 17.87 5.09 34.35 2.01
673 713 3.916761 TGTACCACCTCGATGTGTAAAC 58.083 45.455 17.87 12.97 34.35 2.01
674 714 3.575256 TGTACCACCTCGATGTGTAAACT 59.425 43.478 17.87 0.37 34.35 2.66
675 715 3.040147 ACCACCTCGATGTGTAAACTG 57.960 47.619 17.87 5.72 34.35 3.16
676 716 2.289444 ACCACCTCGATGTGTAAACTGG 60.289 50.000 17.87 5.15 34.35 4.00
677 717 2.289444 CCACCTCGATGTGTAAACTGGT 60.289 50.000 17.87 0.16 34.35 4.00
678 718 3.399330 CACCTCGATGTGTAAACTGGTT 58.601 45.455 12.17 0.00 0.00 3.67
679 719 3.813166 CACCTCGATGTGTAAACTGGTTT 59.187 43.478 12.17 4.15 36.63 3.27
680 720 4.992319 CACCTCGATGTGTAAACTGGTTTA 59.008 41.667 12.17 2.26 34.23 2.01
681 721 5.467399 CACCTCGATGTGTAAACTGGTTTAA 59.533 40.000 12.17 0.00 36.86 1.52
682 722 6.017770 CACCTCGATGTGTAAACTGGTTTAAA 60.018 38.462 12.17 0.36 36.86 1.52
683 723 6.713450 ACCTCGATGTGTAAACTGGTTTAAAT 59.287 34.615 7.39 3.31 36.86 1.40
684 724 7.021196 CCTCGATGTGTAAACTGGTTTAAATG 58.979 38.462 7.39 0.00 36.86 2.32
685 725 6.375377 TCGATGTGTAAACTGGTTTAAATGC 58.625 36.000 7.39 0.00 36.86 3.56
686 726 5.282778 CGATGTGTAAACTGGTTTAAATGCG 59.717 40.000 7.39 4.96 36.86 4.73
687 727 5.752892 TGTGTAAACTGGTTTAAATGCGA 57.247 34.783 7.39 0.00 36.86 5.10
688 728 5.753744 TGTGTAAACTGGTTTAAATGCGAG 58.246 37.500 7.39 0.00 36.86 5.03
710 750 3.944250 CTGAATTGTGCCGCCCCCT 62.944 63.158 0.00 0.00 0.00 4.79
711 751 2.274104 GAATTGTGCCGCCCCCTA 59.726 61.111 0.00 0.00 0.00 3.53
880 930 2.444895 CTCCCTCCCTCCTTCCCG 60.445 72.222 0.00 0.00 0.00 5.14
894 944 2.367894 CCTTCCCGTCCTTCCTTATACC 59.632 54.545 0.00 0.00 0.00 2.73
914 964 2.793317 TACTTCCCGGCCGGTCTCTT 62.793 60.000 40.52 23.18 0.00 2.85
926 976 1.673033 CGGTCTCTTGATCGCAACCTT 60.673 52.381 0.00 0.00 40.09 3.50
927 977 2.416836 CGGTCTCTTGATCGCAACCTTA 60.417 50.000 0.00 0.00 40.09 2.69
943 993 1.592400 CTTACTCCTCGCCACCACGA 61.592 60.000 0.00 0.00 40.36 4.35
945 995 3.680786 CTCCTCGCCACCACGACA 61.681 66.667 0.00 0.00 37.09 4.35
1015 1065 2.721859 CGATGGAGATCGCCACGA 59.278 61.111 21.32 0.00 44.75 4.35
1053 1103 4.286320 GATGGCGCGGTCCTCGAT 62.286 66.667 8.83 0.00 42.43 3.59
1483 1539 2.257371 CGGACTTCGACTTCGGCA 59.743 61.111 0.00 0.00 42.43 5.69
1783 1839 1.227556 GACACCGCAACAGACACCT 60.228 57.895 0.00 0.00 0.00 4.00
1800 1856 0.250467 CCTTGCCGATGAATCCCGAT 60.250 55.000 0.00 0.00 0.00 4.18
2049 2105 2.932663 CGGGAAGCAGAAGAAGCAA 58.067 52.632 0.00 0.00 0.00 3.91
2051 2107 1.608590 CGGGAAGCAGAAGAAGCAAAA 59.391 47.619 0.00 0.00 0.00 2.44
2057 2113 4.725790 AGCAGAAGAAGCAAAACAAGTT 57.274 36.364 0.00 0.00 0.00 2.66
2059 2115 4.158394 AGCAGAAGAAGCAAAACAAGTTCA 59.842 37.500 0.00 0.00 0.00 3.18
2061 2117 4.501921 CAGAAGAAGCAAAACAAGTTCAGC 59.498 41.667 0.00 2.52 0.00 4.26
2064 2120 0.592247 AGCAAAACAAGTTCAGCGCG 60.592 50.000 0.00 0.00 0.00 6.86
2184 2240 1.582968 GTCCTCCACGTCGCACTTA 59.417 57.895 0.00 0.00 0.00 2.24
2228 2284 1.677576 CATGCACAGCGGGTAAATGAT 59.322 47.619 0.00 0.00 0.00 2.45
2229 2285 1.378531 TGCACAGCGGGTAAATGATC 58.621 50.000 0.00 0.00 0.00 2.92
2230 2286 1.339535 TGCACAGCGGGTAAATGATCA 60.340 47.619 0.00 0.00 0.00 2.92
2231 2287 1.949525 GCACAGCGGGTAAATGATCAT 59.050 47.619 1.18 1.18 0.00 2.45
2232 2288 2.031682 GCACAGCGGGTAAATGATCATC 60.032 50.000 9.06 0.00 0.00 2.92
2233 2289 2.221749 CACAGCGGGTAAATGATCATCG 59.778 50.000 9.06 8.94 0.00 3.84
2234 2290 2.102420 ACAGCGGGTAAATGATCATCGA 59.898 45.455 9.06 0.00 0.00 3.59
2235 2291 3.130633 CAGCGGGTAAATGATCATCGAA 58.869 45.455 9.06 0.00 0.00 3.71
2236 2292 3.059597 CAGCGGGTAAATGATCATCGAAC 60.060 47.826 9.06 7.49 0.00 3.95
2237 2293 2.223377 GCGGGTAAATGATCATCGAACC 59.777 50.000 18.93 18.93 0.00 3.62
2238 2294 2.806244 CGGGTAAATGATCATCGAACCC 59.194 50.000 27.82 27.82 0.00 4.11
2239 2295 2.806244 GGGTAAATGATCATCGAACCCG 59.194 50.000 25.62 0.00 37.07 5.28
2240 2296 2.223377 GGTAAATGATCATCGAACCCGC 59.777 50.000 9.06 0.00 35.37 6.13
2241 2297 2.332063 AAATGATCATCGAACCCGCT 57.668 45.000 9.06 0.00 35.37 5.52
2242 2298 1.871080 AATGATCATCGAACCCGCTC 58.129 50.000 9.06 0.00 35.37 5.03
2243 2299 0.319040 ATGATCATCGAACCCGCTCG 60.319 55.000 1.18 0.00 40.25 5.03
2282 2354 1.064946 CGCCCTAGCAGAACGAGAG 59.935 63.158 0.00 0.00 39.83 3.20
2302 2375 4.041198 AGAGACACCGTTTTTATTCCTCCA 59.959 41.667 0.00 0.00 0.00 3.86
2319 2392 3.328505 CTCCAAGCATTTCGCCATTTTT 58.671 40.909 0.00 0.00 44.04 1.94
2320 2393 4.493547 CTCCAAGCATTTCGCCATTTTTA 58.506 39.130 0.00 0.00 44.04 1.52
2347 2428 1.425412 AACACTGTACACCGCGATTC 58.575 50.000 8.23 0.00 0.00 2.52
2357 2438 2.416547 ACACCGCGATTCAGAAGAAATG 59.583 45.455 8.23 0.00 37.29 2.32
2396 2478 1.809619 CCATGTCCTACGTGCCGTG 60.810 63.158 10.01 0.00 41.39 4.94
2397 2479 1.080093 CATGTCCTACGTGCCGTGT 60.080 57.895 10.01 0.00 41.39 4.49
2401 2483 1.007038 TCCTACGTGCCGTGTGTTC 60.007 57.895 10.01 0.00 41.39 3.18
2406 2488 1.885388 CGTGCCGTGTGTTCCTTGA 60.885 57.895 0.00 0.00 0.00 3.02
2407 2489 1.433053 CGTGCCGTGTGTTCCTTGAA 61.433 55.000 0.00 0.00 0.00 2.69
2409 2491 1.133407 GTGCCGTGTGTTCCTTGAAAA 59.867 47.619 0.00 0.00 0.00 2.29
2410 2492 1.819288 TGCCGTGTGTTCCTTGAAAAA 59.181 42.857 0.00 0.00 0.00 1.94
2442 2524 2.166664 AGACCAGGTCTCACGAATTAGC 59.833 50.000 17.31 0.00 38.71 3.09
2444 2526 2.093973 ACCAGGTCTCACGAATTAGCAG 60.094 50.000 0.00 0.00 0.00 4.24
2445 2527 2.544685 CAGGTCTCACGAATTAGCAGG 58.455 52.381 0.00 0.00 0.00 4.85
2446 2528 2.093973 CAGGTCTCACGAATTAGCAGGT 60.094 50.000 0.00 0.00 0.00 4.00
2447 2529 2.093973 AGGTCTCACGAATTAGCAGGTG 60.094 50.000 0.00 0.00 0.00 4.00
2448 2530 2.094182 GGTCTCACGAATTAGCAGGTGA 60.094 50.000 0.00 0.00 37.77 4.02
2452 2534 2.094182 TCACGAATTAGCAGGTGAGACC 60.094 50.000 0.00 0.00 38.99 3.85
2453 2535 1.207329 ACGAATTAGCAGGTGAGACCC 59.793 52.381 0.00 0.00 39.75 4.46
2454 2536 1.207089 CGAATTAGCAGGTGAGACCCA 59.793 52.381 0.00 0.00 39.75 4.51
2456 2538 3.471680 GAATTAGCAGGTGAGACCCATC 58.528 50.000 0.00 0.00 39.75 3.51
2457 2539 1.204146 TTAGCAGGTGAGACCCATCC 58.796 55.000 0.00 0.00 39.75 3.51
2458 2540 0.339859 TAGCAGGTGAGACCCATCCT 59.660 55.000 0.00 0.00 39.75 3.24
2460 2542 1.267574 GCAGGTGAGACCCATCCTGA 61.268 60.000 13.26 0.00 42.00 3.86
2461 2543 1.504912 CAGGTGAGACCCATCCTGAT 58.495 55.000 4.28 0.00 42.00 2.90
2475 2557 1.409064 TCCTGATGGATGACACGTAGC 59.591 52.381 0.00 0.00 37.46 3.58
2476 2558 1.136891 CCTGATGGATGACACGTAGCA 59.863 52.381 0.00 0.00 34.57 3.49
2477 2559 2.224137 CCTGATGGATGACACGTAGCAT 60.224 50.000 2.33 2.33 34.57 3.79
2478 2560 3.055591 CTGATGGATGACACGTAGCATC 58.944 50.000 17.07 17.07 40.05 3.91
2482 2564 2.293677 GATGACACGTAGCATCCACA 57.706 50.000 15.31 0.00 35.91 4.17
2483 2565 2.616960 GATGACACGTAGCATCCACAA 58.383 47.619 15.31 0.00 35.91 3.33
2484 2566 2.535012 TGACACGTAGCATCCACAAA 57.465 45.000 0.00 0.00 0.00 2.83
2485 2567 3.052455 TGACACGTAGCATCCACAAAT 57.948 42.857 0.00 0.00 0.00 2.32
2486 2568 3.000041 TGACACGTAGCATCCACAAATC 59.000 45.455 0.00 0.00 0.00 2.17
2487 2569 3.000041 GACACGTAGCATCCACAAATCA 59.000 45.455 0.00 0.00 0.00 2.57
2488 2570 2.742053 ACACGTAGCATCCACAAATCAC 59.258 45.455 0.00 0.00 0.00 3.06
2490 2572 3.188254 CACGTAGCATCCACAAATCACAA 59.812 43.478 0.00 0.00 0.00 3.33
2492 2574 4.083324 ACGTAGCATCCACAAATCACAAAG 60.083 41.667 0.00 0.00 0.00 2.77
2494 2576 2.629137 AGCATCCACAAATCACAAAGCA 59.371 40.909 0.00 0.00 0.00 3.91
2497 2579 3.451141 TCCACAAATCACAAAGCAACC 57.549 42.857 0.00 0.00 0.00 3.77
2498 2580 2.762887 TCCACAAATCACAAAGCAACCA 59.237 40.909 0.00 0.00 0.00 3.67
2499 2581 2.865551 CCACAAATCACAAAGCAACCAC 59.134 45.455 0.00 0.00 0.00 4.16
2500 2582 3.430651 CCACAAATCACAAAGCAACCACT 60.431 43.478 0.00 0.00 0.00 4.00
2501 2583 3.798337 CACAAATCACAAAGCAACCACTC 59.202 43.478 0.00 0.00 0.00 3.51
2502 2584 3.181476 ACAAATCACAAAGCAACCACTCC 60.181 43.478 0.00 0.00 0.00 3.85
2503 2585 2.363306 ATCACAAAGCAACCACTCCA 57.637 45.000 0.00 0.00 0.00 3.86
2504 2586 1.388547 TCACAAAGCAACCACTCCAC 58.611 50.000 0.00 0.00 0.00 4.02
2505 2587 0.385390 CACAAAGCAACCACTCCACC 59.615 55.000 0.00 0.00 0.00 4.61
2506 2588 0.755327 ACAAAGCAACCACTCCACCC 60.755 55.000 0.00 0.00 0.00 4.61
2508 2590 2.656698 AAAGCAACCACTCCACCCCC 62.657 60.000 0.00 0.00 0.00 5.40
2510 2592 2.115266 CAACCACTCCACCCCCAC 59.885 66.667 0.00 0.00 0.00 4.61
2511 2593 3.182996 AACCACTCCACCCCCACC 61.183 66.667 0.00 0.00 0.00 4.61
2512 2594 3.749947 AACCACTCCACCCCCACCT 62.750 63.158 0.00 0.00 0.00 4.00
2514 2596 2.529136 CACTCCACCCCCACCTGA 60.529 66.667 0.00 0.00 0.00 3.86
2515 2597 2.153401 CACTCCACCCCCACCTGAA 61.153 63.158 0.00 0.00 0.00 3.02
2516 2598 1.386772 ACTCCACCCCCACCTGAAA 60.387 57.895 0.00 0.00 0.00 2.69
2517 2599 0.776080 ACTCCACCCCCACCTGAAAT 60.776 55.000 0.00 0.00 0.00 2.17
2518 2600 0.034089 CTCCACCCCCACCTGAAATC 60.034 60.000 0.00 0.00 0.00 2.17
2519 2601 0.774096 TCCACCCCCACCTGAAATCA 60.774 55.000 0.00 0.00 0.00 2.57
2520 2602 0.323725 CCACCCCCACCTGAAATCAG 60.324 60.000 3.37 3.37 43.40 2.90
2543 2625 3.749226 GGGGGAGAGATTAGATGCTTTG 58.251 50.000 0.00 0.00 0.00 2.77
2544 2626 3.137360 GGGGGAGAGATTAGATGCTTTGT 59.863 47.826 0.00 0.00 0.00 2.83
2545 2627 4.133078 GGGGAGAGATTAGATGCTTTGTG 58.867 47.826 0.00 0.00 0.00 3.33
2546 2628 4.141620 GGGGAGAGATTAGATGCTTTGTGA 60.142 45.833 0.00 0.00 0.00 3.58
2548 2630 6.060788 GGGAGAGATTAGATGCTTTGTGATT 58.939 40.000 0.00 0.00 0.00 2.57
2549 2631 6.545298 GGGAGAGATTAGATGCTTTGTGATTT 59.455 38.462 0.00 0.00 0.00 2.17
2550 2632 7.416022 GGAGAGATTAGATGCTTTGTGATTTG 58.584 38.462 0.00 0.00 0.00 2.32
2551 2633 7.066766 GGAGAGATTAGATGCTTTGTGATTTGT 59.933 37.037 0.00 0.00 0.00 2.83
2553 2635 7.609146 AGAGATTAGATGCTTTGTGATTTGTGA 59.391 33.333 0.00 0.00 0.00 3.58
2554 2636 8.114331 AGATTAGATGCTTTGTGATTTGTGAA 57.886 30.769 0.00 0.00 0.00 3.18
2555 2637 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
2556 2638 8.697846 ATTAGATGCTTTGTGATTTGTGAATG 57.302 30.769 0.00 0.00 0.00 2.67
2558 2640 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
2560 2642 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
2573 2655 4.642445 GAATGCCACATGTCATTCATCA 57.358 40.909 24.71 6.53 44.71 3.07
2575 2657 2.371306 TGCCACATGTCATTCATCAGG 58.629 47.619 0.00 0.00 34.09 3.86
2576 2658 1.679680 GCCACATGTCATTCATCAGGG 59.320 52.381 0.00 0.00 34.09 4.45
2578 2660 1.332686 CACATGTCATTCATCAGGGCG 59.667 52.381 0.00 0.00 34.09 6.13
2582 2664 0.815615 GTCATTCATCAGGGCGGGTC 60.816 60.000 0.00 0.00 0.00 4.46
2583 2665 0.982852 TCATTCATCAGGGCGGGTCT 60.983 55.000 0.00 0.00 0.00 3.85
2584 2666 0.533755 CATTCATCAGGGCGGGTCTC 60.534 60.000 0.00 0.00 0.00 3.36
2585 2667 0.982852 ATTCATCAGGGCGGGTCTCA 60.983 55.000 0.00 0.00 0.00 3.27
2601 2683 6.672266 GGGTCTCACCTGATTTATATGAGA 57.328 41.667 0.00 0.00 42.63 3.27
2675 3008 1.082117 GCAAGTGGACCGTACCATCG 61.082 60.000 1.35 0.00 42.17 3.84
2703 3036 2.494918 CCGACAGGTCCATCCGTC 59.505 66.667 0.00 0.00 41.99 4.79
2704 3037 2.494918 CGACAGGTCCATCCGTCC 59.505 66.667 0.00 0.00 41.99 4.79
2706 3039 1.676678 CGACAGGTCCATCCGTCCAT 61.677 60.000 0.00 0.00 41.99 3.41
2707 3040 0.179073 GACAGGTCCATCCGTCCATG 60.179 60.000 0.00 0.00 41.99 3.66
2708 3041 0.909610 ACAGGTCCATCCGTCCATGT 60.910 55.000 0.00 0.00 41.99 3.21
2773 5361 1.212751 GATTTGGGCTTCACGGTGC 59.787 57.895 2.51 0.00 0.00 5.01
2774 5362 1.228552 ATTTGGGCTTCACGGTGCT 60.229 52.632 2.51 0.00 0.00 4.40
2775 5363 0.037590 ATTTGGGCTTCACGGTGCTA 59.962 50.000 2.51 0.00 0.00 3.49
2794 5382 5.579511 GTGCTAGCGTTAAGGACATCTTTAA 59.420 40.000 10.77 0.00 35.57 1.52
2800 5388 5.290158 GCGTTAAGGACATCTTTAATGTCGA 59.710 40.000 13.92 0.00 46.85 4.20
2801 5389 6.018994 GCGTTAAGGACATCTTTAATGTCGAT 60.019 38.462 13.92 6.02 46.85 3.59
2804 5392 8.879759 GTTAAGGACATCTTTAATGTCGATCAA 58.120 33.333 10.98 2.17 46.85 2.57
2805 5393 7.545362 AAGGACATCTTTAATGTCGATCAAG 57.455 36.000 10.98 0.00 46.85 3.02
2807 5395 6.758886 AGGACATCTTTAATGTCGATCAAGAC 59.241 38.462 10.98 0.00 46.85 3.01
2827 5418 3.025978 ACGGACATCCCAAACGTCTATA 58.974 45.455 0.00 0.00 31.39 1.31
2861 5453 7.226523 CCAGACATGTTCGTGATAATGGATAAA 59.773 37.037 0.00 0.00 0.00 1.40
2866 5458 5.131308 TGTTCGTGATAATGGATAAAGGGGA 59.869 40.000 0.00 0.00 0.00 4.81
2869 5461 4.041691 CGTGATAATGGATAAAGGGGAGGT 59.958 45.833 0.00 0.00 0.00 3.85
2891 5488 4.823989 GTCATCCAACCCTATTCATCAAGG 59.176 45.833 0.00 0.00 0.00 3.61
2905 5502 3.776969 TCATCAAGGACACATCTAGCCTT 59.223 43.478 0.00 0.00 41.22 4.35
2909 5506 3.356529 AGGACACATCTAGCCTTTTGG 57.643 47.619 0.00 0.00 44.18 3.28
2931 5528 2.634815 AGCTAATGTGAGCCCATCAG 57.365 50.000 0.00 0.00 43.97 2.90
2934 5531 2.843701 CTAATGTGAGCCCATCAGGTC 58.156 52.381 0.00 0.00 39.07 3.85
2935 5532 0.107508 AATGTGAGCCCATCAGGTCG 60.108 55.000 0.00 0.00 39.07 4.79
2936 5533 0.977627 ATGTGAGCCCATCAGGTCGA 60.978 55.000 0.00 0.00 39.07 4.20
2948 5545 4.564821 CCATCAGGTCGAAAAACCCTAAGA 60.565 45.833 0.00 0.00 40.42 2.10
2952 5549 2.733552 GGTCGAAAAACCCTAAGACGAC 59.266 50.000 0.00 0.00 44.66 4.34
2964 5561 2.663826 AAGACGACTGAGAGGCAATC 57.336 50.000 0.00 0.00 0.00 2.67
2965 5562 1.550327 AGACGACTGAGAGGCAATCA 58.450 50.000 0.00 0.00 0.00 2.57
2967 5564 0.109086 ACGACTGAGAGGCAATCACG 60.109 55.000 0.00 0.00 0.00 4.35
2998 5595 4.821589 AGAGCCGGCTTGCTACGC 62.822 66.667 33.34 16.21 42.95 4.42
3004 5601 1.421485 CGGCTTGCTACGCTTTCTG 59.579 57.895 0.00 0.00 0.00 3.02
3005 5602 1.135523 GGCTTGCTACGCTTTCTGC 59.864 57.895 0.00 0.00 38.57 4.26
3015 5612 2.555547 GCTTTCTGCGCTGGGTTGT 61.556 57.895 14.70 0.00 0.00 3.32
3016 5613 1.576421 CTTTCTGCGCTGGGTTGTC 59.424 57.895 14.70 0.00 0.00 3.18
3023 5620 1.696832 GCGCTGGGTTGTCGATCTTC 61.697 60.000 0.00 0.00 0.00 2.87
3025 5622 0.036388 GCTGGGTTGTCGATCTTCCA 60.036 55.000 0.00 0.00 0.00 3.53
3026 5623 1.610624 GCTGGGTTGTCGATCTTCCAA 60.611 52.381 0.00 0.00 0.00 3.53
3040 5637 0.106918 TTCCAACGGTGCAAGGACTT 60.107 50.000 0.00 0.00 0.00 3.01
3049 5646 3.257933 CAAGGACTTGCGTCAGCC 58.742 61.111 0.00 0.00 44.33 4.85
3051 5648 3.553095 AAGGACTTGCGTCAGCCCC 62.553 63.158 0.00 0.00 44.33 5.80
3053 5650 4.373116 GACTTGCGTCAGCCCCGA 62.373 66.667 0.00 0.00 44.33 5.14
3054 5651 4.379243 ACTTGCGTCAGCCCCGAG 62.379 66.667 0.00 0.00 44.33 4.63
3087 5685 2.427453 TGGCGTTAGAGATCTCCTGTTC 59.573 50.000 19.30 6.26 0.00 3.18
3097 5695 2.215942 TCTCCTGTTCGATGTCTCCA 57.784 50.000 0.00 0.00 0.00 3.86
3101 5699 2.093500 TCCTGTTCGATGTCTCCAATGG 60.093 50.000 0.00 0.00 0.00 3.16
3107 5705 1.766143 GATGTCTCCAATGGCGACGC 61.766 60.000 16.50 12.43 39.98 5.19
3140 5739 3.173853 GCAACGCCTGCGAATACA 58.826 55.556 19.52 0.00 42.37 2.29
3141 5740 1.226018 GCAACGCCTGCGAATACAC 60.226 57.895 19.52 0.00 42.37 2.90
3142 5741 1.635663 GCAACGCCTGCGAATACACT 61.636 55.000 19.52 0.00 42.37 3.55
3143 5742 0.370273 CAACGCCTGCGAATACACTC 59.630 55.000 19.52 0.00 42.83 3.51
3144 5743 0.037697 AACGCCTGCGAATACACTCA 60.038 50.000 19.52 0.00 42.83 3.41
3145 5744 0.736325 ACGCCTGCGAATACACTCAC 60.736 55.000 19.52 0.00 42.83 3.51
3146 5745 0.458543 CGCCTGCGAATACACTCACT 60.459 55.000 5.43 0.00 42.83 3.41
3147 5746 1.202256 CGCCTGCGAATACACTCACTA 60.202 52.381 5.43 0.00 42.83 2.74
3148 5747 2.464865 GCCTGCGAATACACTCACTAG 58.535 52.381 0.00 0.00 0.00 2.57
3149 5748 2.159226 GCCTGCGAATACACTCACTAGT 60.159 50.000 0.00 0.00 35.91 2.57
3150 5749 3.066342 GCCTGCGAATACACTCACTAGTA 59.934 47.826 0.00 0.00 33.48 1.82
3151 5750 4.790123 GCCTGCGAATACACTCACTAGTAG 60.790 50.000 0.00 0.00 33.48 2.57
3152 5751 4.575236 CCTGCGAATACACTCACTAGTAGA 59.425 45.833 3.59 0.00 33.48 2.59
3153 5752 5.066117 CCTGCGAATACACTCACTAGTAGAA 59.934 44.000 3.59 0.00 33.48 2.10
3154 5753 6.404403 CCTGCGAATACACTCACTAGTAGAAA 60.404 42.308 3.59 0.00 33.48 2.52
3155 5754 6.916440 TGCGAATACACTCACTAGTAGAAAA 58.084 36.000 3.59 0.00 33.48 2.29
3156 5755 6.805271 TGCGAATACACTCACTAGTAGAAAAC 59.195 38.462 3.59 0.00 33.48 2.43
3157 5756 6.805271 GCGAATACACTCACTAGTAGAAAACA 59.195 38.462 3.59 0.00 33.48 2.83
3158 5757 7.008447 GCGAATACACTCACTAGTAGAAAACAG 59.992 40.741 3.59 0.00 33.48 3.16
3159 5758 7.485277 CGAATACACTCACTAGTAGAAAACAGG 59.515 40.741 3.59 0.00 33.48 4.00
3160 5759 5.470047 ACACTCACTAGTAGAAAACAGGG 57.530 43.478 3.59 0.00 33.48 4.45
3161 5760 4.246458 CACTCACTAGTAGAAAACAGGGC 58.754 47.826 3.59 0.00 33.48 5.19
3162 5761 4.021016 CACTCACTAGTAGAAAACAGGGCT 60.021 45.833 3.59 0.00 33.48 5.19
3163 5762 4.593634 ACTCACTAGTAGAAAACAGGGCTT 59.406 41.667 3.59 0.00 32.84 4.35
3164 5763 5.071923 ACTCACTAGTAGAAAACAGGGCTTT 59.928 40.000 3.59 0.00 32.84 3.51
3165 5764 5.548406 TCACTAGTAGAAAACAGGGCTTTC 58.452 41.667 3.59 0.00 33.75 2.62
3166 5765 4.389077 CACTAGTAGAAAACAGGGCTTTCG 59.611 45.833 3.59 0.00 37.76 3.46
3167 5766 3.487120 AGTAGAAAACAGGGCTTTCGT 57.513 42.857 0.00 0.00 37.76 3.85
3168 5767 3.400255 AGTAGAAAACAGGGCTTTCGTC 58.600 45.455 0.00 0.00 37.76 4.20
3169 5768 1.605753 AGAAAACAGGGCTTTCGTCC 58.394 50.000 0.00 0.00 37.76 4.79
3170 5769 1.133915 AGAAAACAGGGCTTTCGTCCA 60.134 47.619 0.00 0.00 37.38 4.02
3171 5770 1.266989 GAAAACAGGGCTTTCGTCCAG 59.733 52.381 0.00 0.00 37.38 3.86
3172 5771 0.537371 AAACAGGGCTTTCGTCCAGG 60.537 55.000 0.00 0.00 37.38 4.45
3173 5772 2.747855 CAGGGCTTTCGTCCAGGC 60.748 66.667 0.00 0.00 37.38 4.85
3176 5775 2.747855 GGCTTTCGTCCAGGCCAG 60.748 66.667 5.01 0.00 43.59 4.85
3177 5776 2.032681 GCTTTCGTCCAGGCCAGT 59.967 61.111 5.01 0.00 0.00 4.00
3178 5777 1.600916 GCTTTCGTCCAGGCCAGTT 60.601 57.895 5.01 0.00 0.00 3.16
3179 5778 1.172812 GCTTTCGTCCAGGCCAGTTT 61.173 55.000 5.01 0.00 0.00 2.66
3180 5779 1.880646 GCTTTCGTCCAGGCCAGTTTA 60.881 52.381 5.01 0.00 0.00 2.01
3181 5780 2.076863 CTTTCGTCCAGGCCAGTTTAG 58.923 52.381 5.01 0.00 0.00 1.85
3182 5781 0.321298 TTCGTCCAGGCCAGTTTAGC 60.321 55.000 5.01 0.00 0.00 3.09
3190 5789 2.437085 GGCCAGTTTAGCCCATTAGT 57.563 50.000 0.00 0.00 45.16 2.24
3191 5790 2.298610 GGCCAGTTTAGCCCATTAGTC 58.701 52.381 0.00 0.00 45.16 2.59
3192 5791 2.298610 GCCAGTTTAGCCCATTAGTCC 58.701 52.381 0.00 0.00 0.00 3.85
3193 5792 2.932261 CCAGTTTAGCCCATTAGTCCC 58.068 52.381 0.00 0.00 0.00 4.46
3194 5793 2.561569 CAGTTTAGCCCATTAGTCCCG 58.438 52.381 0.00 0.00 0.00 5.14
3195 5794 1.489230 AGTTTAGCCCATTAGTCCCGG 59.511 52.381 0.00 0.00 0.00 5.73
3196 5795 1.211212 GTTTAGCCCATTAGTCCCGGT 59.789 52.381 0.00 0.00 0.00 5.28
3197 5796 1.587066 TTAGCCCATTAGTCCCGGTT 58.413 50.000 0.00 0.00 0.00 4.44
3198 5797 1.125633 TAGCCCATTAGTCCCGGTTC 58.874 55.000 0.00 0.00 0.00 3.62
3199 5798 0.912487 AGCCCATTAGTCCCGGTTCA 60.912 55.000 0.00 0.00 0.00 3.18
3200 5799 0.034863 GCCCATTAGTCCCGGTTCAA 60.035 55.000 0.00 0.00 0.00 2.69
3201 5800 1.409661 GCCCATTAGTCCCGGTTCAAT 60.410 52.381 0.00 0.00 0.00 2.57
3202 5801 2.572290 CCCATTAGTCCCGGTTCAATC 58.428 52.381 0.00 0.00 0.00 2.67
3203 5802 2.572290 CCATTAGTCCCGGTTCAATCC 58.428 52.381 0.00 0.00 0.00 3.01
3204 5803 2.092646 CCATTAGTCCCGGTTCAATCCA 60.093 50.000 0.00 0.00 0.00 3.41
3205 5804 3.206150 CATTAGTCCCGGTTCAATCCAG 58.794 50.000 0.00 0.00 0.00 3.86
3206 5805 2.241281 TAGTCCCGGTTCAATCCAGA 57.759 50.000 0.00 0.00 0.00 3.86
3207 5806 1.358152 AGTCCCGGTTCAATCCAGAA 58.642 50.000 0.00 0.00 0.00 3.02
3208 5807 1.003233 AGTCCCGGTTCAATCCAGAAC 59.997 52.381 0.00 0.00 45.50 3.01
3213 5812 3.948735 GTTCAATCCAGAACCGGGA 57.051 52.632 6.32 0.00 41.52 5.14
3214 5813 1.450025 GTTCAATCCAGAACCGGGAC 58.550 55.000 6.32 0.00 41.52 4.46
3215 5814 0.326927 TTCAATCCAGAACCGGGACC 59.673 55.000 6.32 0.00 37.23 4.46
3216 5815 0.838554 TCAATCCAGAACCGGGACCA 60.839 55.000 6.32 0.00 37.23 4.02
3217 5816 0.037590 CAATCCAGAACCGGGACCAA 59.962 55.000 6.32 0.00 37.23 3.67
3218 5817 0.999712 AATCCAGAACCGGGACCAAT 59.000 50.000 6.32 0.00 37.23 3.16
3219 5818 0.255890 ATCCAGAACCGGGACCAATG 59.744 55.000 6.32 0.00 37.23 2.82
3220 5819 1.378514 CCAGAACCGGGACCAATGG 60.379 63.158 6.32 0.00 0.00 3.16
3221 5820 1.682849 CAGAACCGGGACCAATGGA 59.317 57.895 6.16 0.00 0.00 3.41
3222 5821 0.392998 CAGAACCGGGACCAATGGAG 60.393 60.000 6.16 0.00 0.00 3.86
3223 5822 1.749258 GAACCGGGACCAATGGAGC 60.749 63.158 6.16 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.286950 GCAACATGCGTCTGAACAAGAA 60.287 45.455 0.00 0.00 32.35 2.52
82 83 0.827089 CAACAGTCACCCATGGGCAA 60.827 55.000 31.73 16.45 39.32 4.52
134 135 2.475339 TACCCCCGCCTACAAATCTA 57.525 50.000 0.00 0.00 0.00 1.98
142 143 3.091850 GGCCTTTACCCCCGCCTA 61.092 66.667 0.00 0.00 38.41 3.93
184 185 1.086067 ATGTCGATGCCTTGCTCGTG 61.086 55.000 0.00 0.00 36.33 4.35
219 220 3.349006 CAGAGGGCACACACACGC 61.349 66.667 0.00 0.00 0.00 5.34
238 239 2.421739 GATACCTGTCGCCGCCAT 59.578 61.111 0.00 0.00 0.00 4.40
243 244 1.006102 CCGATGGATACCTGTCGCC 60.006 63.158 0.00 0.00 33.50 5.54
279 280 6.644592 ACCATTTTAAACATGTATGTGTGTGC 59.355 34.615 0.00 0.00 41.61 4.57
323 324 3.044894 TGTACCATCCACATGCCAGATA 58.955 45.455 0.00 0.00 0.00 1.98
358 359 1.776034 GACCGCTCGGAATCCAATGC 61.776 60.000 15.95 0.00 38.96 3.56
430 431 4.464244 TCCACTCACACTTGATAGAAGAGG 59.536 45.833 0.00 0.00 0.00 3.69
473 504 9.280456 TCCTATAATAACCTTTTCTCTCCACTT 57.720 33.333 0.00 0.00 0.00 3.16
510 549 9.486497 CTACAATGCATATATTTGAGTGACTCT 57.514 33.333 14.42 0.00 0.00 3.24
543 583 1.931551 CAGAACGTCCGTGTGTTGG 59.068 57.895 0.00 0.00 0.00 3.77
554 594 6.979238 GGATACAAAATAGACTAGCAGAACGT 59.021 38.462 0.00 0.00 0.00 3.99
561 601 5.758784 GGTGTGGGATACAAAATAGACTAGC 59.241 44.000 0.00 0.00 41.89 3.42
567 607 6.122277 ACAGATGGTGTGGGATACAAAATAG 58.878 40.000 0.00 0.00 41.89 1.73
570 610 4.380843 ACAGATGGTGTGGGATACAAAA 57.619 40.909 0.00 0.00 41.89 2.44
571 611 4.534500 AGTACAGATGGTGTGGGATACAAA 59.466 41.667 0.00 0.00 41.89 2.83
572 612 4.101114 AGTACAGATGGTGTGGGATACAA 58.899 43.478 0.00 0.00 41.89 2.41
573 613 3.719871 AGTACAGATGGTGTGGGATACA 58.280 45.455 0.00 0.00 40.69 2.29
574 614 4.755266 AAGTACAGATGGTGTGGGATAC 57.245 45.455 0.00 0.00 40.69 2.24
575 615 5.772393 AAAAGTACAGATGGTGTGGGATA 57.228 39.130 0.00 0.00 40.69 2.59
576 616 4.657814 AAAAGTACAGATGGTGTGGGAT 57.342 40.909 0.00 0.00 40.69 3.85
577 617 4.447138 AAAAAGTACAGATGGTGTGGGA 57.553 40.909 0.00 0.00 40.69 4.37
578 618 5.943416 TGATAAAAAGTACAGATGGTGTGGG 59.057 40.000 0.00 0.00 40.69 4.61
579 619 7.447374 TTGATAAAAAGTACAGATGGTGTGG 57.553 36.000 0.00 0.00 40.69 4.17
625 665 4.382291 TGTATGCTGGTCAGTACGTTTTT 58.618 39.130 0.00 0.00 0.00 1.94
626 666 3.997762 TGTATGCTGGTCAGTACGTTTT 58.002 40.909 0.00 0.00 0.00 2.43
627 667 3.671008 TGTATGCTGGTCAGTACGTTT 57.329 42.857 0.00 0.00 0.00 3.60
628 668 3.257375 TCTTGTATGCTGGTCAGTACGTT 59.743 43.478 0.00 0.00 0.00 3.99
629 669 2.823747 TCTTGTATGCTGGTCAGTACGT 59.176 45.455 0.00 0.00 0.00 3.57
630 670 3.503827 TCTTGTATGCTGGTCAGTACG 57.496 47.619 0.00 0.00 0.00 3.67
631 671 5.178797 ACAATCTTGTATGCTGGTCAGTAC 58.821 41.667 0.00 0.00 40.16 2.73
632 672 5.420725 ACAATCTTGTATGCTGGTCAGTA 57.579 39.130 0.00 0.00 40.16 2.74
633 673 4.292186 ACAATCTTGTATGCTGGTCAGT 57.708 40.909 0.00 0.00 40.16 3.41
634 674 4.572389 GGTACAATCTTGTATGCTGGTCAG 59.428 45.833 6.10 0.00 44.59 3.51
635 675 4.019771 TGGTACAATCTTGTATGCTGGTCA 60.020 41.667 6.10 0.00 44.59 4.02
636 676 4.332819 GTGGTACAATCTTGTATGCTGGTC 59.667 45.833 6.10 0.00 44.59 4.02
637 677 4.261801 GTGGTACAATCTTGTATGCTGGT 58.738 43.478 6.10 0.00 44.59 4.00
638 678 3.627577 GGTGGTACAATCTTGTATGCTGG 59.372 47.826 6.10 0.00 44.59 4.85
639 679 4.517285 AGGTGGTACAATCTTGTATGCTG 58.483 43.478 6.10 0.00 44.59 4.41
640 680 4.680708 CGAGGTGGTACAATCTTGTATGCT 60.681 45.833 6.10 0.00 44.59 3.79
641 681 3.555956 CGAGGTGGTACAATCTTGTATGC 59.444 47.826 6.10 1.07 44.59 3.14
642 682 5.006153 TCGAGGTGGTACAATCTTGTATG 57.994 43.478 6.10 0.00 44.59 2.39
643 683 5.128827 ACATCGAGGTGGTACAATCTTGTAT 59.871 40.000 0.00 0.00 44.59 2.29
644 684 4.464951 ACATCGAGGTGGTACAATCTTGTA 59.535 41.667 0.00 0.00 44.16 2.41
645 685 3.260884 ACATCGAGGTGGTACAATCTTGT 59.739 43.478 0.00 0.69 44.16 3.16
646 686 3.618594 CACATCGAGGTGGTACAATCTTG 59.381 47.826 21.98 0.00 44.16 3.02
647 687 3.260884 ACACATCGAGGTGGTACAATCTT 59.739 43.478 31.08 6.75 44.16 2.40
648 688 2.832129 ACACATCGAGGTGGTACAATCT 59.168 45.455 31.08 7.48 44.16 2.40
649 689 3.247006 ACACATCGAGGTGGTACAATC 57.753 47.619 31.08 0.00 44.16 2.67
650 690 4.811969 TTACACATCGAGGTGGTACAAT 57.188 40.909 31.08 13.70 44.16 2.71
651 691 4.039488 AGTTTACACATCGAGGTGGTACAA 59.961 41.667 31.08 17.21 44.16 2.41
652 692 3.575256 AGTTTACACATCGAGGTGGTACA 59.425 43.478 31.08 12.61 43.08 2.90
653 693 3.924686 CAGTTTACACATCGAGGTGGTAC 59.075 47.826 31.08 23.64 43.08 3.34
654 694 3.056393 CCAGTTTACACATCGAGGTGGTA 60.056 47.826 31.08 18.63 43.08 3.25
655 695 2.289444 CCAGTTTACACATCGAGGTGGT 60.289 50.000 31.08 19.55 43.08 4.16
656 696 2.289444 ACCAGTTTACACATCGAGGTGG 60.289 50.000 31.08 15.89 43.08 4.61
657 697 3.040147 ACCAGTTTACACATCGAGGTG 57.960 47.619 27.18 27.18 44.35 4.00
658 698 3.764237 AACCAGTTTACACATCGAGGT 57.236 42.857 0.00 0.00 0.00 3.85
659 699 6.548441 TTTAAACCAGTTTACACATCGAGG 57.452 37.500 2.51 0.00 35.05 4.63
660 700 6.523201 GCATTTAAACCAGTTTACACATCGAG 59.477 38.462 2.51 0.00 35.05 4.04
661 701 6.375377 GCATTTAAACCAGTTTACACATCGA 58.625 36.000 2.51 0.00 35.05 3.59
662 702 5.282778 CGCATTTAAACCAGTTTACACATCG 59.717 40.000 2.51 1.16 35.05 3.84
663 703 6.375377 TCGCATTTAAACCAGTTTACACATC 58.625 36.000 2.51 0.00 35.05 3.06
664 704 6.205853 TCTCGCATTTAAACCAGTTTACACAT 59.794 34.615 2.51 0.00 35.05 3.21
665 705 5.527951 TCTCGCATTTAAACCAGTTTACACA 59.472 36.000 2.51 0.00 35.05 3.72
666 706 5.849604 GTCTCGCATTTAAACCAGTTTACAC 59.150 40.000 2.51 0.00 35.05 2.90
667 707 5.333492 CGTCTCGCATTTAAACCAGTTTACA 60.333 40.000 2.51 0.00 35.05 2.41
668 708 5.077424 CGTCTCGCATTTAAACCAGTTTAC 58.923 41.667 2.51 0.00 35.05 2.01
669 709 5.272167 CGTCTCGCATTTAAACCAGTTTA 57.728 39.130 0.00 0.00 34.23 2.01
670 710 4.141855 CGTCTCGCATTTAAACCAGTTT 57.858 40.909 0.86 0.86 36.63 2.66
671 711 3.806316 CGTCTCGCATTTAAACCAGTT 57.194 42.857 0.00 0.00 0.00 3.16
685 725 1.421485 GGCACAATTCAGCGTCTCG 59.579 57.895 0.00 0.00 0.00 4.04
686 726 1.421485 CGGCACAATTCAGCGTCTC 59.579 57.895 0.00 0.00 0.00 3.36
687 727 2.680913 GCGGCACAATTCAGCGTCT 61.681 57.895 0.00 0.00 0.00 4.18
688 728 2.202349 GCGGCACAATTCAGCGTC 60.202 61.111 0.00 0.00 0.00 5.19
710 750 6.429385 GGGACAAAAATCAATTGCAAATGGTA 59.571 34.615 14.37 0.00 0.00 3.25
711 751 5.241285 GGGACAAAAATCAATTGCAAATGGT 59.759 36.000 14.37 4.34 0.00 3.55
715 755 4.140536 GGGGGACAAAAATCAATTGCAAA 58.859 39.130 1.71 0.00 0.00 3.68
880 930 4.280425 CGGGAAGTAGGTATAAGGAAGGAC 59.720 50.000 0.00 0.00 0.00 3.85
894 944 2.758737 AGACCGGCCGGGAAGTAG 60.759 66.667 44.99 21.06 39.97 2.57
914 964 1.134367 CGAGGAGTAAGGTTGCGATCA 59.866 52.381 0.00 0.00 0.00 2.92
926 976 2.034532 TCGTGGTGGCGAGGAGTA 59.965 61.111 0.00 0.00 35.83 2.59
927 977 3.681835 GTCGTGGTGGCGAGGAGT 61.682 66.667 0.00 0.00 41.85 3.85
1350 1400 2.948134 GTGCGGCGCGTAGAGTAC 60.948 66.667 28.09 14.05 0.00 2.73
1455 1511 2.049433 AAGTCCGCGTTCTCACCG 60.049 61.111 4.92 0.00 0.00 4.94
1761 1817 4.980805 TCTGTTGCGGTGTCGGGC 62.981 66.667 0.00 0.00 36.79 6.13
1774 1830 0.396435 TTCATCGGCAAGGTGTCTGT 59.604 50.000 0.00 0.00 31.45 3.41
1783 1839 1.593196 GAATCGGGATTCATCGGCAA 58.407 50.000 14.81 0.00 44.89 4.52
1914 1970 3.138798 CTGCTGATGGTGCTGCCC 61.139 66.667 0.00 0.00 36.04 5.36
2049 2105 1.275657 CGTCGCGCTGAACTTGTTT 59.724 52.632 5.56 0.00 0.00 2.83
2051 2107 3.036084 CCGTCGCGCTGAACTTGT 61.036 61.111 5.56 0.00 0.00 3.16
2228 2284 1.663379 ATGACGAGCGGGTTCGATGA 61.663 55.000 11.83 0.00 43.03 2.92
2229 2285 1.209275 GATGACGAGCGGGTTCGATG 61.209 60.000 11.83 0.00 43.03 3.84
2230 2286 1.065928 GATGACGAGCGGGTTCGAT 59.934 57.895 11.83 0.00 43.03 3.59
2231 2287 2.488355 GATGACGAGCGGGTTCGA 59.512 61.111 11.83 0.00 43.03 3.71
2232 2288 2.949678 CGATGACGAGCGGGTTCG 60.950 66.667 3.34 3.34 45.70 3.95
2233 2289 2.488355 TCGATGACGAGCGGGTTC 59.512 61.111 0.00 0.00 43.81 3.62
2242 2298 3.768185 ATCGCCGGGTTCGATGACG 62.768 63.158 13.66 0.49 44.00 4.35
2243 2299 1.949631 GATCGCCGGGTTCGATGAC 60.950 63.158 18.37 3.57 45.44 3.06
2282 2354 4.615223 GCTTGGAGGAATAAAAACGGTGTC 60.615 45.833 0.00 0.00 0.00 3.67
2294 2366 1.106285 GGCGAAATGCTTGGAGGAAT 58.894 50.000 0.00 0.00 45.43 3.01
2302 2375 4.535526 AGGTAAAAATGGCGAAATGCTT 57.464 36.364 0.00 0.00 45.43 3.91
2319 2392 4.121317 CGGTGTACAGTGTTTTCAAGGTA 58.879 43.478 0.00 0.00 0.00 3.08
2320 2393 2.940410 CGGTGTACAGTGTTTTCAAGGT 59.060 45.455 0.00 0.00 0.00 3.50
2347 2428 5.455525 GTCACGGTGAAAAACATTTCTTCTG 59.544 40.000 13.23 4.44 32.39 3.02
2357 2438 5.400703 TGGTAAAAAGTCACGGTGAAAAAC 58.599 37.500 13.23 0.68 0.00 2.43
2421 2503 2.166664 GCTAATTCGTGAGACCTGGTCT 59.833 50.000 28.70 28.70 46.42 3.85
2423 2505 1.899814 TGCTAATTCGTGAGACCTGGT 59.100 47.619 0.00 0.00 41.84 4.00
2424 2506 2.544685 CTGCTAATTCGTGAGACCTGG 58.455 52.381 0.00 0.00 41.84 4.45
2426 2508 2.093973 CACCTGCTAATTCGTGAGACCT 60.094 50.000 0.00 0.00 41.84 3.85
2431 2513 2.094182 GGTCTCACCTGCTAATTCGTGA 60.094 50.000 0.00 0.00 34.73 4.35
2432 2514 2.271800 GGTCTCACCTGCTAATTCGTG 58.728 52.381 0.00 0.00 34.73 4.35
2433 2515 1.207329 GGGTCTCACCTGCTAATTCGT 59.793 52.381 0.00 0.00 38.64 3.85
2434 2516 1.207089 TGGGTCTCACCTGCTAATTCG 59.793 52.381 0.00 0.00 38.64 3.34
2435 2517 3.471680 GATGGGTCTCACCTGCTAATTC 58.528 50.000 0.00 0.00 38.64 2.17
2436 2518 2.173569 GGATGGGTCTCACCTGCTAATT 59.826 50.000 0.00 0.00 38.64 1.40
2437 2519 1.771255 GGATGGGTCTCACCTGCTAAT 59.229 52.381 0.00 0.00 38.64 1.73
2438 2520 1.204146 GGATGGGTCTCACCTGCTAA 58.796 55.000 0.00 0.00 38.64 3.09
2439 2521 0.339859 AGGATGGGTCTCACCTGCTA 59.660 55.000 0.00 0.00 38.64 3.49
2440 2522 1.081833 AGGATGGGTCTCACCTGCT 59.918 57.895 0.00 0.00 38.64 4.24
2441 2523 1.222936 CAGGATGGGTCTCACCTGC 59.777 63.158 7.99 0.00 42.30 4.85
2456 2538 1.136891 TGCTACGTGTCATCCATCAGG 59.863 52.381 0.00 0.00 0.00 3.86
2457 2539 2.584492 TGCTACGTGTCATCCATCAG 57.416 50.000 0.00 0.00 0.00 2.90
2458 2540 3.097877 GATGCTACGTGTCATCCATCA 57.902 47.619 16.38 0.00 34.52 3.07
2463 2545 2.293677 TGTGGATGCTACGTGTCATC 57.706 50.000 18.05 18.05 38.60 2.92
2464 2546 2.760634 TTGTGGATGCTACGTGTCAT 57.239 45.000 0.00 0.47 0.00 3.06
2465 2547 2.535012 TTTGTGGATGCTACGTGTCA 57.465 45.000 0.00 0.00 0.00 3.58
2466 2548 3.000041 TGATTTGTGGATGCTACGTGTC 59.000 45.455 0.00 0.00 0.00 3.67
2468 2550 2.741517 TGTGATTTGTGGATGCTACGTG 59.258 45.455 0.00 0.00 0.00 4.49
2470 2552 4.406069 CTTTGTGATTTGTGGATGCTACG 58.594 43.478 0.00 0.00 0.00 3.51
2471 2553 4.168760 GCTTTGTGATTTGTGGATGCTAC 58.831 43.478 0.00 0.00 0.00 3.58
2472 2554 3.825585 TGCTTTGTGATTTGTGGATGCTA 59.174 39.130 0.00 0.00 0.00 3.49
2473 2555 2.629137 TGCTTTGTGATTTGTGGATGCT 59.371 40.909 0.00 0.00 0.00 3.79
2474 2556 3.029320 TGCTTTGTGATTTGTGGATGC 57.971 42.857 0.00 0.00 0.00 3.91
2475 2557 3.742369 GGTTGCTTTGTGATTTGTGGATG 59.258 43.478 0.00 0.00 0.00 3.51
2476 2558 3.387374 TGGTTGCTTTGTGATTTGTGGAT 59.613 39.130 0.00 0.00 0.00 3.41
2477 2559 2.762887 TGGTTGCTTTGTGATTTGTGGA 59.237 40.909 0.00 0.00 0.00 4.02
2478 2560 2.865551 GTGGTTGCTTTGTGATTTGTGG 59.134 45.455 0.00 0.00 0.00 4.17
2479 2561 3.784338 AGTGGTTGCTTTGTGATTTGTG 58.216 40.909 0.00 0.00 0.00 3.33
2480 2562 3.181476 GGAGTGGTTGCTTTGTGATTTGT 60.181 43.478 0.00 0.00 0.00 2.83
2481 2563 3.181477 TGGAGTGGTTGCTTTGTGATTTG 60.181 43.478 0.00 0.00 0.00 2.32
2482 2564 3.030291 TGGAGTGGTTGCTTTGTGATTT 58.970 40.909 0.00 0.00 0.00 2.17
2483 2565 2.362077 GTGGAGTGGTTGCTTTGTGATT 59.638 45.455 0.00 0.00 0.00 2.57
2484 2566 1.956477 GTGGAGTGGTTGCTTTGTGAT 59.044 47.619 0.00 0.00 0.00 3.06
2485 2567 1.388547 GTGGAGTGGTTGCTTTGTGA 58.611 50.000 0.00 0.00 0.00 3.58
2486 2568 0.385390 GGTGGAGTGGTTGCTTTGTG 59.615 55.000 0.00 0.00 0.00 3.33
2487 2569 0.755327 GGGTGGAGTGGTTGCTTTGT 60.755 55.000 0.00 0.00 0.00 2.83
2488 2570 1.463553 GGGGTGGAGTGGTTGCTTTG 61.464 60.000 0.00 0.00 0.00 2.77
2490 2572 2.520968 GGGGTGGAGTGGTTGCTT 59.479 61.111 0.00 0.00 0.00 3.91
2492 2574 3.897122 TGGGGGTGGAGTGGTTGC 61.897 66.667 0.00 0.00 0.00 4.17
2494 2576 3.182996 GGTGGGGGTGGAGTGGTT 61.183 66.667 0.00 0.00 0.00 3.67
2497 2579 1.715019 TTTCAGGTGGGGGTGGAGTG 61.715 60.000 0.00 0.00 0.00 3.51
2498 2580 0.776080 ATTTCAGGTGGGGGTGGAGT 60.776 55.000 0.00 0.00 0.00 3.85
2499 2581 0.034089 GATTTCAGGTGGGGGTGGAG 60.034 60.000 0.00 0.00 0.00 3.86
2500 2582 0.774096 TGATTTCAGGTGGGGGTGGA 60.774 55.000 0.00 0.00 0.00 4.02
2501 2583 0.323725 CTGATTTCAGGTGGGGGTGG 60.324 60.000 0.00 0.00 40.20 4.61
2502 2584 3.271250 CTGATTTCAGGTGGGGGTG 57.729 57.895 0.00 0.00 40.20 4.61
2522 2604 3.137360 ACAAAGCATCTAATCTCTCCCCC 59.863 47.826 0.00 0.00 0.00 5.40
2524 2606 5.028549 TCACAAAGCATCTAATCTCTCCC 57.971 43.478 0.00 0.00 0.00 4.30
2526 2608 7.909121 CACAAATCACAAAGCATCTAATCTCTC 59.091 37.037 0.00 0.00 0.00 3.20
2527 2609 7.609146 TCACAAATCACAAAGCATCTAATCTCT 59.391 33.333 0.00 0.00 0.00 3.10
2530 2612 8.804743 CATTCACAAATCACAAAGCATCTAATC 58.195 33.333 0.00 0.00 0.00 1.75
2531 2613 7.277098 GCATTCACAAATCACAAAGCATCTAAT 59.723 33.333 0.00 0.00 0.00 1.73
2532 2614 6.587226 GCATTCACAAATCACAAAGCATCTAA 59.413 34.615 0.00 0.00 0.00 2.10
2534 2616 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
2535 2617 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
2536 2618 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
2555 2637 2.371306 CCTGATGAATGACATGTGGCA 58.629 47.619 1.15 0.00 39.56 4.92
2556 2638 1.679680 CCCTGATGAATGACATGTGGC 59.320 52.381 1.15 0.00 39.56 5.01
2558 2640 1.332686 CGCCCTGATGAATGACATGTG 59.667 52.381 1.15 0.00 39.56 3.21
2560 2642 0.949397 CCGCCCTGATGAATGACATG 59.051 55.000 0.00 0.00 39.56 3.21
2561 2643 0.179009 CCCGCCCTGATGAATGACAT 60.179 55.000 0.00 0.00 42.47 3.06
2562 2644 1.224315 CCCGCCCTGATGAATGACA 59.776 57.895 0.00 0.00 0.00 3.58
2563 2645 0.815615 GACCCGCCCTGATGAATGAC 60.816 60.000 0.00 0.00 0.00 3.06
2565 2647 0.533755 GAGACCCGCCCTGATGAATG 60.534 60.000 0.00 0.00 0.00 2.67
2566 2648 0.982852 TGAGACCCGCCCTGATGAAT 60.983 55.000 0.00 0.00 0.00 2.57
2567 2649 1.612146 TGAGACCCGCCCTGATGAA 60.612 57.895 0.00 0.00 0.00 2.57
2568 2650 2.038813 TGAGACCCGCCCTGATGA 59.961 61.111 0.00 0.00 0.00 2.92
2569 2651 2.187946 GTGAGACCCGCCCTGATG 59.812 66.667 0.00 0.00 0.00 3.07
2570 2652 3.083997 GGTGAGACCCGCCCTGAT 61.084 66.667 0.00 0.00 39.55 2.90
2571 2653 4.316823 AGGTGAGACCCGCCCTGA 62.317 66.667 0.00 0.00 46.65 3.86
2572 2654 4.087892 CAGGTGAGACCCGCCCTG 62.088 72.222 0.00 0.00 46.65 4.45
2573 2655 3.625632 ATCAGGTGAGACCCGCCCT 62.626 63.158 0.00 0.00 46.65 5.19
2575 2657 0.539986 TAAATCAGGTGAGACCCGCC 59.460 55.000 0.00 0.00 45.81 6.13
2576 2658 2.622064 ATAAATCAGGTGAGACCCGC 57.378 50.000 0.00 0.00 39.75 6.13
2578 2660 6.672266 TCTCATATAAATCAGGTGAGACCC 57.328 41.667 0.00 0.00 40.06 4.46
2582 2664 5.931146 GCAGGTCTCATATAAATCAGGTGAG 59.069 44.000 0.00 0.00 38.07 3.51
2583 2665 5.509670 CGCAGGTCTCATATAAATCAGGTGA 60.510 44.000 0.00 0.00 0.00 4.02
2584 2666 4.687948 CGCAGGTCTCATATAAATCAGGTG 59.312 45.833 0.00 0.00 0.00 4.00
2585 2667 4.800914 GCGCAGGTCTCATATAAATCAGGT 60.801 45.833 0.30 0.00 0.00 4.00
2589 2671 4.093998 CCATGCGCAGGTCTCATATAAATC 59.906 45.833 21.79 0.00 0.00 2.17
2590 2672 4.005650 CCATGCGCAGGTCTCATATAAAT 58.994 43.478 21.79 0.00 0.00 1.40
2591 2673 3.070878 TCCATGCGCAGGTCTCATATAAA 59.929 43.478 21.79 0.00 0.00 1.40
2592 2674 2.632512 TCCATGCGCAGGTCTCATATAA 59.367 45.455 21.79 0.00 0.00 0.98
2594 2676 1.051008 TCCATGCGCAGGTCTCATAT 58.949 50.000 21.79 0.00 0.00 1.78
2595 2677 1.051008 ATCCATGCGCAGGTCTCATA 58.949 50.000 21.79 3.53 0.00 2.15
2596 2678 0.182061 AATCCATGCGCAGGTCTCAT 59.818 50.000 21.79 4.32 0.00 2.90
2597 2679 0.035152 AAATCCATGCGCAGGTCTCA 60.035 50.000 21.79 1.86 0.00 3.27
2598 2680 1.098050 AAAATCCATGCGCAGGTCTC 58.902 50.000 21.79 0.00 0.00 3.36
2600 2682 0.527565 ACAAAATCCATGCGCAGGTC 59.472 50.000 21.79 0.00 0.00 3.85
2601 2683 0.527565 GACAAAATCCATGCGCAGGT 59.472 50.000 21.79 0.00 0.00 4.00
2699 3032 1.308998 GGGAAATGCTACATGGACGG 58.691 55.000 0.00 0.00 0.00 4.79
2701 3034 2.435372 TGGGGAAATGCTACATGGAC 57.565 50.000 0.00 0.00 0.00 4.02
2702 3035 2.311542 ACTTGGGGAAATGCTACATGGA 59.688 45.455 0.00 0.00 0.00 3.41
2703 3036 2.428171 CACTTGGGGAAATGCTACATGG 59.572 50.000 0.00 0.00 0.00 3.66
2704 3037 3.355378 TCACTTGGGGAAATGCTACATG 58.645 45.455 0.00 0.00 0.00 3.21
2706 3039 3.517296 TTCACTTGGGGAAATGCTACA 57.483 42.857 0.00 0.00 0.00 2.74
2707 3040 3.572255 TGTTTCACTTGGGGAAATGCTAC 59.428 43.478 0.00 0.00 36.71 3.58
2708 3041 3.572255 GTGTTTCACTTGGGGAAATGCTA 59.428 43.478 0.00 0.00 36.71 3.49
2749 5337 2.614057 CCGTGAAGCCCAAATCTATGTC 59.386 50.000 0.00 0.00 0.00 3.06
2750 5338 2.026262 ACCGTGAAGCCCAAATCTATGT 60.026 45.455 0.00 0.00 0.00 2.29
2751 5339 2.355756 CACCGTGAAGCCCAAATCTATG 59.644 50.000 0.00 0.00 0.00 2.23
2752 5340 2.643551 CACCGTGAAGCCCAAATCTAT 58.356 47.619 0.00 0.00 0.00 1.98
2753 5341 1.948611 GCACCGTGAAGCCCAAATCTA 60.949 52.381 1.65 0.00 0.00 1.98
2754 5342 1.244019 GCACCGTGAAGCCCAAATCT 61.244 55.000 1.65 0.00 0.00 2.40
2773 5361 7.306051 CGACATTAAAGATGTCCTTAACGCTAG 60.306 40.741 12.14 0.00 43.98 3.42
2774 5362 6.474427 CGACATTAAAGATGTCCTTAACGCTA 59.526 38.462 12.14 0.00 43.98 4.26
2775 5363 5.291128 CGACATTAAAGATGTCCTTAACGCT 59.709 40.000 12.14 0.00 43.98 5.07
2784 5372 6.291849 CCGTCTTGATCGACATTAAAGATGTC 60.292 42.308 8.68 8.68 43.55 3.06
2785 5373 5.520288 CCGTCTTGATCGACATTAAAGATGT 59.480 40.000 12.08 0.00 33.81 3.06
2794 5382 2.223829 GGATGTCCGTCTTGATCGACAT 60.224 50.000 10.32 10.32 34.56 3.06
2800 5388 2.711542 GTTTGGGATGTCCGTCTTGAT 58.288 47.619 0.00 0.00 38.76 2.57
2801 5389 1.606994 CGTTTGGGATGTCCGTCTTGA 60.607 52.381 0.00 0.00 38.76 3.02
2804 5392 0.037605 GACGTTTGGGATGTCCGTCT 60.038 55.000 0.00 0.00 43.24 4.18
2805 5393 0.037605 AGACGTTTGGGATGTCCGTC 60.038 55.000 0.00 0.00 43.93 4.79
2807 5395 2.596904 ATAGACGTTTGGGATGTCCG 57.403 50.000 0.00 0.00 43.93 4.79
2836 5427 7.713764 TTATCCATTATCACGAACATGTCTG 57.286 36.000 0.00 0.00 0.00 3.51
2837 5428 7.442364 CCTTTATCCATTATCACGAACATGTCT 59.558 37.037 0.00 0.00 0.00 3.41
2861 5453 1.619669 GGGTTGGATGACCTCCCCT 60.620 63.158 0.00 0.00 44.23 4.79
2866 5458 4.047166 TGATGAATAGGGTTGGATGACCT 58.953 43.478 0.00 0.00 39.71 3.85
2869 5461 4.726317 TCCTTGATGAATAGGGTTGGATGA 59.274 41.667 0.00 0.00 32.20 2.92
2891 5488 4.379918 GCTTTCCAAAAGGCTAGATGTGTC 60.380 45.833 0.00 0.00 34.79 3.67
2905 5502 2.825532 GGGCTCACATTAGCTTTCCAAA 59.174 45.455 0.00 0.00 42.37 3.28
2909 5506 3.282021 TGATGGGCTCACATTAGCTTTC 58.718 45.455 0.00 0.00 42.37 2.62
2931 5528 2.733552 GTCGTCTTAGGGTTTTTCGACC 59.266 50.000 0.00 0.00 39.73 4.79
2934 5531 3.645884 TCAGTCGTCTTAGGGTTTTTCG 58.354 45.455 0.00 0.00 0.00 3.46
2935 5532 4.879598 TCTCAGTCGTCTTAGGGTTTTTC 58.120 43.478 0.00 0.00 0.00 2.29
2936 5533 4.262506 CCTCTCAGTCGTCTTAGGGTTTTT 60.263 45.833 0.00 0.00 0.00 1.94
2948 5545 0.109086 CGTGATTGCCTCTCAGTCGT 60.109 55.000 0.00 0.00 34.50 4.34
2952 5549 1.364626 GCCACGTGATTGCCTCTCAG 61.365 60.000 19.30 0.00 0.00 3.35
2967 5564 4.436998 CTCTCACCCGACCGCCAC 62.437 72.222 0.00 0.00 0.00 5.01
2979 5576 2.579201 GTAGCAAGCCGGCTCTCA 59.421 61.111 32.93 12.90 44.54 3.27
2998 5595 1.576421 GACAACCCAGCGCAGAAAG 59.424 57.895 11.47 0.00 0.00 2.62
3004 5601 1.696832 GAAGATCGACAACCCAGCGC 61.697 60.000 0.00 0.00 0.00 5.92
3005 5602 1.084370 GGAAGATCGACAACCCAGCG 61.084 60.000 0.00 0.00 0.00 5.18
3008 5605 1.606994 CGTTGGAAGATCGACAACCCA 60.607 52.381 18.14 2.97 40.92 4.51
3009 5606 1.076332 CGTTGGAAGATCGACAACCC 58.924 55.000 18.14 0.57 40.92 4.11
3012 5609 1.790755 CACCGTTGGAAGATCGACAA 58.209 50.000 0.00 0.00 0.00 3.18
3015 5612 0.034198 TTGCACCGTTGGAAGATCGA 59.966 50.000 0.00 0.00 0.00 3.59
3016 5613 2.539003 TTGCACCGTTGGAAGATCG 58.461 52.632 0.00 0.00 0.00 3.69
3023 5620 1.654220 CAAGTCCTTGCACCGTTGG 59.346 57.895 0.00 0.00 33.45 3.77
3049 5646 2.357517 AAGTCGTGCAAGCTCGGG 60.358 61.111 15.24 0.00 34.27 5.14
3051 5648 2.856032 CCAAGTCGTGCAAGCTCG 59.144 61.111 9.94 9.94 0.00 5.03
3052 5649 2.558313 GCCAAGTCGTGCAAGCTC 59.442 61.111 0.00 0.00 0.00 4.09
3053 5650 3.349006 CGCCAAGTCGTGCAAGCT 61.349 61.111 0.00 0.00 0.00 3.74
3054 5651 1.837538 TAACGCCAAGTCGTGCAAGC 61.838 55.000 0.00 0.00 42.46 4.01
3055 5652 0.163788 CTAACGCCAAGTCGTGCAAG 59.836 55.000 0.00 0.00 42.46 4.01
3056 5653 0.249531 TCTAACGCCAAGTCGTGCAA 60.250 50.000 0.00 0.00 42.46 4.08
3058 5655 0.388134 TCTCTAACGCCAAGTCGTGC 60.388 55.000 0.00 0.00 42.46 5.34
3059 5656 2.159366 AGATCTCTAACGCCAAGTCGTG 60.159 50.000 0.00 0.00 42.46 4.35
3060 5657 2.093106 AGATCTCTAACGCCAAGTCGT 58.907 47.619 0.00 0.00 45.58 4.34
3061 5658 2.541999 GGAGATCTCTAACGCCAAGTCG 60.542 54.545 21.81 0.00 0.00 4.18
3062 5659 2.691011 AGGAGATCTCTAACGCCAAGTC 59.309 50.000 21.81 1.18 0.00 3.01
3063 5660 2.428890 CAGGAGATCTCTAACGCCAAGT 59.571 50.000 21.81 0.00 0.00 3.16
3064 5661 2.428890 ACAGGAGATCTCTAACGCCAAG 59.571 50.000 21.81 5.02 0.00 3.61
3087 5685 4.833811 TCGCCATTGGAGACATCG 57.166 55.556 6.95 0.00 42.32 3.84
3124 5723 0.370273 GAGTGTATTCGCAGGCGTTG 59.630 55.000 13.83 0.00 40.74 4.10
3125 5724 0.037697 TGAGTGTATTCGCAGGCGTT 60.038 50.000 13.83 5.44 40.74 4.84
3126 5725 0.736325 GTGAGTGTATTCGCAGGCGT 60.736 55.000 13.83 0.00 40.74 5.68
3127 5726 0.458543 AGTGAGTGTATTCGCAGGCG 60.459 55.000 7.46 7.46 41.35 5.52
3128 5727 2.159226 ACTAGTGAGTGTATTCGCAGGC 60.159 50.000 0.00 0.00 33.41 4.85
3129 5728 3.784701 ACTAGTGAGTGTATTCGCAGG 57.215 47.619 0.00 0.00 33.41 4.85
3130 5729 5.736486 TCTACTAGTGAGTGTATTCGCAG 57.264 43.478 5.39 0.00 36.28 5.18
3131 5730 6.505044 TTTCTACTAGTGAGTGTATTCGCA 57.495 37.500 5.39 0.00 36.28 5.10
3132 5731 6.805271 TGTTTTCTACTAGTGAGTGTATTCGC 59.195 38.462 5.39 0.00 36.28 4.70
3133 5732 7.485277 CCTGTTTTCTACTAGTGAGTGTATTCG 59.515 40.741 5.39 0.00 36.28 3.34
3134 5733 7.760340 CCCTGTTTTCTACTAGTGAGTGTATTC 59.240 40.741 5.39 0.00 36.28 1.75
3135 5734 7.612677 CCCTGTTTTCTACTAGTGAGTGTATT 58.387 38.462 5.39 0.00 36.28 1.89
3136 5735 6.351117 GCCCTGTTTTCTACTAGTGAGTGTAT 60.351 42.308 5.39 0.00 36.28 2.29
3137 5736 5.047519 GCCCTGTTTTCTACTAGTGAGTGTA 60.048 44.000 5.39 0.00 36.28 2.90
3138 5737 4.262506 GCCCTGTTTTCTACTAGTGAGTGT 60.263 45.833 5.39 0.00 36.28 3.55
3139 5738 4.021016 AGCCCTGTTTTCTACTAGTGAGTG 60.021 45.833 5.39 0.00 36.28 3.51
3140 5739 4.161102 AGCCCTGTTTTCTACTAGTGAGT 58.839 43.478 5.39 0.00 39.92 3.41
3141 5740 4.810191 AGCCCTGTTTTCTACTAGTGAG 57.190 45.455 5.39 0.00 0.00 3.51
3142 5741 5.548406 GAAAGCCCTGTTTTCTACTAGTGA 58.452 41.667 5.39 0.00 31.69 3.41
3143 5742 4.389077 CGAAAGCCCTGTTTTCTACTAGTG 59.611 45.833 5.39 0.00 32.09 2.74
3144 5743 4.040095 ACGAAAGCCCTGTTTTCTACTAGT 59.960 41.667 0.00 0.00 32.09 2.57
3145 5744 4.566987 ACGAAAGCCCTGTTTTCTACTAG 58.433 43.478 0.00 0.00 32.09 2.57
3146 5745 4.562143 GGACGAAAGCCCTGTTTTCTACTA 60.562 45.833 0.00 0.00 32.09 1.82
3147 5746 3.400255 GACGAAAGCCCTGTTTTCTACT 58.600 45.455 0.00 0.00 32.09 2.57
3148 5747 2.483106 GGACGAAAGCCCTGTTTTCTAC 59.517 50.000 0.00 0.00 32.09 2.59
3149 5748 2.105134 TGGACGAAAGCCCTGTTTTCTA 59.895 45.455 0.00 0.00 33.21 2.10
3150 5749 1.133915 TGGACGAAAGCCCTGTTTTCT 60.134 47.619 0.00 0.00 33.21 2.52
3151 5750 1.266989 CTGGACGAAAGCCCTGTTTTC 59.733 52.381 0.00 0.00 33.21 2.29
3152 5751 1.318576 CTGGACGAAAGCCCTGTTTT 58.681 50.000 0.00 0.00 33.21 2.43
3153 5752 0.537371 CCTGGACGAAAGCCCTGTTT 60.537 55.000 0.00 0.00 33.21 2.83
3154 5753 1.073199 CCTGGACGAAAGCCCTGTT 59.927 57.895 0.00 0.00 33.21 3.16
3155 5754 2.750350 CCTGGACGAAAGCCCTGT 59.250 61.111 0.00 0.00 33.21 4.00
3156 5755 2.747855 GCCTGGACGAAAGCCCTG 60.748 66.667 0.00 0.00 33.21 4.45
3157 5756 4.035102 GGCCTGGACGAAAGCCCT 62.035 66.667 0.00 0.00 39.60 5.19
3158 5757 4.344865 TGGCCTGGACGAAAGCCC 62.345 66.667 3.32 0.00 45.14 5.19
3159 5758 2.747855 CTGGCCTGGACGAAAGCC 60.748 66.667 3.32 0.00 45.96 4.35
3160 5759 1.172812 AAACTGGCCTGGACGAAAGC 61.173 55.000 14.82 0.00 0.00 3.51
3161 5760 2.076863 CTAAACTGGCCTGGACGAAAG 58.923 52.381 14.82 0.00 0.00 2.62
3162 5761 1.880646 GCTAAACTGGCCTGGACGAAA 60.881 52.381 14.82 0.00 0.00 3.46
3163 5762 0.321298 GCTAAACTGGCCTGGACGAA 60.321 55.000 14.82 0.00 0.00 3.85
3164 5763 1.295423 GCTAAACTGGCCTGGACGA 59.705 57.895 14.82 0.00 0.00 4.20
3165 5764 1.745489 GGCTAAACTGGCCTGGACG 60.745 63.158 14.82 0.00 45.57 4.79
3166 5765 4.320910 GGCTAAACTGGCCTGGAC 57.679 61.111 14.82 0.00 45.57 4.02
3172 5771 2.298610 GGACTAATGGGCTAAACTGGC 58.701 52.381 0.00 0.00 0.00 4.85
3173 5772 2.745152 CGGGACTAATGGGCTAAACTGG 60.745 54.545 0.00 0.00 0.00 4.00
3174 5773 2.561569 CGGGACTAATGGGCTAAACTG 58.438 52.381 0.00 0.00 0.00 3.16
3175 5774 1.489230 CCGGGACTAATGGGCTAAACT 59.511 52.381 0.00 0.00 0.00 2.66
3176 5775 1.211212 ACCGGGACTAATGGGCTAAAC 59.789 52.381 6.32 0.00 0.00 2.01
3177 5776 1.587066 ACCGGGACTAATGGGCTAAA 58.413 50.000 6.32 0.00 0.00 1.85
3178 5777 1.487558 GAACCGGGACTAATGGGCTAA 59.512 52.381 6.32 0.00 0.00 3.09
3179 5778 1.125633 GAACCGGGACTAATGGGCTA 58.874 55.000 6.32 0.00 0.00 3.93
3180 5779 0.912487 TGAACCGGGACTAATGGGCT 60.912 55.000 6.32 0.00 0.00 5.19
3181 5780 0.034863 TTGAACCGGGACTAATGGGC 60.035 55.000 6.32 0.00 0.00 5.36
3182 5781 2.572290 GATTGAACCGGGACTAATGGG 58.428 52.381 6.32 0.00 0.00 4.00
3183 5782 2.092646 TGGATTGAACCGGGACTAATGG 60.093 50.000 6.32 0.00 0.00 3.16
3184 5783 3.118408 TCTGGATTGAACCGGGACTAATG 60.118 47.826 6.32 0.00 36.97 1.90
3185 5784 3.112263 TCTGGATTGAACCGGGACTAAT 58.888 45.455 6.32 0.27 36.97 1.73
3186 5785 2.542550 TCTGGATTGAACCGGGACTAA 58.457 47.619 6.32 0.00 36.97 2.24
3187 5786 2.235402 GTTCTGGATTGAACCGGGACTA 59.765 50.000 6.32 0.00 40.62 2.59
3188 5787 1.003233 GTTCTGGATTGAACCGGGACT 59.997 52.381 6.32 0.00 40.62 3.85
3189 5788 1.450025 GTTCTGGATTGAACCGGGAC 58.550 55.000 6.32 0.00 40.10 4.46
3190 5789 3.948735 GTTCTGGATTGAACCGGGA 57.051 52.632 6.32 0.00 40.10 5.14
3195 5794 1.450025 GTCCCGGTTCTGGATTGAAC 58.550 55.000 0.00 0.00 43.88 3.18
3196 5795 0.326927 GGTCCCGGTTCTGGATTGAA 59.673 55.000 0.00 0.00 33.65 2.69
3197 5796 0.838554 TGGTCCCGGTTCTGGATTGA 60.839 55.000 0.00 0.00 33.65 2.57
3198 5797 0.037590 TTGGTCCCGGTTCTGGATTG 59.962 55.000 0.00 0.00 33.65 2.67
3199 5798 0.999712 ATTGGTCCCGGTTCTGGATT 59.000 50.000 0.00 0.00 33.65 3.01
3200 5799 0.255890 CATTGGTCCCGGTTCTGGAT 59.744 55.000 0.00 0.00 33.65 3.41
3201 5800 1.682849 CATTGGTCCCGGTTCTGGA 59.317 57.895 0.00 0.00 0.00 3.86
3202 5801 1.378514 CCATTGGTCCCGGTTCTGG 60.379 63.158 0.00 0.00 0.00 3.86
3203 5802 0.392998 CTCCATTGGTCCCGGTTCTG 60.393 60.000 0.00 0.00 0.00 3.02
3204 5803 1.991230 CTCCATTGGTCCCGGTTCT 59.009 57.895 0.00 0.00 0.00 3.01
3205 5804 1.749258 GCTCCATTGGTCCCGGTTC 60.749 63.158 0.00 0.00 0.00 3.62
3206 5805 2.355115 GCTCCATTGGTCCCGGTT 59.645 61.111 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.