Multiple sequence alignment - TraesCS6B01G342600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G342600 chr6B 100.000 5083 0 0 1 5083 603148998 603143916 0.000000e+00 9387
1 TraesCS6B01G342600 chr6B 85.596 361 50 1 1110 1470 151372525 151372883 1.340000e-100 377
2 TraesCS6B01G342600 chr6B 87.736 212 23 2 2114 2322 151373017 151373228 1.410000e-60 244
3 TraesCS6B01G342600 chr6B 93.056 144 4 6 1547 1687 603147312 603147452 6.670000e-49 206
4 TraesCS6B01G342600 chr6B 84.564 149 12 6 1546 1684 488550194 488550341 2.470000e-28 137
5 TraesCS6B01G342600 chr6D 92.111 2662 104 52 2471 5083 402351997 402349393 0.000000e+00 3655
6 TraesCS6B01G342600 chr6D 89.556 1350 70 27 229 1525 402354195 402352864 0.000000e+00 1646
7 TraesCS6B01G342600 chr6D 88.270 844 35 31 1686 2481 402352841 402352014 0.000000e+00 952
8 TraesCS6B01G342600 chr6D 85.596 361 50 1 1110 1470 78752726 78753084 1.340000e-100 377
9 TraesCS6B01G342600 chr6D 93.274 223 13 2 4 225 404937377 404937156 1.360000e-85 327
10 TraesCS6B01G342600 chr6D 86.321 212 26 2 2114 2322 78753199 78753410 1.420000e-55 228
11 TraesCS6B01G342600 chr6A 88.289 2741 139 72 1686 4321 549045112 549042449 0.000000e+00 3116
12 TraesCS6B01G342600 chr6A 86.567 1340 94 45 223 1543 549046381 549045109 0.000000e+00 1399
13 TraesCS6B01G342600 chr6A 93.493 292 18 1 4793 5083 549042049 549041758 2.810000e-117 433
14 TraesCS6B01G342600 chr6A 87.536 345 43 0 1126 1470 94226999 94227343 2.850000e-107 399
15 TraesCS6B01G342600 chr6A 87.736 212 23 2 2114 2322 94227468 94227679 1.410000e-60 244
16 TraesCS6B01G342600 chr7D 84.065 615 80 11 3445 4047 159738424 159739032 1.230000e-160 577
17 TraesCS6B01G342600 chr7D 85.088 342 47 4 1131 1470 93033803 93033464 3.770000e-91 346
18 TraesCS6B01G342600 chr7D 89.020 255 28 0 3048 3302 159738124 159738378 2.950000e-82 316
19 TraesCS6B01G342600 chr7D 92.958 213 13 2 12 223 492988538 492988749 4.940000e-80 309
20 TraesCS6B01G342600 chr7D 91.748 206 17 0 2115 2320 159737274 159737479 2.320000e-73 287
21 TraesCS6B01G342600 chr7D 89.764 127 13 0 1125 1251 159736342 159736468 4.070000e-36 163
22 TraesCS6B01G342600 chr7D 87.586 145 11 6 1546 1687 613708200 613708060 1.460000e-35 161
23 TraesCS6B01G342600 chr7D 87.500 144 11 2 1547 1687 613708060 613708199 5.270000e-35 159
24 TraesCS6B01G342600 chr7A 83.660 612 82 11 3445 4044 158397038 158397643 1.240000e-155 560
25 TraesCS6B01G342600 chr7A 88.031 259 30 1 3044 3302 158396735 158396992 6.390000e-79 305
26 TraesCS6B01G342600 chr7A 91.748 206 17 0 2115 2320 158395916 158396121 2.320000e-73 287
27 TraesCS6B01G342600 chr7A 74.367 632 131 27 3399 4019 96050703 96050092 1.830000e-59 241
28 TraesCS6B01G342600 chr7B 83.582 603 84 9 3445 4038 120588782 120589378 7.440000e-153 551
29 TraesCS6B01G342600 chr7B 89.804 255 26 0 3048 3302 120588482 120588736 1.360000e-85 327
30 TraesCS6B01G342600 chr7B 90.777 206 19 0 2115 2320 120587634 120587839 5.010000e-70 276
31 TraesCS6B01G342600 chr7B 84.211 266 40 2 3050 3314 45641346 45641082 1.820000e-64 257
32 TraesCS6B01G342600 chr7B 84.190 253 40 0 3050 3302 45848789 45849041 3.930000e-61 246
33 TraesCS6B01G342600 chr7B 73.810 630 138 24 3399 4019 45640908 45640297 1.840000e-54 224
34 TraesCS6B01G342600 chr7B 73.625 618 136 24 3399 4007 45849227 45849826 3.990000e-51 213
35 TraesCS6B01G342600 chr7B 88.667 150 11 3 1547 1693 714509824 714509678 1.450000e-40 178
36 TraesCS6B01G342600 chr7B 91.339 127 11 0 1125 1251 120586721 120586847 1.880000e-39 174
37 TraesCS6B01G342600 chr7B 88.112 143 13 4 1547 1687 714509684 714509824 3.150000e-37 167
38 TraesCS6B01G342600 chr5A 87.536 345 39 4 1131 1473 410203609 410203267 3.690000e-106 396
39 TraesCS6B01G342600 chr5A 85.870 276 37 2 3037 3311 410202824 410202550 4.980000e-75 292
40 TraesCS6B01G342600 chr5D 85.795 352 45 5 1131 1479 315485497 315485148 8.040000e-98 368
41 TraesCS6B01G342600 chr5D 91.071 224 19 1 4 226 387710464 387710241 8.270000e-78 302
42 TraesCS6B01G342600 chr5D 85.145 276 39 2 3037 3311 315484710 315484436 1.080000e-71 281
43 TraesCS6B01G342600 chr5D 85.577 208 30 0 2115 2322 315484973 315484766 8.570000e-53 219
44 TraesCS6B01G342600 chr5B 85.632 348 44 6 1135 1479 363669765 363669421 1.350000e-95 361
45 TraesCS6B01G342600 chr5B 90.708 226 18 2 1 223 420790836 420791061 1.070000e-76 298
46 TraesCS6B01G342600 chr5B 85.577 208 30 0 2115 2322 363669246 363669039 8.570000e-53 219
47 TraesCS6B01G342600 chr5B 86.014 143 10 8 1547 1687 710812110 710812244 1.470000e-30 145
48 TraesCS6B01G342600 chr5B 86.014 143 10 10 1547 1687 710812244 710812110 1.470000e-30 145
49 TraesCS6B01G342600 chr4A 93.213 221 13 2 4 223 41647943 41647724 1.770000e-84 324
50 TraesCS6B01G342600 chr2D 92.478 226 13 3 1 225 360326762 360326984 2.280000e-83 320
51 TraesCS6B01G342600 chr3D 92.760 221 14 2 4 223 399770421 399770202 8.210000e-83 318
52 TraesCS6B01G342600 chr3A 92.488 213 14 2 12 223 379909025 379909236 2.300000e-78 303
53 TraesCS6B01G342600 chr3A 92.453 212 14 2 12 222 379944003 379944213 8.270000e-78 302
54 TraesCS6B01G342600 chrUn 73.776 633 133 28 3399 4019 82677692 82678303 8.570000e-53 219
55 TraesCS6B01G342600 chr2B 86.525 141 12 2 1547 1687 90006537 90006670 1.140000e-31 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G342600 chr6B 603143916 603148998 5082 True 9387.000000 9387 100.000000 1 5083 1 chr6B.!!$R1 5082
1 TraesCS6B01G342600 chr6B 151372525 151373228 703 False 310.500000 377 86.666000 1110 2322 2 chr6B.!!$F3 1212
2 TraesCS6B01G342600 chr6D 402349393 402354195 4802 True 2084.333333 3655 89.979000 229 5083 3 chr6D.!!$R2 4854
3 TraesCS6B01G342600 chr6D 78752726 78753410 684 False 302.500000 377 85.958500 1110 2322 2 chr6D.!!$F1 1212
4 TraesCS6B01G342600 chr6A 549041758 549046381 4623 True 1649.333333 3116 89.449667 223 5083 3 chr6A.!!$R1 4860
5 TraesCS6B01G342600 chr6A 94226999 94227679 680 False 321.500000 399 87.636000 1126 2322 2 chr6A.!!$F1 1196
6 TraesCS6B01G342600 chr7D 159736342 159739032 2690 False 335.750000 577 88.649250 1125 4047 4 chr7D.!!$F3 2922
7 TraesCS6B01G342600 chr7A 158395916 158397643 1727 False 384.000000 560 87.813000 2115 4044 3 chr7A.!!$F1 1929
8 TraesCS6B01G342600 chr7A 96050092 96050703 611 True 241.000000 241 74.367000 3399 4019 1 chr7A.!!$R1 620
9 TraesCS6B01G342600 chr7B 120586721 120589378 2657 False 332.000000 551 88.875500 1125 4038 4 chr7B.!!$F3 2913
10 TraesCS6B01G342600 chr7B 45640297 45641346 1049 True 240.500000 257 79.010500 3050 4019 2 chr7B.!!$R2 969
11 TraesCS6B01G342600 chr7B 45848789 45849826 1037 False 229.500000 246 78.907500 3050 4007 2 chr7B.!!$F2 957
12 TraesCS6B01G342600 chr5A 410202550 410203609 1059 True 344.000000 396 86.703000 1131 3311 2 chr5A.!!$R1 2180
13 TraesCS6B01G342600 chr5D 315484436 315485497 1061 True 289.333333 368 85.505667 1131 3311 3 chr5D.!!$R2 2180
14 TraesCS6B01G342600 chr5B 363669039 363669765 726 True 290.000000 361 85.604500 1135 2322 2 chr5B.!!$R2 1187
15 TraesCS6B01G342600 chrUn 82677692 82678303 611 False 219.000000 219 73.776000 3399 4019 1 chrUn.!!$F1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.0 0.2 0.0 40.79 3.09 F
1041 1100 0.179145 CCGTAATCTTGTCTCGCCGT 60.179 55.0 0.0 0.0 0.00 5.68 F
2631 3279 0.243907 TTTCTCTTCTGTCGGCTCGG 59.756 55.0 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1728 0.107456 GATGGATGGAGGTGACGCAT 59.893 55.0 0.0 0.00 0.0 4.73 R
2849 3515 0.108138 AAAGCAGCAGGTAGGTAGCG 60.108 55.0 0.0 0.00 0.0 4.26 R
4111 5063 1.191535 GGGAAAATTGTACAGCCCCC 58.808 55.0 0.0 0.62 0.0 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.783833 ATACAGCTTATCTTATAGCCAACATG 57.216 34.615 0.00 0.00 38.14 3.21
28 29 6.595682 ACAGCTTATCTTATAGCCAACATGT 58.404 36.000 0.00 0.00 38.14 3.21
29 30 7.735917 ACAGCTTATCTTATAGCCAACATGTA 58.264 34.615 0.00 0.00 38.14 2.29
30 31 7.657761 ACAGCTTATCTTATAGCCAACATGTAC 59.342 37.037 0.00 0.00 38.14 2.90
31 32 7.657354 CAGCTTATCTTATAGCCAACATGTACA 59.343 37.037 0.00 0.00 38.14 2.90
32 33 8.210946 AGCTTATCTTATAGCCAACATGTACAA 58.789 33.333 0.00 0.00 38.14 2.41
33 34 9.003658 GCTTATCTTATAGCCAACATGTACAAT 57.996 33.333 0.00 0.00 0.00 2.71
86 87 9.699410 TTTATTATGTGACCCATCTTTCATTCT 57.301 29.630 0.00 0.00 34.86 2.40
87 88 7.814264 ATTATGTGACCCATCTTTCATTCTC 57.186 36.000 0.00 0.00 34.86 2.87
88 89 4.639078 TGTGACCCATCTTTCATTCTCA 57.361 40.909 0.00 0.00 0.00 3.27
89 90 4.326826 TGTGACCCATCTTTCATTCTCAC 58.673 43.478 0.00 0.00 0.00 3.51
90 91 4.202451 TGTGACCCATCTTTCATTCTCACA 60.202 41.667 0.00 0.00 35.56 3.58
91 92 4.761739 GTGACCCATCTTTCATTCTCACAA 59.238 41.667 0.00 0.00 0.00 3.33
92 93 5.241506 GTGACCCATCTTTCATTCTCACAAA 59.758 40.000 0.00 0.00 0.00 2.83
93 94 5.474532 TGACCCATCTTTCATTCTCACAAAG 59.525 40.000 0.00 0.00 0.00 2.77
94 95 5.388654 ACCCATCTTTCATTCTCACAAAGT 58.611 37.500 0.00 0.00 0.00 2.66
95 96 5.242393 ACCCATCTTTCATTCTCACAAAGTG 59.758 40.000 0.00 0.00 34.45 3.16
96 97 5.159209 CCATCTTTCATTCTCACAAAGTGC 58.841 41.667 0.00 0.00 32.98 4.40
97 98 4.836125 TCTTTCATTCTCACAAAGTGCC 57.164 40.909 0.00 0.00 32.98 5.01
98 99 4.464008 TCTTTCATTCTCACAAAGTGCCT 58.536 39.130 0.00 0.00 32.98 4.75
99 100 5.620206 TCTTTCATTCTCACAAAGTGCCTA 58.380 37.500 0.00 0.00 32.98 3.93
100 101 6.061441 TCTTTCATTCTCACAAAGTGCCTAA 58.939 36.000 0.00 0.00 32.98 2.69
101 102 5.947228 TTCATTCTCACAAAGTGCCTAAG 57.053 39.130 0.00 0.00 32.98 2.18
102 103 5.227569 TCATTCTCACAAAGTGCCTAAGA 57.772 39.130 0.00 0.00 32.98 2.10
103 104 5.240891 TCATTCTCACAAAGTGCCTAAGAG 58.759 41.667 0.00 0.00 32.98 2.85
104 105 3.045601 TCTCACAAAGTGCCTAAGAGC 57.954 47.619 0.00 0.00 32.98 4.09
105 106 2.368548 TCTCACAAAGTGCCTAAGAGCA 59.631 45.455 0.00 0.00 41.46 4.26
120 121 3.773974 GCACGTGCTAGAGCTGAC 58.226 61.111 32.55 0.00 42.66 3.51
121 122 1.214062 GCACGTGCTAGAGCTGACT 59.786 57.895 32.55 0.00 42.66 3.41
122 123 0.800300 GCACGTGCTAGAGCTGACTC 60.800 60.000 32.55 0.00 42.66 3.36
132 133 2.999507 GAGCTGACTCTTCACGAAGA 57.000 50.000 9.08 9.08 44.47 2.87
138 139 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
139 140 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
140 141 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
141 142 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
142 143 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
143 144 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
144 145 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
145 146 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
146 147 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
147 148 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
148 149 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
149 150 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
150 151 0.537653 GAGCCCGCTTACCTTCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
151 152 0.984995 AGCCCGCTTACCTTCTCTTT 59.015 50.000 0.00 0.00 0.00 2.52
152 153 1.066071 AGCCCGCTTACCTTCTCTTTC 60.066 52.381 0.00 0.00 0.00 2.62
153 154 2.012554 GCCCGCTTACCTTCTCTTTCC 61.013 57.143 0.00 0.00 0.00 3.13
154 155 1.555533 CCCGCTTACCTTCTCTTTCCT 59.444 52.381 0.00 0.00 0.00 3.36
155 156 2.418884 CCCGCTTACCTTCTCTTTCCTC 60.419 54.545 0.00 0.00 0.00 3.71
156 157 2.418884 CCGCTTACCTTCTCTTTCCTCC 60.419 54.545 0.00 0.00 0.00 4.30
157 158 2.233922 CGCTTACCTTCTCTTTCCTCCA 59.766 50.000 0.00 0.00 0.00 3.86
158 159 3.306780 CGCTTACCTTCTCTTTCCTCCAA 60.307 47.826 0.00 0.00 0.00 3.53
159 160 4.004314 GCTTACCTTCTCTTTCCTCCAAC 58.996 47.826 0.00 0.00 0.00 3.77
160 161 4.263112 GCTTACCTTCTCTTTCCTCCAACT 60.263 45.833 0.00 0.00 0.00 3.16
161 162 5.046520 GCTTACCTTCTCTTTCCTCCAACTA 60.047 44.000 0.00 0.00 0.00 2.24
162 163 6.520231 GCTTACCTTCTCTTTCCTCCAACTAA 60.520 42.308 0.00 0.00 0.00 2.24
163 164 5.491323 ACCTTCTCTTTCCTCCAACTAAG 57.509 43.478 0.00 0.00 0.00 2.18
164 165 4.257731 CCTTCTCTTTCCTCCAACTAAGC 58.742 47.826 0.00 0.00 0.00 3.09
165 166 4.263068 CCTTCTCTTTCCTCCAACTAAGCA 60.263 45.833 0.00 0.00 0.00 3.91
166 167 4.543590 TCTCTTTCCTCCAACTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
167 168 4.160329 TCTCTTTCCTCCAACTAAGCAGA 58.840 43.478 0.00 0.00 0.00 4.26
168 169 4.593206 TCTCTTTCCTCCAACTAAGCAGAA 59.407 41.667 0.00 0.00 0.00 3.02
169 170 5.071788 TCTCTTTCCTCCAACTAAGCAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
170 171 5.880901 TCTTTCCTCCAACTAAGCAGAAAT 58.119 37.500 0.00 0.00 0.00 2.17
171 172 7.016153 TCTTTCCTCCAACTAAGCAGAAATA 57.984 36.000 0.00 0.00 0.00 1.40
172 173 7.633789 TCTTTCCTCCAACTAAGCAGAAATAT 58.366 34.615 0.00 0.00 0.00 1.28
173 174 8.768397 TCTTTCCTCCAACTAAGCAGAAATATA 58.232 33.333 0.00 0.00 0.00 0.86
174 175 8.732746 TTTCCTCCAACTAAGCAGAAATATAC 57.267 34.615 0.00 0.00 0.00 1.47
175 176 7.676683 TCCTCCAACTAAGCAGAAATATACT 57.323 36.000 0.00 0.00 0.00 2.12
176 177 8.777578 TCCTCCAACTAAGCAGAAATATACTA 57.222 34.615 0.00 0.00 0.00 1.82
177 178 8.861086 TCCTCCAACTAAGCAGAAATATACTAG 58.139 37.037 0.00 0.00 0.00 2.57
178 179 8.643324 CCTCCAACTAAGCAGAAATATACTAGT 58.357 37.037 0.00 0.00 0.00 2.57
202 203 1.944032 TTTTTATAGCCCGCCGACTC 58.056 50.000 0.00 0.00 0.00 3.36
203 204 0.249155 TTTTATAGCCCGCCGACTCG 60.249 55.000 0.00 0.00 0.00 4.18
215 216 2.402640 CCGACTCGGCTCTATTGTAC 57.597 55.000 4.10 0.00 41.17 2.90
216 217 1.948145 CCGACTCGGCTCTATTGTACT 59.052 52.381 4.10 0.00 41.17 2.73
217 218 2.358267 CCGACTCGGCTCTATTGTACTT 59.642 50.000 4.10 0.00 41.17 2.24
218 219 3.364062 CGACTCGGCTCTATTGTACTTG 58.636 50.000 0.00 0.00 0.00 3.16
219 220 3.117046 GACTCGGCTCTATTGTACTTGC 58.883 50.000 0.00 0.00 0.00 4.01
220 221 2.761208 ACTCGGCTCTATTGTACTTGCT 59.239 45.455 0.00 0.00 0.00 3.91
221 222 3.181485 ACTCGGCTCTATTGTACTTGCTC 60.181 47.826 0.00 0.00 0.00 4.26
225 226 4.740695 CGGCTCTATTGTACTTGCTCTTAC 59.259 45.833 0.00 0.00 0.00 2.34
273 275 0.378610 GCCTGCTAAGATTTCACGGC 59.621 55.000 0.00 0.00 0.00 5.68
423 425 1.000233 CCAACCGACTCACGTGTACG 61.000 60.000 16.51 17.79 46.33 3.67
434 436 2.803670 GTGTACGCGCGCTCTGAA 60.804 61.111 32.58 6.94 0.00 3.02
435 437 2.049894 TGTACGCGCGCTCTGAAA 60.050 55.556 32.58 5.70 0.00 2.69
436 438 1.662133 TGTACGCGCGCTCTGAAAA 60.662 52.632 32.58 3.88 0.00 2.29
437 439 1.057361 GTACGCGCGCTCTGAAAAG 59.943 57.895 32.58 13.34 0.00 2.27
438 440 2.726691 TACGCGCGCTCTGAAAAGC 61.727 57.895 32.58 0.00 38.97 3.51
439 441 4.801221 CGCGCGCTCTGAAAAGCC 62.801 66.667 30.48 0.00 39.17 4.35
440 442 4.467062 GCGCGCTCTGAAAAGCCC 62.467 66.667 26.67 0.00 39.17 5.19
441 443 3.804193 CGCGCTCTGAAAAGCCCC 61.804 66.667 5.56 0.00 39.17 5.80
442 444 3.804193 GCGCTCTGAAAAGCCCCG 61.804 66.667 0.00 0.00 39.17 5.73
443 445 3.127533 CGCTCTGAAAAGCCCCGG 61.128 66.667 0.00 0.00 39.17 5.73
444 446 3.443925 GCTCTGAAAAGCCCCGGC 61.444 66.667 0.00 0.00 42.33 6.13
445 447 2.751837 CTCTGAAAAGCCCCGGCC 60.752 66.667 1.02 0.00 43.17 6.13
446 448 4.715523 TCTGAAAAGCCCCGGCCG 62.716 66.667 21.04 21.04 43.17 6.13
458 460 4.918129 CGGCCGCGCTACACGTAT 62.918 66.667 14.67 0.00 46.11 3.06
459 461 2.332514 GGCCGCGCTACACGTATA 59.667 61.111 5.56 0.00 46.11 1.47
460 462 2.012948 GGCCGCGCTACACGTATAC 61.013 63.158 5.56 0.00 46.11 1.47
461 463 2.352333 GCCGCGCTACACGTATACG 61.352 63.158 23.24 23.24 46.11 3.06
529 547 2.046292 CAAAACCCAACCCAACCATCT 58.954 47.619 0.00 0.00 0.00 2.90
530 548 1.715785 AAACCCAACCCAACCATCTG 58.284 50.000 0.00 0.00 0.00 2.90
531 549 0.560688 AACCCAACCCAACCATCTGT 59.439 50.000 0.00 0.00 0.00 3.41
532 550 0.560688 ACCCAACCCAACCATCTGTT 59.439 50.000 0.00 0.00 37.80 3.16
541 559 3.445096 CCCAACCATCTGTTTCAATCTCC 59.555 47.826 0.00 0.00 34.00 3.71
543 561 3.372440 ACCATCTGTTTCAATCTCCCC 57.628 47.619 0.00 0.00 0.00 4.81
544 562 2.922283 ACCATCTGTTTCAATCTCCCCT 59.078 45.455 0.00 0.00 0.00 4.79
545 563 3.285484 CCATCTGTTTCAATCTCCCCTG 58.715 50.000 0.00 0.00 0.00 4.45
658 692 4.173924 GCCTGCCTGCTCCTCTCC 62.174 72.222 0.00 0.00 0.00 3.71
670 704 3.081804 GCTCCTCTCCTGCTATCTACTC 58.918 54.545 0.00 0.00 0.00 2.59
700 734 2.148768 GAGTTTTATATTCCCCCGGCG 58.851 52.381 0.00 0.00 0.00 6.46
783 817 1.781555 CGAATATAAGCGCGCCAGG 59.218 57.895 30.33 4.71 0.00 4.45
835 874 4.544047 TGCTCGCCACACAGCACA 62.544 61.111 0.00 0.00 40.80 4.57
890 939 3.914605 CTACGCTCGCACACAGGCA 62.915 63.158 0.00 0.00 0.00 4.75
988 1041 0.321653 ACCAACAATCCGAGGAGCAC 60.322 55.000 0.00 0.00 0.00 4.40
1012 1065 0.749091 TTGCGCAATGAGATCAGGGG 60.749 55.000 21.02 0.00 0.00 4.79
1038 1097 1.480219 CCGCCGTAATCTTGTCTCGC 61.480 60.000 0.00 0.00 0.00 5.03
1041 1100 0.179145 CCGTAATCTTGTCTCGCCGT 60.179 55.000 0.00 0.00 0.00 5.68
1338 1552 1.301637 CACCGTCACCATGCTGTCA 60.302 57.895 0.00 0.00 0.00 3.58
1443 1657 0.534877 ACTTCATCAAGGCGCACACA 60.535 50.000 10.83 0.00 33.37 3.72
1458 1672 2.675423 ACACAGCCCGACGAGCTA 60.675 61.111 2.67 0.00 38.95 3.32
1490 1712 2.360726 TAGCACTCCACGAGCCGA 60.361 61.111 1.50 0.00 32.04 5.54
1562 1793 0.256752 TCATACTCCCTCCGTCCGAA 59.743 55.000 0.00 0.00 0.00 4.30
1565 1796 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1566 1797 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1569 1800 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1571 1802 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1572 1803 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1579 1810 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1584 1815 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
1585 1816 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
1586 1817 8.816640 AAAATACTTGTCATCAAAATGGACAC 57.183 30.769 0.00 0.00 33.42 3.67
1588 1819 5.850557 ACTTGTCATCAAAATGGACACAA 57.149 34.783 0.00 0.00 33.42 3.33
1590 1821 6.638610 ACTTGTCATCAAAATGGACACAAAA 58.361 32.000 0.00 0.00 30.92 2.44
1593 1824 5.362143 TGTCATCAAAATGGACACAAAAGGA 59.638 36.000 0.00 0.00 33.42 3.36
1595 1826 6.366877 GTCATCAAAATGGACACAAAAGGATG 59.633 38.462 0.00 0.00 33.42 3.51
1596 1827 5.867903 TCAAAATGGACACAAAAGGATGT 57.132 34.783 0.00 0.00 0.00 3.06
1598 1829 7.537596 TCAAAATGGACACAAAAGGATGTAT 57.462 32.000 0.00 0.00 30.84 2.29
1600 1831 7.451255 TCAAAATGGACACAAAAGGATGTATCT 59.549 33.333 0.00 0.00 27.71 1.98
1602 1833 8.511604 AAATGGACACAAAAGGATGTATCTAG 57.488 34.615 0.00 0.00 27.71 2.43
1603 1834 6.867519 TGGACACAAAAGGATGTATCTAGA 57.132 37.500 0.00 0.00 27.71 2.43
1604 1835 7.252612 TGGACACAAAAGGATGTATCTAGAA 57.747 36.000 0.00 0.00 27.71 2.10
1606 1837 7.038302 TGGACACAAAAGGATGTATCTAGAACT 60.038 37.037 0.00 0.00 27.71 3.01
1607 1838 8.475639 GGACACAAAAGGATGTATCTAGAACTA 58.524 37.037 0.00 0.00 27.71 2.24
1641 1872 9.914834 AGATACATCCTAGTTCTAGATACATCC 57.085 37.037 8.26 0.00 0.00 3.51
1642 1873 9.914834 GATACATCCTAGTTCTAGATACATCCT 57.085 37.037 8.26 0.00 0.00 3.24
1645 1876 9.440761 ACATCCTAGTTCTAGATACATCCTTTT 57.559 33.333 8.26 0.00 0.00 2.27
1646 1877 9.703892 CATCCTAGTTCTAGATACATCCTTTTG 57.296 37.037 8.26 0.00 0.00 2.44
1647 1878 8.840200 TCCTAGTTCTAGATACATCCTTTTGT 57.160 34.615 8.26 0.00 0.00 2.83
1648 1879 8.696374 TCCTAGTTCTAGATACATCCTTTTGTG 58.304 37.037 8.26 0.00 0.00 3.33
1649 1880 8.478877 CCTAGTTCTAGATACATCCTTTTGTGT 58.521 37.037 8.26 0.00 0.00 3.72
1650 1881 9.877178 CTAGTTCTAGATACATCCTTTTGTGTT 57.123 33.333 0.00 0.00 0.00 3.32
1651 1882 8.779354 AGTTCTAGATACATCCTTTTGTGTTC 57.221 34.615 0.00 0.00 0.00 3.18
1652 1883 8.375506 AGTTCTAGATACATCCTTTTGTGTTCA 58.624 33.333 0.00 0.00 0.00 3.18
1653 1884 9.167311 GTTCTAGATACATCCTTTTGTGTTCAT 57.833 33.333 0.00 0.00 0.00 2.57
1654 1885 9.739276 TTCTAGATACATCCTTTTGTGTTCATT 57.261 29.630 0.00 0.00 0.00 2.57
1655 1886 9.739276 TCTAGATACATCCTTTTGTGTTCATTT 57.261 29.630 0.00 0.00 0.00 2.32
1658 1889 8.859090 AGATACATCCTTTTGTGTTCATTTTGA 58.141 29.630 0.00 0.00 0.00 2.69
1659 1890 9.643693 GATACATCCTTTTGTGTTCATTTTGAT 57.356 29.630 0.00 0.00 0.00 2.57
1660 1891 7.718272 ACATCCTTTTGTGTTCATTTTGATG 57.282 32.000 0.00 0.00 33.80 3.07
1661 1892 7.499292 ACATCCTTTTGTGTTCATTTTGATGA 58.501 30.769 0.00 0.00 32.39 2.92
1662 1893 7.439056 ACATCCTTTTGTGTTCATTTTGATGAC 59.561 33.333 0.00 0.00 32.39 3.06
1663 1894 6.871844 TCCTTTTGTGTTCATTTTGATGACA 58.128 32.000 0.00 0.00 0.00 3.58
1664 1895 7.326454 TCCTTTTGTGTTCATTTTGATGACAA 58.674 30.769 0.00 0.00 30.63 3.18
1665 1896 7.492020 TCCTTTTGTGTTCATTTTGATGACAAG 59.508 33.333 0.00 0.00 37.32 3.16
1666 1897 7.278424 CCTTTTGTGTTCATTTTGATGACAAGT 59.722 33.333 0.00 0.00 37.32 3.16
1667 1898 9.299963 CTTTTGTGTTCATTTTGATGACAAGTA 57.700 29.630 0.00 0.00 37.32 2.24
1668 1899 9.814899 TTTTGTGTTCATTTTGATGACAAGTAT 57.185 25.926 0.00 0.00 37.32 2.12
1669 1900 9.814899 TTTGTGTTCATTTTGATGACAAGTATT 57.185 25.926 0.00 0.00 37.32 1.89
1670 1901 9.814899 TTGTGTTCATTTTGATGACAAGTATTT 57.185 25.926 0.00 0.00 37.32 1.40
1671 1902 9.814899 TGTGTTCATTTTGATGACAAGTATTTT 57.185 25.926 0.00 0.00 37.32 1.82
1673 1904 9.179552 TGTTCATTTTGATGACAAGTATTTTCG 57.820 29.630 0.00 0.00 37.32 3.46
1674 1905 8.638565 GTTCATTTTGATGACAAGTATTTTCGG 58.361 33.333 0.00 0.00 37.32 4.30
1675 1906 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
1676 1907 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
1677 1908 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1678 1909 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1679 1910 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1680 1911 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1681 1912 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1682 1913 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1683 1914 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1684 1915 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1738 1972 1.739338 ATGAGATGAGACCGACCGGC 61.739 60.000 8.55 1.73 39.32 6.13
1759 1993 1.575922 CAAGCTAGCTGTTGCGCAA 59.424 52.632 21.02 21.02 45.42 4.85
1808 2046 7.920160 AGAAAGAGAGAGACCAATTCAATTC 57.080 36.000 0.00 0.00 0.00 2.17
1809 2047 7.456725 AGAAAGAGAGAGACCAATTCAATTCA 58.543 34.615 0.00 0.00 0.00 2.57
1810 2048 7.941238 AGAAAGAGAGAGACCAATTCAATTCAA 59.059 33.333 0.00 0.00 0.00 2.69
1811 2049 8.647256 AAAGAGAGAGACCAATTCAATTCAAT 57.353 30.769 0.00 0.00 0.00 2.57
1812 2050 8.647256 AAGAGAGAGACCAATTCAATTCAATT 57.353 30.769 0.00 0.00 0.00 2.32
1851 2089 6.996509 ACCTTGTTGCACTTTGATCAATTAT 58.003 32.000 9.40 0.00 0.00 1.28
1853 2091 8.028938 ACCTTGTTGCACTTTGATCAATTATAC 58.971 33.333 9.40 4.32 0.00 1.47
1854 2092 7.218773 CCTTGTTGCACTTTGATCAATTATACG 59.781 37.037 9.40 0.00 0.00 3.06
1855 2093 7.139896 TGTTGCACTTTGATCAATTATACGT 57.860 32.000 9.40 0.00 0.00 3.57
1856 2094 8.257830 TGTTGCACTTTGATCAATTATACGTA 57.742 30.769 9.40 0.00 0.00 3.57
1857 2095 8.172484 TGTTGCACTTTGATCAATTATACGTAC 58.828 33.333 9.40 2.68 0.00 3.67
2017 2320 4.760204 ACGGCAGCACTAAACTATTTTCTT 59.240 37.500 0.00 0.00 0.00 2.52
2018 2321 5.106673 ACGGCAGCACTAAACTATTTTCTTC 60.107 40.000 0.00 0.00 0.00 2.87
2019 2322 5.641709 GGCAGCACTAAACTATTTTCTTCC 58.358 41.667 0.00 0.00 0.00 3.46
2020 2323 5.183140 GGCAGCACTAAACTATTTTCTTCCA 59.817 40.000 0.00 0.00 0.00 3.53
2021 2324 6.127619 GGCAGCACTAAACTATTTTCTTCCAT 60.128 38.462 0.00 0.00 0.00 3.41
2064 2373 1.728426 AAAGCTTCGTCGGTCGTCG 60.728 57.895 0.00 3.88 40.80 5.12
2065 2374 2.398128 AAAGCTTCGTCGGTCGTCGT 62.398 55.000 0.00 0.00 40.80 4.34
2066 2375 2.776954 AAGCTTCGTCGGTCGTCGTC 62.777 60.000 9.38 0.00 40.80 4.20
2096 2405 1.341531 CCAGAGCCGTCGGATTAATCT 59.658 52.381 17.49 6.52 0.00 2.40
2122 2639 2.693074 GCTTTTTCTTGAACAGGTGGGA 59.307 45.455 0.00 0.00 0.00 4.37
2275 2792 1.361668 CCATGGTCTTCCGCAAGTCG 61.362 60.000 2.57 0.00 36.30 4.18
2328 2848 1.831652 GCCCAGCAGGTACACACTCT 61.832 60.000 0.00 0.00 38.26 3.24
2336 2867 4.884744 AGCAGGTACACACTCTAGATACAG 59.115 45.833 0.00 0.00 0.00 2.74
2344 2875 4.571176 CACACTCTAGATACAGACAGCGTA 59.429 45.833 0.00 0.00 0.00 4.42
2345 2876 4.571580 ACACTCTAGATACAGACAGCGTAC 59.428 45.833 0.00 0.00 0.00 3.67
2372 2950 1.142185 CGTAGTGCATGCGAGGTCTG 61.142 60.000 14.09 0.00 39.69 3.51
2373 2951 0.807667 GTAGTGCATGCGAGGTCTGG 60.808 60.000 14.09 0.00 0.00 3.86
2374 2952 2.578163 TAGTGCATGCGAGGTCTGGC 62.578 60.000 14.09 0.00 34.76 4.85
2387 2971 0.313672 GTCTGGCGTGGAAAAATGCA 59.686 50.000 0.00 0.00 33.52 3.96
2423 3007 1.195448 CAAGTTTGGAGCACAGCGTAG 59.805 52.381 0.00 0.00 0.00 3.51
2467 3071 4.025979 GGATTTTGGAACATAGCGTACGAG 60.026 45.833 21.65 7.66 39.30 4.18
2475 3106 1.917955 CATAGCGTACGAGTGTTGGTG 59.082 52.381 21.65 1.71 0.00 4.17
2478 3109 2.369629 CGTACGAGTGTTGGTGGCG 61.370 63.158 10.44 0.00 0.00 5.69
2511 3142 1.595093 GCCGGTCTTTTCATGGGTGG 61.595 60.000 1.90 0.00 0.00 4.61
2512 3143 0.251165 CCGGTCTTTTCATGGGTGGT 60.251 55.000 0.00 0.00 0.00 4.16
2513 3144 0.881118 CGGTCTTTTCATGGGTGGTG 59.119 55.000 0.00 0.00 0.00 4.17
2604 3251 0.602905 GATCGATCGGGCGGGAAAAT 60.603 55.000 16.41 0.00 0.00 1.82
2628 3276 4.249661 GAGATTTTTCTCTTCTGTCGGCT 58.750 43.478 0.00 0.00 34.12 5.52
2629 3277 4.249661 AGATTTTTCTCTTCTGTCGGCTC 58.750 43.478 0.00 0.00 0.00 4.70
2630 3278 2.065993 TTTTCTCTTCTGTCGGCTCG 57.934 50.000 0.00 0.00 0.00 5.03
2631 3279 0.243907 TTTCTCTTCTGTCGGCTCGG 59.756 55.000 0.00 0.00 0.00 4.63
2632 3280 2.202676 CTCTTCTGTCGGCTCGGC 60.203 66.667 0.00 0.00 0.00 5.54
2633 3281 2.676822 TCTTCTGTCGGCTCGGCT 60.677 61.111 1.12 0.00 30.55 5.52
2634 3282 2.202676 CTTCTGTCGGCTCGGCTC 60.203 66.667 1.12 0.00 30.55 4.70
2638 3299 3.916392 CTGTCGGCTCGGCTCGTTT 62.916 63.158 1.12 0.00 30.55 3.60
2639 3300 3.179939 GTCGGCTCGGCTCGTTTC 61.180 66.667 0.00 0.00 0.00 2.78
2642 3303 2.180017 GGCTCGGCTCGTTTCGTA 59.820 61.111 0.00 0.00 0.00 3.43
2645 3306 1.226603 CTCGGCTCGTTTCGTAGGG 60.227 63.158 0.00 0.00 0.00 3.53
2646 3307 2.202703 CGGCTCGTTTCGTAGGGG 60.203 66.667 0.00 0.00 0.00 4.79
2648 3309 2.577593 GCTCGTTTCGTAGGGGCT 59.422 61.111 0.00 0.00 35.24 5.19
2650 3311 1.590147 CTCGTTTCGTAGGGGCTGT 59.410 57.895 0.00 0.00 0.00 4.40
2794 3455 3.497262 GGAAATTATTAGGAAGCGGTCGG 59.503 47.826 0.00 0.00 0.00 4.79
2795 3456 3.832615 AATTATTAGGAAGCGGTCGGT 57.167 42.857 0.00 0.00 0.00 4.69
2796 3457 2.877043 TTATTAGGAAGCGGTCGGTC 57.123 50.000 0.00 0.00 0.00 4.79
2797 3458 0.664761 TATTAGGAAGCGGTCGGTCG 59.335 55.000 0.00 0.00 0.00 4.79
2839 3500 0.971386 AACCGGTCCGTATTCACACT 59.029 50.000 8.04 0.00 0.00 3.55
2847 3513 1.359848 CGTATTCACACTCACTGGCC 58.640 55.000 0.00 0.00 0.00 5.36
2849 3515 2.622436 GTATTCACACTCACTGGCCTC 58.378 52.381 3.32 0.00 0.00 4.70
2863 3533 2.128507 GCCTCGCTACCTACCTGCT 61.129 63.158 0.00 0.00 0.00 4.24
2888 3558 9.515020 CTGCTTTTCAAGTGTCAACTATAAAAA 57.485 29.630 0.00 0.00 34.77 1.94
2986 3659 8.822652 TGATGATAGTGTATGCAATCTTACTG 57.177 34.615 0.00 0.00 0.00 2.74
2997 3670 3.305335 GCAATCTTACTGGTTGTTGGGTG 60.305 47.826 0.00 0.00 0.00 4.61
2998 3671 3.876309 ATCTTACTGGTTGTTGGGTGT 57.124 42.857 0.00 0.00 0.00 4.16
2999 3672 3.655615 TCTTACTGGTTGTTGGGTGTT 57.344 42.857 0.00 0.00 0.00 3.32
3000 3673 3.547746 TCTTACTGGTTGTTGGGTGTTC 58.452 45.455 0.00 0.00 0.00 3.18
3024 3697 0.030638 GTGCACGTTGGCTGATGTTT 59.969 50.000 0.00 0.00 34.04 2.83
3025 3698 0.030504 TGCACGTTGGCTGATGTTTG 59.969 50.000 0.00 0.00 34.04 2.93
3026 3699 1.277495 GCACGTTGGCTGATGTTTGC 61.277 55.000 0.00 0.00 0.00 3.68
3027 3700 0.311790 CACGTTGGCTGATGTTTGCT 59.688 50.000 0.00 0.00 0.00 3.91
3028 3701 1.032014 ACGTTGGCTGATGTTTGCTT 58.968 45.000 0.00 0.00 0.00 3.91
3029 3702 1.408702 ACGTTGGCTGATGTTTGCTTT 59.591 42.857 0.00 0.00 0.00 3.51
3316 4128 2.456119 CGCCGCAAGAGTAAGCCAG 61.456 63.158 0.00 0.00 43.02 4.85
3317 4129 2.754995 GCCGCAAGAGTAAGCCAGC 61.755 63.158 0.00 0.00 43.02 4.85
3318 4130 1.375908 CCGCAAGAGTAAGCCAGCA 60.376 57.895 0.00 0.00 43.02 4.41
3319 4131 0.745845 CCGCAAGAGTAAGCCAGCAT 60.746 55.000 0.00 0.00 43.02 3.79
3320 4132 0.654683 CGCAAGAGTAAGCCAGCATC 59.345 55.000 0.00 0.00 43.02 3.91
3321 4133 1.741732 CGCAAGAGTAAGCCAGCATCT 60.742 52.381 0.00 0.00 43.02 2.90
3335 4150 3.569548 CAGCATCTACTACGCACTATGG 58.430 50.000 0.00 0.00 0.00 2.74
3337 4152 3.637229 AGCATCTACTACGCACTATGGTT 59.363 43.478 0.00 0.00 0.00 3.67
3344 4159 0.955428 ACGCACTATGGTTGGCACTG 60.955 55.000 0.00 0.00 0.00 3.66
3346 4161 1.937546 GCACTATGGTTGGCACTGGC 61.938 60.000 0.00 0.00 40.13 4.85
3347 4162 0.608856 CACTATGGTTGGCACTGGCA 60.609 55.000 0.07 0.07 43.71 4.92
3348 4163 0.322816 ACTATGGTTGGCACTGGCAG 60.323 55.000 14.16 14.16 43.71 4.85
3349 4164 0.035152 CTATGGTTGGCACTGGCAGA 60.035 55.000 23.66 0.00 43.71 4.26
3350 4165 0.322456 TATGGTTGGCACTGGCAGAC 60.322 55.000 23.66 12.58 43.71 3.51
3351 4166 2.203337 GGTTGGCACTGGCAGACA 60.203 61.111 23.66 13.93 43.71 3.41
3410 4319 6.039159 GGCTCTCTTATTAATTTCAGCTGCTT 59.961 38.462 9.47 5.07 0.00 3.91
3871 4798 3.795905 GGGGTTCGACCACTGGTA 58.204 61.111 0.00 0.00 39.07 3.25
3945 4872 1.292541 GACCGGAGTGACAGGTTCC 59.707 63.158 9.46 0.00 46.35 3.62
4111 5063 7.499895 GGATTAGATAGGTTATAGGTCTCGAGG 59.500 44.444 13.56 0.00 0.00 4.63
4212 5164 4.689062 AGATGGGTGTAGTATATGAGGGG 58.311 47.826 0.00 0.00 0.00 4.79
4213 5165 3.269592 TGGGTGTAGTATATGAGGGGG 57.730 52.381 0.00 0.00 0.00 5.40
4263 5216 1.996898 TGTAAATTCGCTGCCTGTACG 59.003 47.619 0.00 0.00 0.00 3.67
4275 5228 2.553602 TGCCTGTACGTACGAGAAAAGA 59.446 45.455 24.41 0.00 0.00 2.52
4305 5258 6.761242 TGAGAATTCAAGTTACATATCGGTGG 59.239 38.462 8.44 0.00 0.00 4.61
4308 5261 6.677781 ATTCAAGTTACATATCGGTGGTTG 57.322 37.500 0.00 0.00 0.00 3.77
4312 5265 5.272283 AGTTACATATCGGTGGTTGTAGG 57.728 43.478 0.00 0.00 0.00 3.18
4328 5281 7.120726 GTGGTTGTAGGTTGCTTAATTGTCTAT 59.879 37.037 0.00 0.00 0.00 1.98
4337 5290 6.381481 TGCTTAATTGTCTATGCTTGGATG 57.619 37.500 0.00 0.00 0.00 3.51
4338 5291 6.121590 TGCTTAATTGTCTATGCTTGGATGA 58.878 36.000 0.00 0.00 0.00 2.92
4340 5293 7.040892 TGCTTAATTGTCTATGCTTGGATGATC 60.041 37.037 0.00 0.00 0.00 2.92
4341 5294 7.040892 GCTTAATTGTCTATGCTTGGATGATCA 60.041 37.037 0.00 0.00 0.00 2.92
4416 5373 0.251341 AAGCACGAAAGAAGGCCCAT 60.251 50.000 0.00 0.00 0.00 4.00
4423 5380 0.394352 AAAGAAGGCCCATAGCACCG 60.394 55.000 0.00 0.00 46.50 4.94
4428 5385 2.342279 GCCCATAGCACCGCGATA 59.658 61.111 8.23 0.00 42.97 2.92
4430 5387 0.174845 GCCCATAGCACCGCGATATA 59.825 55.000 8.23 0.00 42.97 0.86
4435 5392 3.555956 CCATAGCACCGCGATATAATTCC 59.444 47.826 8.23 0.00 0.00 3.01
4436 5393 2.094762 AGCACCGCGATATAATTCCC 57.905 50.000 8.23 0.00 0.00 3.97
4437 5394 1.623811 AGCACCGCGATATAATTCCCT 59.376 47.619 8.23 0.00 0.00 4.20
4438 5395 2.038557 AGCACCGCGATATAATTCCCTT 59.961 45.455 8.23 0.00 0.00 3.95
4439 5396 2.812011 GCACCGCGATATAATTCCCTTT 59.188 45.455 8.23 0.00 0.00 3.11
4482 5439 4.820897 TGTAGGTAGAGCACTCAAACATG 58.179 43.478 0.00 0.00 0.00 3.21
4484 5441 1.740025 GGTAGAGCACTCAAACATGGC 59.260 52.381 0.00 0.00 0.00 4.40
4485 5442 1.740025 GTAGAGCACTCAAACATGGCC 59.260 52.381 0.00 0.00 0.00 5.36
4504 5461 5.619220 TGGCCATTGCAAAATAAAGAGTTT 58.381 33.333 0.00 0.00 40.13 2.66
4545 5502 9.250624 TCTAAATTTTGTTTTATTGTTCACCCG 57.749 29.630 0.00 0.00 0.00 5.28
4603 5560 4.503714 ACGATACATCCCCTTCACAAAT 57.496 40.909 0.00 0.00 0.00 2.32
4730 5688 3.691609 CCCATAGGACAGCAAGAGAAAAC 59.308 47.826 0.00 0.00 33.47 2.43
4741 5699 6.015940 ACAGCAAGAGAAAACCTAGGAAATTG 60.016 38.462 17.98 10.77 0.00 2.32
4829 5853 4.112634 TCAAGATTTCTCGTGGCTAATCG 58.887 43.478 0.00 0.00 33.38 3.34
4867 5891 2.235016 TCCCTTGCATACAACACCAAC 58.765 47.619 0.00 0.00 0.00 3.77
4868 5892 1.959985 CCCTTGCATACAACACCAACA 59.040 47.619 0.00 0.00 0.00 3.33
4870 5894 3.181471 CCCTTGCATACAACACCAACAAA 60.181 43.478 0.00 0.00 0.00 2.83
4871 5895 4.502950 CCCTTGCATACAACACCAACAAAT 60.503 41.667 0.00 0.00 0.00 2.32
4872 5896 4.685628 CCTTGCATACAACACCAACAAATC 59.314 41.667 0.00 0.00 0.00 2.17
4873 5897 4.926140 TGCATACAACACCAACAAATCA 57.074 36.364 0.00 0.00 0.00 2.57
4874 5898 4.615949 TGCATACAACACCAACAAATCAC 58.384 39.130 0.00 0.00 0.00 3.06
4876 5900 4.261994 GCATACAACACCAACAAATCACCT 60.262 41.667 0.00 0.00 0.00 4.00
4877 5901 5.460646 CATACAACACCAACAAATCACCTC 58.539 41.667 0.00 0.00 0.00 3.85
4878 5902 3.631250 ACAACACCAACAAATCACCTCT 58.369 40.909 0.00 0.00 0.00 3.69
4881 5906 5.833131 ACAACACCAACAAATCACCTCTAAT 59.167 36.000 0.00 0.00 0.00 1.73
4892 5917 9.927668 ACAAATCACCTCTAATTAAAAACATGG 57.072 29.630 0.00 0.00 0.00 3.66
4898 5923 7.393234 CACCTCTAATTAAAAACATGGGTCTCA 59.607 37.037 0.00 0.00 0.00 3.27
4920 5945 6.306199 TCATGAGGTCAAAAAGAATGGAAGA 58.694 36.000 0.00 0.00 0.00 2.87
5041 6066 0.243636 CAACAAAATCTCACGGGCCC 59.756 55.000 13.57 13.57 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.875691 CATGTTGGCTATAAGATAAGCTGTATA 57.124 33.333 0.00 0.00 38.80 1.47
3 4 7.735917 ACATGTTGGCTATAAGATAAGCTGTA 58.264 34.615 0.00 0.00 38.80 2.74
4 5 6.595682 ACATGTTGGCTATAAGATAAGCTGT 58.404 36.000 0.00 0.00 38.80 4.40
5 6 7.657354 TGTACATGTTGGCTATAAGATAAGCTG 59.343 37.037 2.30 0.00 38.80 4.24
6 7 7.735917 TGTACATGTTGGCTATAAGATAAGCT 58.264 34.615 2.30 0.00 38.80 3.74
7 8 7.962964 TGTACATGTTGGCTATAAGATAAGC 57.037 36.000 2.30 0.00 38.03 3.09
60 61 9.699410 AGAATGAAAGATGGGTCACATAATAAA 57.301 29.630 0.00 0.00 40.72 1.40
61 62 9.342308 GAGAATGAAAGATGGGTCACATAATAA 57.658 33.333 0.00 0.00 40.72 1.40
62 63 8.493607 TGAGAATGAAAGATGGGTCACATAATA 58.506 33.333 0.00 0.00 40.72 0.98
63 64 7.284034 GTGAGAATGAAAGATGGGTCACATAAT 59.716 37.037 0.00 0.00 40.72 1.28
64 65 6.599244 GTGAGAATGAAAGATGGGTCACATAA 59.401 38.462 0.00 0.00 40.72 1.90
65 66 6.115446 GTGAGAATGAAAGATGGGTCACATA 58.885 40.000 0.00 0.00 40.72 2.29
66 67 4.946157 GTGAGAATGAAAGATGGGTCACAT 59.054 41.667 0.00 0.00 44.18 3.21
67 68 4.202451 TGTGAGAATGAAAGATGGGTCACA 60.202 41.667 0.00 0.00 40.44 3.58
68 69 4.326826 TGTGAGAATGAAAGATGGGTCAC 58.673 43.478 0.00 0.00 34.86 3.67
69 70 4.639078 TGTGAGAATGAAAGATGGGTCA 57.361 40.909 0.00 0.00 0.00 4.02
70 71 5.474876 ACTTTGTGAGAATGAAAGATGGGTC 59.525 40.000 0.00 0.00 0.00 4.46
71 72 5.242393 CACTTTGTGAGAATGAAAGATGGGT 59.758 40.000 0.00 0.00 35.23 4.51
72 73 5.706916 CACTTTGTGAGAATGAAAGATGGG 58.293 41.667 0.00 0.00 35.23 4.00
73 74 5.159209 GCACTTTGTGAGAATGAAAGATGG 58.841 41.667 1.52 0.00 35.23 3.51
74 75 5.048224 AGGCACTTTGTGAGAATGAAAGATG 60.048 40.000 1.52 0.00 35.23 2.90
75 76 5.075493 AGGCACTTTGTGAGAATGAAAGAT 58.925 37.500 1.52 0.00 35.23 2.40
76 77 4.464008 AGGCACTTTGTGAGAATGAAAGA 58.536 39.130 1.52 0.00 35.23 2.52
77 78 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
78 79 6.061441 TCTTAGGCACTTTGTGAGAATGAAA 58.939 36.000 1.52 0.00 41.75 2.69
79 80 5.620206 TCTTAGGCACTTTGTGAGAATGAA 58.380 37.500 1.52 0.00 41.75 2.57
80 81 5.227569 TCTTAGGCACTTTGTGAGAATGA 57.772 39.130 1.52 0.00 41.75 2.57
81 82 4.142730 GCTCTTAGGCACTTTGTGAGAATG 60.143 45.833 1.52 0.00 41.75 2.67
82 83 4.006319 GCTCTTAGGCACTTTGTGAGAAT 58.994 43.478 1.52 0.00 41.75 2.40
83 84 3.181455 TGCTCTTAGGCACTTTGTGAGAA 60.181 43.478 1.52 0.00 41.75 2.87
84 85 2.368548 TGCTCTTAGGCACTTTGTGAGA 59.631 45.455 1.52 0.00 41.75 3.27
85 86 2.771089 TGCTCTTAGGCACTTTGTGAG 58.229 47.619 1.52 0.00 41.75 3.51
86 87 2.928801 TGCTCTTAGGCACTTTGTGA 57.071 45.000 1.52 0.00 41.75 3.58
101 102 4.939966 GAGTCAGCTCTAGCACGTGCTC 62.940 59.091 43.74 29.46 42.10 4.26
102 103 3.144298 GAGTCAGCTCTAGCACGTGCT 62.144 57.143 41.46 41.46 45.16 4.40
103 104 0.800300 GAGTCAGCTCTAGCACGTGC 60.800 60.000 32.79 32.79 45.16 5.34
104 105 3.320884 GAGTCAGCTCTAGCACGTG 57.679 57.895 12.28 12.28 45.16 4.49
113 114 2.999507 TCTTCGTGAAGAGTCAGCTC 57.000 50.000 8.19 0.00 42.06 4.09
121 122 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
122 123 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
123 124 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
124 125 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
125 126 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
126 127 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
127 128 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
128 129 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
129 130 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
130 131 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
131 132 0.537653 AAGAGAAGGTAAGCGGGCTC 59.462 55.000 0.00 0.00 0.00 4.70
132 133 0.984995 AAAGAGAAGGTAAGCGGGCT 59.015 50.000 0.00 0.00 0.00 5.19
133 134 1.370609 GAAAGAGAAGGTAAGCGGGC 58.629 55.000 0.00 0.00 0.00 6.13
134 135 1.555533 AGGAAAGAGAAGGTAAGCGGG 59.444 52.381 0.00 0.00 0.00 6.13
135 136 2.418884 GGAGGAAAGAGAAGGTAAGCGG 60.419 54.545 0.00 0.00 0.00 5.52
136 137 2.233922 TGGAGGAAAGAGAAGGTAAGCG 59.766 50.000 0.00 0.00 0.00 4.68
137 138 3.983044 TGGAGGAAAGAGAAGGTAAGC 57.017 47.619 0.00 0.00 0.00 3.09
138 139 5.491323 AGTTGGAGGAAAGAGAAGGTAAG 57.509 43.478 0.00 0.00 0.00 2.34
139 140 6.520231 GCTTAGTTGGAGGAAAGAGAAGGTAA 60.520 42.308 0.00 0.00 0.00 2.85
140 141 5.046520 GCTTAGTTGGAGGAAAGAGAAGGTA 60.047 44.000 0.00 0.00 0.00 3.08
141 142 4.263112 GCTTAGTTGGAGGAAAGAGAAGGT 60.263 45.833 0.00 0.00 0.00 3.50
142 143 4.257731 GCTTAGTTGGAGGAAAGAGAAGG 58.742 47.826 0.00 0.00 0.00 3.46
143 144 4.899502 TGCTTAGTTGGAGGAAAGAGAAG 58.100 43.478 0.00 0.00 0.00 2.85
144 145 4.593206 TCTGCTTAGTTGGAGGAAAGAGAA 59.407 41.667 0.00 0.00 0.00 2.87
145 146 4.160329 TCTGCTTAGTTGGAGGAAAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
146 147 4.543590 TCTGCTTAGTTGGAGGAAAGAG 57.456 45.455 0.00 0.00 0.00 2.85
147 148 4.974645 TTCTGCTTAGTTGGAGGAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
148 149 7.872113 ATATTTCTGCTTAGTTGGAGGAAAG 57.128 36.000 0.00 0.00 0.00 2.62
149 150 8.548877 AGTATATTTCTGCTTAGTTGGAGGAAA 58.451 33.333 0.00 0.00 0.00 3.13
150 151 8.090788 AGTATATTTCTGCTTAGTTGGAGGAA 57.909 34.615 0.00 0.00 0.00 3.36
151 152 7.676683 AGTATATTTCTGCTTAGTTGGAGGA 57.323 36.000 0.00 0.00 0.00 3.71
152 153 8.643324 ACTAGTATATTTCTGCTTAGTTGGAGG 58.357 37.037 0.00 0.00 0.00 4.30
183 184 1.803625 CGAGTCGGCGGGCTATAAAAA 60.804 52.381 7.21 0.00 0.00 1.94
184 185 0.249155 CGAGTCGGCGGGCTATAAAA 60.249 55.000 7.21 0.00 0.00 1.52
185 186 1.361271 CGAGTCGGCGGGCTATAAA 59.639 57.895 7.21 0.00 0.00 1.40
186 187 3.036577 CGAGTCGGCGGGCTATAA 58.963 61.111 7.21 0.00 0.00 0.98
197 198 3.364062 CAAGTACAATAGAGCCGAGTCG 58.636 50.000 5.29 5.29 0.00 4.18
198 199 3.117046 GCAAGTACAATAGAGCCGAGTC 58.883 50.000 0.00 0.00 0.00 3.36
199 200 2.761208 AGCAAGTACAATAGAGCCGAGT 59.239 45.455 0.00 0.00 0.00 4.18
200 201 3.067461 AGAGCAAGTACAATAGAGCCGAG 59.933 47.826 0.00 0.00 0.00 4.63
201 202 3.024547 AGAGCAAGTACAATAGAGCCGA 58.975 45.455 0.00 0.00 0.00 5.54
202 203 3.444703 AGAGCAAGTACAATAGAGCCG 57.555 47.619 0.00 0.00 0.00 5.52
203 204 5.051153 GGTAAGAGCAAGTACAATAGAGCC 58.949 45.833 0.00 0.00 0.00 4.70
204 205 5.661458 TGGTAAGAGCAAGTACAATAGAGC 58.339 41.667 0.00 0.00 0.00 4.09
205 206 6.975772 GTCTGGTAAGAGCAAGTACAATAGAG 59.024 42.308 0.00 0.00 31.37 2.43
206 207 6.864342 GTCTGGTAAGAGCAAGTACAATAGA 58.136 40.000 0.00 0.00 31.37 1.98
218 219 2.187163 GGCCGGTCTGGTAAGAGC 59.813 66.667 1.90 0.00 45.64 4.09
219 220 2.494918 CGGCCGGTCTGGTAAGAG 59.505 66.667 20.10 0.00 41.21 2.85
220 221 3.766691 GCGGCCGGTCTGGTAAGA 61.767 66.667 29.38 0.00 41.21 2.10
221 222 4.832608 GGCGGCCGGTCTGGTAAG 62.833 72.222 29.38 0.00 41.21 2.34
273 275 4.083581 CCTGTAACAGGCTTTCATTTCG 57.916 45.455 0.00 0.00 45.13 3.46
423 425 4.467062 GGGCTTTTCAGAGCGCGC 62.467 66.667 26.66 26.66 44.08 6.86
429 431 4.715523 CGGCCGGGGCTTTTCAGA 62.716 66.667 20.10 0.00 41.60 3.27
441 443 3.525844 TATACGTGTAGCGCGGCCG 62.526 63.158 24.05 24.05 46.11 6.13
442 444 2.012948 GTATACGTGTAGCGCGGCC 61.013 63.158 8.83 0.00 46.11 6.13
443 445 2.352333 CGTATACGTGTAGCGCGGC 61.352 63.158 17.16 0.00 46.11 6.53
444 446 2.352333 GCGTATACGTGTAGCGCGG 61.352 63.158 25.04 0.00 46.11 6.46
445 447 3.123484 GCGTATACGTGTAGCGCG 58.877 61.111 25.04 0.00 46.11 6.86
446 448 3.123484 CGCGTATACGTGTAGCGC 58.877 61.111 26.58 20.56 46.11 5.92
511 529 1.062505 ACAGATGGTTGGGTTGGGTTT 60.063 47.619 0.00 0.00 0.00 3.27
529 547 1.004745 GAGGCAGGGGAGATTGAAACA 59.995 52.381 0.00 0.00 0.00 2.83
530 548 1.004745 TGAGGCAGGGGAGATTGAAAC 59.995 52.381 0.00 0.00 0.00 2.78
531 549 1.004745 GTGAGGCAGGGGAGATTGAAA 59.995 52.381 0.00 0.00 0.00 2.69
532 550 0.620556 GTGAGGCAGGGGAGATTGAA 59.379 55.000 0.00 0.00 0.00 2.69
541 559 0.389025 GTTTGTTTGGTGAGGCAGGG 59.611 55.000 0.00 0.00 0.00 4.45
543 561 1.021202 TCGTTTGTTTGGTGAGGCAG 58.979 50.000 0.00 0.00 0.00 4.85
544 562 1.686355 ATCGTTTGTTTGGTGAGGCA 58.314 45.000 0.00 0.00 0.00 4.75
545 563 2.550606 TGTATCGTTTGTTTGGTGAGGC 59.449 45.455 0.00 0.00 0.00 4.70
658 692 8.079211 ACTCTAGAGATAGGAGTAGATAGCAG 57.921 42.308 26.57 0.00 38.37 4.24
670 704 8.983789 GGGGGAATATAAAACTCTAGAGATAGG 58.016 40.741 26.57 0.04 0.00 2.57
920 969 4.457496 CGCCCTGTGATCACCGCT 62.457 66.667 22.85 0.00 0.00 5.52
958 1011 1.541588 GATTGTTGGTGTGCCTTCCTC 59.458 52.381 0.00 0.00 35.27 3.71
959 1012 1.620822 GATTGTTGGTGTGCCTTCCT 58.379 50.000 0.00 0.00 35.27 3.36
960 1013 0.603065 GGATTGTTGGTGTGCCTTCC 59.397 55.000 0.00 0.00 35.27 3.46
988 1041 2.011947 TGATCTCATTGCGCAAGAAGG 58.988 47.619 28.62 16.84 43.02 3.46
1018 1071 0.179145 CGAGACAAGATTACGGCGGT 60.179 55.000 13.24 1.39 0.00 5.68
1338 1552 1.270826 CCGTACTCGATCATGCTCCAT 59.729 52.381 0.00 0.00 39.71 3.41
1443 1657 2.786495 CCATAGCTCGTCGGGCTGT 61.786 63.158 29.63 20.84 40.52 4.40
1458 1672 2.496291 GCTACGTACCTCGGCCCAT 61.496 63.158 0.00 0.00 44.69 4.00
1506 1728 0.107456 GATGGATGGAGGTGACGCAT 59.893 55.000 0.00 0.00 0.00 4.73
1540 1771 0.468400 GGACGGAGGGAGTATGAGCT 60.468 60.000 0.00 0.00 0.00 4.09
1541 1772 1.797211 CGGACGGAGGGAGTATGAGC 61.797 65.000 0.00 0.00 0.00 4.26
1542 1773 0.179026 TCGGACGGAGGGAGTATGAG 60.179 60.000 0.00 0.00 0.00 2.90
1543 1774 0.256752 TTCGGACGGAGGGAGTATGA 59.743 55.000 0.00 0.00 0.00 2.15
1544 1775 1.108776 TTTCGGACGGAGGGAGTATG 58.891 55.000 0.00 0.00 0.00 2.39
1545 1776 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
1546 1777 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
1547 1778 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
1549 1780 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1562 1793 7.950512 TGTGTCCATTTTGATGACAAGTATTT 58.049 30.769 0.00 0.00 37.32 1.40
1565 1796 6.951062 TTGTGTCCATTTTGATGACAAGTA 57.049 33.333 0.00 0.00 37.32 2.24
1566 1797 5.850557 TTGTGTCCATTTTGATGACAAGT 57.149 34.783 0.00 0.00 37.32 3.16
1569 1800 5.362143 TCCTTTTGTGTCCATTTTGATGACA 59.638 36.000 0.00 0.00 0.00 3.58
1571 1802 6.041865 ACATCCTTTTGTGTCCATTTTGATGA 59.958 34.615 0.00 0.00 32.39 2.92
1572 1803 6.225318 ACATCCTTTTGTGTCCATTTTGATG 58.775 36.000 0.00 0.00 33.80 3.07
1579 1810 7.437713 TCTAGATACATCCTTTTGTGTCCAT 57.562 36.000 0.00 0.00 38.19 3.41
1615 1846 9.914834 GGATGTATCTAGAACTAGGATGTATCT 57.085 37.037 0.00 0.00 34.06 1.98
1616 1847 9.914834 AGGATGTATCTAGAACTAGGATGTATC 57.085 37.037 0.00 7.04 34.06 2.24
1619 1850 9.440761 AAAAGGATGTATCTAGAACTAGGATGT 57.559 33.333 0.00 0.00 34.06 3.06
1620 1851 9.703892 CAAAAGGATGTATCTAGAACTAGGATG 57.296 37.037 0.00 0.00 34.06 3.51
1621 1852 9.440761 ACAAAAGGATGTATCTAGAACTAGGAT 57.559 33.333 0.00 4.71 34.06 3.24
1623 1854 8.478877 ACACAAAAGGATGTATCTAGAACTAGG 58.521 37.037 0.00 0.00 31.34 3.02
1624 1855 9.877178 AACACAAAAGGATGTATCTAGAACTAG 57.123 33.333 0.00 2.77 31.51 2.57
1626 1857 8.375506 TGAACACAAAAGGATGTATCTAGAACT 58.624 33.333 0.00 0.00 30.84 3.01
1627 1858 8.547967 TGAACACAAAAGGATGTATCTAGAAC 57.452 34.615 0.00 0.00 30.84 3.01
1628 1859 9.739276 AATGAACACAAAAGGATGTATCTAGAA 57.261 29.630 0.00 0.00 30.84 2.10
1629 1860 9.739276 AAATGAACACAAAAGGATGTATCTAGA 57.261 29.630 0.00 0.00 30.84 2.43
1632 1863 8.859090 TCAAAATGAACACAAAAGGATGTATCT 58.141 29.630 0.00 0.00 30.84 1.98
1633 1864 9.643693 ATCAAAATGAACACAAAAGGATGTATC 57.356 29.630 0.00 0.00 30.84 2.24
1634 1865 9.426837 CATCAAAATGAACACAAAAGGATGTAT 57.573 29.630 0.00 0.00 34.61 2.29
1635 1866 8.637099 TCATCAAAATGAACACAAAAGGATGTA 58.363 29.630 0.00 0.00 38.97 2.29
1636 1867 7.439056 GTCATCAAAATGAACACAAAAGGATGT 59.561 33.333 0.00 0.00 43.42 3.06
1637 1868 7.438757 TGTCATCAAAATGAACACAAAAGGATG 59.561 33.333 0.00 0.00 43.42 3.51
1638 1869 7.499292 TGTCATCAAAATGAACACAAAAGGAT 58.501 30.769 0.00 0.00 43.42 3.24
1639 1870 6.871844 TGTCATCAAAATGAACACAAAAGGA 58.128 32.000 0.00 0.00 43.42 3.36
1641 1872 8.188531 ACTTGTCATCAAAATGAACACAAAAG 57.811 30.769 8.13 0.00 43.42 2.27
1642 1873 9.814899 ATACTTGTCATCAAAATGAACACAAAA 57.185 25.926 8.13 2.74 43.42 2.44
1643 1874 9.814899 AATACTTGTCATCAAAATGAACACAAA 57.185 25.926 8.13 0.00 43.42 2.83
1645 1876 9.814899 AAAATACTTGTCATCAAAATGAACACA 57.185 25.926 0.00 0.00 43.42 3.72
1647 1878 9.179552 CGAAAATACTTGTCATCAAAATGAACA 57.820 29.630 0.00 0.00 43.42 3.18
1648 1879 8.638565 CCGAAAATACTTGTCATCAAAATGAAC 58.361 33.333 0.00 0.00 43.42 3.18
1649 1880 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
1650 1881 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
1651 1882 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1652 1883 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1653 1884 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1654 1885 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1655 1886 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1656 1887 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1657 1888 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1658 1889 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1659 1890 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1660 1891 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1661 1892 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1662 1893 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1663 1894 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1664 1895 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1665 1896 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1666 1897 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1667 1898 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
1668 1899 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
1669 1900 1.318158 GCTACTCCCTCCGTCCGAAA 61.318 60.000 0.00 0.00 0.00 3.46
1670 1901 1.751927 GCTACTCCCTCCGTCCGAA 60.752 63.158 0.00 0.00 0.00 4.30
1671 1902 2.124403 GCTACTCCCTCCGTCCGA 60.124 66.667 0.00 0.00 0.00 4.55
1672 1903 2.124236 AGCTACTCCCTCCGTCCG 60.124 66.667 0.00 0.00 0.00 4.79
1673 1904 1.380112 ACAGCTACTCCCTCCGTCC 60.380 63.158 0.00 0.00 0.00 4.79
1674 1905 0.966370 ACACAGCTACTCCCTCCGTC 60.966 60.000 0.00 0.00 0.00 4.79
1675 1906 0.542232 AACACAGCTACTCCCTCCGT 60.542 55.000 0.00 0.00 0.00 4.69
1676 1907 0.173708 GAACACAGCTACTCCCTCCG 59.826 60.000 0.00 0.00 0.00 4.63
1677 1908 1.205893 CTGAACACAGCTACTCCCTCC 59.794 57.143 0.00 0.00 0.00 4.30
1678 1909 2.171840 TCTGAACACAGCTACTCCCTC 58.828 52.381 0.00 0.00 0.00 4.30
1679 1910 2.310779 TCTGAACACAGCTACTCCCT 57.689 50.000 0.00 0.00 0.00 4.20
1680 1911 3.489398 CGTATCTGAACACAGCTACTCCC 60.489 52.174 0.00 0.00 33.67 4.30
1681 1912 3.377485 TCGTATCTGAACACAGCTACTCC 59.623 47.826 0.00 0.00 33.67 3.85
1682 1913 4.617808 TCGTATCTGAACACAGCTACTC 57.382 45.455 0.00 0.00 33.67 2.59
1683 1914 4.260825 CGATCGTATCTGAACACAGCTACT 60.261 45.833 7.03 0.00 33.67 2.57
1684 1915 3.969352 CGATCGTATCTGAACACAGCTAC 59.031 47.826 7.03 0.00 32.98 3.58
1738 1972 1.975363 GCGCAACAGCTAGCTTGGAG 61.975 60.000 16.46 10.26 0.00 3.86
1759 1993 0.674895 GGAACGATCACTGGCTTGCT 60.675 55.000 0.00 0.00 0.00 3.91
1769 2003 5.853936 TCTCTTTCTTTCTTGGAACGATCA 58.146 37.500 0.00 0.00 0.00 2.92
1808 2046 4.708177 AGGTAGCTAGGTGTGCATAATTG 58.292 43.478 4.27 0.00 0.00 2.32
1809 2047 5.126067 CAAGGTAGCTAGGTGTGCATAATT 58.874 41.667 4.27 0.00 0.00 1.40
1810 2048 4.164221 ACAAGGTAGCTAGGTGTGCATAAT 59.836 41.667 4.27 0.00 0.00 1.28
1811 2049 3.517901 ACAAGGTAGCTAGGTGTGCATAA 59.482 43.478 4.27 0.00 0.00 1.90
1812 2050 3.104512 ACAAGGTAGCTAGGTGTGCATA 58.895 45.455 4.27 0.00 0.00 3.14
1886 2143 4.226620 TCTCCCCTAACCAGAAAATACCAC 59.773 45.833 0.00 0.00 0.00 4.16
1887 2144 4.440808 TCTCCCCTAACCAGAAAATACCA 58.559 43.478 0.00 0.00 0.00 3.25
1888 2145 5.446260 TTCTCCCCTAACCAGAAAATACC 57.554 43.478 0.00 0.00 0.00 2.73
1889 2146 7.173032 TCTTTTCTCCCCTAACCAGAAAATAC 58.827 38.462 6.55 0.00 42.45 1.89
1890 2147 7.337826 TCTTTTCTCCCCTAACCAGAAAATA 57.662 36.000 6.55 0.00 42.45 1.40
1891 2148 6.214177 TCTTTTCTCCCCTAACCAGAAAAT 57.786 37.500 6.55 0.00 42.45 1.82
2064 2373 1.099879 GGCTCTGGTGCATCATGGAC 61.100 60.000 0.00 0.00 38.03 4.02
2065 2374 1.225426 GGCTCTGGTGCATCATGGA 59.775 57.895 0.00 0.00 34.04 3.41
2066 2375 2.184830 CGGCTCTGGTGCATCATGG 61.185 63.158 0.00 0.00 34.04 3.66
2096 2405 4.821805 CACCTGTTCAAGAAAAAGCTAGGA 59.178 41.667 0.00 0.00 0.00 2.94
2328 2848 3.264947 ACGTGTACGCTGTCTGTATCTA 58.735 45.455 4.67 0.00 44.43 1.98
2336 2867 1.764967 CGTCAACGTGTACGCTGTC 59.235 57.895 9.61 0.00 44.43 3.51
2365 2943 1.200020 CATTTTTCCACGCCAGACCTC 59.800 52.381 0.00 0.00 0.00 3.85
2367 2945 0.388520 GCATTTTTCCACGCCAGACC 60.389 55.000 0.00 0.00 0.00 3.85
2368 2946 0.313672 TGCATTTTTCCACGCCAGAC 59.686 50.000 0.00 0.00 0.00 3.51
2372 2950 2.147436 TTCTTGCATTTTTCCACGCC 57.853 45.000 0.00 0.00 0.00 5.68
2373 2951 4.528531 TTTTTCTTGCATTTTTCCACGC 57.471 36.364 0.00 0.00 0.00 5.34
2374 2952 7.166168 CGATATTTTTCTTGCATTTTTCCACG 58.834 34.615 0.00 0.00 0.00 4.94
2387 2971 5.925969 CCAAACTTGCACCGATATTTTTCTT 59.074 36.000 0.00 0.00 0.00 2.52
2423 3007 1.135460 GGTACGCAGACAGACTGGTAC 60.135 57.143 7.51 16.20 45.82 3.34
2467 3071 1.658686 TTGACCAACGCCACCAACAC 61.659 55.000 0.00 0.00 0.00 3.32
2511 3142 4.156008 ACAAGAAAAGAACACACCTCACAC 59.844 41.667 0.00 0.00 0.00 3.82
2512 3143 4.155826 CACAAGAAAAGAACACACCTCACA 59.844 41.667 0.00 0.00 0.00 3.58
2513 3144 4.662145 CACAAGAAAAGAACACACCTCAC 58.338 43.478 0.00 0.00 0.00 3.51
2604 3251 4.569943 CCGACAGAAGAGAAAAATCTCCA 58.430 43.478 2.35 0.00 37.46 3.86
2628 3276 2.703798 CCCCTACGAAACGAGCCGA 61.704 63.158 1.50 0.00 0.00 5.54
2629 3277 2.202703 CCCCTACGAAACGAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
2630 3278 2.510918 GCCCCTACGAAACGAGCC 60.511 66.667 0.00 0.00 0.00 4.70
2631 3279 1.810030 CAGCCCCTACGAAACGAGC 60.810 63.158 0.00 0.00 0.00 5.03
2632 3280 0.458025 GACAGCCCCTACGAAACGAG 60.458 60.000 0.00 0.00 0.00 4.18
2633 3281 0.896940 AGACAGCCCCTACGAAACGA 60.897 55.000 0.00 0.00 0.00 3.85
2634 3282 0.736325 CAGACAGCCCCTACGAAACG 60.736 60.000 0.00 0.00 0.00 3.60
2638 3299 3.075005 GCCAGACAGCCCCTACGA 61.075 66.667 0.00 0.00 0.00 3.43
2639 3300 3.077556 AGCCAGACAGCCCCTACG 61.078 66.667 0.00 0.00 0.00 3.51
2646 3307 4.996434 ACACGGCAGCCAGACAGC 62.996 66.667 13.30 0.00 0.00 4.40
2648 3309 4.624364 CCACACGGCAGCCAGACA 62.624 66.667 13.30 0.00 0.00 3.41
2674 3335 1.555075 GTCCACCAGATAGAGGTTGCA 59.445 52.381 0.00 0.00 37.23 4.08
2794 3455 0.366871 GCACATGATGACACGACGAC 59.633 55.000 0.00 0.00 0.00 4.34
2795 3456 0.243636 AGCACATGATGACACGACGA 59.756 50.000 0.00 0.00 0.00 4.20
2796 3457 1.908065 TAGCACATGATGACACGACG 58.092 50.000 0.00 0.00 0.00 5.12
2797 3458 4.329801 TCAATTAGCACATGATGACACGAC 59.670 41.667 0.00 0.00 0.00 4.34
2839 3500 1.035932 GTAGGTAGCGAGGCCAGTGA 61.036 60.000 5.01 0.00 0.00 3.41
2847 3513 1.066587 GCAGCAGGTAGGTAGCGAG 59.933 63.158 0.00 0.00 0.00 5.03
2849 3515 0.108138 AAAGCAGCAGGTAGGTAGCG 60.108 55.000 0.00 0.00 0.00 4.26
2959 3632 8.646004 AGTAAGATTGCATACACTATCATCAGT 58.354 33.333 0.00 0.00 0.00 3.41
2986 3659 0.582960 CGTACGAACACCCAACAACC 59.417 55.000 10.44 0.00 0.00 3.77
3029 3702 2.052590 GCACGTTCGCAAAAGCGA 60.053 55.556 8.63 8.63 40.60 4.93
3215 4027 2.935955 GAAGTCGTGGGCGTTGTG 59.064 61.111 0.00 0.00 39.49 3.33
3286 4098 3.838271 GCGGCGAGGATCTGGACA 61.838 66.667 12.98 0.00 0.00 4.02
3316 4128 3.644884 ACCATAGTGCGTAGTAGATGC 57.355 47.619 0.00 0.00 40.84 3.91
3317 4129 4.299155 CCAACCATAGTGCGTAGTAGATG 58.701 47.826 0.00 0.00 0.00 2.90
3318 4130 3.243771 GCCAACCATAGTGCGTAGTAGAT 60.244 47.826 0.00 0.00 0.00 1.98
3319 4131 2.100252 GCCAACCATAGTGCGTAGTAGA 59.900 50.000 0.00 0.00 0.00 2.59
3320 4132 2.159156 TGCCAACCATAGTGCGTAGTAG 60.159 50.000 0.00 0.00 0.00 2.57
3321 4133 1.826096 TGCCAACCATAGTGCGTAGTA 59.174 47.619 0.00 0.00 0.00 1.82
3335 4150 3.348236 CTGTCTGCCAGTGCCAAC 58.652 61.111 0.00 0.00 36.37 3.77
3344 4159 1.827969 ACCTGATGACTACTGTCTGCC 59.172 52.381 0.00 0.00 43.29 4.85
3346 4161 4.489810 GTTCACCTGATGACTACTGTCTG 58.510 47.826 0.00 0.00 43.29 3.51
3347 4162 3.191581 CGTTCACCTGATGACTACTGTCT 59.808 47.826 0.00 0.00 43.29 3.41
3348 4163 3.190744 TCGTTCACCTGATGACTACTGTC 59.809 47.826 0.00 0.00 43.20 3.51
3349 4164 3.154710 TCGTTCACCTGATGACTACTGT 58.845 45.455 0.00 0.00 36.92 3.55
3350 4165 3.850122 TCGTTCACCTGATGACTACTG 57.150 47.619 0.00 0.00 36.92 2.74
3351 4166 4.017126 TGATCGTTCACCTGATGACTACT 58.983 43.478 0.00 0.00 36.92 2.57
3352 4167 4.106197 GTGATCGTTCACCTGATGACTAC 58.894 47.826 14.46 0.00 45.45 2.73
3353 4168 4.371855 GTGATCGTTCACCTGATGACTA 57.628 45.455 14.46 0.00 45.45 2.59
3354 4169 3.238108 GTGATCGTTCACCTGATGACT 57.762 47.619 14.46 0.00 45.45 3.41
3410 4319 1.979155 CGTGTGCTCTCCCCTCAGA 60.979 63.158 0.00 0.00 0.00 3.27
3935 4862 1.448497 GTTGTCCCGGAACCTGTCA 59.552 57.895 0.73 0.00 0.00 3.58
3959 4886 1.927895 CCTCCGTCTGCATGTAGTTC 58.072 55.000 10.80 4.95 0.00 3.01
4111 5063 1.191535 GGGAAAATTGTACAGCCCCC 58.808 55.000 0.00 0.62 0.00 5.40
4221 5173 1.672356 GCACGTCAATGCCTCCAGT 60.672 57.895 0.00 0.00 39.86 4.00
4263 5216 9.878599 TGAATTCTCATTTTTCTTTTCTCGTAC 57.121 29.630 7.05 0.00 0.00 3.67
4295 5248 2.612212 GCAACCTACAACCACCGATATG 59.388 50.000 0.00 0.00 0.00 1.78
4305 5258 6.967199 GCATAGACAATTAAGCAACCTACAAC 59.033 38.462 0.00 0.00 0.00 3.32
4308 5261 6.927294 AGCATAGACAATTAAGCAACCTAC 57.073 37.500 0.00 0.00 0.00 3.18
4312 5265 6.194796 TCCAAGCATAGACAATTAAGCAAC 57.805 37.500 0.00 0.00 0.00 4.17
4328 5281 1.550072 TGACGAGTGATCATCCAAGCA 59.450 47.619 0.00 0.00 0.00 3.91
4341 5294 1.400494 GGCAAACACTTGTTGACGAGT 59.600 47.619 0.00 0.00 41.13 4.18
4416 5373 2.829720 AGGGAATTATATCGCGGTGCTA 59.170 45.455 6.13 0.00 37.35 3.49
4482 5439 5.934043 AGAAACTCTTTATTTTGCAATGGCC 59.066 36.000 0.00 0.00 40.13 5.36
4520 5477 9.250624 TCGGGTGAACAATAAAACAAAATTTAG 57.749 29.630 0.00 0.00 0.00 1.85
4545 5502 2.223294 GCTCTTGAGCTCACATGCATTC 60.223 50.000 18.03 0.00 34.99 2.67
4730 5688 6.318648 TCATCGTTGGATTTCAATTTCCTAGG 59.681 38.462 0.82 0.82 37.73 3.02
4741 5699 6.251376 GTGTAATTGCTTCATCGTTGGATTTC 59.749 38.462 0.00 0.00 0.00 2.17
4829 5853 3.323403 AGGGATCTGGATCGTGATTCTTC 59.677 47.826 4.75 0.00 38.69 2.87
4867 5891 9.369904 CCCATGTTTTTAATTAGAGGTGATTTG 57.630 33.333 0.00 0.00 0.00 2.32
4868 5892 9.100197 ACCCATGTTTTTAATTAGAGGTGATTT 57.900 29.630 0.00 0.00 0.00 2.17
4870 5894 8.116026 AGACCCATGTTTTTAATTAGAGGTGAT 58.884 33.333 0.00 0.00 0.00 3.06
4871 5895 7.466804 AGACCCATGTTTTTAATTAGAGGTGA 58.533 34.615 0.00 0.00 0.00 4.02
4872 5896 7.393234 TGAGACCCATGTTTTTAATTAGAGGTG 59.607 37.037 0.00 0.00 0.00 4.00
4873 5897 7.466804 TGAGACCCATGTTTTTAATTAGAGGT 58.533 34.615 0.00 0.00 0.00 3.85
4874 5898 7.938140 TGAGACCCATGTTTTTAATTAGAGG 57.062 36.000 0.00 0.00 0.00 3.69
4892 5917 5.105997 CCATTCTTTTTGACCTCATGAGACC 60.106 44.000 24.62 14.70 0.00 3.85
4898 5923 7.601705 TTTCTTCCATTCTTTTTGACCTCAT 57.398 32.000 0.00 0.00 0.00 2.90
4946 5971 4.598022 TCCATCAAACTGGCAATGTATCA 58.402 39.130 0.00 0.00 36.16 2.15
5036 6061 2.068821 TCTGATGCTCTCTGGGCCC 61.069 63.158 17.59 17.59 0.00 5.80
5041 6066 4.388378 TTGATCAGTCTGATGCTCTCTG 57.612 45.455 20.20 0.00 37.20 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.