AutoCloner

Multiple sequence alignment - TraesCS6B01G341200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G341200	chr6B	100.000	2708	0	0	1	2708	600596250	600598957	0.000000e+00	5001.0
1	TraesCS6B01G341200	chr6B	80.422	1042	169	22	885	1903	600786279	600785250	0.000000e+00	761.0
2	TraesCS6B01G341200	chr6B	79.507	893	146	26	938	1810	601081746	601080871	3.860000e-168	601.0
3	TraesCS6B01G341200	chr6B	82.446	507	53	15	247	750	601082336	601081863	6.980000e-111	411.0
4	TraesCS6B01G341200	chr6B	75.606	742	155	17	922	1660	599916658	599917376	7.180000e-91	344.0
5	TraesCS6B01G341200	chr6B	77.609	527	77	21	274	772	599915987	599916500	5.710000e-72	281.0
6	TraesCS6B01G341200	chr6B	80.723	332	39	9	226	544	600787322	600787003	4.510000e-58	235.0
7	TraesCS6B01G341200	chr6B	87.709	179	22	0	566	744	600786949	600786771	2.730000e-50	209.0
8	TraesCS6B01G341200	chr6A	92.004	1976	101	18	28	1973	547280184	547278236	0.000000e+00	2721.0
9	TraesCS6B01G341200	chr6A	90.110	728	47	16	1989	2708	12139857	12140567	0.000000e+00	922.0
10	TraesCS6B01G341200	chr6A	80.751	1039	160	21	885	1910	547593426	547592415	0.000000e+00	774.0
11	TraesCS6B01G341200	chr6A	78.958	480	72	18	316	779	546990725	546991191	1.580000e-77	300.0
12	TraesCS6B01G341200	chr6A	81.707	328	39	8	226	544	547594777	547594462	1.240000e-63	254.0
13	TraesCS6B01G341200	chr2B	99.028	720	7	0	1989	2708	623518762	623519481	0.000000e+00	1291.0
14	TraesCS6B01G341200	chrUn	98.889	720	8	0	1989	2708	326757884	326758603	0.000000e+00	1286.0
15	TraesCS6B01G341200	chrUn	98.889	720	8	0	1989	2708	381260541	381259822	0.000000e+00	1286.0
16	TraesCS6B01G341200	chr3B	98.611	720	10	0	1989	2708	168306059	168305340	0.000000e+00	1275.0
17	TraesCS6B01G341200	chr3B	85.733	771	49	29	1985	2708	806135811	806135055	0.000000e+00	758.0
18	TraesCS6B01G341200	chr6D	77.726	1715	262	69	226	1906	401151508	401149880	0.000000e+00	941.0
19	TraesCS6B01G341200	chr6D	78.631	482	68	22	316	775	400794285	400794753	1.230000e-73	287.0
20	TraesCS6B01G341200	chr1B	89.466	731	51	15	1986	2708	470709503	470710215	0.000000e+00	900.0
21	TraesCS6B01G341200	chr2D	91.538	260	17	1	1989	2243	633234254	633233995	1.190000e-93	353.0
22	TraesCS6B01G341200	chr5A	83.590	390	30	11	1989	2370	328545497	328545134	4.320000e-88	335.0
23	TraesCS6B01G341200	chr1D	87.075	294	28	5	2051	2337	324339114	324338824	9.350000e-85	324.0
24	TraesCS6B01G341200	chr3D	82.482	411	23	17	1989	2370	208845404	208845014	5.630000e-82	315.0
25	TraesCS6B01G341200	chr2A	93.893	131	8	0	2425	2555	37027360	37027490	5.910000e-47	198.0
26	TraesCS6B01G341200	chr2A	97.701	87	2	0	1988	2074	37024150	37024236	1.680000e-32	150.0
27	TraesCS6B01G341200	chr1A	93.893	131	8	0	2425	2555	561617365	561617235	5.910000e-47	198.0
28	TraesCS6B01G341200	chr5B	94.068	118	7	0	2572	2689	261356641	261356524	2.140000e-41	180.0
29	TraesCS6B01G341200	chr7A	93.162	117	8	0	2573	2689	629088086	629088202	3.580000e-39	172.0
30	TraesCS6B01G341200	chr7B	85.535	159	14	5	2213	2370	263156366	263156216	1.000000e-34	158.0
31	TraesCS6B01G341200	chr5D	89.655	58	2	4	2316	2372	493411307	493411253	1.350000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G341200	chr6B	600596250	600598957	2707	False	5001.000000	5001	100.000000	1	2708	1	chr6B.!!$F1	2707
1	TraesCS6B01G341200	chr6B	601080871	601082336	1465	True	506.000000	601	80.976500	247	1810	2	chr6B.!!$R2	1563
2	TraesCS6B01G341200	chr6B	600785250	600787322	2072	True	401.666667	761	82.951333	226	1903	3	chr6B.!!$R1	1677
3	TraesCS6B01G341200	chr6B	599915987	599917376	1389	False	312.500000	344	76.607500	274	1660	2	chr6B.!!$F2	1386
4	TraesCS6B01G341200	chr6A	547278236	547280184	1948	True	2721.000000	2721	92.004000	28	1973	1	chr6A.!!$R1	1945
5	TraesCS6B01G341200	chr6A	12139857	12140567	710	False	922.000000	922	90.110000	1989	2708	1	chr6A.!!$F1	719
6	TraesCS6B01G341200	chr6A	547592415	547594777	2362	True	514.000000	774	81.229000	226	1910	2	chr6A.!!$R2	1684
7	TraesCS6B01G341200	chr2B	623518762	623519481	719	False	1291.000000	1291	99.028000	1989	2708	1	chr2B.!!$F1	719
8	TraesCS6B01G341200	chrUn	326757884	326758603	719	False	1286.000000	1286	98.889000	1989	2708	1	chrUn.!!$F1	719
9	TraesCS6B01G341200	chrUn	381259822	381260541	719	True	1286.000000	1286	98.889000	1989	2708	1	chrUn.!!$R1	719
10	TraesCS6B01G341200	chr3B	168305340	168306059	719	True	1275.000000	1275	98.611000	1989	2708	1	chr3B.!!$R1	719
11	TraesCS6B01G341200	chr3B	806135055	806135811	756	True	758.000000	758	85.733000	1985	2708	1	chr3B.!!$R2	723
12	TraesCS6B01G341200	chr6D	401149880	401151508	1628	True	941.000000	941	77.726000	226	1906	1	chr6D.!!$R1	1680
13	TraesCS6B01G341200	chr1B	470709503	470710215	712	False	900.000000	900	89.466000	1986	2708	1	chr1B.!!$F1	722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
368	401	0.039346	TGTACGTGTTCGGCGATTCA	60.039	50.0	11.76	10.9	41.85	2.57	F
1144	2105	0.040058	TGAGGTACCGGCCTTCTACA	59.960	55.0	6.18	0.0	39.34	2.74	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1492	2461	0.181350	GTATTGGGGGAGCCACAGAG	59.819	60.000	0.0	0.0	38.6	3.35	R
1987	2997	1.676014	GCGCAACCAGGTCATCTAGTT	60.676	52.381	0.3	0.0	0.0	2.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	2.872557	CTGGCGCCACTGTGAATG	59.127	61.111	29.03	9.73	0.00	2.67
18	19	2.672651	TGGCGCCACTGTGAATGG	60.673	61.111	29.03	0.00	40.50	3.16
65	66	1.497991	TCACTCTTTCAACGGCTTCG	58.502	50.000	0.00	0.00	40.22	3.79
76	77	0.317479	ACGGCTTCGCTGTTAAGAGT	59.683	50.000	1.12	0.00	46.97	3.24
118	119	1.000955	GGCCATAACCGATCGACATCT	59.999	52.381	18.66	0.00	0.00	2.90
119	120	2.329379	GCCATAACCGATCGACATCTC	58.671	52.381	18.66	0.00	0.00	2.75
120	121	2.585845	CCATAACCGATCGACATCTCG	58.414	52.381	18.66	0.00	41.65	4.04
121	122	2.031069	CCATAACCGATCGACATCTCGT	60.031	50.000	18.66	0.17	41.02	4.18
197	198	0.750249	TTGCTCCGACTCACTCACAA	59.250	50.000	0.00	0.00	0.00	3.33
270	271	2.448453	AGGCTCTCGTGCTACTAGTTT	58.552	47.619	0.00	0.00	0.00	2.66
286	287	7.221838	GCTACTAGTTTCAGTGTTCATCATCTC	59.778	40.741	0.00	0.00	0.00	2.75
365	398	1.444895	GGTGTACGTGTTCGGCGAT	60.445	57.895	11.76	0.00	41.85	4.58
368	401	0.039346	TGTACGTGTTCGGCGATTCA	60.039	50.000	11.76	10.90	41.85	2.57
494	548	0.470766	TCAGCAACGGGTACAACCTT	59.529	50.000	0.00	0.00	38.64	3.50
544	628	4.214332	GGCTCTTCTTCATCGTGTCTTTTT	59.786	41.667	0.00	0.00	0.00	1.94
546	630	6.073222	GGCTCTTCTTCATCGTGTCTTTTTAA	60.073	38.462	0.00	0.00	0.00	1.52
547	631	7.012358	GCTCTTCTTCATCGTGTCTTTTTAAG	58.988	38.462	0.00	0.00	0.00	1.85
550	634	8.889717	TCTTCTTCATCGTGTCTTTTTAAGTTT	58.110	29.630	0.00	0.00	0.00	2.66
551	635	8.835467	TTCTTCATCGTGTCTTTTTAAGTTTG	57.165	30.769	0.00	0.00	0.00	2.93
552	636	8.203937	TCTTCATCGTGTCTTTTTAAGTTTGA	57.796	30.769	0.00	0.00	0.00	2.69
553	637	8.670135	TCTTCATCGTGTCTTTTTAAGTTTGAA	58.330	29.630	0.00	0.00	0.00	2.69
554	638	8.609478	TTCATCGTGTCTTTTTAAGTTTGAAC	57.391	30.769	0.00	0.00	0.00	3.18
555	639	7.981142	TCATCGTGTCTTTTTAAGTTTGAACT	58.019	30.769	0.00	0.00	42.04	3.01
574	692	7.038154	TGAACTTTGAACCCATGAAACTAAG	57.962	36.000	0.00	0.00	0.00	2.18
724	842	1.661821	GGATCCGGCATTCTCGACG	60.662	63.158	0.00	0.00	37.07	5.12
884	1845	6.721704	TGTCTATATGTCTGCATCTGAGTT	57.278	37.500	0.00	0.00	36.58	3.01
885	1846	6.743110	TGTCTATATGTCTGCATCTGAGTTC	58.257	40.000	0.00	0.00	36.58	3.01
886	1847	6.548993	TGTCTATATGTCTGCATCTGAGTTCT	59.451	38.462	0.00	0.00	36.58	3.01
913	1874	9.538508	AGTAACTTTTACTAACATCGTTCTTGT	57.461	29.630	0.00	0.00	0.00	3.16
914	1875	9.577003	GTAACTTTTACTAACATCGTTCTTGTG	57.423	33.333	0.00	0.00	0.00	3.33
916	1877	7.848491	ACTTTTACTAACATCGTTCTTGTGTC	58.152	34.615	0.00	0.00	0.00	3.67
936	1897	2.348362	TCGTGTGCATCGATTGATTGAC	59.652	45.455	11.76	0.00	30.49	3.18
976	1937	2.033141	TGAGCAAGCAGGTGGAGC	59.967	61.111	0.00	0.00	0.00	4.70
1120	2081	0.790814	CTTCCTGAAGAAACGGTCGC	59.209	55.000	0.45	0.00	40.79	5.19
1122	2083	1.004918	CCTGAAGAAACGGTCGCCT	60.005	57.895	0.00	0.00	0.00	5.52
1131	2092	0.393820	AACGGTCGCCTTTTGAGGTA	59.606	50.000	0.00	0.00	0.00	3.08
1144	2105	0.040058	TGAGGTACCGGCCTTCTACA	59.960	55.000	6.18	0.00	39.34	2.74
1227	2188	4.379174	GGTGTCATCAACGTGGCT	57.621	55.556	0.00	0.00	0.00	4.75
1275	2239	3.769875	GAGATCCCCGTTCGGCGAC	62.770	68.421	10.16	4.06	44.77	5.19
1492	2461	3.591254	AAGCTCAACGCGGAGACCC	62.591	63.158	12.47	0.00	45.59	4.46
1497	2466	2.600769	AACGCGGAGACCCTCTGT	60.601	61.111	12.47	0.00	38.95	3.41
1552	2524	0.320683	CGAGCACATGTTCTGGGACA	60.321	55.000	1.66	0.00	0.00	4.02
1553	2525	1.676916	CGAGCACATGTTCTGGGACAT	60.677	52.381	1.66	0.00	40.76	3.06
1629	2601	1.519455	GGTGGAGCGAGGATTCACG	60.519	63.158	0.00	0.00	0.00	4.35
1630	2602	1.215647	GTGGAGCGAGGATTCACGT	59.784	57.895	0.00	0.00	0.00	4.49
1670	2642	1.201855	GCTGCTTCTTGATGACGAACG	60.202	52.381	0.00	0.00	0.00	3.95
1717	2710	1.206849	TGAGTGTGTGAGTGTCAAGCA	59.793	47.619	0.00	0.00	0.00	3.91
1814	2824	3.190874	GCATGTGCTCAGTTAGTAGTCC	58.809	50.000	0.00	0.00	38.21	3.85
1816	2826	1.201647	TGTGCTCAGTTAGTAGTCCGC	59.798	52.381	0.00	0.00	0.00	5.54
1881	2891	2.202440	CGTGGAGGTGCGTCGTAG	60.202	66.667	0.00	0.00	0.00	3.51
1889	2899	1.445582	GTGCGTCGTAGAAGTGGGG	60.446	63.158	0.00	0.00	39.69	4.96
1891	2901	0.608856	TGCGTCGTAGAAGTGGGGTA	60.609	55.000	0.00	0.00	39.69	3.69
1912	2922	7.829706	GGGGTAGATTGTTACAATCTCTTCTTT	59.170	37.037	34.82	17.87	38.00	2.52
1913	2923	8.669243	GGGTAGATTGTTACAATCTCTTCTTTG	58.331	37.037	34.82	0.00	38.00	2.77
1914	2924	8.669243	GGTAGATTGTTACAATCTCTTCTTTGG	58.331	37.037	34.82	0.00	38.00	3.28
1915	2925	9.436957	GTAGATTGTTACAATCTCTTCTTTGGA	57.563	33.333	34.82	17.37	38.00	3.53
1918	2928	7.452880	TTGTTACAATCTCTTCTTTGGATGG	57.547	36.000	0.00	0.00	0.00	3.51
1919	2929	5.415701	TGTTACAATCTCTTCTTTGGATGGC	59.584	40.000	0.00	0.00	0.00	4.40
1921	2931	4.607239	ACAATCTCTTCTTTGGATGGCAT	58.393	39.130	0.00	0.00	0.00	4.40
1922	2932	5.759059	ACAATCTCTTCTTTGGATGGCATA	58.241	37.500	0.00	0.00	0.00	3.14
1924	2934	6.264744	ACAATCTCTTCTTTGGATGGCATATG	59.735	38.462	0.00	0.00	0.00	1.78
1925	2935	4.139786	TCTCTTCTTTGGATGGCATATGC	58.860	43.478	19.79	19.79	41.14	3.14
1958	2968	7.615403	AGATTGTCAGAGCTTCTACAATTACA	58.385	34.615	17.36	0.00	41.37	2.41
1973	2983	6.619329	ACAATTACAATGGGCTAATTTGGT	57.381	33.333	0.00	0.00	0.00	3.67
1974	2984	6.639563	ACAATTACAATGGGCTAATTTGGTC	58.360	36.000	0.00	0.00	0.00	4.02
1975	2985	4.974368	TTACAATGGGCTAATTTGGTCG	57.026	40.909	0.00	0.00	0.00	4.79
1976	2986	2.802719	ACAATGGGCTAATTTGGTCGT	58.197	42.857	0.00	0.00	0.00	4.34
1977	2987	2.491693	ACAATGGGCTAATTTGGTCGTG	59.508	45.455	0.00	0.00	0.00	4.35
1978	2988	2.491693	CAATGGGCTAATTTGGTCGTGT	59.508	45.455	0.00	0.00	0.00	4.49
1979	2989	2.279935	TGGGCTAATTTGGTCGTGTT	57.720	45.000	0.00	0.00	0.00	3.32
1980	2990	2.588620	TGGGCTAATTTGGTCGTGTTT	58.411	42.857	0.00	0.00	0.00	2.83
1981	2991	3.752665	TGGGCTAATTTGGTCGTGTTTA	58.247	40.909	0.00	0.00	0.00	2.01
1982	2992	3.502979	TGGGCTAATTTGGTCGTGTTTAC	59.497	43.478	0.00	0.00	0.00	2.01
1983	2993	3.754850	GGGCTAATTTGGTCGTGTTTACT	59.245	43.478	0.00	0.00	0.00	2.24
1984	2994	4.216902	GGGCTAATTTGGTCGTGTTTACTT	59.783	41.667	0.00	0.00	0.00	2.24
1987	2997	7.361894	GGCTAATTTGGTCGTGTTTACTTTAA	58.638	34.615	0.00	0.00	0.00	1.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.693762	CCATTCACAGTGGCGCCAG	61.694	63.158	33.73	22.63	0.00	4.85
1	2	2.672651	CCATTCACAGTGGCGCCA	60.673	61.111	29.03	29.03	0.00	5.69
19	20	2.562912	GGAGGCGTGCATGTTGTG	59.437	61.111	7.93	0.00	0.00	3.33
20	21	3.049674	CGGAGGCGTGCATGTTGT	61.050	61.111	7.93	0.00	0.00	3.32
21	22	3.803082	CCGGAGGCGTGCATGTTG	61.803	66.667	7.93	0.00	46.14	3.33
65	66	5.526115	TGTGTAGTGTGTACTCTTAACAGC	58.474	41.667	0.00	0.00	38.36	4.40
120	121	4.993945	CAGCACGCACGCACGAAC	62.994	66.667	4.54	0.00	36.70	3.95
172	173	0.601311	GTGAGTCGGAGCAAAGCACT	60.601	55.000	0.00	0.00	0.00	4.40
257	258	4.295870	TGAACACTGAAACTAGTAGCACG	58.704	43.478	0.00	0.00	0.00	5.34
270	271	1.134699	GGCGGAGATGATGAACACTGA	60.135	52.381	0.00	0.00	0.00	3.41
383	416	0.391263	CCGGCAGGTACTTGAGGTTC	60.391	60.000	9.51	0.00	34.60	3.62
546	630	5.930837	TTCATGGGTTCAAAGTTCAAACT	57.069	34.783	0.00	0.00	42.04	2.66
547	631	6.106003	AGTTTCATGGGTTCAAAGTTCAAAC	58.894	36.000	0.00	0.00	0.00	2.93
550	634	6.831353	TCTTAGTTTCATGGGTTCAAAGTTCA	59.169	34.615	0.00	0.00	0.00	3.18
551	635	7.228706	TCTCTTAGTTTCATGGGTTCAAAGTTC	59.771	37.037	0.00	0.00	0.00	3.01
552	636	7.060421	TCTCTTAGTTTCATGGGTTCAAAGTT	58.940	34.615	0.00	0.00	0.00	2.66
553	637	6.601332	TCTCTTAGTTTCATGGGTTCAAAGT	58.399	36.000	0.00	0.00	0.00	2.66
554	638	7.229506	ACTTCTCTTAGTTTCATGGGTTCAAAG	59.770	37.037	0.00	0.00	0.00	2.77
555	639	7.060421	ACTTCTCTTAGTTTCATGGGTTCAAA	58.940	34.615	0.00	0.00	0.00	2.69
574	692	5.702865	TGCATTTCAGTTTGCATACTTCTC	58.297	37.500	7.11	0.00	43.54	2.87
664	782	2.168521	CACCGAAGCCTTTGAGGATCTA	59.831	50.000	0.00	0.00	37.67	1.98
724	842	4.996434	AGCAGCACTGACGGTGGC	62.996	66.667	16.14	11.43	45.44	5.01
870	1831	6.202516	AGTTACTAGAACTCAGATGCAGAC	57.797	41.667	0.00	0.00	0.00	3.51
874	1835	8.989653	AGTAAAAGTTACTAGAACTCAGATGC	57.010	34.615	0.00	0.00	0.00	3.91
909	1870	1.070821	ATCGATGCACACGACACAAG	58.929	50.000	17.66	0.00	42.37	3.16
910	1871	1.194322	CAATCGATGCACACGACACAA	59.806	47.619	17.66	0.00	42.37	3.33
911	1872	0.789601	CAATCGATGCACACGACACA	59.210	50.000	17.66	0.00	42.37	3.72
912	1873	1.067693	TCAATCGATGCACACGACAC	58.932	50.000	17.66	0.00	42.37	3.67
913	1874	2.008752	ATCAATCGATGCACACGACA	57.991	45.000	17.66	7.56	42.37	4.35
914	1875	2.348362	TCAATCAATCGATGCACACGAC	59.652	45.455	17.66	0.00	42.37	4.34
916	1877	2.537529	GGTCAATCAATCGATGCACACG	60.538	50.000	0.00	8.53	30.13	4.49
976	1937	3.121030	CTTGGTGGCCGCGAAGAG	61.121	66.667	30.81	10.22	0.00	2.85
1122	2083	1.061546	AGAAGGCCGGTACCTCAAAA	58.938	50.000	10.90	0.00	39.93	2.44
1492	2461	0.181350	GTATTGGGGGAGCCACAGAG	59.819	60.000	0.00	0.00	38.60	3.35
1497	2466	2.313427	GGTGGTATTGGGGGAGCCA	61.313	63.158	0.00	0.00	0.00	4.75
1498	2467	0.696485	TAGGTGGTATTGGGGGAGCC	60.696	60.000	0.00	0.00	0.00	4.70
1552	2524	2.438975	CTGGGTGCCGTGCATCAT	60.439	61.111	10.63	0.00	42.13	2.45
1553	2525	4.720902	CCTGGGTGCCGTGCATCA	62.721	66.667	10.63	7.68	42.13	3.07
1629	2601	3.841643	CTGCTTGAAATTGATGGGTGAC	58.158	45.455	0.00	0.00	0.00	3.67
1630	2602	2.231964	GCTGCTTGAAATTGATGGGTGA	59.768	45.455	0.00	0.00	0.00	4.02
1717	2710	5.248640	ACTGCTAACATAGAACAGCAACAT	58.751	37.500	0.00	0.00	43.02	2.71
1814	2824	1.263776	TGCAAGAAACAAAACGTGCG	58.736	45.000	0.00	0.00	42.43	5.34
1816	2826	6.899243	CCTTATTTTGCAAGAAACAAAACGTG	59.101	34.615	0.00	0.00	46.48	4.49
1881	2891	6.415573	AGATTGTAACAATCTACCCCACTTC	58.584	40.000	0.88	0.00	35.39	3.01
1889	2899	9.436957	TCCAAAGAAGAGATTGTAACAATCTAC	57.563	33.333	2.21	1.21	37.14	2.59
1891	2901	8.954350	CATCCAAAGAAGAGATTGTAACAATCT	58.046	33.333	15.84	15.84	39.53	2.40
1918	2928	4.455533	TGACAATCTATTTCCGGCATATGC	59.544	41.667	19.79	19.79	41.14	3.14
1919	2929	5.934043	TCTGACAATCTATTTCCGGCATATG	59.066	40.000	0.00	0.00	0.00	1.78
1921	2931	5.541845	CTCTGACAATCTATTTCCGGCATA	58.458	41.667	0.00	0.00	0.00	3.14
1922	2932	4.384056	CTCTGACAATCTATTTCCGGCAT	58.616	43.478	0.00	0.00	0.00	4.40
1924	2934	2.545946	GCTCTGACAATCTATTTCCGGC	59.454	50.000	0.00	0.00	0.00	6.13
1925	2935	4.065321	AGCTCTGACAATCTATTTCCGG	57.935	45.455	0.00	0.00	0.00	5.14
1926	2936	5.355596	AGAAGCTCTGACAATCTATTTCCG	58.644	41.667	0.00	0.00	0.00	4.30
1927	2937	7.268586	TGTAGAAGCTCTGACAATCTATTTCC	58.731	38.462	0.00	0.00	0.00	3.13
1928	2938	8.709386	TTGTAGAAGCTCTGACAATCTATTTC	57.291	34.615	3.79	0.00	0.00	2.17
1929	2939	9.678260	AATTGTAGAAGCTCTGACAATCTATTT	57.322	29.630	16.15	3.75	40.68	1.40
1931	2941	9.757227	GTAATTGTAGAAGCTCTGACAATCTAT	57.243	33.333	16.15	7.54	40.68	1.98
1932	2942	8.749354	TGTAATTGTAGAAGCTCTGACAATCTA	58.251	33.333	16.15	3.41	40.68	1.98
1933	2943	7.615403	TGTAATTGTAGAAGCTCTGACAATCT	58.385	34.615	16.15	4.27	40.68	2.40
1958	2968	2.802719	ACACGACCAAATTAGCCCATT	58.197	42.857	0.00	0.00	0.00	3.16
1977	2987	8.843885	ACCAGGTCATCTAGTTTAAAGTAAAC	57.156	34.615	4.37	3.22	46.36	2.01
1978	2988	9.280174	CAACCAGGTCATCTAGTTTAAAGTAAA	57.720	33.333	4.37	0.00	0.00	2.01
1979	2989	7.389607	GCAACCAGGTCATCTAGTTTAAAGTAA	59.610	37.037	4.37	0.00	0.00	2.24
1980	2990	6.877322	GCAACCAGGTCATCTAGTTTAAAGTA	59.123	38.462	0.00	2.82	0.00	2.24
1981	2991	5.705905	GCAACCAGGTCATCTAGTTTAAAGT	59.294	40.000	0.00	0.37	0.00	2.66
1982	2992	5.163854	CGCAACCAGGTCATCTAGTTTAAAG	60.164	44.000	0.00	0.00	0.00	1.85
1983	2993	4.693566	CGCAACCAGGTCATCTAGTTTAAA	59.306	41.667	0.00	0.00	0.00	1.52
1984	2994	4.250464	CGCAACCAGGTCATCTAGTTTAA	58.750	43.478	0.00	0.00	0.00	1.52
1987	2997	1.676014	GCGCAACCAGGTCATCTAGTT	60.676	52.381	0.30	0.00	0.00	2.24
2506	3585	3.319122	ACAATGAGAAGGTTGGTGCTTTC	59.681	43.478	0.00	0.00	0.00	2.62

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.