Multiple sequence alignment - TraesCS6B01G341100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G341100 chr6B 100.000 3446 0 0 1 3446 599914936 599918381 0.000000e+00 6364.0
1 TraesCS6B01G341100 chr6B 75.737 746 147 24 1723 2441 600597171 600597909 9.160000e-91 344.0
2 TraesCS6B01G341100 chr6B 75.093 803 159 28 1675 2448 600786293 600785503 1.530000e-88 337.0
3 TraesCS6B01G341100 chr6B 77.609 527 77 21 1052 1565 600596523 600597021 7.280000e-72 281.0
4 TraesCS6B01G341100 chr6B 77.918 317 47 12 987 1293 600787339 600787036 3.530000e-40 176.0
5 TraesCS6B01G341100 chr6A 87.601 3081 215 68 391 3406 546990036 546993014 0.000000e+00 3419.0
6 TraesCS6B01G341100 chr6A 82.182 550 56 18 2422 2960 547028647 547029165 5.280000e-118 435.0
7 TraesCS6B01G341100 chr6A 77.289 546 78 23 1048 1569 547279946 547279423 2.620000e-71 279.0
8 TraesCS6B01G341100 chr6A 78.549 317 45 12 987 1293 547594794 547594491 1.630000e-43 187.0
9 TraesCS6B01G341100 chr6A 89.630 135 11 2 2588 2719 547029172 547029306 5.910000e-38 169.0
10 TraesCS6B01G341100 chr6D 90.544 2316 100 39 400 2671 400793612 400795852 0.000000e+00 2953.0
11 TraesCS6B01G341100 chr6D 75.525 809 176 21 1650 2448 401150926 401150130 9.030000e-101 377.0
12 TraesCS6B01G341100 chr6D 84.663 163 13 8 320 471 400793195 400793356 5.960000e-33 152.0
13 TraesCS6B01G341100 chr6D 81.383 188 26 5 987 1174 401151525 401151347 9.970000e-31 145.0
14 TraesCS6B01G341100 chr2D 93.396 318 18 3 1 317 591553062 591553377 5.210000e-128 468.0
15 TraesCS6B01G341100 chr2D 93.082 318 20 1 1 318 109709426 109709111 6.740000e-127 464.0
16 TraesCS6B01G341100 chr2D 92.790 319 21 1 1 317 20073907 20073589 8.710000e-126 460.0
17 TraesCS6B01G341100 chr2D 92.744 317 21 1 1 317 38187128 38186814 1.130000e-124 457.0
18 TraesCS6B01G341100 chr2D 91.463 328 26 1 1 326 398353740 398353413 1.890000e-122 449.0
19 TraesCS6B01G341100 chr3D 93.060 317 22 0 1 317 250901750 250901434 6.740000e-127 464.0
20 TraesCS6B01G341100 chr1D 93.060 317 21 1 1 317 433383741 433383426 2.420000e-126 462.0
21 TraesCS6B01G341100 chr7D 92.744 317 23 0 1 317 154640444 154640128 3.130000e-125 459.0
22 TraesCS6B01G341100 chr7D 92.744 317 21 1 1 317 32560236 32559922 1.130000e-124 457.0
23 TraesCS6B01G341100 chr5B 86.885 61 8 0 1127 1187 643652440 643652380 6.170000e-08 69.4
24 TraesCS6B01G341100 chr5A 83.607 61 10 0 1127 1187 640926575 640926515 1.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G341100 chr6B 599914936 599918381 3445 False 6364.0 6364 100.0000 1 3446 1 chr6B.!!$F1 3445
1 TraesCS6B01G341100 chr6B 600596523 600597909 1386 False 312.5 344 76.6730 1052 2441 2 chr6B.!!$F2 1389
2 TraesCS6B01G341100 chr6B 600785503 600787339 1836 True 256.5 337 76.5055 987 2448 2 chr6B.!!$R1 1461
3 TraesCS6B01G341100 chr6A 546990036 546993014 2978 False 3419.0 3419 87.6010 391 3406 1 chr6A.!!$F1 3015
4 TraesCS6B01G341100 chr6A 547028647 547029306 659 False 302.0 435 85.9060 2422 2960 2 chr6A.!!$F2 538
5 TraesCS6B01G341100 chr6A 547279423 547279946 523 True 279.0 279 77.2890 1048 1569 1 chr6A.!!$R1 521
6 TraesCS6B01G341100 chr6D 400793195 400795852 2657 False 1552.5 2953 87.6035 320 2671 2 chr6D.!!$F1 2351
7 TraesCS6B01G341100 chr6D 401150130 401151525 1395 True 261.0 377 78.4540 987 2448 2 chr6D.!!$R1 1461

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.030504 TTGGTCGTGTTCGCGTTCTA 59.969 50.0 5.77 0.0 36.96 2.10 F
33 34 0.036765 GTTCTACATGTGCCCACCGA 60.037 55.0 9.11 0.0 0.00 4.69 F
89 90 0.038744 CACCCTGACATTCAAGGGCT 59.961 55.0 7.68 0.0 37.95 5.19 F
2184 3077 0.178873 TGGGGAGCTCCTACAACCTT 60.179 55.0 31.36 0.0 35.95 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 2461 1.267261 TGTGTTGTTTTATTCCGGGCG 59.733 47.619 0.00 0.0 0.00 6.13 R
1806 2681 1.741770 GTCGATGCCACGGCTCTTT 60.742 57.895 9.92 0.0 42.51 2.52 R
2416 3312 3.911661 AATCAGCTGCTTGAAGTTGAC 57.088 42.857 9.47 0.0 39.77 3.18 R
3053 3971 3.056465 ACGAAACACAAAACCCACAACAT 60.056 39.130 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.311710 TTGGTCGTGTTCGCGTTC 58.688 55.556 5.77 0.64 36.96 3.95
18 19 1.227031 TTGGTCGTGTTCGCGTTCT 60.227 52.632 5.77 0.00 36.96 3.01
19 20 0.030504 TTGGTCGTGTTCGCGTTCTA 59.969 50.000 5.77 0.00 36.96 2.10
20 21 0.661187 TGGTCGTGTTCGCGTTCTAC 60.661 55.000 5.77 1.10 36.96 2.59
21 22 0.661187 GGTCGTGTTCGCGTTCTACA 60.661 55.000 5.77 3.97 36.96 2.74
22 23 1.334054 GTCGTGTTCGCGTTCTACAT 58.666 50.000 5.77 0.00 36.96 2.29
23 24 1.057285 GTCGTGTTCGCGTTCTACATG 59.943 52.381 5.77 11.87 36.96 3.21
24 25 1.057636 CGTGTTCGCGTTCTACATGT 58.942 50.000 5.77 2.69 0.00 3.21
25 26 1.201661 CGTGTTCGCGTTCTACATGTG 60.202 52.381 9.11 0.00 0.00 3.21
26 27 0.787787 TGTTCGCGTTCTACATGTGC 59.212 50.000 9.11 1.33 0.00 4.57
27 28 0.094730 GTTCGCGTTCTACATGTGCC 59.905 55.000 9.11 0.00 0.00 5.01
28 29 1.017177 TTCGCGTTCTACATGTGCCC 61.017 55.000 9.11 0.00 0.00 5.36
29 30 1.739929 CGCGTTCTACATGTGCCCA 60.740 57.895 9.11 0.00 0.00 5.36
30 31 1.794222 GCGTTCTACATGTGCCCAC 59.206 57.895 9.11 0.00 0.00 4.61
31 32 1.644786 GCGTTCTACATGTGCCCACC 61.645 60.000 9.11 0.00 0.00 4.61
32 33 1.358725 CGTTCTACATGTGCCCACCG 61.359 60.000 9.11 0.00 0.00 4.94
33 34 0.036765 GTTCTACATGTGCCCACCGA 60.037 55.000 9.11 0.00 0.00 4.69
34 35 0.908910 TTCTACATGTGCCCACCGAT 59.091 50.000 9.11 0.00 0.00 4.18
35 36 0.464036 TCTACATGTGCCCACCGATC 59.536 55.000 9.11 0.00 0.00 3.69
36 37 0.177836 CTACATGTGCCCACCGATCA 59.822 55.000 9.11 0.00 0.00 2.92
37 38 0.177836 TACATGTGCCCACCGATCAG 59.822 55.000 9.11 0.00 0.00 2.90
38 39 2.124570 ATGTGCCCACCGATCAGC 60.125 61.111 0.00 0.00 0.00 4.26
39 40 2.970379 ATGTGCCCACCGATCAGCA 61.970 57.895 0.00 0.00 0.00 4.41
40 41 2.821366 GTGCCCACCGATCAGCAG 60.821 66.667 0.00 0.00 35.56 4.24
41 42 3.321648 TGCCCACCGATCAGCAGT 61.322 61.111 0.00 0.00 0.00 4.40
42 43 2.045926 GCCCACCGATCAGCAGTT 60.046 61.111 0.00 0.00 0.00 3.16
43 44 2.109126 GCCCACCGATCAGCAGTTC 61.109 63.158 0.00 0.00 0.00 3.01
44 45 1.811266 CCCACCGATCAGCAGTTCG 60.811 63.158 2.85 2.85 36.86 3.95
45 46 2.456119 CCACCGATCAGCAGTTCGC 61.456 63.158 4.22 0.00 42.91 4.70
46 47 2.125512 ACCGATCAGCAGTTCGCC 60.126 61.111 4.22 0.00 44.04 5.54
47 48 3.257561 CCGATCAGCAGTTCGCCG 61.258 66.667 4.22 0.00 44.04 6.46
48 49 2.202610 CGATCAGCAGTTCGCCGA 60.203 61.111 0.00 0.00 44.04 5.54
49 50 1.589993 CGATCAGCAGTTCGCCGAT 60.590 57.895 0.00 0.00 40.58 4.18
50 51 1.815212 CGATCAGCAGTTCGCCGATG 61.815 60.000 0.00 0.00 37.89 3.84
51 52 0.807667 GATCAGCAGTTCGCCGATGT 60.808 55.000 0.00 0.00 37.89 3.06
52 53 0.391661 ATCAGCAGTTCGCCGATGTT 60.392 50.000 0.00 0.00 44.04 2.71
53 54 0.245266 TCAGCAGTTCGCCGATGTTA 59.755 50.000 0.00 0.00 44.04 2.41
54 55 1.134818 TCAGCAGTTCGCCGATGTTAT 60.135 47.619 0.00 0.00 44.04 1.89
55 56 1.004610 CAGCAGTTCGCCGATGTTATG 60.005 52.381 0.00 0.00 44.04 1.90
56 57 1.134818 AGCAGTTCGCCGATGTTATGA 60.135 47.619 0.00 0.00 44.04 2.15
57 58 1.004927 GCAGTTCGCCGATGTTATGAC 60.005 52.381 0.00 0.00 32.94 3.06
58 59 1.255342 CAGTTCGCCGATGTTATGACG 59.745 52.381 0.00 0.00 0.00 4.35
59 60 1.133598 AGTTCGCCGATGTTATGACGA 59.866 47.619 0.00 0.00 0.00 4.20
60 61 1.921887 GTTCGCCGATGTTATGACGAA 59.078 47.619 0.00 0.00 37.21 3.85
61 62 2.281140 TCGCCGATGTTATGACGAAA 57.719 45.000 0.00 0.00 0.00 3.46
62 63 2.190161 TCGCCGATGTTATGACGAAAG 58.810 47.619 0.00 0.00 0.00 2.62
63 64 1.257936 CGCCGATGTTATGACGAAAGG 59.742 52.381 0.00 0.00 0.00 3.11
64 65 2.546778 GCCGATGTTATGACGAAAGGA 58.453 47.619 0.00 0.00 0.00 3.36
65 66 2.284417 GCCGATGTTATGACGAAAGGAC 59.716 50.000 0.00 0.00 0.00 3.85
66 67 3.782046 CCGATGTTATGACGAAAGGACT 58.218 45.455 0.00 0.00 0.00 3.85
67 68 3.551890 CCGATGTTATGACGAAAGGACTG 59.448 47.826 0.00 0.00 0.00 3.51
68 69 3.000322 CGATGTTATGACGAAAGGACTGC 60.000 47.826 0.00 0.00 0.00 4.40
69 70 2.695359 TGTTATGACGAAAGGACTGCC 58.305 47.619 0.00 0.00 0.00 4.85
70 71 2.007608 GTTATGACGAAAGGACTGCCC 58.992 52.381 0.00 0.00 33.31 5.36
71 72 1.271856 TATGACGAAAGGACTGCCCA 58.728 50.000 0.00 0.00 37.41 5.36
72 73 0.321653 ATGACGAAAGGACTGCCCAC 60.322 55.000 0.00 0.00 37.41 4.61
73 74 1.671379 GACGAAAGGACTGCCCACC 60.671 63.158 0.00 0.00 37.41 4.61
74 75 2.359975 CGAAAGGACTGCCCACCC 60.360 66.667 0.00 0.00 37.41 4.61
75 76 2.895424 CGAAAGGACTGCCCACCCT 61.895 63.158 0.00 0.00 37.41 4.34
76 77 1.303643 GAAAGGACTGCCCACCCTG 60.304 63.158 0.00 0.00 37.41 4.45
77 78 1.774217 AAAGGACTGCCCACCCTGA 60.774 57.895 0.00 0.00 37.41 3.86
78 79 2.069165 AAAGGACTGCCCACCCTGAC 62.069 60.000 0.00 0.00 37.41 3.51
79 80 3.249189 GGACTGCCCACCCTGACA 61.249 66.667 0.00 0.00 34.14 3.58
80 81 2.606587 GGACTGCCCACCCTGACAT 61.607 63.158 0.00 0.00 34.14 3.06
81 82 1.380302 GACTGCCCACCCTGACATT 59.620 57.895 0.00 0.00 0.00 2.71
82 83 0.678048 GACTGCCCACCCTGACATTC 60.678 60.000 0.00 0.00 0.00 2.67
83 84 1.379916 CTGCCCACCCTGACATTCA 59.620 57.895 0.00 0.00 0.00 2.57
84 85 0.251297 CTGCCCACCCTGACATTCAA 60.251 55.000 0.00 0.00 0.00 2.69
85 86 0.251297 TGCCCACCCTGACATTCAAG 60.251 55.000 0.00 0.00 0.00 3.02
86 87 0.967380 GCCCACCCTGACATTCAAGG 60.967 60.000 0.00 0.00 34.17 3.61
87 88 0.323725 CCCACCCTGACATTCAAGGG 60.324 60.000 6.19 6.19 39.32 3.95
88 89 0.967380 CCACCCTGACATTCAAGGGC 60.967 60.000 7.68 0.00 37.95 5.19
89 90 0.038744 CACCCTGACATTCAAGGGCT 59.961 55.000 7.68 0.00 37.95 5.19
90 91 0.779997 ACCCTGACATTCAAGGGCTT 59.220 50.000 7.68 0.00 37.95 4.35
91 92 1.147817 ACCCTGACATTCAAGGGCTTT 59.852 47.619 7.68 0.00 37.95 3.51
92 93 1.821136 CCCTGACATTCAAGGGCTTTC 59.179 52.381 0.00 0.00 31.44 2.62
93 94 1.470098 CCTGACATTCAAGGGCTTTCG 59.530 52.381 0.00 0.00 0.00 3.46
94 95 1.470098 CTGACATTCAAGGGCTTTCGG 59.530 52.381 0.00 0.00 0.00 4.30
95 96 1.202879 TGACATTCAAGGGCTTTCGGT 60.203 47.619 0.00 0.00 0.00 4.69
96 97 1.468914 GACATTCAAGGGCTTTCGGTC 59.531 52.381 0.00 0.00 0.00 4.79
97 98 0.811281 CATTCAAGGGCTTTCGGTCC 59.189 55.000 0.00 0.00 40.74 4.46
98 99 0.676782 ATTCAAGGGCTTTCGGTCCG 60.677 55.000 4.39 4.39 46.10 4.79
99 100 2.741486 TTCAAGGGCTTTCGGTCCGG 62.741 60.000 12.29 0.00 46.10 5.14
100 101 3.246880 AAGGGCTTTCGGTCCGGT 61.247 61.111 12.29 0.00 46.10 5.28
101 102 3.249837 AAGGGCTTTCGGTCCGGTC 62.250 63.158 12.29 0.00 46.10 4.79
102 103 3.703127 GGGCTTTCGGTCCGGTCT 61.703 66.667 12.29 0.00 0.00 3.85
103 104 2.125633 GGCTTTCGGTCCGGTCTC 60.126 66.667 12.29 0.00 0.00 3.36
104 105 2.647158 GGCTTTCGGTCCGGTCTCT 61.647 63.158 12.29 0.00 0.00 3.10
105 106 1.446272 GCTTTCGGTCCGGTCTCTG 60.446 63.158 12.29 0.00 0.00 3.35
106 107 1.446272 CTTTCGGTCCGGTCTCTGC 60.446 63.158 12.29 0.00 0.00 4.26
107 108 3.277211 TTTCGGTCCGGTCTCTGCG 62.277 63.158 12.29 0.00 0.00 5.18
109 110 4.477975 CGGTCCGGTCTCTGCGTC 62.478 72.222 2.34 0.00 0.00 5.19
110 111 3.371063 GGTCCGGTCTCTGCGTCA 61.371 66.667 0.00 0.00 0.00 4.35
111 112 2.126424 GTCCGGTCTCTGCGTCAC 60.126 66.667 0.00 0.00 0.00 3.67
112 113 3.371063 TCCGGTCTCTGCGTCACC 61.371 66.667 0.00 0.00 0.00 4.02
118 119 4.498520 CTCTGCGTCACCGGCGAT 62.499 66.667 9.30 0.00 33.68 4.58
119 120 4.794439 TCTGCGTCACCGGCGATG 62.794 66.667 9.30 0.00 33.68 3.84
123 124 3.554692 CGTCACCGGCGATGCTTC 61.555 66.667 9.30 0.00 0.00 3.86
133 134 2.892425 GATGCTTCGACTGCGGGG 60.892 66.667 0.00 0.00 38.28 5.73
134 135 4.473520 ATGCTTCGACTGCGGGGG 62.474 66.667 0.00 0.00 38.28 5.40
149 150 3.125520 GGGGGTGTTGAACATGTGT 57.874 52.632 0.00 0.00 0.00 3.72
150 151 2.279935 GGGGGTGTTGAACATGTGTA 57.720 50.000 0.00 0.00 0.00 2.90
151 152 1.883926 GGGGGTGTTGAACATGTGTAC 59.116 52.381 0.00 0.00 0.00 2.90
152 153 2.577700 GGGGTGTTGAACATGTGTACA 58.422 47.619 0.00 1.19 0.00 2.90
153 154 3.153919 GGGGTGTTGAACATGTGTACAT 58.846 45.455 0.00 0.00 36.96 2.29
166 167 6.986424 CATGTGTACATGTACGTAGGTATG 57.014 41.667 26.59 19.23 46.40 2.39
167 168 5.503662 TGTGTACATGTACGTAGGTATGG 57.496 43.478 26.59 0.00 38.85 2.74
168 169 4.338964 TGTGTACATGTACGTAGGTATGGG 59.661 45.833 26.59 0.00 38.85 4.00
169 170 4.339247 GTGTACATGTACGTAGGTATGGGT 59.661 45.833 26.59 0.89 38.85 4.51
170 171 4.955450 TGTACATGTACGTAGGTATGGGTT 59.045 41.667 26.59 2.32 38.85 4.11
171 172 5.421693 TGTACATGTACGTAGGTATGGGTTT 59.578 40.000 26.59 2.06 38.85 3.27
172 173 5.014808 ACATGTACGTAGGTATGGGTTTC 57.985 43.478 14.99 0.00 0.00 2.78
173 174 3.781079 TGTACGTAGGTATGGGTTTCG 57.219 47.619 0.00 0.00 0.00 3.46
174 175 3.088532 TGTACGTAGGTATGGGTTTCGT 58.911 45.455 0.00 0.00 0.00 3.85
175 176 4.265893 TGTACGTAGGTATGGGTTTCGTA 58.734 43.478 0.00 0.00 0.00 3.43
176 177 4.887071 TGTACGTAGGTATGGGTTTCGTAT 59.113 41.667 0.00 0.00 35.43 3.06
177 178 4.311816 ACGTAGGTATGGGTTTCGTATG 57.688 45.455 0.00 0.00 0.00 2.39
178 179 3.054878 CGTAGGTATGGGTTTCGTATGC 58.945 50.000 0.00 0.00 0.00 3.14
179 180 3.491276 CGTAGGTATGGGTTTCGTATGCA 60.491 47.826 0.00 0.00 0.00 3.96
180 181 3.194005 AGGTATGGGTTTCGTATGCAG 57.806 47.619 0.00 0.00 0.00 4.41
181 182 2.504175 AGGTATGGGTTTCGTATGCAGT 59.496 45.455 0.00 0.00 0.00 4.40
182 183 3.707611 AGGTATGGGTTTCGTATGCAGTA 59.292 43.478 0.00 0.00 0.00 2.74
183 184 3.805971 GGTATGGGTTTCGTATGCAGTAC 59.194 47.826 0.00 0.00 0.00 2.73
184 185 2.389962 TGGGTTTCGTATGCAGTACC 57.610 50.000 0.00 0.00 0.00 3.34
185 186 1.903860 TGGGTTTCGTATGCAGTACCT 59.096 47.619 0.00 0.00 0.00 3.08
186 187 2.277084 GGGTTTCGTATGCAGTACCTG 58.723 52.381 0.00 0.00 34.12 4.00
187 188 2.354403 GGGTTTCGTATGCAGTACCTGT 60.354 50.000 0.00 0.00 33.43 4.00
188 189 3.119029 GGGTTTCGTATGCAGTACCTGTA 60.119 47.826 0.00 0.00 33.43 2.74
189 190 4.110482 GGTTTCGTATGCAGTACCTGTAG 58.890 47.826 0.00 0.00 33.43 2.74
190 191 4.381292 GGTTTCGTATGCAGTACCTGTAGT 60.381 45.833 0.00 0.00 33.43 2.73
191 192 4.365899 TTCGTATGCAGTACCTGTAGTG 57.634 45.455 7.61 7.61 39.02 2.74
192 193 3.349927 TCGTATGCAGTACCTGTAGTGT 58.650 45.455 12.42 0.00 38.44 3.55
193 194 3.376234 TCGTATGCAGTACCTGTAGTGTC 59.624 47.826 12.42 6.76 38.44 3.67
194 195 3.377485 CGTATGCAGTACCTGTAGTGTCT 59.623 47.826 12.42 4.63 38.44 3.41
195 196 3.876274 ATGCAGTACCTGTAGTGTCTG 57.124 47.619 12.42 2.21 38.44 3.51
196 197 2.594131 TGCAGTACCTGTAGTGTCTGT 58.406 47.619 12.42 0.00 38.44 3.41
197 198 2.557056 TGCAGTACCTGTAGTGTCTGTC 59.443 50.000 12.42 0.00 38.44 3.51
198 199 2.820787 GCAGTACCTGTAGTGTCTGTCT 59.179 50.000 12.42 0.00 38.44 3.41
199 200 3.119779 GCAGTACCTGTAGTGTCTGTCTC 60.120 52.174 12.42 0.00 38.44 3.36
200 201 3.440872 CAGTACCTGTAGTGTCTGTCTCC 59.559 52.174 4.33 0.00 33.08 3.71
201 202 1.926108 ACCTGTAGTGTCTGTCTCCC 58.074 55.000 0.00 0.00 0.00 4.30
202 203 1.429687 ACCTGTAGTGTCTGTCTCCCT 59.570 52.381 0.00 0.00 0.00 4.20
203 204 2.096248 CCTGTAGTGTCTGTCTCCCTC 58.904 57.143 0.00 0.00 0.00 4.30
204 205 2.291282 CCTGTAGTGTCTGTCTCCCTCT 60.291 54.545 0.00 0.00 0.00 3.69
205 206 2.752354 CTGTAGTGTCTGTCTCCCTCTG 59.248 54.545 0.00 0.00 0.00 3.35
206 207 2.108425 TGTAGTGTCTGTCTCCCTCTGT 59.892 50.000 0.00 0.00 0.00 3.41
207 208 3.329814 TGTAGTGTCTGTCTCCCTCTGTA 59.670 47.826 0.00 0.00 0.00 2.74
208 209 3.748645 AGTGTCTGTCTCCCTCTGTAT 57.251 47.619 0.00 0.00 0.00 2.29
209 210 3.360867 AGTGTCTGTCTCCCTCTGTATG 58.639 50.000 0.00 0.00 0.00 2.39
210 211 3.093057 GTGTCTGTCTCCCTCTGTATGT 58.907 50.000 0.00 0.00 0.00 2.29
211 212 4.018324 AGTGTCTGTCTCCCTCTGTATGTA 60.018 45.833 0.00 0.00 0.00 2.29
212 213 4.096682 GTGTCTGTCTCCCTCTGTATGTAC 59.903 50.000 0.00 0.00 0.00 2.90
213 214 3.312973 GTCTGTCTCCCTCTGTATGTACG 59.687 52.174 0.00 0.00 0.00 3.67
214 215 3.054582 TCTGTCTCCCTCTGTATGTACGT 60.055 47.826 0.00 0.00 0.00 3.57
215 216 3.014623 TGTCTCCCTCTGTATGTACGTG 58.985 50.000 0.00 0.00 0.00 4.49
216 217 3.015327 GTCTCCCTCTGTATGTACGTGT 58.985 50.000 0.00 0.00 0.00 4.49
217 218 4.194640 GTCTCCCTCTGTATGTACGTGTA 58.805 47.826 0.00 0.00 0.00 2.90
218 219 4.820716 GTCTCCCTCTGTATGTACGTGTAT 59.179 45.833 0.00 0.00 0.00 2.29
219 220 5.049543 GTCTCCCTCTGTATGTACGTGTATC 60.050 48.000 0.00 0.00 0.00 2.24
220 221 5.045012 TCCCTCTGTATGTACGTGTATCT 57.955 43.478 0.00 0.00 0.00 1.98
221 222 5.443283 TCCCTCTGTATGTACGTGTATCTT 58.557 41.667 0.00 0.00 0.00 2.40
222 223 6.594744 TCCCTCTGTATGTACGTGTATCTTA 58.405 40.000 0.00 0.00 0.00 2.10
223 224 6.709397 TCCCTCTGTATGTACGTGTATCTTAG 59.291 42.308 0.00 0.00 0.00 2.18
224 225 6.072618 CCCTCTGTATGTACGTGTATCTTAGG 60.073 46.154 0.00 0.00 0.00 2.69
225 226 6.709397 CCTCTGTATGTACGTGTATCTTAGGA 59.291 42.308 0.00 0.00 0.00 2.94
226 227 7.095144 CCTCTGTATGTACGTGTATCTTAGGAG 60.095 44.444 0.00 0.00 0.00 3.69
227 228 7.503549 TCTGTATGTACGTGTATCTTAGGAGA 58.496 38.462 0.00 0.00 36.09 3.71
228 229 7.440556 TCTGTATGTACGTGTATCTTAGGAGAC 59.559 40.741 0.00 0.00 33.99 3.36
229 230 7.049754 TGTATGTACGTGTATCTTAGGAGACA 58.950 38.462 0.00 0.00 40.76 3.41
230 231 7.553760 TGTATGTACGTGTATCTTAGGAGACAA 59.446 37.037 3.65 0.00 43.89 3.18
231 232 6.432607 TGTACGTGTATCTTAGGAGACAAG 57.567 41.667 12.65 12.65 43.89 3.16
232 233 6.175471 TGTACGTGTATCTTAGGAGACAAGA 58.825 40.000 19.29 3.87 43.89 3.02
233 234 5.564048 ACGTGTATCTTAGGAGACAAGAC 57.436 43.478 19.29 1.45 43.89 3.01
234 235 5.008331 ACGTGTATCTTAGGAGACAAGACA 58.992 41.667 19.29 0.00 43.89 3.41
235 236 5.652891 ACGTGTATCTTAGGAGACAAGACAT 59.347 40.000 19.29 0.00 43.89 3.06
236 237 6.183360 ACGTGTATCTTAGGAGACAAGACATC 60.183 42.308 19.29 0.17 43.89 3.06
237 238 6.202937 GTGTATCTTAGGAGACAAGACATCG 58.797 44.000 3.65 0.00 43.89 3.84
238 239 4.927978 ATCTTAGGAGACAAGACATCGG 57.072 45.455 0.00 0.00 34.96 4.18
239 240 3.698289 TCTTAGGAGACAAGACATCGGT 58.302 45.455 0.00 0.00 0.00 4.69
240 241 3.695060 TCTTAGGAGACAAGACATCGGTC 59.305 47.826 0.00 0.00 44.66 4.79
241 242 6.941189 ATCTTAGGAGACAAGACATCGGTCG 61.941 48.000 0.00 0.00 40.96 4.79
248 249 3.771160 GACATCGGTCGCACCCCT 61.771 66.667 0.50 0.00 33.75 4.79
249 250 3.310860 GACATCGGTCGCACCCCTT 62.311 63.158 0.50 0.00 33.75 3.95
250 251 2.819595 CATCGGTCGCACCCCTTG 60.820 66.667 0.50 0.00 33.75 3.61
251 252 3.319198 ATCGGTCGCACCCCTTGT 61.319 61.111 0.50 0.00 33.75 3.16
252 253 1.985662 ATCGGTCGCACCCCTTGTA 60.986 57.895 0.50 0.00 33.75 2.41
253 254 2.234913 ATCGGTCGCACCCCTTGTAC 62.235 60.000 0.50 0.00 33.75 2.90
254 255 2.046604 GGTCGCACCCCTTGTACC 60.047 66.667 0.00 0.00 30.04 3.34
255 256 2.590114 GGTCGCACCCCTTGTACCT 61.590 63.158 0.00 0.00 33.04 3.08
256 257 1.259840 GGTCGCACCCCTTGTACCTA 61.260 60.000 0.00 0.00 33.04 3.08
257 258 0.828677 GTCGCACCCCTTGTACCTAT 59.171 55.000 0.00 0.00 0.00 2.57
258 259 2.034124 GTCGCACCCCTTGTACCTATA 58.966 52.381 0.00 0.00 0.00 1.31
259 260 2.631545 GTCGCACCCCTTGTACCTATAT 59.368 50.000 0.00 0.00 0.00 0.86
260 261 3.828451 GTCGCACCCCTTGTACCTATATA 59.172 47.826 0.00 0.00 0.00 0.86
261 262 4.465305 GTCGCACCCCTTGTACCTATATAT 59.535 45.833 0.00 0.00 0.00 0.86
262 263 5.653769 GTCGCACCCCTTGTACCTATATATA 59.346 44.000 0.00 0.00 0.00 0.86
263 264 6.323225 GTCGCACCCCTTGTACCTATATATAT 59.677 42.308 0.00 0.00 0.00 0.86
264 265 7.503566 GTCGCACCCCTTGTACCTATATATATA 59.496 40.741 2.49 2.49 0.00 0.86
265 266 8.229605 TCGCACCCCTTGTACCTATATATATAT 58.770 37.037 10.10 10.10 0.00 0.86
266 267 8.304596 CGCACCCCTTGTACCTATATATATATG 58.695 40.741 14.42 3.56 0.00 1.78
267 268 9.155785 GCACCCCTTGTACCTATATATATATGT 57.844 37.037 14.42 13.24 0.00 2.29
269 270 9.155785 ACCCCTTGTACCTATATATATATGTGC 57.844 37.037 14.42 15.72 0.00 4.57
270 271 8.304596 CCCCTTGTACCTATATATATATGTGCG 58.695 40.741 14.42 7.23 0.00 5.34
271 272 8.857098 CCCTTGTACCTATATATATATGTGCGT 58.143 37.037 14.42 7.84 0.00 5.24
276 277 9.823098 GTACCTATATATATATGTGCGTAGTGC 57.177 37.037 14.42 3.07 46.70 4.40
290 291 3.658351 GTAGTGCACGATCAATCAACC 57.342 47.619 12.01 0.00 0.00 3.77
291 292 2.183478 AGTGCACGATCAATCAACCA 57.817 45.000 12.01 0.00 0.00 3.67
292 293 2.715046 AGTGCACGATCAATCAACCAT 58.285 42.857 12.01 0.00 0.00 3.55
293 294 2.679837 AGTGCACGATCAATCAACCATC 59.320 45.455 12.01 0.00 0.00 3.51
294 295 1.665169 TGCACGATCAATCAACCATCG 59.335 47.619 0.00 0.00 44.06 3.84
295 296 1.933181 GCACGATCAATCAACCATCGA 59.067 47.619 7.50 0.00 41.61 3.59
296 297 2.545526 GCACGATCAATCAACCATCGAT 59.454 45.455 7.50 0.00 41.61 3.59
297 298 3.605461 GCACGATCAATCAACCATCGATG 60.605 47.826 18.76 18.76 41.61 3.84
298 299 2.545526 ACGATCAATCAACCATCGATGC 59.454 45.455 20.25 1.24 41.61 3.91
299 300 2.545106 CGATCAATCAACCATCGATGCA 59.455 45.455 20.25 3.59 41.61 3.96
300 301 3.187842 CGATCAATCAACCATCGATGCAT 59.812 43.478 20.25 0.00 41.61 3.96
301 302 4.668431 CGATCAATCAACCATCGATGCATC 60.668 45.833 20.25 17.10 41.61 3.91
302 303 3.543665 TCAATCAACCATCGATGCATCA 58.456 40.909 25.70 13.50 0.00 3.07
303 304 3.946558 TCAATCAACCATCGATGCATCAA 59.053 39.130 25.70 8.93 0.00 2.57
304 305 4.398673 TCAATCAACCATCGATGCATCAAA 59.601 37.500 25.70 13.78 0.00 2.69
305 306 5.068067 TCAATCAACCATCGATGCATCAAAT 59.932 36.000 25.70 15.40 0.00 2.32
306 307 4.556942 TCAACCATCGATGCATCAAATC 57.443 40.909 25.70 0.37 0.00 2.17
307 308 3.946558 TCAACCATCGATGCATCAAATCA 59.053 39.130 25.70 4.78 0.00 2.57
308 309 4.581409 TCAACCATCGATGCATCAAATCAT 59.419 37.500 25.70 6.85 0.00 2.45
309 310 5.068067 TCAACCATCGATGCATCAAATCATT 59.932 36.000 25.70 9.87 0.00 2.57
310 311 5.117355 ACCATCGATGCATCAAATCATTC 57.883 39.130 25.70 0.00 0.00 2.67
311 312 4.825634 ACCATCGATGCATCAAATCATTCT 59.174 37.500 25.70 0.00 0.00 2.40
312 313 5.048921 ACCATCGATGCATCAAATCATTCTC 60.049 40.000 25.70 0.00 0.00 2.87
313 314 5.181433 CCATCGATGCATCAAATCATTCTCT 59.819 40.000 25.70 0.00 0.00 3.10
314 315 6.370718 CCATCGATGCATCAAATCATTCTCTA 59.629 38.462 25.70 0.00 0.00 2.43
315 316 6.775939 TCGATGCATCAAATCATTCTCTAC 57.224 37.500 25.70 0.00 0.00 2.59
316 317 6.282930 TCGATGCATCAAATCATTCTCTACA 58.717 36.000 25.70 0.00 0.00 2.74
317 318 6.762661 TCGATGCATCAAATCATTCTCTACAA 59.237 34.615 25.70 0.00 0.00 2.41
318 319 6.849811 CGATGCATCAAATCATTCTCTACAAC 59.150 38.462 25.70 0.00 0.00 3.32
326 327 9.605275 TCAAATCATTCTCTACAACTATGAAGG 57.395 33.333 0.00 0.00 0.00 3.46
333 334 8.880991 TTCTCTACAACTATGAAGGAACTACT 57.119 34.615 0.00 0.00 38.49 2.57
378 381 5.284660 GCATGCGAAAGAGTTGACTATTTTG 59.715 40.000 0.00 12.11 37.50 2.44
387 390 9.574516 AAAGAGTTGACTATTTTGAAGTGGTAT 57.425 29.630 0.00 0.00 34.09 2.73
398 401 3.071479 TGAAGTGGTATCAGCCGTTTTC 58.929 45.455 0.00 0.00 0.00 2.29
416 728 6.801862 CCGTTTTCTTTATAAGAACTGCAAGG 59.198 38.462 1.55 0.93 46.53 3.61
512 851 2.428902 CAATGTGTTGCGCCACCG 60.429 61.111 9.38 0.00 34.35 4.94
532 874 2.233922 CGAGGAAGTGGTATTGGTCACT 59.766 50.000 0.00 0.00 45.06 3.41
585 927 1.895131 CCTTCCACTCAATTGTTGGGG 59.105 52.381 21.41 17.78 34.70 4.96
586 928 1.895131 CTTCCACTCAATTGTTGGGGG 59.105 52.381 21.41 15.79 34.70 5.40
590 935 2.299867 CCACTCAATTGTTGGGGGAAAG 59.700 50.000 16.71 3.04 36.33 2.62
593 938 3.897505 ACTCAATTGTTGGGGGAAAGAAG 59.102 43.478 5.13 0.00 34.70 2.85
599 944 2.137177 TTGGGGGAAAGAAGGGAGCG 62.137 60.000 0.00 0.00 0.00 5.03
627 975 4.688021 AGATCTTCTCGCTGTCATTTACC 58.312 43.478 0.00 0.00 0.00 2.85
629 977 2.832129 TCTTCTCGCTGTCATTTACCCT 59.168 45.455 0.00 0.00 0.00 4.34
659 1007 4.598257 ATCGCTTCACGGTCAAGG 57.402 55.556 0.00 0.00 43.89 3.61
676 1024 4.154347 GCTCACAGAGAGGCCCGG 62.154 72.222 0.00 0.00 44.86 5.73
677 1025 3.465403 CTCACAGAGAGGCCCGGG 61.465 72.222 19.09 19.09 40.84 5.73
704 1056 0.859232 GTTTGACATCTCGTGCGTGT 59.141 50.000 0.00 0.00 0.00 4.49
714 1066 2.309501 CGTGCGTGTGTGCTGATGA 61.310 57.895 0.00 0.00 35.36 2.92
715 1067 1.205064 GTGCGTGTGTGCTGATGAC 59.795 57.895 0.00 0.00 35.36 3.06
718 1070 1.337635 TGCGTGTGTGCTGATGACATA 60.338 47.619 0.00 0.00 35.36 2.29
719 1071 1.325640 GCGTGTGTGCTGATGACATAG 59.674 52.381 0.00 0.00 0.00 2.23
720 1072 2.610433 CGTGTGTGCTGATGACATAGT 58.390 47.619 0.00 0.00 0.00 2.12
721 1073 2.346545 CGTGTGTGCTGATGACATAGTG 59.653 50.000 0.00 0.00 0.00 2.74
722 1074 2.094894 GTGTGTGCTGATGACATAGTGC 59.905 50.000 0.00 0.00 0.00 4.40
723 1075 2.289569 TGTGTGCTGATGACATAGTGCA 60.290 45.455 5.66 5.66 0.00 4.57
724 1076 2.941064 GTGTGCTGATGACATAGTGCAT 59.059 45.455 11.07 0.00 32.98 3.96
725 1077 3.002042 GTGTGCTGATGACATAGTGCATC 59.998 47.826 11.07 0.00 40.92 3.91
726 1078 3.118519 TGTGCTGATGACATAGTGCATCT 60.119 43.478 11.07 0.00 41.08 2.90
727 1079 3.875727 GTGCTGATGACATAGTGCATCTT 59.124 43.478 11.07 0.00 41.08 2.40
728 1080 4.334759 GTGCTGATGACATAGTGCATCTTT 59.665 41.667 11.07 0.00 41.08 2.52
729 1081 4.945543 TGCTGATGACATAGTGCATCTTTT 59.054 37.500 0.00 0.00 41.08 2.27
730 1082 5.416639 TGCTGATGACATAGTGCATCTTTTT 59.583 36.000 0.00 0.00 41.08 1.94
777 1129 6.854892 GCATCGTATCTACCGCGTATAAATAT 59.145 38.462 4.92 0.00 0.00 1.28
817 1169 1.618837 GCTTGGACTCACAGGTAGACA 59.381 52.381 0.00 0.00 0.00 3.41
861 1213 2.224159 ATATTCCCGCGGGCATCCT 61.224 57.895 39.89 21.65 34.68 3.24
886 1238 0.249398 CTAACCGCCTACCTTGCACT 59.751 55.000 0.00 0.00 0.00 4.40
939 1300 2.420890 GGAGCAGCCCGATCTGAG 59.579 66.667 7.86 0.00 36.19 3.35
947 1308 0.460987 GCCCGATCTGAGTCCTGTTG 60.461 60.000 0.00 0.00 0.00 3.33
1032 1396 1.293179 GGTGTGCAATGGAAAGGCC 59.707 57.895 0.00 0.00 37.10 5.19
1493 1963 2.508663 GTCAACTACGCCTCCGGC 60.509 66.667 0.00 0.00 46.75 6.13
1583 2073 7.228706 TCCAAAGAAATCAGTTGGAGTTACTTC 59.771 37.037 12.16 0.00 44.57 3.01
1625 2468 1.218047 CATCTGTCTTTCGCCCGGA 59.782 57.895 0.73 0.00 0.00 5.14
1637 2480 1.536331 TCGCCCGGAATAAAACAACAC 59.464 47.619 0.73 0.00 0.00 3.32
1692 2553 4.229096 TCGCATTTGTTCATCTTTTCTGC 58.771 39.130 0.00 0.00 0.00 4.26
1696 2557 5.610982 GCATTTGTTCATCTTTTCTGCGTTG 60.611 40.000 0.00 0.00 0.00 4.10
1854 2744 3.245984 TGTCCAAGTCCCTCTTCCTCATA 60.246 47.826 0.00 0.00 33.63 2.15
2184 3077 0.178873 TGGGGAGCTCCTACAACCTT 60.179 55.000 31.36 0.00 35.95 3.50
2232 3125 2.281276 GCCGGGTTCAAGGACGTT 60.281 61.111 2.18 0.00 0.00 3.99
2360 3256 4.351054 CACCCAGGCCACCTCCAC 62.351 72.222 5.01 0.00 0.00 4.02
2434 3330 1.220529 CGTCAACTTCAAGCAGCTGA 58.779 50.000 20.43 0.00 0.00 4.26
2466 3362 2.630317 GCGATCGAGGCATTGCAG 59.370 61.111 21.57 1.38 33.77 4.41
2481 3377 3.112075 CAGCGCACGGTCACGATT 61.112 61.111 11.47 0.00 44.60 3.34
2507 3403 6.365247 TGTCGTCAGCTCTTAATTTAGTTGTC 59.635 38.462 0.00 0.00 0.00 3.18
2525 3421 6.112734 AGTTGTCAGTGTTCACTGTTTGATA 58.887 36.000 25.52 8.68 38.75 2.15
2545 3442 2.200955 AGAGGGAGGGAAAAGATGTCC 58.799 52.381 0.00 0.00 0.00 4.02
2599 3499 8.093307 GTGGAGATGCAATAGAATCATAGAGAA 58.907 37.037 0.00 0.00 31.60 2.87
2640 3541 5.164100 CGATTTTATGTTCAAACAAAGCGGG 60.164 40.000 7.98 0.00 43.03 6.13
2642 3543 0.318614 ATGTTCAAACAAAGCGGGCG 60.319 50.000 0.00 0.00 43.03 6.13
2659 3560 0.030235 GCGAATGGCCCGAAAATACC 59.970 55.000 0.00 0.00 34.80 2.73
2664 3565 1.882308 TGGCCCGAAAATACCCTCTA 58.118 50.000 0.00 0.00 0.00 2.43
2682 3583 8.208575 ACCCTCTAGAATAAAAGAAGTGAAGT 57.791 34.615 0.00 0.00 0.00 3.01
2722 3626 2.438868 TGTGTGATCAGTGAACTCGG 57.561 50.000 0.00 0.00 0.00 4.63
2726 3630 2.364002 TGTGATCAGTGAACTCGGTGAA 59.636 45.455 0.00 0.00 0.00 3.18
2744 3648 0.185175 AACTCGTCCAAGCCCCTTTT 59.815 50.000 0.00 0.00 0.00 2.27
2767 3671 2.024414 GGGCATCCCAACACACTTATC 58.976 52.381 0.00 0.00 44.65 1.75
2769 3673 2.627945 GCATCCCAACACACTTATCGA 58.372 47.619 0.00 0.00 0.00 3.59
2776 3681 4.437390 CCCAACACACTTATCGAAGATTGC 60.437 45.833 0.00 0.00 45.12 3.56
2777 3682 4.326205 CAACACACTTATCGAAGATTGCG 58.674 43.478 0.00 0.00 45.12 4.85
2780 3685 3.243877 CACACTTATCGAAGATTGCGAGG 59.756 47.826 0.00 0.00 45.12 4.63
2781 3686 3.119101 ACACTTATCGAAGATTGCGAGGT 60.119 43.478 0.00 0.00 45.12 3.85
2782 3687 3.865745 CACTTATCGAAGATTGCGAGGTT 59.134 43.478 0.00 0.00 45.12 3.50
2788 3693 1.880027 GAAGATTGCGAGGTTGTTGGT 59.120 47.619 0.00 0.00 0.00 3.67
2796 3708 2.738314 GCGAGGTTGTTGGTTTACGTAT 59.262 45.455 0.00 0.00 0.00 3.06
2799 3711 2.481185 AGGTTGTTGGTTTACGTATGCG 59.519 45.455 0.19 0.19 44.93 4.73
2813 3729 2.656646 TGCGTCATCGAGGCACTT 59.343 55.556 7.23 0.00 46.20 3.16
2858 3774 5.735766 ACAGAAAAACCTAGTCATAGAGGC 58.264 41.667 0.00 0.00 36.17 4.70
2859 3775 5.119694 CAGAAAAACCTAGTCATAGAGGCC 58.880 45.833 0.00 0.00 36.17 5.19
2863 3779 3.352611 ACCTAGTCATAGAGGCCCATT 57.647 47.619 0.00 0.00 36.17 3.16
2864 3780 2.975489 ACCTAGTCATAGAGGCCCATTG 59.025 50.000 0.00 0.00 36.17 2.82
2865 3781 2.975489 CCTAGTCATAGAGGCCCATTGT 59.025 50.000 0.00 0.00 0.00 2.71
2866 3782 3.392616 CCTAGTCATAGAGGCCCATTGTT 59.607 47.826 0.00 0.00 0.00 2.83
2867 3783 3.287867 AGTCATAGAGGCCCATTGTTG 57.712 47.619 0.00 0.00 0.00 3.33
2868 3784 2.092212 AGTCATAGAGGCCCATTGTTGG 60.092 50.000 0.00 0.00 43.23 3.77
2869 3785 1.922447 TCATAGAGGCCCATTGTTGGT 59.078 47.619 0.00 0.00 41.91 3.67
2870 3786 2.311542 TCATAGAGGCCCATTGTTGGTT 59.688 45.455 0.00 0.00 41.91 3.67
2871 3787 2.990740 TAGAGGCCCATTGTTGGTTT 57.009 45.000 0.00 0.00 41.91 3.27
2872 3788 2.101640 AGAGGCCCATTGTTGGTTTT 57.898 45.000 0.00 0.00 41.91 2.43
2873 3789 2.407562 AGAGGCCCATTGTTGGTTTTT 58.592 42.857 0.00 0.00 41.91 1.94
2909 3825 5.655488 CCATTGTTGGTTTGTTCACTGTTA 58.345 37.500 0.00 0.00 38.30 2.41
2912 3828 6.767524 TTGTTGGTTTGTTCACTGTTATCT 57.232 33.333 0.00 0.00 0.00 1.98
2913 3829 6.371809 TGTTGGTTTGTTCACTGTTATCTC 57.628 37.500 0.00 0.00 0.00 2.75
2914 3830 5.298276 TGTTGGTTTGTTCACTGTTATCTCC 59.702 40.000 0.00 0.00 0.00 3.71
2935 3851 1.472662 CCGGTGGATCCTATTCGCCT 61.473 60.000 14.23 0.00 0.00 5.52
2936 3852 0.393077 CGGTGGATCCTATTCGCCTT 59.607 55.000 14.23 0.00 0.00 4.35
2939 3855 0.679505 TGGATCCTATTCGCCTTCGG 59.320 55.000 14.23 0.00 36.13 4.30
2961 3877 4.513519 CGGCAAATAGACTCCGCA 57.486 55.556 0.00 0.00 35.20 5.69
3031 3947 1.341802 GCGTCTTGCGTCTGATTCG 59.658 57.895 0.00 0.00 43.66 3.34
3049 3967 6.950545 TGATTCGCTCTTTTTCTTTTCGTTA 58.049 32.000 0.00 0.00 0.00 3.18
3056 3974 9.916397 CGCTCTTTTTCTTTTCGTTATATATGT 57.084 29.630 0.00 0.00 0.00 2.29
3072 3990 9.699703 GTTATATATGTTGTGGGTTTTGTGTTT 57.300 29.630 0.00 0.00 0.00 2.83
3073 3991 9.915629 TTATATATGTTGTGGGTTTTGTGTTTC 57.084 29.630 0.00 0.00 0.00 2.78
3075 3993 2.296471 TGTTGTGGGTTTTGTGTTTCGT 59.704 40.909 0.00 0.00 0.00 3.85
3136 4054 6.676237 TTTCCCTTCTGCATTTTGTTTTTC 57.324 33.333 0.00 0.00 0.00 2.29
3183 4101 4.295857 TCTGGTTTGGTTTTTCTTACGC 57.704 40.909 0.00 0.00 0.00 4.42
3200 4118 5.685511 TCTTACGCATTCTTTTGCTGTTTTC 59.314 36.000 0.00 0.00 40.54 2.29
3203 4121 3.732212 GCATTCTTTTGCTGTTTTCCCT 58.268 40.909 0.00 0.00 39.57 4.20
3211 4129 8.880878 TCTTTTGCTGTTTTCCCTTTTTATAC 57.119 30.769 0.00 0.00 0.00 1.47
3349 4268 9.734620 TTATGCTGAACATTTTTCTATATGCAC 57.265 29.630 0.00 0.00 40.38 4.57
3352 4271 7.094248 TGCTGAACATTTTTCTATATGCACAGT 60.094 33.333 0.00 0.00 34.16 3.55
3358 4277 9.577110 ACATTTTTCTATATGCACAGTGATTTG 57.423 29.630 4.15 0.00 0.00 2.32
3437 4356 9.810545 AAGTAAGCTTTTTAAAAATGTACAGCA 57.189 25.926 13.55 0.00 0.00 4.41
3438 4357 9.810545 AGTAAGCTTTTTAAAAATGTACAGCAA 57.189 25.926 13.55 3.20 0.00 3.91
3442 4361 9.161629 AGCTTTTTAAAAATGTACAGCAAACTT 57.838 25.926 13.55 0.00 0.00 2.66
3443 4362 9.767684 GCTTTTTAAAAATGTACAGCAAACTTT 57.232 25.926 13.55 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.030504 TAGAACGCGAACACGACCAA 59.969 50.000 15.93 0.00 36.70 3.67
1 2 0.661187 GTAGAACGCGAACACGACCA 60.661 55.000 15.93 0.00 36.70 4.02
2 3 0.661187 TGTAGAACGCGAACACGACC 60.661 55.000 15.93 0.00 36.70 4.79
5 6 1.057636 ACATGTAGAACGCGAACACG 58.942 50.000 15.93 6.65 39.50 4.49
6 7 1.461888 GCACATGTAGAACGCGAACAC 60.462 52.381 15.93 5.48 0.00 3.32
7 8 0.787787 GCACATGTAGAACGCGAACA 59.212 50.000 15.93 11.96 0.00 3.18
8 9 0.094730 GGCACATGTAGAACGCGAAC 59.905 55.000 15.93 6.10 0.00 3.95
9 10 1.017177 GGGCACATGTAGAACGCGAA 61.017 55.000 15.93 0.00 0.00 4.70
10 11 1.447140 GGGCACATGTAGAACGCGA 60.447 57.895 15.93 0.00 0.00 5.87
11 12 1.739929 TGGGCACATGTAGAACGCG 60.740 57.895 3.53 3.53 0.00 6.01
12 13 1.644786 GGTGGGCACATGTAGAACGC 61.645 60.000 0.00 0.00 0.00 4.84
13 14 1.358725 CGGTGGGCACATGTAGAACG 61.359 60.000 0.00 0.00 0.00 3.95
14 15 0.036765 TCGGTGGGCACATGTAGAAC 60.037 55.000 0.00 0.00 0.00 3.01
15 16 0.908910 ATCGGTGGGCACATGTAGAA 59.091 50.000 0.00 0.00 0.00 2.10
16 17 0.464036 GATCGGTGGGCACATGTAGA 59.536 55.000 0.00 0.00 0.00 2.59
17 18 0.177836 TGATCGGTGGGCACATGTAG 59.822 55.000 0.00 0.00 0.00 2.74
18 19 0.177836 CTGATCGGTGGGCACATGTA 59.822 55.000 0.00 0.00 0.00 2.29
19 20 1.078214 CTGATCGGTGGGCACATGT 60.078 57.895 0.00 0.00 0.00 3.21
20 21 2.475466 GCTGATCGGTGGGCACATG 61.475 63.158 2.89 0.00 0.00 3.21
21 22 2.124570 GCTGATCGGTGGGCACAT 60.125 61.111 2.89 0.00 0.00 3.21
22 23 3.610619 CTGCTGATCGGTGGGCACA 62.611 63.158 2.89 0.00 0.00 4.57
23 24 2.821366 CTGCTGATCGGTGGGCAC 60.821 66.667 2.89 0.00 0.00 5.01
24 25 2.803155 GAACTGCTGATCGGTGGGCA 62.803 60.000 2.89 0.70 33.75 5.36
25 26 2.045926 AACTGCTGATCGGTGGGC 60.046 61.111 2.89 0.00 33.75 5.36
26 27 1.811266 CGAACTGCTGATCGGTGGG 60.811 63.158 14.18 0.00 35.31 4.61
27 28 2.456119 GCGAACTGCTGATCGGTGG 61.456 63.158 21.35 0.00 41.73 4.61
28 29 2.456119 GGCGAACTGCTGATCGGTG 61.456 63.158 21.35 0.00 45.43 4.94
29 30 2.125512 GGCGAACTGCTGATCGGT 60.126 61.111 21.35 0.00 45.43 4.69
36 37 1.134818 TCATAACATCGGCGAACTGCT 60.135 47.619 15.93 2.17 45.43 4.24
37 38 1.004927 GTCATAACATCGGCGAACTGC 60.005 52.381 15.93 0.81 45.38 4.40
38 39 1.255342 CGTCATAACATCGGCGAACTG 59.745 52.381 15.93 11.80 0.00 3.16
39 40 1.133598 TCGTCATAACATCGGCGAACT 59.866 47.619 15.93 3.59 0.00 3.01
40 41 1.552226 TCGTCATAACATCGGCGAAC 58.448 50.000 15.93 4.39 0.00 3.95
41 42 2.281140 TTCGTCATAACATCGGCGAA 57.719 45.000 15.93 0.00 36.26 4.70
42 43 2.190161 CTTTCGTCATAACATCGGCGA 58.810 47.619 13.87 13.87 0.00 5.54
43 44 1.257936 CCTTTCGTCATAACATCGGCG 59.742 52.381 0.00 0.00 0.00 6.46
44 45 2.284417 GTCCTTTCGTCATAACATCGGC 59.716 50.000 0.00 0.00 0.00 5.54
45 46 3.551890 CAGTCCTTTCGTCATAACATCGG 59.448 47.826 0.00 0.00 0.00 4.18
46 47 3.000322 GCAGTCCTTTCGTCATAACATCG 60.000 47.826 0.00 0.00 0.00 3.84
47 48 3.309954 GGCAGTCCTTTCGTCATAACATC 59.690 47.826 0.00 0.00 0.00 3.06
48 49 3.270877 GGCAGTCCTTTCGTCATAACAT 58.729 45.455 0.00 0.00 0.00 2.71
49 50 2.614481 GGGCAGTCCTTTCGTCATAACA 60.614 50.000 0.00 0.00 0.00 2.41
50 51 2.007608 GGGCAGTCCTTTCGTCATAAC 58.992 52.381 0.00 0.00 0.00 1.89
51 52 1.626321 TGGGCAGTCCTTTCGTCATAA 59.374 47.619 0.00 0.00 36.20 1.90
52 53 1.066430 GTGGGCAGTCCTTTCGTCATA 60.066 52.381 0.00 0.00 36.20 2.15
53 54 0.321653 GTGGGCAGTCCTTTCGTCAT 60.322 55.000 0.00 0.00 36.20 3.06
54 55 1.070786 GTGGGCAGTCCTTTCGTCA 59.929 57.895 0.00 0.00 36.20 4.35
55 56 1.671379 GGTGGGCAGTCCTTTCGTC 60.671 63.158 0.00 0.00 36.20 4.20
56 57 2.430367 GGTGGGCAGTCCTTTCGT 59.570 61.111 0.00 0.00 36.20 3.85
57 58 2.359975 GGGTGGGCAGTCCTTTCG 60.360 66.667 0.00 0.00 36.20 3.46
58 59 1.303643 CAGGGTGGGCAGTCCTTTC 60.304 63.158 0.00 0.00 36.20 2.62
59 60 1.774217 TCAGGGTGGGCAGTCCTTT 60.774 57.895 0.00 0.00 36.20 3.11
60 61 2.121963 TCAGGGTGGGCAGTCCTT 60.122 61.111 0.00 0.00 36.20 3.36
61 62 2.930562 GTCAGGGTGGGCAGTCCT 60.931 66.667 0.00 0.00 36.20 3.85
62 63 2.142292 AATGTCAGGGTGGGCAGTCC 62.142 60.000 0.00 0.00 0.00 3.85
63 64 0.678048 GAATGTCAGGGTGGGCAGTC 60.678 60.000 0.00 0.00 0.00 3.51
64 65 1.380302 GAATGTCAGGGTGGGCAGT 59.620 57.895 0.00 0.00 0.00 4.40
65 66 0.251297 TTGAATGTCAGGGTGGGCAG 60.251 55.000 0.00 0.00 0.00 4.85
66 67 0.251297 CTTGAATGTCAGGGTGGGCA 60.251 55.000 0.00 0.00 0.00 5.36
67 68 0.967380 CCTTGAATGTCAGGGTGGGC 60.967 60.000 0.00 0.00 38.66 5.36
68 69 0.323725 CCCTTGAATGTCAGGGTGGG 60.324 60.000 5.76 0.00 41.57 4.61
69 70 0.967380 GCCCTTGAATGTCAGGGTGG 60.967 60.000 6.12 0.00 41.57 4.61
70 71 0.038744 AGCCCTTGAATGTCAGGGTG 59.961 55.000 6.12 0.00 41.57 4.61
71 72 0.779997 AAGCCCTTGAATGTCAGGGT 59.220 50.000 6.12 0.00 41.57 4.34
72 73 1.821136 GAAAGCCCTTGAATGTCAGGG 59.179 52.381 0.00 0.00 42.66 4.45
73 74 1.470098 CGAAAGCCCTTGAATGTCAGG 59.530 52.381 0.00 0.00 0.00 3.86
74 75 1.470098 CCGAAAGCCCTTGAATGTCAG 59.530 52.381 0.00 0.00 0.00 3.51
75 76 1.202879 ACCGAAAGCCCTTGAATGTCA 60.203 47.619 0.00 0.00 0.00 3.58
76 77 1.468914 GACCGAAAGCCCTTGAATGTC 59.531 52.381 0.00 0.00 0.00 3.06
77 78 1.534729 GACCGAAAGCCCTTGAATGT 58.465 50.000 0.00 0.00 0.00 2.71
78 79 0.811281 GGACCGAAAGCCCTTGAATG 59.189 55.000 0.00 0.00 0.00 2.67
79 80 0.676782 CGGACCGAAAGCCCTTGAAT 60.677 55.000 8.64 0.00 0.00 2.57
80 81 1.302192 CGGACCGAAAGCCCTTGAA 60.302 57.895 8.64 0.00 0.00 2.69
81 82 2.345991 CGGACCGAAAGCCCTTGA 59.654 61.111 8.64 0.00 0.00 3.02
82 83 2.746277 CCGGACCGAAAGCCCTTG 60.746 66.667 17.49 0.00 0.00 3.61
83 84 3.246880 ACCGGACCGAAAGCCCTT 61.247 61.111 17.49 0.00 0.00 3.95
84 85 3.703127 GACCGGACCGAAAGCCCT 61.703 66.667 17.49 0.00 0.00 5.19
85 86 3.660732 GAGACCGGACCGAAAGCCC 62.661 68.421 17.49 0.00 0.00 5.19
86 87 2.125633 GAGACCGGACCGAAAGCC 60.126 66.667 17.49 0.00 0.00 4.35
87 88 1.446272 CAGAGACCGGACCGAAAGC 60.446 63.158 17.49 1.87 0.00 3.51
88 89 1.446272 GCAGAGACCGGACCGAAAG 60.446 63.158 17.49 0.41 0.00 2.62
89 90 2.654877 GCAGAGACCGGACCGAAA 59.345 61.111 17.49 0.00 0.00 3.46
90 91 3.744719 CGCAGAGACCGGACCGAA 61.745 66.667 17.49 0.00 0.00 4.30
92 93 4.477975 GACGCAGAGACCGGACCG 62.478 72.222 9.46 6.99 0.00 4.79
93 94 3.371063 TGACGCAGAGACCGGACC 61.371 66.667 9.46 0.00 0.00 4.46
94 95 2.126424 GTGACGCAGAGACCGGAC 60.126 66.667 9.46 0.10 0.00 4.79
95 96 3.371063 GGTGACGCAGAGACCGGA 61.371 66.667 9.46 0.00 0.00 5.14
107 108 3.554692 CGAAGCATCGCCGGTGAC 61.555 66.667 22.26 8.88 42.96 3.67
116 117 2.892425 CCCCGCAGTCGAAGCATC 60.892 66.667 11.14 0.00 38.10 3.91
117 118 4.473520 CCCCCGCAGTCGAAGCAT 62.474 66.667 11.14 0.00 38.10 3.79
131 132 1.883926 GTACACATGTTCAACACCCCC 59.116 52.381 0.00 0.00 0.00 5.40
132 133 2.577700 TGTACACATGTTCAACACCCC 58.422 47.619 0.00 0.00 0.00 4.95
133 134 4.159377 CATGTACACATGTTCAACACCC 57.841 45.455 13.13 0.00 46.40 4.61
144 145 5.010314 CCCATACCTACGTACATGTACACAT 59.990 44.000 30.17 19.22 35.87 3.21
145 146 4.338964 CCCATACCTACGTACATGTACACA 59.661 45.833 30.17 18.22 35.87 3.72
146 147 4.339247 ACCCATACCTACGTACATGTACAC 59.661 45.833 30.17 12.18 35.87 2.90
147 148 4.535781 ACCCATACCTACGTACATGTACA 58.464 43.478 30.17 14.71 35.87 2.90
148 149 5.520376 AACCCATACCTACGTACATGTAC 57.480 43.478 23.53 23.53 0.00 2.90
149 150 5.221028 CGAAACCCATACCTACGTACATGTA 60.221 44.000 0.08 0.08 0.00 2.29
150 151 4.440525 CGAAACCCATACCTACGTACATGT 60.441 45.833 2.69 2.69 0.00 3.21
151 152 4.046462 CGAAACCCATACCTACGTACATG 58.954 47.826 0.00 0.00 0.00 3.21
152 153 3.701040 ACGAAACCCATACCTACGTACAT 59.299 43.478 0.00 0.00 0.00 2.29
153 154 3.088532 ACGAAACCCATACCTACGTACA 58.911 45.455 0.00 0.00 0.00 2.90
154 155 3.782889 ACGAAACCCATACCTACGTAC 57.217 47.619 0.00 0.00 0.00 3.67
155 156 4.261572 GCATACGAAACCCATACCTACGTA 60.262 45.833 0.00 0.00 38.65 3.57
156 157 3.491447 GCATACGAAACCCATACCTACGT 60.491 47.826 0.00 0.00 36.52 3.57
157 158 3.054878 GCATACGAAACCCATACCTACG 58.945 50.000 0.00 0.00 0.00 3.51
158 159 4.056050 CTGCATACGAAACCCATACCTAC 58.944 47.826 0.00 0.00 0.00 3.18
159 160 3.707611 ACTGCATACGAAACCCATACCTA 59.292 43.478 0.00 0.00 0.00 3.08
160 161 2.504175 ACTGCATACGAAACCCATACCT 59.496 45.455 0.00 0.00 0.00 3.08
161 162 2.914059 ACTGCATACGAAACCCATACC 58.086 47.619 0.00 0.00 0.00 2.73
162 163 3.805971 GGTACTGCATACGAAACCCATAC 59.194 47.826 0.00 0.00 34.22 2.39
163 164 3.707611 AGGTACTGCATACGAAACCCATA 59.292 43.478 0.00 0.00 37.18 2.74
164 165 2.504175 AGGTACTGCATACGAAACCCAT 59.496 45.455 0.00 0.00 37.18 4.00
165 166 1.903860 AGGTACTGCATACGAAACCCA 59.096 47.619 0.00 0.00 37.18 4.51
166 167 2.685850 AGGTACTGCATACGAAACCC 57.314 50.000 0.00 0.00 37.18 4.11
179 180 3.561744 GGGAGACAGACACTACAGGTACT 60.562 52.174 0.00 0.00 43.88 2.73
180 181 2.754002 GGGAGACAGACACTACAGGTAC 59.246 54.545 0.00 0.00 0.00 3.34
181 182 2.648304 AGGGAGACAGACACTACAGGTA 59.352 50.000 0.00 0.00 0.00 3.08
182 183 1.429687 AGGGAGACAGACACTACAGGT 59.570 52.381 0.00 0.00 0.00 4.00
183 184 2.096248 GAGGGAGACAGACACTACAGG 58.904 57.143 0.00 0.00 0.00 4.00
184 185 2.752354 CAGAGGGAGACAGACACTACAG 59.248 54.545 0.00 0.00 0.00 2.74
185 186 2.108425 ACAGAGGGAGACAGACACTACA 59.892 50.000 0.00 0.00 0.00 2.74
186 187 2.797786 ACAGAGGGAGACAGACACTAC 58.202 52.381 0.00 0.00 0.00 2.73
187 188 4.018324 ACATACAGAGGGAGACAGACACTA 60.018 45.833 0.00 0.00 0.00 2.74
188 189 3.245443 ACATACAGAGGGAGACAGACACT 60.245 47.826 0.00 0.00 0.00 3.55
189 190 3.093057 ACATACAGAGGGAGACAGACAC 58.907 50.000 0.00 0.00 0.00 3.67
190 191 3.458044 ACATACAGAGGGAGACAGACA 57.542 47.619 0.00 0.00 0.00 3.41
191 192 3.312973 CGTACATACAGAGGGAGACAGAC 59.687 52.174 0.00 0.00 0.00 3.51
192 193 3.054582 ACGTACATACAGAGGGAGACAGA 60.055 47.826 0.00 0.00 0.00 3.41
193 194 3.065510 CACGTACATACAGAGGGAGACAG 59.934 52.174 0.00 0.00 0.00 3.51
194 195 3.014623 CACGTACATACAGAGGGAGACA 58.985 50.000 0.00 0.00 0.00 3.41
195 196 3.015327 ACACGTACATACAGAGGGAGAC 58.985 50.000 0.00 0.00 0.00 3.36
196 197 3.361281 ACACGTACATACAGAGGGAGA 57.639 47.619 0.00 0.00 0.00 3.71
197 198 5.064558 AGATACACGTACATACAGAGGGAG 58.935 45.833 0.00 0.00 0.00 4.30
198 199 5.045012 AGATACACGTACATACAGAGGGA 57.955 43.478 0.00 0.00 0.00 4.20
199 200 5.769484 AAGATACACGTACATACAGAGGG 57.231 43.478 0.00 0.00 0.00 4.30
200 201 6.709397 TCCTAAGATACACGTACATACAGAGG 59.291 42.308 0.00 0.00 0.00 3.69
201 202 7.656542 TCTCCTAAGATACACGTACATACAGAG 59.343 40.741 0.00 0.00 0.00 3.35
202 203 7.440556 GTCTCCTAAGATACACGTACATACAGA 59.559 40.741 0.00 0.00 33.08 3.41
203 204 7.226128 TGTCTCCTAAGATACACGTACATACAG 59.774 40.741 0.00 0.00 33.08 2.74
204 205 7.049754 TGTCTCCTAAGATACACGTACATACA 58.950 38.462 0.00 0.00 33.08 2.29
205 206 7.488187 TGTCTCCTAAGATACACGTACATAC 57.512 40.000 0.00 0.00 33.08 2.39
206 207 7.989170 TCTTGTCTCCTAAGATACACGTACATA 59.011 37.037 0.00 0.00 33.08 2.29
207 208 6.827251 TCTTGTCTCCTAAGATACACGTACAT 59.173 38.462 0.00 0.00 33.08 2.29
208 209 6.093219 GTCTTGTCTCCTAAGATACACGTACA 59.907 42.308 0.00 0.00 36.63 2.90
209 210 6.093219 TGTCTTGTCTCCTAAGATACACGTAC 59.907 42.308 0.00 0.00 36.63 3.67
210 211 6.175471 TGTCTTGTCTCCTAAGATACACGTA 58.825 40.000 0.00 0.00 36.63 3.57
211 212 5.008331 TGTCTTGTCTCCTAAGATACACGT 58.992 41.667 0.00 0.00 36.63 4.49
212 213 5.562506 TGTCTTGTCTCCTAAGATACACG 57.437 43.478 0.00 0.00 36.63 4.49
213 214 6.202937 CGATGTCTTGTCTCCTAAGATACAC 58.797 44.000 0.00 0.00 36.63 2.90
214 215 5.299531 CCGATGTCTTGTCTCCTAAGATACA 59.700 44.000 0.00 0.00 36.63 2.29
215 216 5.299782 ACCGATGTCTTGTCTCCTAAGATAC 59.700 44.000 0.00 0.00 36.63 2.24
216 217 5.446860 ACCGATGTCTTGTCTCCTAAGATA 58.553 41.667 0.00 0.00 36.63 1.98
217 218 4.282496 ACCGATGTCTTGTCTCCTAAGAT 58.718 43.478 0.00 0.00 36.63 2.40
218 219 3.695060 GACCGATGTCTTGTCTCCTAAGA 59.305 47.826 0.00 0.00 38.53 2.10
219 220 3.487711 CGACCGATGTCTTGTCTCCTAAG 60.488 52.174 0.00 0.00 39.47 2.18
220 221 2.422479 CGACCGATGTCTTGTCTCCTAA 59.578 50.000 0.00 0.00 39.47 2.69
221 222 2.014857 CGACCGATGTCTTGTCTCCTA 58.985 52.381 0.00 0.00 39.47 2.94
222 223 0.811915 CGACCGATGTCTTGTCTCCT 59.188 55.000 0.00 0.00 39.47 3.69
223 224 0.802607 GCGACCGATGTCTTGTCTCC 60.803 60.000 0.00 0.00 39.47 3.71
224 225 0.109272 TGCGACCGATGTCTTGTCTC 60.109 55.000 0.00 0.00 39.47 3.36
225 226 0.388649 GTGCGACCGATGTCTTGTCT 60.389 55.000 0.00 0.00 39.47 3.41
226 227 1.352156 GGTGCGACCGATGTCTTGTC 61.352 60.000 0.00 0.00 39.47 3.18
227 228 1.374252 GGTGCGACCGATGTCTTGT 60.374 57.895 0.00 0.00 39.47 3.16
228 229 2.100631 GGGTGCGACCGATGTCTTG 61.101 63.158 0.00 0.00 39.83 3.02
229 230 2.264794 GGGTGCGACCGATGTCTT 59.735 61.111 0.00 0.00 39.83 3.01
230 231 3.771160 GGGGTGCGACCGATGTCT 61.771 66.667 0.00 0.00 39.83 3.41
231 232 3.310860 AAGGGGTGCGACCGATGTC 62.311 63.158 0.00 0.00 39.83 3.06
232 233 3.319198 AAGGGGTGCGACCGATGT 61.319 61.111 0.00 0.00 39.83 3.06
233 234 2.233605 TACAAGGGGTGCGACCGATG 62.234 60.000 0.00 0.38 39.83 3.84
234 235 1.985662 TACAAGGGGTGCGACCGAT 60.986 57.895 0.00 0.00 39.83 4.18
235 236 2.601067 TACAAGGGGTGCGACCGA 60.601 61.111 0.00 0.00 39.83 4.69
236 237 2.433664 GTACAAGGGGTGCGACCG 60.434 66.667 0.00 0.00 39.83 4.79
237 238 1.259840 TAGGTACAAGGGGTGCGACC 61.260 60.000 0.00 0.00 36.98 4.79
238 239 0.828677 ATAGGTACAAGGGGTGCGAC 59.171 55.000 0.00 0.00 32.16 5.19
239 240 2.457813 TATAGGTACAAGGGGTGCGA 57.542 50.000 0.00 0.00 32.16 5.10
240 241 6.726490 ATATATATAGGTACAAGGGGTGCG 57.274 41.667 0.00 0.00 32.16 5.34
241 242 9.155785 ACATATATATATAGGTACAAGGGGTGC 57.844 37.037 16.42 0.00 32.11 5.01
243 244 9.155785 GCACATATATATATAGGTACAAGGGGT 57.844 37.037 17.27 0.00 32.11 4.95
244 245 8.304596 CGCACATATATATATAGGTACAAGGGG 58.695 40.741 17.27 10.57 32.11 4.79
245 246 8.857098 ACGCACATATATATATAGGTACAAGGG 58.143 37.037 17.27 15.05 32.11 3.95
250 251 9.823098 GCACTACGCACATATATATATAGGTAC 57.177 37.037 17.27 12.20 41.79 3.34
270 271 3.000041 TGGTTGATTGATCGTGCACTAC 59.000 45.455 16.19 6.56 0.00 2.73
271 272 3.326836 TGGTTGATTGATCGTGCACTA 57.673 42.857 16.19 3.92 0.00 2.74
272 273 2.183478 TGGTTGATTGATCGTGCACT 57.817 45.000 16.19 0.00 0.00 4.40
273 274 2.537529 CGATGGTTGATTGATCGTGCAC 60.538 50.000 6.82 6.82 35.38 4.57
274 275 1.665169 CGATGGTTGATTGATCGTGCA 59.335 47.619 0.00 0.00 35.38 4.57
275 276 1.933181 TCGATGGTTGATTGATCGTGC 59.067 47.619 0.00 0.00 39.93 5.34
276 277 3.605461 GCATCGATGGTTGATTGATCGTG 60.605 47.826 26.00 0.00 39.93 4.35
277 278 2.545526 GCATCGATGGTTGATTGATCGT 59.454 45.455 26.00 0.00 39.93 3.73
278 279 2.545106 TGCATCGATGGTTGATTGATCG 59.455 45.455 26.00 0.00 40.26 3.69
279 280 4.214758 TGATGCATCGATGGTTGATTGATC 59.785 41.667 26.00 6.47 33.37 2.92
280 281 4.139038 TGATGCATCGATGGTTGATTGAT 58.861 39.130 26.00 0.00 35.76 2.57
281 282 3.543665 TGATGCATCGATGGTTGATTGA 58.456 40.909 26.00 0.00 0.00 2.57
282 283 3.974871 TGATGCATCGATGGTTGATTG 57.025 42.857 26.00 0.41 0.00 2.67
283 284 4.987408 TTTGATGCATCGATGGTTGATT 57.013 36.364 26.00 0.00 0.00 2.57
284 285 4.581409 TGATTTGATGCATCGATGGTTGAT 59.419 37.500 26.00 9.01 0.00 2.57
285 286 3.946558 TGATTTGATGCATCGATGGTTGA 59.053 39.130 26.00 4.27 0.00 3.18
286 287 4.295857 TGATTTGATGCATCGATGGTTG 57.704 40.909 26.00 3.22 0.00 3.77
287 288 5.301045 AGAATGATTTGATGCATCGATGGTT 59.699 36.000 26.00 11.56 0.00 3.67
288 289 4.825634 AGAATGATTTGATGCATCGATGGT 59.174 37.500 26.00 9.12 0.00 3.55
289 290 5.181433 AGAGAATGATTTGATGCATCGATGG 59.819 40.000 26.00 8.82 0.00 3.51
290 291 6.242508 AGAGAATGATTTGATGCATCGATG 57.757 37.500 21.27 21.27 0.00 3.84
291 292 6.932960 TGTAGAGAATGATTTGATGCATCGAT 59.067 34.615 21.34 17.05 0.00 3.59
292 293 6.282930 TGTAGAGAATGATTTGATGCATCGA 58.717 36.000 21.34 17.35 0.00 3.59
293 294 6.535274 TGTAGAGAATGATTTGATGCATCG 57.465 37.500 21.34 0.00 0.00 3.84
294 295 7.928103 AGTTGTAGAGAATGATTTGATGCATC 58.072 34.615 20.14 20.14 0.00 3.91
295 296 7.876936 AGTTGTAGAGAATGATTTGATGCAT 57.123 32.000 0.00 0.00 0.00 3.96
296 297 8.833493 CATAGTTGTAGAGAATGATTTGATGCA 58.167 33.333 0.00 0.00 0.00 3.96
297 298 9.049523 TCATAGTTGTAGAGAATGATTTGATGC 57.950 33.333 0.00 0.00 0.00 3.91
300 301 9.605275 CCTTCATAGTTGTAGAGAATGATTTGA 57.395 33.333 0.00 0.00 0.00 2.69
301 302 9.605275 TCCTTCATAGTTGTAGAGAATGATTTG 57.395 33.333 0.00 0.00 0.00 2.32
303 304 9.606631 GTTCCTTCATAGTTGTAGAGAATGATT 57.393 33.333 0.00 0.00 0.00 2.57
304 305 8.986991 AGTTCCTTCATAGTTGTAGAGAATGAT 58.013 33.333 0.00 0.00 0.00 2.45
305 306 8.367660 AGTTCCTTCATAGTTGTAGAGAATGA 57.632 34.615 0.00 0.00 0.00 2.57
306 307 9.522804 GTAGTTCCTTCATAGTTGTAGAGAATG 57.477 37.037 0.00 0.00 0.00 2.67
307 308 9.482175 AGTAGTTCCTTCATAGTTGTAGAGAAT 57.518 33.333 0.00 0.00 0.00 2.40
308 309 8.880991 AGTAGTTCCTTCATAGTTGTAGAGAA 57.119 34.615 0.00 0.00 0.00 2.87
309 310 8.880991 AAGTAGTTCCTTCATAGTTGTAGAGA 57.119 34.615 0.00 0.00 0.00 3.10
310 311 9.930693 AAAAGTAGTTCCTTCATAGTTGTAGAG 57.069 33.333 0.00 0.00 0.00 2.43
343 344 4.985413 TCTTTCGCATGCAGAAAAATAGG 58.015 39.130 26.17 18.62 37.18 2.57
344 345 5.634896 ACTCTTTCGCATGCAGAAAAATAG 58.365 37.500 26.17 23.98 37.18 1.73
346 347 4.510038 ACTCTTTCGCATGCAGAAAAAT 57.490 36.364 26.17 17.04 37.18 1.82
347 348 3.988379 ACTCTTTCGCATGCAGAAAAA 57.012 38.095 26.17 18.42 37.18 1.94
352 353 1.802960 AGTCAACTCTTTCGCATGCAG 59.197 47.619 19.57 9.52 0.00 4.41
354 355 4.606457 AATAGTCAACTCTTTCGCATGC 57.394 40.909 7.91 7.91 0.00 4.06
356 357 6.801539 TCAAAATAGTCAACTCTTTCGCAT 57.198 33.333 0.00 0.00 0.00 4.73
357 358 6.260050 ACTTCAAAATAGTCAACTCTTTCGCA 59.740 34.615 0.00 0.00 0.00 5.10
358 359 6.575201 CACTTCAAAATAGTCAACTCTTTCGC 59.425 38.462 0.00 0.00 0.00 4.70
378 381 3.335579 AGAAAACGGCTGATACCACTTC 58.664 45.455 0.00 0.00 0.00 3.01
398 401 4.034510 CGGCTCCTTGCAGTTCTTATAAAG 59.965 45.833 0.00 0.00 45.15 1.85
416 728 0.893727 ATCCAACAACCCAACGGCTC 60.894 55.000 0.00 0.00 0.00 4.70
512 851 3.983044 AGTGACCAATACCACTTCCTC 57.017 47.619 0.00 0.00 40.40 3.71
532 874 3.862267 CACTTGCAATTTCGTGGTTTCAA 59.138 39.130 0.00 0.00 0.00 2.69
533 875 3.129462 TCACTTGCAATTTCGTGGTTTCA 59.871 39.130 14.44 0.00 0.00 2.69
537 879 1.336755 GGTCACTTGCAATTTCGTGGT 59.663 47.619 14.44 0.00 0.00 4.16
567 909 1.501170 TCCCCCAACAATTGAGTGGAA 59.499 47.619 25.21 13.00 0.00 3.53
585 927 1.014564 CACGACGCTCCCTTCTTTCC 61.015 60.000 0.00 0.00 0.00 3.13
586 928 0.038526 TCACGACGCTCCCTTCTTTC 60.039 55.000 0.00 0.00 0.00 2.62
590 935 0.248702 GATCTCACGACGCTCCCTTC 60.249 60.000 0.00 0.00 0.00 3.46
593 938 0.248702 GAAGATCTCACGACGCTCCC 60.249 60.000 0.00 0.00 0.00 4.30
599 944 1.131504 ACAGCGAGAAGATCTCACGAC 59.868 52.381 16.38 9.74 43.55 4.34
627 975 2.693069 AGCGATCAGTCTGTTGAAAGG 58.307 47.619 0.00 0.00 0.00 3.11
629 977 3.494626 GTGAAGCGATCAGTCTGTTGAAA 59.505 43.478 0.00 0.00 39.19 2.69
659 1007 4.154347 CCGGGCCTCTCTGTGAGC 62.154 72.222 0.84 0.00 41.35 4.26
676 1024 2.030457 CGAGATGTCAAACGGTTATGCC 59.970 50.000 0.00 0.00 0.00 4.40
677 1025 2.671396 ACGAGATGTCAAACGGTTATGC 59.329 45.455 0.00 0.00 0.00 3.14
679 1027 2.671396 GCACGAGATGTCAAACGGTTAT 59.329 45.455 0.00 0.00 0.00 1.89
704 1056 2.766345 TGCACTATGTCATCAGCACA 57.234 45.000 3.44 0.00 0.00 4.57
728 1080 7.090173 GCACTATGCCAACTCAGAAATAAAAA 58.910 34.615 0.00 0.00 37.42 1.94
729 1081 6.208402 TGCACTATGCCAACTCAGAAATAAAA 59.792 34.615 0.00 0.00 44.23 1.52
730 1082 5.709631 TGCACTATGCCAACTCAGAAATAAA 59.290 36.000 0.00 0.00 44.23 1.40
731 1083 5.252547 TGCACTATGCCAACTCAGAAATAA 58.747 37.500 0.00 0.00 44.23 1.40
732 1084 4.842574 TGCACTATGCCAACTCAGAAATA 58.157 39.130 0.00 0.00 44.23 1.40
733 1085 3.689347 TGCACTATGCCAACTCAGAAAT 58.311 40.909 0.00 0.00 44.23 2.17
734 1086 3.138884 TGCACTATGCCAACTCAGAAA 57.861 42.857 0.00 0.00 44.23 2.52
735 1087 2.857186 TGCACTATGCCAACTCAGAA 57.143 45.000 0.00 0.00 44.23 3.02
736 1088 2.739609 CGATGCACTATGCCAACTCAGA 60.740 50.000 0.00 0.00 44.23 3.27
737 1089 1.596260 CGATGCACTATGCCAACTCAG 59.404 52.381 0.00 0.00 44.23 3.35
738 1090 1.066215 ACGATGCACTATGCCAACTCA 60.066 47.619 0.00 0.00 44.23 3.41
739 1091 1.656652 ACGATGCACTATGCCAACTC 58.343 50.000 0.00 0.00 44.23 3.01
740 1092 2.979814 TACGATGCACTATGCCAACT 57.020 45.000 0.00 0.00 44.23 3.16
741 1093 3.393800 AGATACGATGCACTATGCCAAC 58.606 45.455 0.00 0.00 44.23 3.77
742 1094 3.751479 AGATACGATGCACTATGCCAA 57.249 42.857 0.00 0.00 44.23 4.52
743 1095 3.056821 GGTAGATACGATGCACTATGCCA 60.057 47.826 0.00 0.00 44.23 4.92
744 1096 3.512680 GGTAGATACGATGCACTATGCC 58.487 50.000 0.00 0.00 44.23 4.40
745 1097 3.172050 CGGTAGATACGATGCACTATGC 58.828 50.000 0.00 0.00 45.29 3.14
746 1098 3.172050 GCGGTAGATACGATGCACTATG 58.828 50.000 0.00 0.00 0.00 2.23
747 1099 2.159558 CGCGGTAGATACGATGCACTAT 60.160 50.000 0.00 0.00 0.00 2.12
748 1100 1.196127 CGCGGTAGATACGATGCACTA 59.804 52.381 0.00 0.00 0.00 2.74
792 1144 1.242076 CCTGTGAGTCCAAGCAAAGG 58.758 55.000 0.00 0.00 33.44 3.11
794 1146 2.703536 TCTACCTGTGAGTCCAAGCAAA 59.296 45.455 0.00 0.00 0.00 3.68
817 1169 1.077716 GAATGGTAGCGGGGCAAGT 60.078 57.895 0.00 0.00 0.00 3.16
861 1213 2.662070 GGTAGGCGGTTAGGTGGCA 61.662 63.158 0.00 0.00 0.00 4.92
886 1238 2.691526 GCTGAATGGAGGATGAATTGCA 59.308 45.455 0.00 0.00 0.00 4.08
939 1300 3.173668 TCCGTATGTATGCAACAGGAC 57.826 47.619 0.00 0.00 42.70 3.85
947 1308 1.636988 GCCCGTATCCGTATGTATGC 58.363 55.000 0.00 0.00 0.00 3.14
1072 1436 4.379243 CGAGACCACAAGGCCGCT 62.379 66.667 0.00 0.00 39.06 5.52
1324 1732 3.451141 TGAAATGGAAACCAAGTGCAC 57.549 42.857 9.40 9.40 36.95 4.57
1493 1963 1.661821 GTCGAGAATGCCGGATCCG 60.662 63.158 27.65 27.65 39.44 4.18
1599 2089 3.063180 GGCGAAAGACAGATGAATGTGAG 59.937 47.826 0.00 0.00 40.66 3.51
1618 2461 1.267261 TGTGTTGTTTTATTCCGGGCG 59.733 47.619 0.00 0.00 0.00 6.13
1625 2468 7.214467 AGACGGATGAATGTGTTGTTTTATT 57.786 32.000 0.00 0.00 0.00 1.40
1637 2480 7.928908 TTTTTCAGAAAAAGACGGATGAATG 57.071 32.000 15.81 0.00 35.84 2.67
1692 2553 9.566624 CATGAAGCAAAATTAGTAAAAACAACG 57.433 29.630 0.00 0.00 0.00 4.10
1696 2557 8.424731 CCGACATGAAGCAAAATTAGTAAAAAC 58.575 33.333 0.00 0.00 0.00 2.43
1806 2681 1.741770 GTCGATGCCACGGCTCTTT 60.742 57.895 9.92 0.00 42.51 2.52
2416 3312 3.911661 AATCAGCTGCTTGAAGTTGAC 57.088 42.857 9.47 0.00 39.77 3.18
2434 3330 2.797156 CGATCGCCGATCAAGAAGAAAT 59.203 45.455 25.17 0.00 38.84 2.17
2466 3362 2.202171 CAAATCGTGACCGTGCGC 60.202 61.111 0.00 0.00 35.01 6.09
2481 3377 6.704493 ACAACTAAATTAAGAGCTGACGACAA 59.296 34.615 0.00 0.00 0.00 3.18
2525 3421 2.200955 GGACATCTTTTCCCTCCCTCT 58.799 52.381 0.00 0.00 0.00 3.69
2572 3472 6.393171 TCTATGATTCTATTGCATCTCCACG 58.607 40.000 0.00 0.00 0.00 4.94
2599 3499 2.102438 CGCATGCATCACGACACCT 61.102 57.895 19.57 0.00 0.00 4.00
2640 3541 0.030235 GGTATTTTCGGGCCATTCGC 59.970 55.000 4.39 0.00 0.00 4.70
2642 3543 1.954382 GAGGGTATTTTCGGGCCATTC 59.046 52.381 4.39 0.00 0.00 2.67
2659 3560 8.447053 GCAACTTCACTTCTTTTATTCTAGAGG 58.553 37.037 0.00 0.00 0.00 3.69
2664 3565 9.651913 TTTTTGCAACTTCACTTCTTTTATTCT 57.348 25.926 0.00 0.00 0.00 2.40
2722 3626 1.671379 GGGGCTTGGACGAGTTCAC 60.671 63.158 0.00 0.00 0.00 3.18
2726 3630 1.061546 TAAAAGGGGCTTGGACGAGT 58.938 50.000 0.00 0.00 0.00 4.18
2744 3648 1.072266 AGTGTGTTGGGATGCCCTTA 58.928 50.000 0.00 0.00 45.70 2.69
2749 3653 2.627945 TCGATAAGTGTGTTGGGATGC 58.372 47.619 0.00 0.00 0.00 3.91
2752 3656 4.819105 ATCTTCGATAAGTGTGTTGGGA 57.181 40.909 0.00 0.00 34.13 4.37
2767 3671 1.135972 CCAACAACCTCGCAATCTTCG 60.136 52.381 0.00 0.00 0.00 3.79
2769 3673 1.981256 ACCAACAACCTCGCAATCTT 58.019 45.000 0.00 0.00 0.00 2.40
2776 3681 3.423907 GCATACGTAAACCAACAACCTCG 60.424 47.826 0.00 0.00 0.00 4.63
2777 3682 3.423907 CGCATACGTAAACCAACAACCTC 60.424 47.826 0.00 0.00 33.53 3.85
2796 3708 1.446099 GAAGTGCCTCGATGACGCA 60.446 57.895 0.00 0.00 39.58 5.24
2813 3729 9.196139 TCTGTTTTCCTTTTATTTCTTGAAGGA 57.804 29.630 0.00 0.00 44.30 3.36
2836 3752 5.119694 GGCCTCTATGACTAGGTTTTTCTG 58.880 45.833 0.00 0.00 35.16 3.02
2837 3753 4.164413 GGGCCTCTATGACTAGGTTTTTCT 59.836 45.833 0.84 0.00 35.16 2.52
2838 3754 4.080526 TGGGCCTCTATGACTAGGTTTTTC 60.081 45.833 4.53 0.00 35.16 2.29
2842 3758 2.868964 TGGGCCTCTATGACTAGGTT 57.131 50.000 4.53 0.00 35.16 3.50
2843 3759 2.975489 CAATGGGCCTCTATGACTAGGT 59.025 50.000 4.53 0.00 35.16 3.08
2844 3760 2.975489 ACAATGGGCCTCTATGACTAGG 59.025 50.000 4.53 0.00 35.86 3.02
2845 3761 4.384056 CAACAATGGGCCTCTATGACTAG 58.616 47.826 4.53 0.00 0.00 2.57
2846 3762 3.136443 CCAACAATGGGCCTCTATGACTA 59.864 47.826 4.53 0.00 43.51 2.59
2847 3763 2.092212 CCAACAATGGGCCTCTATGACT 60.092 50.000 4.53 0.00 43.51 3.41
2872 3788 6.613153 CCAACAATGGTATTCCCCTAAAAA 57.387 37.500 0.00 0.00 42.18 1.94
2888 3804 7.346751 AGATAACAGTGAACAAACCAACAAT 57.653 32.000 0.00 0.00 0.00 2.71
2896 3812 4.566004 CGGAGGAGATAACAGTGAACAAA 58.434 43.478 0.00 0.00 0.00 2.83
2914 3830 0.038159 GCGAATAGGATCCACCGGAG 60.038 60.000 15.82 0.00 44.74 4.63
2935 3851 2.045829 TATTTGCCGCCTGCCGAA 60.046 55.556 0.00 0.00 40.16 4.30
2936 3852 2.513666 CTATTTGCCGCCTGCCGA 60.514 61.111 0.00 0.00 40.16 5.54
2939 3855 1.440145 GGAGTCTATTTGCCGCCTGC 61.440 60.000 0.00 0.00 41.77 4.85
3030 3946 9.916397 ACATATATAACGAAAAGAAAAAGAGCG 57.084 29.630 0.00 0.00 0.00 5.03
3049 3967 7.087639 CGAAACACAAAACCCACAACATATAT 58.912 34.615 0.00 0.00 0.00 0.86
3053 3971 3.056465 ACGAAACACAAAACCCACAACAT 60.056 39.130 0.00 0.00 0.00 2.71
3056 3974 3.662247 AACGAAACACAAAACCCACAA 57.338 38.095 0.00 0.00 0.00 3.33
3095 4013 9.621629 GAAGGGAAAAAGGAAAAGGAAAATAAA 57.378 29.630 0.00 0.00 0.00 1.40
3096 4014 8.998814 AGAAGGGAAAAAGGAAAAGGAAAATAA 58.001 29.630 0.00 0.00 0.00 1.40
3097 4015 8.428852 CAGAAGGGAAAAAGGAAAAGGAAAATA 58.571 33.333 0.00 0.00 0.00 1.40
3098 4016 7.282585 CAGAAGGGAAAAAGGAAAAGGAAAAT 58.717 34.615 0.00 0.00 0.00 1.82
3099 4017 6.649155 CAGAAGGGAAAAAGGAAAAGGAAAA 58.351 36.000 0.00 0.00 0.00 2.29
3100 4018 5.396324 GCAGAAGGGAAAAAGGAAAAGGAAA 60.396 40.000 0.00 0.00 0.00 3.13
3101 4019 4.100963 GCAGAAGGGAAAAAGGAAAAGGAA 59.899 41.667 0.00 0.00 0.00 3.36
3102 4020 3.641436 GCAGAAGGGAAAAAGGAAAAGGA 59.359 43.478 0.00 0.00 0.00 3.36
3103 4021 3.387699 TGCAGAAGGGAAAAAGGAAAAGG 59.612 43.478 0.00 0.00 0.00 3.11
3104 4022 4.670896 TGCAGAAGGGAAAAAGGAAAAG 57.329 40.909 0.00 0.00 0.00 2.27
3105 4023 5.628797 AATGCAGAAGGGAAAAAGGAAAA 57.371 34.783 0.00 0.00 0.00 2.29
3106 4024 5.628797 AAATGCAGAAGGGAAAAAGGAAA 57.371 34.783 0.00 0.00 0.00 3.13
3107 4025 5.104569 ACAAAATGCAGAAGGGAAAAAGGAA 60.105 36.000 0.00 0.00 0.00 3.36
3108 4026 4.408596 ACAAAATGCAGAAGGGAAAAAGGA 59.591 37.500 0.00 0.00 0.00 3.36
3109 4027 4.707105 ACAAAATGCAGAAGGGAAAAAGG 58.293 39.130 0.00 0.00 0.00 3.11
3110 4028 6.682423 AAACAAAATGCAGAAGGGAAAAAG 57.318 33.333 0.00 0.00 0.00 2.27
3111 4029 7.392953 AGAAAAACAAAATGCAGAAGGGAAAAA 59.607 29.630 0.00 0.00 0.00 1.94
3112 4030 6.883756 AGAAAAACAAAATGCAGAAGGGAAAA 59.116 30.769 0.00 0.00 0.00 2.29
3116 4034 6.018507 CAGAAGAAAAACAAAATGCAGAAGGG 60.019 38.462 0.00 0.00 0.00 3.95
3183 4101 6.682423 AAAAGGGAAAACAGCAAAAGAATG 57.318 33.333 0.00 0.00 0.00 2.67
3346 4265 7.922505 TTGTACAATAAACAAATCACTGTGC 57.077 32.000 3.59 0.00 34.04 4.57
3415 4334 9.161629 AGTTTGCTGTACATTTTTAAAAAGCTT 57.838 25.926 17.72 0.00 0.00 3.74
3416 4335 8.716646 AGTTTGCTGTACATTTTTAAAAAGCT 57.283 26.923 17.72 8.39 0.00 3.74
3417 4336 9.767684 AAAGTTTGCTGTACATTTTTAAAAAGC 57.232 25.926 17.72 14.33 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.