Multiple sequence alignment - TraesCS6B01G340300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G340300 chr6B 100.000 3125 0 0 1 3125 599684526 599687650 0.000000e+00 5771.0
1 TraesCS6B01G340300 chr6A 89.467 2269 135 50 141 2342 546595359 546597590 0.000000e+00 2771.0
2 TraesCS6B01G340300 chr6A 86.571 350 38 5 2530 2879 546597872 546598212 8.180000e-101 377.0
3 TraesCS6B01G340300 chr6A 89.720 107 10 1 2421 2526 546597588 546597694 5.440000e-28 135.0
4 TraesCS6B01G340300 chr6D 89.462 2268 127 54 109 2328 400647351 400649554 0.000000e+00 2761.0
5 TraesCS6B01G340300 chr6D 83.791 401 27 19 2503 2899 400649666 400650032 2.310000e-91 346.0
6 TraesCS6B01G340300 chr7A 80.452 885 134 25 1133 2008 155646519 155645665 9.450000e-180 640.0
7 TraesCS6B01G340300 chr7B 80.293 888 130 30 1133 2008 115560973 115560119 2.050000e-176 628.0
8 TraesCS6B01G340300 chr7B 95.455 44 2 0 1817 1860 619072056 619072099 1.550000e-08 71.3
9 TraesCS6B01G340300 chr3B 96.585 205 5 2 2921 3125 779682482 779682684 3.860000e-89 339.0
10 TraesCS6B01G340300 chr3B 93.243 222 13 2 2906 3125 244787562 244787783 3.010000e-85 326.0
11 TraesCS6B01G340300 chr5A 96.098 205 7 1 2921 3125 21366996 21366793 1.800000e-87 333.0
12 TraesCS6B01G340300 chr4A 96.078 204 8 0 2922 3125 692581634 692581837 1.800000e-87 333.0
13 TraesCS6B01G340300 chr4A 95.098 204 9 1 2922 3125 676207631 676207429 1.400000e-83 320.0
14 TraesCS6B01G340300 chr3D 95.146 206 9 1 2921 3125 53461409 53461204 1.080000e-84 324.0
15 TraesCS6B01G340300 chr2A 95.146 206 7 2 2922 3125 343443030 343442826 3.890000e-84 322.0
16 TraesCS6B01G340300 chr2A 94.712 208 7 3 2921 3125 311760534 311760740 1.400000e-83 320.0
17 TraesCS6B01G340300 chr1A 94.712 208 8 2 2920 3125 28933542 28933336 1.400000e-83 320.0
18 TraesCS6B01G340300 chrUn 94.872 39 2 0 4 42 109030841 109030803 9.360000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G340300 chr6B 599684526 599687650 3124 False 5771.000000 5771 100.0000 1 3125 1 chr6B.!!$F1 3124
1 TraesCS6B01G340300 chr6A 546595359 546598212 2853 False 1094.333333 2771 88.5860 141 2879 3 chr6A.!!$F1 2738
2 TraesCS6B01G340300 chr6D 400647351 400650032 2681 False 1553.500000 2761 86.6265 109 2899 2 chr6D.!!$F1 2790
3 TraesCS6B01G340300 chr7A 155645665 155646519 854 True 640.000000 640 80.4520 1133 2008 1 chr7A.!!$R1 875
4 TraesCS6B01G340300 chr7B 115560119 115560973 854 True 628.000000 628 80.2930 1133 2008 1 chr7B.!!$R1 875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.249405 ACCGCGTAAACGACCTTCAA 60.249 50.0 4.92 0.00 43.02 2.69 F
690 716 0.312416 CTAGTCAAGGCTCGATCGGG 59.688 60.0 16.41 14.14 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1546 1.515736 GTACGTGTAGAGGTGCCGC 60.516 63.158 0.00 0.0 0.0 6.53 R
2413 2534 0.026285 GTGTATGCCATTCACGCGAC 59.974 55.000 15.93 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.862092 CAGCCGCTCGATCGCACT 62.862 66.667 11.09 0.00 0.00 4.40
31 32 3.209812 AGCCGCTCGATCGCACTA 61.210 61.111 11.09 0.00 0.00 2.74
32 33 2.727647 GCCGCTCGATCGCACTAG 60.728 66.667 11.09 3.46 0.00 2.57
33 34 2.716244 CCGCTCGATCGCACTAGT 59.284 61.111 11.09 0.00 0.00 2.57
34 35 1.655654 CCGCTCGATCGCACTAGTG 60.656 63.158 18.93 18.93 0.00 2.74
35 36 1.655654 CGCTCGATCGCACTAGTGG 60.656 63.158 23.95 13.97 0.00 4.00
36 37 1.299468 GCTCGATCGCACTAGTGGG 60.299 63.158 28.93 28.93 43.85 4.61
37 38 1.299468 CTCGATCGCACTAGTGGGC 60.299 63.158 29.72 18.18 42.44 5.36
38 39 2.004808 CTCGATCGCACTAGTGGGCA 62.005 60.000 29.72 20.30 42.44 5.36
39 40 1.589993 CGATCGCACTAGTGGGCAG 60.590 63.158 29.72 20.07 42.44 4.85
40 41 1.884926 GATCGCACTAGTGGGCAGC 60.885 63.158 29.72 19.17 42.44 5.25
41 42 3.391665 ATCGCACTAGTGGGCAGCC 62.392 63.158 29.72 1.26 42.44 4.85
51 52 4.840005 GGGCAGCCCACTAGACGC 62.840 72.222 27.33 0.00 44.65 5.19
53 54 4.436998 GCAGCCCACTAGACGCGT 62.437 66.667 13.85 13.85 0.00 6.01
54 55 2.202623 CAGCCCACTAGACGCGTC 60.203 66.667 31.30 31.30 0.00 5.19
55 56 3.450115 AGCCCACTAGACGCGTCC 61.450 66.667 34.08 17.61 0.00 4.79
56 57 3.450115 GCCCACTAGACGCGTCCT 61.450 66.667 34.08 23.01 0.00 3.85
57 58 3.003113 GCCCACTAGACGCGTCCTT 62.003 63.158 34.08 20.24 0.00 3.36
58 59 1.153823 CCCACTAGACGCGTCCTTG 60.154 63.158 34.08 26.05 0.00 3.61
59 60 1.153823 CCACTAGACGCGTCCTTGG 60.154 63.158 34.08 30.13 0.00 3.61
60 61 1.592400 CCACTAGACGCGTCCTTGGA 61.592 60.000 32.52 16.77 0.00 3.53
61 62 0.456221 CACTAGACGCGTCCTTGGAT 59.544 55.000 34.08 17.97 0.00 3.41
62 63 1.674441 CACTAGACGCGTCCTTGGATA 59.326 52.381 34.08 18.13 0.00 2.59
63 64 2.293677 CACTAGACGCGTCCTTGGATAT 59.706 50.000 34.08 16.48 0.00 1.63
64 65 2.957006 ACTAGACGCGTCCTTGGATATT 59.043 45.455 34.08 15.74 0.00 1.28
65 66 2.981859 AGACGCGTCCTTGGATATTT 57.018 45.000 34.08 10.11 0.00 1.40
66 67 2.550978 AGACGCGTCCTTGGATATTTG 58.449 47.619 34.08 0.00 0.00 2.32
67 68 2.093658 AGACGCGTCCTTGGATATTTGT 60.094 45.455 34.08 9.33 0.00 2.83
68 69 2.006888 ACGCGTCCTTGGATATTTGTG 58.993 47.619 5.58 0.00 0.00 3.33
69 70 2.006888 CGCGTCCTTGGATATTTGTGT 58.993 47.619 0.00 0.00 0.00 3.72
70 71 2.223021 CGCGTCCTTGGATATTTGTGTG 60.223 50.000 0.00 0.00 0.00 3.82
71 72 2.477863 GCGTCCTTGGATATTTGTGTGC 60.478 50.000 0.00 0.00 0.00 4.57
72 73 3.009723 CGTCCTTGGATATTTGTGTGCT 58.990 45.455 0.00 0.00 0.00 4.40
73 74 3.181507 CGTCCTTGGATATTTGTGTGCTG 60.182 47.826 0.00 0.00 0.00 4.41
74 75 2.754552 TCCTTGGATATTTGTGTGCTGC 59.245 45.455 0.00 0.00 0.00 5.25
75 76 2.159198 CCTTGGATATTTGTGTGCTGCC 60.159 50.000 0.00 0.00 0.00 4.85
76 77 1.473258 TGGATATTTGTGTGCTGCCC 58.527 50.000 0.00 0.00 0.00 5.36
77 78 1.272369 TGGATATTTGTGTGCTGCCCA 60.272 47.619 0.00 0.00 0.00 5.36
78 79 1.134946 GGATATTTGTGTGCTGCCCAC 59.865 52.381 8.36 8.36 44.90 4.61
79 80 1.134946 GATATTTGTGTGCTGCCCACC 59.865 52.381 12.62 0.00 44.01 4.61
80 81 1.240641 TATTTGTGTGCTGCCCACCG 61.241 55.000 12.62 0.00 44.01 4.94
86 87 4.627801 TGCTGCCCACCGCGTAAA 62.628 61.111 4.92 0.00 42.08 2.01
87 88 4.097863 GCTGCCCACCGCGTAAAC 62.098 66.667 4.92 0.00 42.08 2.01
88 89 3.784412 CTGCCCACCGCGTAAACG 61.784 66.667 4.92 0.00 42.08 3.60
89 90 4.296593 TGCCCACCGCGTAAACGA 62.297 61.111 4.92 0.00 43.02 3.85
90 91 3.781162 GCCCACCGCGTAAACGAC 61.781 66.667 4.92 0.00 43.02 4.34
91 92 3.113979 CCCACCGCGTAAACGACC 61.114 66.667 4.92 0.00 43.02 4.79
92 93 2.048877 CCACCGCGTAAACGACCT 60.049 61.111 4.92 0.00 43.02 3.85
93 94 1.665599 CCACCGCGTAAACGACCTT 60.666 57.895 4.92 0.00 43.02 3.50
94 95 1.620413 CCACCGCGTAAACGACCTTC 61.620 60.000 4.92 0.00 43.02 3.46
95 96 0.940519 CACCGCGTAAACGACCTTCA 60.941 55.000 4.92 0.00 43.02 3.02
96 97 0.249405 ACCGCGTAAACGACCTTCAA 60.249 50.000 4.92 0.00 43.02 2.69
97 98 0.437295 CCGCGTAAACGACCTTCAAG 59.563 55.000 4.92 0.00 43.02 3.02
98 99 1.411394 CGCGTAAACGACCTTCAAGA 58.589 50.000 6.71 0.00 43.02 3.02
99 100 1.990563 CGCGTAAACGACCTTCAAGAT 59.009 47.619 6.71 0.00 43.02 2.40
100 101 2.027688 CGCGTAAACGACCTTCAAGATC 59.972 50.000 6.71 0.00 43.02 2.75
101 102 2.347755 GCGTAAACGACCTTCAAGATCC 59.652 50.000 6.71 0.00 43.02 3.36
102 103 2.597305 CGTAAACGACCTTCAAGATCCG 59.403 50.000 0.00 0.00 43.02 4.18
103 104 2.833631 AAACGACCTTCAAGATCCGT 57.166 45.000 0.00 0.00 0.00 4.69
104 105 2.365408 AACGACCTTCAAGATCCGTC 57.635 50.000 0.00 0.00 0.00 4.79
105 106 1.254026 ACGACCTTCAAGATCCGTCA 58.746 50.000 0.00 0.00 0.00 4.35
106 107 1.825474 ACGACCTTCAAGATCCGTCAT 59.175 47.619 0.00 0.00 0.00 3.06
107 108 2.159226 ACGACCTTCAAGATCCGTCATC 60.159 50.000 0.00 0.00 0.00 2.92
112 113 3.806521 CCTTCAAGATCCGTCATCATCAC 59.193 47.826 0.00 0.00 33.29 3.06
171 172 1.425412 AAAATCCACGACGACCTTCG 58.575 50.000 0.00 0.00 46.93 3.79
181 185 2.717530 GACGACCTTCGCATACACTAG 58.282 52.381 0.00 0.00 45.12 2.57
200 204 4.846940 ACTAGGACAGAACCATTCCTTTCT 59.153 41.667 0.00 0.00 40.42 2.52
317 324 4.871993 CTAATAAAGCACTCACCAGCAG 57.128 45.455 0.00 0.00 0.00 4.24
323 335 0.959372 GCACTCACCAGCAGAGCATT 60.959 55.000 0.00 0.00 36.58 3.56
365 377 2.425592 CTGCGTTCCCACTCACCA 59.574 61.111 0.00 0.00 0.00 4.17
366 378 1.961277 CTGCGTTCCCACTCACCAC 60.961 63.158 0.00 0.00 0.00 4.16
367 379 2.668550 GCGTTCCCACTCACCACC 60.669 66.667 0.00 0.00 0.00 4.61
375 387 0.539051 CCACTCACCACCCATCTCTC 59.461 60.000 0.00 0.00 0.00 3.20
404 420 1.593209 GTCGTCCGCTTTGTGGTGA 60.593 57.895 0.00 0.00 34.40 4.02
405 421 1.593209 TCGTCCGCTTTGTGGTGAC 60.593 57.895 0.00 0.00 34.40 3.67
442 459 2.057830 CCACCTGCACACACCTAGA 58.942 57.895 0.00 0.00 0.00 2.43
446 463 2.299013 CACCTGCACACACCTAGAACTA 59.701 50.000 0.00 0.00 0.00 2.24
462 479 6.547880 CCTAGAACTAGAACTAGAAGGCATCA 59.452 42.308 20.66 0.00 38.53 3.07
467 484 4.099266 CTAGAACTAGAAGGCATCACTGCT 59.901 45.833 0.00 0.00 40.66 4.24
516 533 4.361253 ACGCATGTTTCGTCTGCT 57.639 50.000 0.00 0.00 34.84 4.24
519 536 0.517132 CGCATGTTTCGTCTGCTTCG 60.517 55.000 0.00 0.00 33.75 3.79
520 537 0.790866 GCATGTTTCGTCTGCTTCGC 60.791 55.000 0.00 0.00 33.15 4.70
536 553 4.999939 GCGGCCGGTGCAAGTTTG 63.000 66.667 29.38 0.00 40.13 2.93
538 555 2.909965 GGCCGGTGCAAGTTTGGA 60.910 61.111 1.90 0.00 40.13 3.53
540 557 1.007387 GCCGGTGCAAGTTTGGAAG 60.007 57.895 1.90 0.00 37.47 3.46
541 558 1.452145 GCCGGTGCAAGTTTGGAAGA 61.452 55.000 1.90 0.00 37.47 2.87
545 562 3.115554 CGGTGCAAGTTTGGAAGAAAAG 58.884 45.455 0.00 0.00 0.00 2.27
546 563 3.181491 CGGTGCAAGTTTGGAAGAAAAGA 60.181 43.478 0.00 0.00 0.00 2.52
547 564 4.499696 CGGTGCAAGTTTGGAAGAAAAGAT 60.500 41.667 0.00 0.00 0.00 2.40
574 595 3.660501 TTCCATCCGATAATCTCCACG 57.339 47.619 0.00 0.00 0.00 4.94
576 597 1.000843 CCATCCGATAATCTCCACGCA 59.999 52.381 0.00 0.00 0.00 5.24
578 599 2.971660 TCCGATAATCTCCACGCAAA 57.028 45.000 0.00 0.00 0.00 3.68
593 619 3.798337 CACGCAAAATGATATCCAAAGCC 59.202 43.478 0.00 0.00 0.00 4.35
594 620 3.446873 ACGCAAAATGATATCCAAAGCCA 59.553 39.130 0.00 0.00 0.00 4.75
618 644 1.002274 ACCTCAGCCTCGGATCCTT 59.998 57.895 10.75 0.00 0.00 3.36
624 650 2.828520 TCAGCCTCGGATCCTTGATATC 59.171 50.000 10.75 0.00 0.00 1.63
633 659 4.558697 CGGATCCTTGATATCTTGCGTGTA 60.559 45.833 10.75 0.00 0.00 2.90
662 688 3.693085 TCTGATGGAAGCTGCTTCAATTC 59.307 43.478 35.27 27.63 41.77 2.17
664 690 1.167851 TGGAAGCTGCTTCAATTCCG 58.832 50.000 35.27 0.00 43.43 4.30
689 715 0.318275 GCTAGTCAAGGCTCGATCGG 60.318 60.000 16.41 7.26 0.00 4.18
690 716 0.312416 CTAGTCAAGGCTCGATCGGG 59.688 60.000 16.41 14.14 0.00 5.14
691 717 0.395311 TAGTCAAGGCTCGATCGGGT 60.395 55.000 17.85 0.00 0.00 5.28
692 718 1.227002 GTCAAGGCTCGATCGGGTC 60.227 63.158 12.79 12.79 0.00 4.46
799 834 3.657239 ACAAGGCCACATATCCATCCATA 59.343 43.478 5.01 0.00 0.00 2.74
807 842 4.931601 CACATATCCATCCATACTTGACCG 59.068 45.833 0.00 0.00 0.00 4.79
815 850 3.992643 TCCATACTTGACCGAACGAAAA 58.007 40.909 0.00 0.00 0.00 2.29
946 1007 1.005037 TTACGTGACAGCAGCCTGG 60.005 57.895 0.00 0.00 43.53 4.45
949 1010 1.893808 CGTGACAGCAGCCTGGTTT 60.894 57.895 0.00 0.00 43.53 3.27
956 1017 1.005748 GCAGCCTGGTTTTCTTGCC 60.006 57.895 0.00 0.00 0.00 4.52
957 1018 1.667722 CAGCCTGGTTTTCTTGCCC 59.332 57.895 0.00 0.00 0.00 5.36
968 1029 1.541310 TTCTTGCCCCGATCGTCTGT 61.541 55.000 15.09 0.00 0.00 3.41
1033 1103 2.422945 GGTTCTCCTTCCCTTGTGTTGT 60.423 50.000 0.00 0.00 0.00 3.32
1036 1106 2.241176 TCTCCTTCCCTTGTGTTGTTGT 59.759 45.455 0.00 0.00 0.00 3.32
1524 1621 1.138883 GCTGAGGTACGCGATCACA 59.861 57.895 15.93 5.60 0.00 3.58
2090 2187 1.205820 GGTTCGTTGCGGTAGTTGC 59.794 57.895 0.00 0.00 0.00 4.17
2126 2223 2.229062 TGCTGCTACTGTCACTGTAGAC 59.771 50.000 22.45 14.69 37.86 2.59
2127 2224 2.490115 GCTGCTACTGTCACTGTAGACT 59.510 50.000 22.45 0.00 37.86 3.24
2128 2225 3.690139 GCTGCTACTGTCACTGTAGACTA 59.310 47.826 22.45 9.07 37.86 2.59
2133 2230 3.422796 ACTGTCACTGTAGACTACCTGG 58.577 50.000 10.14 0.00 39.27 4.45
2134 2231 3.181431 ACTGTCACTGTAGACTACCTGGT 60.181 47.826 10.14 4.05 39.27 4.00
2135 2232 3.418995 TGTCACTGTAGACTACCTGGTC 58.581 50.000 0.63 0.00 39.27 4.02
2136 2233 2.754002 GTCACTGTAGACTACCTGGTCC 59.246 54.545 0.63 0.00 36.95 4.46
2137 2234 2.648304 TCACTGTAGACTACCTGGTCCT 59.352 50.000 0.63 1.94 36.95 3.85
2138 2235 3.075582 TCACTGTAGACTACCTGGTCCTT 59.924 47.826 0.63 0.00 36.95 3.36
2139 2236 3.833070 CACTGTAGACTACCTGGTCCTTT 59.167 47.826 0.63 0.00 36.95 3.11
2140 2237 4.283722 CACTGTAGACTACCTGGTCCTTTT 59.716 45.833 0.63 0.00 36.95 2.27
2141 2238 4.283722 ACTGTAGACTACCTGGTCCTTTTG 59.716 45.833 0.63 0.00 36.95 2.44
2142 2239 2.861147 AGACTACCTGGTCCTTTTGC 57.139 50.000 0.63 0.00 36.95 3.68
2143 2240 1.351350 AGACTACCTGGTCCTTTTGCC 59.649 52.381 0.63 0.00 36.95 4.52
2144 2241 1.351350 GACTACCTGGTCCTTTTGCCT 59.649 52.381 0.63 0.00 0.00 4.75
2148 2257 1.228675 CTGGTCCTTTTGCCTGCCT 60.229 57.895 0.00 0.00 0.00 4.75
2248 2368 9.122779 GGTAGATTCTTCTGTACATACTACTGT 57.877 37.037 0.00 0.00 33.17 3.55
2254 2374 8.277490 TCTTCTGTACATACTACTGTAACTGG 57.723 38.462 0.00 0.00 33.59 4.00
2312 2433 8.208224 AGATTACACGGATCACATGGTTTATTA 58.792 33.333 0.00 0.00 0.00 0.98
2339 2460 0.865769 GTCAAACTACCTGGCGTGTG 59.134 55.000 0.00 0.00 0.00 3.82
2340 2461 0.753867 TCAAACTACCTGGCGTGTGA 59.246 50.000 5.71 5.71 0.00 3.58
2341 2462 1.139256 TCAAACTACCTGGCGTGTGAA 59.861 47.619 7.03 0.00 0.00 3.18
2343 2464 0.756903 AACTACCTGGCGTGTGAAGT 59.243 50.000 0.00 0.00 0.00 3.01
2344 2465 1.624336 ACTACCTGGCGTGTGAAGTA 58.376 50.000 0.00 0.00 0.00 2.24
2345 2466 1.965643 ACTACCTGGCGTGTGAAGTAA 59.034 47.619 0.00 0.00 0.00 2.24
2346 2467 2.029290 ACTACCTGGCGTGTGAAGTAAG 60.029 50.000 0.00 0.00 0.00 2.34
2347 2468 0.756903 ACCTGGCGTGTGAAGTAAGT 59.243 50.000 0.00 0.00 0.00 2.24
2348 2469 1.965643 ACCTGGCGTGTGAAGTAAGTA 59.034 47.619 0.00 0.00 0.00 2.24
2349 2470 2.565834 ACCTGGCGTGTGAAGTAAGTAT 59.434 45.455 0.00 0.00 0.00 2.12
2351 2472 3.368013 CCTGGCGTGTGAAGTAAGTATGA 60.368 47.826 0.00 0.00 0.00 2.15
2352 2473 3.845178 TGGCGTGTGAAGTAAGTATGAG 58.155 45.455 0.00 0.00 0.00 2.90
2353 2474 2.603560 GGCGTGTGAAGTAAGTATGAGC 59.396 50.000 0.00 0.00 0.00 4.26
2355 2476 3.548268 GCGTGTGAAGTAAGTATGAGCTC 59.452 47.826 6.82 6.82 0.00 4.09
2356 2477 4.675671 GCGTGTGAAGTAAGTATGAGCTCT 60.676 45.833 16.19 3.04 0.00 4.09
2357 2478 5.031578 CGTGTGAAGTAAGTATGAGCTCTC 58.968 45.833 16.19 5.70 0.00 3.20
2361 2482 8.244802 GTGTGAAGTAAGTATGAGCTCTCTTTA 58.755 37.037 16.19 5.94 0.00 1.85
2362 2483 8.462811 TGTGAAGTAAGTATGAGCTCTCTTTAG 58.537 37.037 16.19 0.00 0.00 1.85
2363 2484 8.463607 GTGAAGTAAGTATGAGCTCTCTTTAGT 58.536 37.037 16.19 8.45 0.00 2.24
2364 2485 9.026121 TGAAGTAAGTATGAGCTCTCTTTAGTT 57.974 33.333 16.19 15.28 0.00 2.24
2365 2486 9.296400 GAAGTAAGTATGAGCTCTCTTTAGTTG 57.704 37.037 16.19 0.00 0.00 3.16
2366 2487 7.777095 AGTAAGTATGAGCTCTCTTTAGTTGG 58.223 38.462 16.19 0.00 0.00 3.77
2367 2488 5.017294 AGTATGAGCTCTCTTTAGTTGGC 57.983 43.478 16.19 0.00 0.00 4.52
2369 2490 3.988976 TGAGCTCTCTTTAGTTGGCAT 57.011 42.857 16.19 0.00 0.00 4.40
2370 2491 3.866651 TGAGCTCTCTTTAGTTGGCATC 58.133 45.455 16.19 0.00 0.00 3.91
2371 2492 3.261643 TGAGCTCTCTTTAGTTGGCATCA 59.738 43.478 16.19 0.00 0.00 3.07
2372 2493 3.870419 GAGCTCTCTTTAGTTGGCATCAG 59.130 47.826 6.43 0.00 0.00 2.90
2373 2494 2.941720 GCTCTCTTTAGTTGGCATCAGG 59.058 50.000 0.00 0.00 0.00 3.86
2375 2496 2.019984 CTCTTTAGTTGGCATCAGGGC 58.980 52.381 0.00 0.00 43.73 5.19
2382 2503 3.595819 GGCATCAGGGCACTGTTC 58.404 61.111 17.28 6.10 45.14 3.18
2383 2504 1.303561 GGCATCAGGGCACTGTTCA 60.304 57.895 17.28 0.00 45.14 3.18
2386 2507 1.135199 GCATCAGGGCACTGTTCAATG 60.135 52.381 17.28 13.24 45.14 2.82
2390 2511 2.040145 TCAGGGCACTGTTCAATGATCA 59.960 45.455 17.28 0.00 45.14 2.92
2391 2512 3.021695 CAGGGCACTGTTCAATGATCAT 58.978 45.455 8.15 1.18 39.92 2.45
2392 2513 3.021695 AGGGCACTGTTCAATGATCATG 58.978 45.455 9.46 3.97 0.00 3.07
2393 2514 2.480759 GGGCACTGTTCAATGATCATGC 60.481 50.000 9.46 7.04 0.00 4.06
2394 2515 2.480759 GGCACTGTTCAATGATCATGCC 60.481 50.000 20.75 20.75 44.11 4.40
2395 2516 2.164827 GCACTGTTCAATGATCATGCCA 59.835 45.455 9.46 3.12 0.00 4.92
2396 2517 3.766151 CACTGTTCAATGATCATGCCAC 58.234 45.455 9.46 6.70 0.00 5.01
2397 2518 3.191791 CACTGTTCAATGATCATGCCACA 59.808 43.478 9.46 10.82 0.00 4.17
2398 2519 3.827876 ACTGTTCAATGATCATGCCACAA 59.172 39.130 9.46 0.00 0.00 3.33
2399 2520 4.082408 ACTGTTCAATGATCATGCCACAAG 60.082 41.667 9.46 6.05 0.00 3.16
2400 2521 3.827876 TGTTCAATGATCATGCCACAAGT 59.172 39.130 9.46 0.00 0.00 3.16
2401 2522 4.171005 GTTCAATGATCATGCCACAAGTG 58.829 43.478 9.46 1.05 0.00 3.16
2416 2537 3.547868 CACAAGTGGATTATGACGAGTCG 59.452 47.826 11.85 11.85 0.00 4.18
2417 2538 2.493713 AGTGGATTATGACGAGTCGC 57.506 50.000 13.59 6.23 0.00 5.19
2438 2559 4.527564 GCGTGAATGGCATACACTATTTC 58.472 43.478 0.00 0.00 33.13 2.17
2447 2569 6.346096 TGGCATACACTATTTCTGTAACTCC 58.654 40.000 0.00 0.00 0.00 3.85
2484 2606 4.643387 GCTGCTGTTGGTCGGGGT 62.643 66.667 0.00 0.00 0.00 4.95
2487 2609 2.112297 GCTGTTGGTCGGGGTTGA 59.888 61.111 0.00 0.00 0.00 3.18
2488 2610 2.258726 GCTGTTGGTCGGGGTTGAC 61.259 63.158 0.00 0.00 38.17 3.18
2528 2824 2.819115 CTATCAGCAACAGCGACTCAT 58.181 47.619 0.00 0.00 0.00 2.90
2538 2834 2.814604 CGACTCATGATCCCGGCA 59.185 61.111 0.00 0.00 0.00 5.69
2569 2865 4.021807 GTCCTATCCGGGAGAGAGAATTTC 60.022 50.000 19.97 1.13 35.74 2.17
2623 2923 2.279935 ATAGTTTGTTTGGTCGCCCA 57.720 45.000 0.00 0.00 39.65 5.36
2678 2978 4.071423 TCATGACTTCCTTTCGCAATTCA 58.929 39.130 0.00 0.00 0.00 2.57
2679 2979 4.154737 TCATGACTTCCTTTCGCAATTCAG 59.845 41.667 0.00 0.00 0.00 3.02
2698 2998 3.572682 TCAGAAGTACAGTTGACGTCCAT 59.427 43.478 14.12 0.00 0.00 3.41
2750 3050 9.695526 CCAGACAAACATCAATGAGAAAAATAA 57.304 29.630 0.00 0.00 0.00 1.40
2754 3054 9.545105 ACAAACATCAATGAGAAAAATAAAGCA 57.455 25.926 0.00 0.00 0.00 3.91
2756 3056 9.985730 AAACATCAATGAGAAAAATAAAGCAGA 57.014 25.926 0.00 0.00 0.00 4.26
2789 3089 1.906574 TGGGAATGTTCGCTTCCTAGT 59.093 47.619 10.54 0.00 41.62 2.57
2790 3090 2.093658 TGGGAATGTTCGCTTCCTAGTC 60.094 50.000 10.54 0.00 41.62 2.59
2793 3093 4.142004 GGGAATGTTCGCTTCCTAGTCTTA 60.142 45.833 2.09 0.00 41.62 2.10
2899 3199 9.486497 CACAGTCATAGTGAATATAATGAAGCT 57.514 33.333 0.00 0.00 39.30 3.74
2900 3200 9.703892 ACAGTCATAGTGAATATAATGAAGCTC 57.296 33.333 0.00 0.00 30.60 4.09
2901 3201 9.149225 CAGTCATAGTGAATATAATGAAGCTCC 57.851 37.037 0.00 0.00 30.60 4.70
2902 3202 8.031864 AGTCATAGTGAATATAATGAAGCTCCG 58.968 37.037 0.00 0.00 30.60 4.63
2903 3203 7.276658 GTCATAGTGAATATAATGAAGCTCCGG 59.723 40.741 0.00 0.00 30.60 5.14
2904 3204 4.319177 AGTGAATATAATGAAGCTCCGGC 58.681 43.478 0.00 0.00 39.06 6.13
2905 3205 4.065088 GTGAATATAATGAAGCTCCGGCA 58.935 43.478 0.00 0.00 41.70 5.69
2906 3206 4.515191 GTGAATATAATGAAGCTCCGGCAA 59.485 41.667 0.00 0.00 41.70 4.52
2907 3207 5.008613 GTGAATATAATGAAGCTCCGGCAAA 59.991 40.000 0.00 0.00 41.70 3.68
2908 3208 5.769662 TGAATATAATGAAGCTCCGGCAAAT 59.230 36.000 0.00 0.00 41.70 2.32
2909 3209 6.939730 TGAATATAATGAAGCTCCGGCAAATA 59.060 34.615 0.00 0.00 41.70 1.40
2910 3210 7.446931 TGAATATAATGAAGCTCCGGCAAATAA 59.553 33.333 0.00 0.00 41.70 1.40
2911 3211 7.944729 ATATAATGAAGCTCCGGCAAATAAT 57.055 32.000 0.00 0.00 41.70 1.28
2912 3212 9.461312 AATATAATGAAGCTCCGGCAAATAATA 57.539 29.630 0.00 0.00 41.70 0.98
2913 3213 7.759489 ATAATGAAGCTCCGGCAAATAATAA 57.241 32.000 0.00 0.00 41.70 1.40
2914 3214 6.655078 AATGAAGCTCCGGCAAATAATAAT 57.345 33.333 0.00 0.00 41.70 1.28
2915 3215 7.759489 AATGAAGCTCCGGCAAATAATAATA 57.241 32.000 0.00 0.00 41.70 0.98
2916 3216 7.759489 ATGAAGCTCCGGCAAATAATAATAA 57.241 32.000 0.00 0.00 41.70 1.40
2917 3217 7.759489 TGAAGCTCCGGCAAATAATAATAAT 57.241 32.000 0.00 0.00 41.70 1.28
2918 3218 8.856153 TGAAGCTCCGGCAAATAATAATAATA 57.144 30.769 0.00 0.00 41.70 0.98
2919 3219 9.290988 TGAAGCTCCGGCAAATAATAATAATAA 57.709 29.630 0.00 0.00 41.70 1.40
2920 3220 9.556030 GAAGCTCCGGCAAATAATAATAATAAC 57.444 33.333 0.00 0.00 41.70 1.89
2921 3221 8.863872 AGCTCCGGCAAATAATAATAATAACT 57.136 30.769 0.00 0.00 41.70 2.24
2922 3222 8.730680 AGCTCCGGCAAATAATAATAATAACTG 58.269 33.333 0.00 0.00 41.70 3.16
2923 3223 8.512138 GCTCCGGCAAATAATAATAATAACTGT 58.488 33.333 0.00 0.00 38.54 3.55
2924 3224 9.825972 CTCCGGCAAATAATAATAATAACTGTG 57.174 33.333 0.00 0.00 0.00 3.66
2925 3225 8.788806 TCCGGCAAATAATAATAATAACTGTGG 58.211 33.333 0.00 0.00 0.00 4.17
2926 3226 8.788806 CCGGCAAATAATAATAATAACTGTGGA 58.211 33.333 0.00 0.00 0.00 4.02
2938 3238 9.807649 AATAATAACTGTGGAAAGATGATTTGC 57.192 29.630 0.00 0.00 0.00 3.68
2939 3239 6.839124 ATAACTGTGGAAAGATGATTTGCA 57.161 33.333 0.00 0.00 0.00 4.08
2940 3240 5.534207 AACTGTGGAAAGATGATTTGCAA 57.466 34.783 0.00 0.00 31.74 4.08
2941 3241 5.733620 ACTGTGGAAAGATGATTTGCAAT 57.266 34.783 0.00 0.00 31.74 3.56
2942 3242 6.839124 ACTGTGGAAAGATGATTTGCAATA 57.161 33.333 0.00 0.00 31.74 1.90
2943 3243 6.624423 ACTGTGGAAAGATGATTTGCAATAC 58.376 36.000 0.00 0.00 31.74 1.89
2944 3244 6.209192 ACTGTGGAAAGATGATTTGCAATACA 59.791 34.615 0.00 4.13 31.74 2.29
2945 3245 6.990798 TGTGGAAAGATGATTTGCAATACAA 58.009 32.000 0.00 0.00 36.13 2.41
2946 3246 7.613585 TGTGGAAAGATGATTTGCAATACAAT 58.386 30.769 0.00 0.00 38.31 2.71
2947 3247 8.747471 TGTGGAAAGATGATTTGCAATACAATA 58.253 29.630 0.00 0.00 38.31 1.90
2948 3248 9.585099 GTGGAAAGATGATTTGCAATACAATAA 57.415 29.630 0.00 0.00 38.31 1.40
2968 3268 4.942761 AATCATTGTATTGATGGGGTGC 57.057 40.909 0.00 0.00 36.48 5.01
2969 3269 3.668141 TCATTGTATTGATGGGGTGCT 57.332 42.857 0.00 0.00 0.00 4.40
2970 3270 3.289836 TCATTGTATTGATGGGGTGCTG 58.710 45.455 0.00 0.00 0.00 4.41
2971 3271 2.142356 TTGTATTGATGGGGTGCTGG 57.858 50.000 0.00 0.00 0.00 4.85
2972 3272 0.998928 TGTATTGATGGGGTGCTGGT 59.001 50.000 0.00 0.00 0.00 4.00
2973 3273 1.340893 TGTATTGATGGGGTGCTGGTG 60.341 52.381 0.00 0.00 0.00 4.17
2974 3274 0.395586 TATTGATGGGGTGCTGGTGC 60.396 55.000 0.00 0.00 40.20 5.01
2990 3290 6.926313 TGCTGGTGCACGTATATATAATACA 58.074 36.000 11.45 0.00 45.31 2.29
2991 3291 7.379750 TGCTGGTGCACGTATATATAATACAA 58.620 34.615 11.45 0.00 45.31 2.41
2992 3292 7.544217 TGCTGGTGCACGTATATATAATACAAG 59.456 37.037 11.45 0.00 45.31 3.16
2993 3293 7.010183 GCTGGTGCACGTATATATAATACAAGG 59.990 40.741 11.45 0.00 39.41 3.61
2994 3294 7.324935 TGGTGCACGTATATATAATACAAGGG 58.675 38.462 11.45 0.00 0.00 3.95
2995 3295 7.178805 TGGTGCACGTATATATAATACAAGGGA 59.821 37.037 11.45 0.00 0.00 4.20
2996 3296 8.036575 GGTGCACGTATATATAATACAAGGGAA 58.963 37.037 11.45 0.00 0.00 3.97
2997 3297 9.084164 GTGCACGTATATATAATACAAGGGAAG 57.916 37.037 0.00 0.00 0.00 3.46
2998 3298 8.255206 TGCACGTATATATAATACAAGGGAAGG 58.745 37.037 0.00 0.00 0.00 3.46
2999 3299 7.224167 GCACGTATATATAATACAAGGGAAGGC 59.776 40.741 0.00 0.00 0.00 4.35
3000 3300 7.709613 CACGTATATATAATACAAGGGAAGGCC 59.290 40.741 0.00 0.00 0.00 5.19
3001 3301 7.622479 ACGTATATATAATACAAGGGAAGGCCT 59.378 37.037 0.00 0.00 0.00 5.19
3002 3302 8.142551 CGTATATATAATACAAGGGAAGGCCTC 58.857 40.741 5.23 0.00 0.00 4.70
3003 3303 9.214962 GTATATATAATACAAGGGAAGGCCTCT 57.785 37.037 5.23 0.00 0.00 3.69
3005 3305 5.827326 ATAATACAAGGGAAGGCCTCTAC 57.173 43.478 5.23 0.03 0.00 2.59
3006 3306 1.875488 TACAAGGGAAGGCCTCTACC 58.125 55.000 5.23 9.20 0.00 3.18
3007 3307 0.119358 ACAAGGGAAGGCCTCTACCT 59.881 55.000 5.23 11.73 43.91 3.08
3008 3308 0.833949 CAAGGGAAGGCCTCTACCTC 59.166 60.000 19.66 7.95 39.93 3.85
3009 3309 0.417841 AAGGGAAGGCCTCTACCTCA 59.582 55.000 19.66 0.00 39.93 3.86
3010 3310 0.417841 AGGGAAGGCCTCTACCTCAA 59.582 55.000 5.23 0.00 39.93 3.02
3011 3311 1.010170 AGGGAAGGCCTCTACCTCAAT 59.990 52.381 5.23 0.00 39.93 2.57
3012 3312 1.847088 GGGAAGGCCTCTACCTCAATT 59.153 52.381 5.23 0.00 39.93 2.32
3013 3313 3.046374 GGGAAGGCCTCTACCTCAATTA 58.954 50.000 5.23 0.00 39.93 1.40
3014 3314 3.653352 GGGAAGGCCTCTACCTCAATTAT 59.347 47.826 5.23 0.00 39.93 1.28
3015 3315 4.844655 GGGAAGGCCTCTACCTCAATTATA 59.155 45.833 5.23 0.00 39.93 0.98
3016 3316 5.280062 GGGAAGGCCTCTACCTCAATTATAC 60.280 48.000 5.23 0.00 39.93 1.47
3017 3317 5.307196 GGAAGGCCTCTACCTCAATTATACA 59.693 44.000 5.23 0.00 39.93 2.29
3018 3318 6.183361 GGAAGGCCTCTACCTCAATTATACAA 60.183 42.308 5.23 0.00 39.93 2.41
3019 3319 6.426646 AGGCCTCTACCTCAATTATACAAG 57.573 41.667 0.00 0.00 33.62 3.16
3020 3320 6.143915 AGGCCTCTACCTCAATTATACAAGA 58.856 40.000 0.00 0.00 33.62 3.02
3021 3321 6.042208 AGGCCTCTACCTCAATTATACAAGAC 59.958 42.308 0.00 0.00 33.62 3.01
3022 3322 6.042208 GGCCTCTACCTCAATTATACAAGACT 59.958 42.308 0.00 0.00 0.00 3.24
3023 3323 7.232941 GGCCTCTACCTCAATTATACAAGACTA 59.767 40.741 0.00 0.00 0.00 2.59
3024 3324 8.301002 GCCTCTACCTCAATTATACAAGACTAG 58.699 40.741 0.00 0.00 0.00 2.57
3025 3325 8.798402 CCTCTACCTCAATTATACAAGACTAGG 58.202 40.741 0.00 0.00 0.00 3.02
3026 3326 9.575868 CTCTACCTCAATTATACAAGACTAGGA 57.424 37.037 0.00 0.00 0.00 2.94
3027 3327 9.575868 TCTACCTCAATTATACAAGACTAGGAG 57.424 37.037 0.00 0.00 0.00 3.69
3028 3328 7.604657 ACCTCAATTATACAAGACTAGGAGG 57.395 40.000 0.00 0.00 42.90 4.30
3029 3329 7.133483 ACCTCAATTATACAAGACTAGGAGGT 58.867 38.462 0.00 0.00 44.72 3.85
3030 3330 7.070074 ACCTCAATTATACAAGACTAGGAGGTG 59.930 40.741 0.00 0.00 46.91 4.00
3031 3331 7.361457 TCAATTATACAAGACTAGGAGGTGG 57.639 40.000 0.00 0.00 0.00 4.61
3032 3332 6.326583 TCAATTATACAAGACTAGGAGGTGGG 59.673 42.308 0.00 0.00 0.00 4.61
3033 3333 3.778622 ATACAAGACTAGGAGGTGGGT 57.221 47.619 0.00 0.00 0.00 4.51
3034 3334 1.939980 ACAAGACTAGGAGGTGGGTC 58.060 55.000 0.00 0.00 0.00 4.46
3035 3335 1.149288 ACAAGACTAGGAGGTGGGTCA 59.851 52.381 0.00 0.00 0.00 4.02
3036 3336 1.550976 CAAGACTAGGAGGTGGGTCAC 59.449 57.143 0.00 0.00 0.00 3.67
3037 3337 0.784495 AGACTAGGAGGTGGGTCACA 59.216 55.000 0.00 0.00 35.86 3.58
3038 3338 1.149288 AGACTAGGAGGTGGGTCACAA 59.851 52.381 0.00 0.00 35.86 3.33
3039 3339 1.275573 GACTAGGAGGTGGGTCACAAC 59.724 57.143 0.00 0.00 35.86 3.32
3043 3343 4.411164 AGGTGGGTCACAACTCCA 57.589 55.556 0.00 0.00 46.59 3.86
3044 3344 2.627771 AGGTGGGTCACAACTCCAA 58.372 52.632 0.00 0.00 46.59 3.53
3045 3345 1.149101 AGGTGGGTCACAACTCCAAT 58.851 50.000 0.00 0.00 46.59 3.16
3046 3346 2.344592 AGGTGGGTCACAACTCCAATA 58.655 47.619 0.00 0.00 46.59 1.90
3047 3347 2.039879 AGGTGGGTCACAACTCCAATAC 59.960 50.000 0.00 0.00 46.59 1.89
3048 3348 2.224670 GGTGGGTCACAACTCCAATACA 60.225 50.000 0.38 0.00 35.86 2.29
3049 3349 2.812011 GTGGGTCACAACTCCAATACAC 59.188 50.000 0.00 0.00 34.08 2.90
3050 3350 2.073816 GGGTCACAACTCCAATACACG 58.926 52.381 0.00 0.00 0.00 4.49
3051 3351 2.549349 GGGTCACAACTCCAATACACGT 60.549 50.000 0.00 0.00 0.00 4.49
3052 3352 2.478894 GGTCACAACTCCAATACACGTG 59.521 50.000 15.48 15.48 0.00 4.49
3053 3353 2.096417 GTCACAACTCCAATACACGTGC 60.096 50.000 17.22 0.00 0.00 5.34
3054 3354 1.870402 CACAACTCCAATACACGTGCA 59.130 47.619 17.22 2.06 0.00 4.57
3055 3355 2.289274 CACAACTCCAATACACGTGCAA 59.711 45.455 17.22 4.26 0.00 4.08
3056 3356 3.058293 CACAACTCCAATACACGTGCAAT 60.058 43.478 17.22 6.83 0.00 3.56
3057 3357 4.153296 CACAACTCCAATACACGTGCAATA 59.847 41.667 17.22 0.36 0.00 1.90
3058 3358 4.153475 ACAACTCCAATACACGTGCAATAC 59.847 41.667 17.22 0.00 0.00 1.89
3059 3359 3.932822 ACTCCAATACACGTGCAATACA 58.067 40.909 17.22 0.00 0.00 2.29
3060 3360 4.320023 ACTCCAATACACGTGCAATACAA 58.680 39.130 17.22 0.00 0.00 2.41
3061 3361 4.757657 ACTCCAATACACGTGCAATACAAA 59.242 37.500 17.22 0.00 0.00 2.83
3062 3362 5.239744 ACTCCAATACACGTGCAATACAAAA 59.760 36.000 17.22 0.00 0.00 2.44
3063 3363 5.453648 TCCAATACACGTGCAATACAAAAC 58.546 37.500 17.22 0.00 0.00 2.43
3064 3364 5.008712 TCCAATACACGTGCAATACAAAACA 59.991 36.000 17.22 0.00 0.00 2.83
3065 3365 5.116377 CCAATACACGTGCAATACAAAACAC 59.884 40.000 17.22 0.00 0.00 3.32
3066 3366 3.766676 ACACGTGCAATACAAAACACA 57.233 38.095 17.22 0.00 33.23 3.72
3067 3367 4.300189 ACACGTGCAATACAAAACACAT 57.700 36.364 17.22 0.00 33.23 3.21
3068 3368 5.425577 ACACGTGCAATACAAAACACATA 57.574 34.783 17.22 0.00 33.23 2.29
3069 3369 5.209240 ACACGTGCAATACAAAACACATAC 58.791 37.500 17.22 0.00 33.23 2.39
3070 3370 5.008217 ACACGTGCAATACAAAACACATACT 59.992 36.000 17.22 0.00 33.23 2.12
3071 3371 5.563751 CACGTGCAATACAAAACACATACTC 59.436 40.000 0.82 0.00 33.23 2.59
3072 3372 5.237561 ACGTGCAATACAAAACACATACTCA 59.762 36.000 0.00 0.00 33.23 3.41
3073 3373 6.139435 CGTGCAATACAAAACACATACTCAA 58.861 36.000 0.00 0.00 33.23 3.02
3074 3374 6.086241 CGTGCAATACAAAACACATACTCAAC 59.914 38.462 0.00 0.00 33.23 3.18
3075 3375 6.915300 GTGCAATACAAAACACATACTCAACA 59.085 34.615 0.00 0.00 33.23 3.33
3076 3376 6.915300 TGCAATACAAAACACATACTCAACAC 59.085 34.615 0.00 0.00 0.00 3.32
3077 3377 6.362283 GCAATACAAAACACATACTCAACACC 59.638 38.462 0.00 0.00 0.00 4.16
3078 3378 4.911514 ACAAAACACATACTCAACACCC 57.088 40.909 0.00 0.00 0.00 4.61
3079 3379 3.634910 ACAAAACACATACTCAACACCCC 59.365 43.478 0.00 0.00 0.00 4.95
3080 3380 2.579410 AACACATACTCAACACCCCC 57.421 50.000 0.00 0.00 0.00 5.40
3106 3406 4.415332 GAAGCGTCGCCGGAGACA 62.415 66.667 33.16 0.13 40.98 3.41
3107 3407 4.719369 AAGCGTCGCCGGAGACAC 62.719 66.667 33.16 25.80 40.98 3.67
3110 3410 3.733960 CGTCGCCGGAGACACAGA 61.734 66.667 33.16 5.80 40.98 3.41
3111 3411 2.179517 GTCGCCGGAGACACAGAG 59.820 66.667 30.48 0.00 40.65 3.35
3112 3412 2.033602 TCGCCGGAGACACAGAGA 59.966 61.111 5.05 0.00 0.00 3.10
3113 3413 2.179517 CGCCGGAGACACAGAGAC 59.820 66.667 5.05 0.00 0.00 3.36
3114 3414 2.336478 CGCCGGAGACACAGAGACT 61.336 63.158 5.05 0.00 0.00 3.24
3115 3415 1.214062 GCCGGAGACACAGAGACTG 59.786 63.158 5.05 0.00 37.52 3.51
3116 3416 1.886585 CCGGAGACACAGAGACTGG 59.113 63.158 0.00 0.00 35.51 4.00
3117 3417 0.609406 CCGGAGACACAGAGACTGGA 60.609 60.000 0.00 0.00 35.51 3.86
3118 3418 0.523966 CGGAGACACAGAGACTGGAC 59.476 60.000 0.00 0.00 35.51 4.02
3119 3419 0.892063 GGAGACACAGAGACTGGACC 59.108 60.000 0.00 0.00 35.51 4.46
3120 3420 0.523966 GAGACACAGAGACTGGACCG 59.476 60.000 0.00 0.00 35.51 4.79
3121 3421 0.110678 AGACACAGAGACTGGACCGA 59.889 55.000 0.00 0.00 35.51 4.69
3122 3422 0.959553 GACACAGAGACTGGACCGAA 59.040 55.000 0.00 0.00 35.51 4.30
3123 3423 1.340248 GACACAGAGACTGGACCGAAA 59.660 52.381 0.00 0.00 35.51 3.46
3124 3424 1.068741 ACACAGAGACTGGACCGAAAC 59.931 52.381 0.00 0.00 35.51 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.469754 TAGTGCGATCGAGCGGCTG 62.470 63.158 25.73 0.00 40.67 4.85
14 15 3.187699 CTAGTGCGATCGAGCGGCT 62.188 63.158 25.73 0.00 40.67 5.52
15 16 2.727647 CTAGTGCGATCGAGCGGC 60.728 66.667 25.73 17.00 40.67 6.53
16 17 1.655654 CACTAGTGCGATCGAGCGG 60.656 63.158 25.73 10.01 40.67 5.52
17 18 1.655654 CCACTAGTGCGATCGAGCG 60.656 63.158 20.40 20.40 40.67 5.03
18 19 1.299468 CCCACTAGTGCGATCGAGC 60.299 63.158 21.57 10.34 37.71 5.03
19 20 1.299468 GCCCACTAGTGCGATCGAG 60.299 63.158 21.57 9.80 0.00 4.04
20 21 2.004808 CTGCCCACTAGTGCGATCGA 62.005 60.000 21.57 0.59 0.00 3.59
21 22 1.589993 CTGCCCACTAGTGCGATCG 60.590 63.158 17.86 11.69 0.00 3.69
22 23 1.884926 GCTGCCCACTAGTGCGATC 60.885 63.158 17.86 6.20 0.00 3.69
23 24 2.187946 GCTGCCCACTAGTGCGAT 59.812 61.111 17.86 0.00 0.00 4.58
24 25 4.082523 GGCTGCCCACTAGTGCGA 62.083 66.667 17.86 2.14 0.00 5.10
34 35 4.840005 GCGTCTAGTGGGCTGCCC 62.840 72.222 30.97 30.97 45.71 5.36
36 37 4.436998 ACGCGTCTAGTGGGCTGC 62.437 66.667 5.58 0.00 33.90 5.25
37 38 2.202623 GACGCGTCTAGTGGGCTG 60.203 66.667 31.12 0.00 33.90 4.85
38 39 3.450115 GGACGCGTCTAGTGGGCT 61.450 66.667 35.50 0.00 33.90 5.19
39 40 3.003113 AAGGACGCGTCTAGTGGGC 62.003 63.158 35.50 18.86 33.90 5.36
40 41 1.153823 CAAGGACGCGTCTAGTGGG 60.154 63.158 35.50 17.05 33.90 4.61
41 42 1.153823 CCAAGGACGCGTCTAGTGG 60.154 63.158 35.50 31.53 33.90 4.00
42 43 0.456221 ATCCAAGGACGCGTCTAGTG 59.544 55.000 35.50 27.80 0.00 2.74
43 44 2.048444 TATCCAAGGACGCGTCTAGT 57.952 50.000 35.50 19.56 0.00 2.57
44 45 3.644884 AATATCCAAGGACGCGTCTAG 57.355 47.619 35.50 24.55 0.00 2.43
45 46 3.131577 ACAAATATCCAAGGACGCGTCTA 59.868 43.478 35.50 20.73 0.00 2.59
46 47 2.093658 ACAAATATCCAAGGACGCGTCT 60.094 45.455 35.50 20.42 0.00 4.18
47 48 2.030457 CACAAATATCCAAGGACGCGTC 59.970 50.000 30.67 30.67 0.00 5.19
48 49 2.006888 CACAAATATCCAAGGACGCGT 58.993 47.619 13.85 13.85 0.00 6.01
49 50 2.006888 ACACAAATATCCAAGGACGCG 58.993 47.619 3.53 3.53 0.00 6.01
50 51 2.477863 GCACACAAATATCCAAGGACGC 60.478 50.000 0.00 0.00 0.00 5.19
51 52 3.009723 AGCACACAAATATCCAAGGACG 58.990 45.455 0.00 0.00 0.00 4.79
52 53 3.428045 GCAGCACACAAATATCCAAGGAC 60.428 47.826 0.00 0.00 0.00 3.85
53 54 2.754552 GCAGCACACAAATATCCAAGGA 59.245 45.455 0.00 0.00 0.00 3.36
54 55 2.159198 GGCAGCACACAAATATCCAAGG 60.159 50.000 0.00 0.00 0.00 3.61
55 56 2.159198 GGGCAGCACACAAATATCCAAG 60.159 50.000 0.00 0.00 0.00 3.61
56 57 1.824230 GGGCAGCACACAAATATCCAA 59.176 47.619 0.00 0.00 0.00 3.53
57 58 1.272369 TGGGCAGCACACAAATATCCA 60.272 47.619 0.00 0.00 0.00 3.41
58 59 1.134946 GTGGGCAGCACACAAATATCC 59.865 52.381 23.60 0.00 38.67 2.59
59 60 1.134946 GGTGGGCAGCACACAAATATC 59.865 52.381 28.96 6.92 40.54 1.63
60 61 1.185315 GGTGGGCAGCACACAAATAT 58.815 50.000 28.96 0.00 40.54 1.28
61 62 1.240641 CGGTGGGCAGCACACAAATA 61.241 55.000 28.96 0.00 40.54 1.40
62 63 2.563798 CGGTGGGCAGCACACAAAT 61.564 57.895 28.96 0.00 40.54 2.32
63 64 3.215568 CGGTGGGCAGCACACAAA 61.216 61.111 28.96 0.00 40.54 2.83
69 70 4.627801 TTTACGCGGTGGGCAGCA 62.628 61.111 12.47 0.00 43.84 4.41
70 71 4.097863 GTTTACGCGGTGGGCAGC 62.098 66.667 12.47 0.00 43.84 5.25
71 72 3.784412 CGTTTACGCGGTGGGCAG 61.784 66.667 12.47 0.00 43.84 4.85
72 73 4.296593 TCGTTTACGCGGTGGGCA 62.297 61.111 12.47 0.00 43.84 5.36
73 74 3.781162 GTCGTTTACGCGGTGGGC 61.781 66.667 12.47 0.00 39.60 5.36
74 75 3.113979 GGTCGTTTACGCGGTGGG 61.114 66.667 12.47 0.00 39.60 4.61
75 76 1.620413 GAAGGTCGTTTACGCGGTGG 61.620 60.000 12.47 0.00 39.60 4.61
76 77 0.940519 TGAAGGTCGTTTACGCGGTG 60.941 55.000 12.47 0.00 39.60 4.94
77 78 0.249405 TTGAAGGTCGTTTACGCGGT 60.249 50.000 12.47 0.00 39.60 5.68
78 79 0.437295 CTTGAAGGTCGTTTACGCGG 59.563 55.000 12.47 0.00 39.60 6.46
79 80 1.411394 TCTTGAAGGTCGTTTACGCG 58.589 50.000 3.53 3.53 39.60 6.01
80 81 2.347755 GGATCTTGAAGGTCGTTTACGC 59.652 50.000 0.00 0.00 39.60 4.42
81 82 2.597305 CGGATCTTGAAGGTCGTTTACG 59.403 50.000 0.00 0.00 41.45 3.18
82 83 3.582780 ACGGATCTTGAAGGTCGTTTAC 58.417 45.455 0.00 0.00 0.00 2.01
83 84 3.256383 TGACGGATCTTGAAGGTCGTTTA 59.744 43.478 0.00 0.00 0.00 2.01
84 85 2.036733 TGACGGATCTTGAAGGTCGTTT 59.963 45.455 0.00 0.00 0.00 3.60
85 86 1.616865 TGACGGATCTTGAAGGTCGTT 59.383 47.619 0.00 0.00 0.00 3.85
86 87 1.254026 TGACGGATCTTGAAGGTCGT 58.746 50.000 0.00 3.99 0.00 4.34
87 88 2.159240 TGATGACGGATCTTGAAGGTCG 60.159 50.000 0.00 0.83 31.55 4.79
88 89 3.526931 TGATGACGGATCTTGAAGGTC 57.473 47.619 0.00 0.00 31.55 3.85
89 90 3.452264 TGATGATGACGGATCTTGAAGGT 59.548 43.478 0.00 0.00 31.55 3.50
90 91 3.806521 GTGATGATGACGGATCTTGAAGG 59.193 47.826 0.00 0.00 31.55 3.46
91 92 3.488678 CGTGATGATGACGGATCTTGAAG 59.511 47.826 0.00 0.00 33.08 3.02
92 93 3.447742 CGTGATGATGACGGATCTTGAA 58.552 45.455 0.00 0.00 33.08 2.69
93 94 3.084070 CGTGATGATGACGGATCTTGA 57.916 47.619 0.00 0.00 33.08 3.02
101 102 0.460109 TGAAGCCCGTGATGATGACG 60.460 55.000 0.00 0.00 36.56 4.35
102 103 1.737838 TTGAAGCCCGTGATGATGAC 58.262 50.000 0.00 0.00 0.00 3.06
103 104 2.358957 CTTTGAAGCCCGTGATGATGA 58.641 47.619 0.00 0.00 0.00 2.92
104 105 1.202222 GCTTTGAAGCCCGTGATGATG 60.202 52.381 4.38 0.00 46.20 3.07
105 106 1.098050 GCTTTGAAGCCCGTGATGAT 58.902 50.000 4.38 0.00 46.20 2.45
106 107 2.555123 GCTTTGAAGCCCGTGATGA 58.445 52.632 4.38 0.00 46.20 2.92
171 172 3.887621 TGGTTCTGTCCTAGTGTATGC 57.112 47.619 0.00 0.00 0.00 3.14
181 185 4.021102 TGAGAAAGGAATGGTTCTGTCC 57.979 45.455 0.00 0.00 0.00 4.02
200 204 8.121305 AGATAAGCCATGTTGTTGTTAAATGA 57.879 30.769 0.00 0.00 0.00 2.57
308 315 1.246056 GCCAAATGCTCTGCTGGTGA 61.246 55.000 0.00 0.00 36.87 4.02
365 377 2.234908 CGGTTGAAAGAGAGAGATGGGT 59.765 50.000 0.00 0.00 0.00 4.51
366 378 2.234908 ACGGTTGAAAGAGAGAGATGGG 59.765 50.000 0.00 0.00 0.00 4.00
367 379 3.516615 GACGGTTGAAAGAGAGAGATGG 58.483 50.000 0.00 0.00 0.00 3.51
375 387 1.615107 GCGGACGACGGTTGAAAGAG 61.615 60.000 1.53 0.00 44.51 2.85
405 421 4.957691 TGGCCTACCTTCCTGCTCTAGG 62.958 59.091 3.32 0.00 41.95 3.02
424 441 0.396435 TTCTAGGTGTGTGCAGGTGG 59.604 55.000 0.00 0.00 0.00 4.61
442 459 5.625656 GCAGTGATGCCTTCTAGTTCTAGTT 60.626 44.000 0.00 0.00 0.00 2.24
446 463 2.836981 AGCAGTGATGCCTTCTAGTTCT 59.163 45.455 0.00 0.00 34.90 3.01
462 479 3.930336 TCGTCAATCAGAAATCAGCAGT 58.070 40.909 0.00 0.00 0.00 4.40
467 484 3.436704 GGCAACTCGTCAATCAGAAATCA 59.563 43.478 0.00 0.00 0.00 2.57
471 488 1.000394 TCGGCAACTCGTCAATCAGAA 60.000 47.619 0.00 0.00 0.00 3.02
519 536 4.999939 CAAACTTGCACCGGCCGC 63.000 66.667 22.85 6.95 40.13 6.53
520 537 4.341502 CCAAACTTGCACCGGCCG 62.342 66.667 21.04 21.04 40.13 6.13
545 562 7.333174 GGAGATTATCGGATGGAAAAGAAGATC 59.667 40.741 0.00 0.00 0.00 2.75
546 563 7.164803 GGAGATTATCGGATGGAAAAGAAGAT 58.835 38.462 0.00 0.00 0.00 2.40
547 564 6.099701 TGGAGATTATCGGATGGAAAAGAAGA 59.900 38.462 0.00 0.00 0.00 2.87
551 571 4.449068 CGTGGAGATTATCGGATGGAAAAG 59.551 45.833 0.00 0.00 0.00 2.27
555 575 1.272490 GCGTGGAGATTATCGGATGGA 59.728 52.381 0.00 0.00 0.00 3.41
574 595 3.805971 GCTGGCTTTGGATATCATTTTGC 59.194 43.478 4.83 2.16 0.00 3.68
576 597 5.364446 TCATGCTGGCTTTGGATATCATTTT 59.636 36.000 4.83 0.00 0.00 1.82
578 599 4.280174 GTCATGCTGGCTTTGGATATCATT 59.720 41.667 4.83 0.00 0.00 2.57
593 619 1.521010 CGAGGCTGAGGTCATGCTG 60.521 63.158 0.00 0.00 0.00 4.41
594 620 2.729479 CCGAGGCTGAGGTCATGCT 61.729 63.158 0.00 0.00 0.00 3.79
618 644 6.865205 CAGATTGATCTACACGCAAGATATCA 59.135 38.462 5.32 0.00 36.52 2.15
624 650 4.210746 CCATCAGATTGATCTACACGCAAG 59.789 45.833 0.00 0.00 34.28 4.01
633 659 3.136809 AGCAGCTTCCATCAGATTGATCT 59.863 43.478 0.00 0.00 34.28 2.75
662 688 0.318762 GCCTTGACTAGCTATCCCGG 59.681 60.000 0.00 0.00 0.00 5.73
664 690 1.271102 CGAGCCTTGACTAGCTATCCC 59.729 57.143 0.00 0.00 40.11 3.85
699 725 1.081175 GTTGGAAGCAGCGCCTTTC 60.081 57.895 2.29 5.63 0.00 2.62
707 733 2.045926 CTCCGGGGTTGGAAGCAG 60.046 66.667 0.00 0.00 37.64 4.24
722 754 0.798771 GACGTGACAGATGACGGCTC 60.799 60.000 0.00 0.00 40.60 4.70
747 779 2.986311 GTTGCTGTCAACCTGTCGA 58.014 52.632 4.34 0.00 45.15 4.20
799 834 2.096335 GGTGTTTTTCGTTCGGTCAAGT 59.904 45.455 0.00 0.00 0.00 3.16
807 842 2.352342 TCCGAGTTGGTGTTTTTCGTTC 59.648 45.455 0.00 0.00 39.52 3.95
815 850 1.871039 CGAAATGTCCGAGTTGGTGTT 59.129 47.619 0.00 0.00 39.52 3.32
908 969 1.757346 GCTTTAAGGCTCGCTCGCTC 61.757 60.000 1.67 0.00 0.00 5.03
909 970 1.811679 GCTTTAAGGCTCGCTCGCT 60.812 57.895 1.67 0.00 0.00 4.93
916 977 3.323243 TGTCACGTAAGCTTTAAGGCTC 58.677 45.455 13.02 0.31 42.24 4.70
946 1007 0.446616 GACGATCGGGGCAAGAAAAC 59.553 55.000 20.98 0.00 0.00 2.43
949 1010 1.218047 CAGACGATCGGGGCAAGAA 59.782 57.895 20.98 0.00 0.00 2.52
956 1017 1.405463 TGAGATGAACAGACGATCGGG 59.595 52.381 20.98 10.94 0.00 5.14
957 1018 2.851805 TGAGATGAACAGACGATCGG 57.148 50.000 20.98 4.02 0.00 4.18
968 1029 6.096001 TCGATGAAGTCTTGAGATGAGATGAA 59.904 38.462 0.00 0.00 0.00 2.57
1033 1103 1.747145 CCATGGCAGCAACCAACAA 59.253 52.632 0.00 0.00 44.65 2.83
1036 1106 3.682885 CGCCATGGCAGCAACCAA 61.683 61.111 34.93 0.00 44.65 3.67
1449 1546 1.515736 GTACGTGTAGAGGTGCCGC 60.516 63.158 0.00 0.00 0.00 6.53
1638 1735 1.883084 GATGGTGATGTCGGCGTCC 60.883 63.158 6.80 0.00 0.00 4.79
1977 2074 1.524008 CGCCCTTGAAGTTGGGGTTC 61.524 60.000 0.00 0.00 43.53 3.62
2109 2206 4.095185 CAGGTAGTCTACAGTGACAGTAGC 59.905 50.000 12.08 6.02 39.00 3.58
2126 2223 1.826385 CAGGCAAAAGGACCAGGTAG 58.174 55.000 0.00 0.00 0.00 3.18
2127 2224 0.251165 GCAGGCAAAAGGACCAGGTA 60.251 55.000 0.00 0.00 0.00 3.08
2128 2225 1.531602 GCAGGCAAAAGGACCAGGT 60.532 57.895 0.00 0.00 0.00 4.00
2133 2230 2.335712 CGGAGGCAGGCAAAAGGAC 61.336 63.158 0.00 0.00 0.00 3.85
2134 2231 2.034066 CGGAGGCAGGCAAAAGGA 59.966 61.111 0.00 0.00 0.00 3.36
2135 2232 2.282462 ACGGAGGCAGGCAAAAGG 60.282 61.111 0.00 0.00 0.00 3.11
2136 2233 1.600636 TCACGGAGGCAGGCAAAAG 60.601 57.895 0.00 0.00 0.00 2.27
2137 2234 1.896660 GTCACGGAGGCAGGCAAAA 60.897 57.895 0.00 0.00 0.00 2.44
2138 2235 2.281484 GTCACGGAGGCAGGCAAA 60.281 61.111 0.00 0.00 0.00 3.68
2139 2236 4.680237 CGTCACGGAGGCAGGCAA 62.680 66.667 0.00 0.00 0.00 4.52
2249 2369 9.461312 TCTGTATACTAAAAATCAATGCCAGTT 57.539 29.630 4.17 0.00 0.00 3.16
2250 2370 9.461312 TTCTGTATACTAAAAATCAATGCCAGT 57.539 29.630 4.17 0.00 0.00 4.00
2312 2433 3.821033 GCCAGGTAGTTTGACACTGAAAT 59.179 43.478 0.00 0.00 35.97 2.17
2328 2449 0.756903 ACTTACTTCACACGCCAGGT 59.243 50.000 0.00 0.00 0.00 4.00
2332 2453 2.603560 GCTCATACTTACTTCACACGCC 59.396 50.000 0.00 0.00 0.00 5.68
2339 2460 9.296400 CAACTAAAGAGAGCTCATACTTACTTC 57.704 37.037 17.77 0.76 0.00 3.01
2340 2461 8.254508 CCAACTAAAGAGAGCTCATACTTACTT 58.745 37.037 17.77 6.58 0.00 2.24
2341 2462 7.631811 GCCAACTAAAGAGAGCTCATACTTACT 60.632 40.741 17.77 7.04 0.00 2.24
2343 2464 6.154534 TGCCAACTAAAGAGAGCTCATACTTA 59.845 38.462 17.77 6.91 0.00 2.24
2344 2465 5.046304 TGCCAACTAAAGAGAGCTCATACTT 60.046 40.000 17.77 14.68 0.00 2.24
2345 2466 4.467795 TGCCAACTAAAGAGAGCTCATACT 59.532 41.667 17.77 9.29 0.00 2.12
2346 2467 4.759782 TGCCAACTAAAGAGAGCTCATAC 58.240 43.478 17.77 6.98 0.00 2.39
2347 2468 5.129320 TGATGCCAACTAAAGAGAGCTCATA 59.871 40.000 17.77 2.60 0.00 2.15
2348 2469 3.988976 TGCCAACTAAAGAGAGCTCAT 57.011 42.857 17.77 0.20 0.00 2.90
2349 2470 3.261643 TGATGCCAACTAAAGAGAGCTCA 59.738 43.478 17.77 0.00 0.00 4.26
2351 2472 3.370315 CCTGATGCCAACTAAAGAGAGCT 60.370 47.826 0.00 0.00 0.00 4.09
2352 2473 2.941720 CCTGATGCCAACTAAAGAGAGC 59.058 50.000 0.00 0.00 0.00 4.09
2353 2474 3.539604 CCCTGATGCCAACTAAAGAGAG 58.460 50.000 0.00 0.00 0.00 3.20
2355 2476 2.019984 GCCCTGATGCCAACTAAAGAG 58.980 52.381 0.00 0.00 0.00 2.85
2356 2477 1.354031 TGCCCTGATGCCAACTAAAGA 59.646 47.619 0.00 0.00 0.00 2.52
2357 2478 1.474077 GTGCCCTGATGCCAACTAAAG 59.526 52.381 0.00 0.00 0.00 1.85
2361 2482 1.303888 CAGTGCCCTGATGCCAACT 60.304 57.895 0.00 0.00 41.50 3.16
2362 2483 1.181098 AACAGTGCCCTGATGCCAAC 61.181 55.000 2.19 0.00 41.50 3.77
2363 2484 0.895100 GAACAGTGCCCTGATGCCAA 60.895 55.000 2.19 0.00 41.50 4.52
2364 2485 1.303561 GAACAGTGCCCTGATGCCA 60.304 57.895 2.19 0.00 41.50 4.92
2365 2486 0.895100 TTGAACAGTGCCCTGATGCC 60.895 55.000 2.19 0.00 41.50 4.40
2366 2487 1.135199 CATTGAACAGTGCCCTGATGC 60.135 52.381 2.19 0.00 41.50 3.91
2367 2488 2.439409 TCATTGAACAGTGCCCTGATG 58.561 47.619 2.19 0.00 41.50 3.07
2369 2490 2.040145 TGATCATTGAACAGTGCCCTGA 59.960 45.455 2.19 0.00 41.50 3.86
2370 2491 2.439409 TGATCATTGAACAGTGCCCTG 58.561 47.619 0.00 0.00 44.68 4.45
2371 2492 2.885135 TGATCATTGAACAGTGCCCT 57.115 45.000 0.00 0.00 0.00 5.19
2372 2493 2.480759 GCATGATCATTGAACAGTGCCC 60.481 50.000 5.16 0.00 0.00 5.36
2373 2494 2.480759 GGCATGATCATTGAACAGTGCC 60.481 50.000 22.10 22.10 43.29 5.01
2375 2496 3.191791 TGTGGCATGATCATTGAACAGTG 59.808 43.478 5.16 0.00 0.00 3.66
2376 2497 3.423749 TGTGGCATGATCATTGAACAGT 58.576 40.909 5.16 0.00 0.00 3.55
2378 2499 3.827876 ACTTGTGGCATGATCATTGAACA 59.172 39.130 5.16 7.66 0.00 3.18
2379 2500 4.171005 CACTTGTGGCATGATCATTGAAC 58.829 43.478 5.16 5.06 0.00 3.18
2380 2501 3.193903 CCACTTGTGGCATGATCATTGAA 59.806 43.478 5.16 0.00 0.00 2.69
2381 2502 2.756207 CCACTTGTGGCATGATCATTGA 59.244 45.455 5.16 0.00 0.00 2.57
2382 2503 2.756207 TCCACTTGTGGCATGATCATTG 59.244 45.455 14.49 3.21 0.00 2.82
2383 2504 3.090210 TCCACTTGTGGCATGATCATT 57.910 42.857 14.49 0.00 0.00 2.57
2386 2507 4.823442 TCATAATCCACTTGTGGCATGATC 59.177 41.667 14.49 0.00 0.00 2.92
2390 2511 2.945008 CGTCATAATCCACTTGTGGCAT 59.055 45.455 14.49 8.32 30.61 4.40
2391 2512 2.027653 TCGTCATAATCCACTTGTGGCA 60.028 45.455 14.49 4.92 30.61 4.92
2392 2513 2.609459 CTCGTCATAATCCACTTGTGGC 59.391 50.000 14.49 0.00 0.00 5.01
2393 2514 3.861840 ACTCGTCATAATCCACTTGTGG 58.138 45.455 13.24 13.24 0.00 4.17
2394 2515 3.547868 CGACTCGTCATAATCCACTTGTG 59.452 47.826 0.00 0.00 0.00 3.33
2395 2516 3.770666 CGACTCGTCATAATCCACTTGT 58.229 45.455 0.00 0.00 0.00 3.16
2396 2517 2.535984 GCGACTCGTCATAATCCACTTG 59.464 50.000 0.00 0.00 0.00 3.16
2397 2518 2.794981 CGCGACTCGTCATAATCCACTT 60.795 50.000 0.00 0.00 0.00 3.16
2398 2519 1.268589 CGCGACTCGTCATAATCCACT 60.269 52.381 0.00 0.00 0.00 4.00
2399 2520 1.121240 CGCGACTCGTCATAATCCAC 58.879 55.000 0.00 0.00 0.00 4.02
2400 2521 3.544615 CGCGACTCGTCATAATCCA 57.455 52.632 0.00 0.00 0.00 3.41
2410 2531 0.869880 TATGCCATTCACGCGACTCG 60.870 55.000 15.93 0.00 45.38 4.18
2411 2532 0.577269 GTATGCCATTCACGCGACTC 59.423 55.000 15.93 0.00 0.00 3.36
2412 2533 0.108377 TGTATGCCATTCACGCGACT 60.108 50.000 15.93 0.00 0.00 4.18
2413 2534 0.026285 GTGTATGCCATTCACGCGAC 59.974 55.000 15.93 0.00 0.00 5.19
2414 2535 0.108377 AGTGTATGCCATTCACGCGA 60.108 50.000 15.93 0.00 35.94 5.87
2415 2536 1.566404 TAGTGTATGCCATTCACGCG 58.434 50.000 3.53 3.53 35.94 6.01
2416 2537 4.273480 AGAAATAGTGTATGCCATTCACGC 59.727 41.667 8.54 0.00 35.94 5.34
2417 2538 5.294306 ACAGAAATAGTGTATGCCATTCACG 59.706 40.000 8.54 0.00 35.94 4.35
2418 2539 6.683974 ACAGAAATAGTGTATGCCATTCAC 57.316 37.500 6.35 6.35 0.00 3.18
2419 2540 8.046708 AGTTACAGAAATAGTGTATGCCATTCA 58.953 33.333 0.00 0.00 30.54 2.57
2447 2569 0.675522 AACTACCATTTGGCCGGACG 60.676 55.000 5.05 0.00 39.32 4.79
2484 2606 0.907704 ATACGGCACCCAGAGGTCAA 60.908 55.000 0.00 0.00 46.45 3.18
2488 2610 1.443407 CTGATACGGCACCCAGAGG 59.557 63.158 0.00 0.00 40.04 3.69
2538 2834 1.828660 CCGGATAGGACAGACGCCT 60.829 63.158 0.00 0.00 45.00 5.52
2597 2893 5.978322 GGCGACCAAACAAACTATTAACAAA 59.022 36.000 0.00 0.00 0.00 2.83
2623 2923 0.677731 CGTGCATGGACCAAGTGGAT 60.678 55.000 12.15 0.00 38.94 3.41
2678 2978 3.572682 TGATGGACGTCAACTGTACTTCT 59.427 43.478 18.91 0.00 0.00 2.85
2679 2979 3.909430 TGATGGACGTCAACTGTACTTC 58.091 45.455 18.91 6.31 0.00 3.01
2698 2998 3.371965 GGTGACTGGGTAGGTATTCTGA 58.628 50.000 0.00 0.00 0.00 3.27
2754 3054 1.909700 TCCCAGCGCAGAATTTTTCT 58.090 45.000 11.47 0.00 41.70 2.52
2755 3055 2.723124 TTCCCAGCGCAGAATTTTTC 57.277 45.000 11.47 0.00 0.00 2.29
2756 3056 2.299867 ACATTCCCAGCGCAGAATTTTT 59.700 40.909 11.47 0.00 30.29 1.94
2761 3061 1.298157 CGAACATTCCCAGCGCAGAA 61.298 55.000 11.47 10.28 0.00 3.02
2770 3070 2.168728 AGACTAGGAAGCGAACATTCCC 59.831 50.000 1.18 0.00 46.24 3.97
2771 3071 3.528597 AGACTAGGAAGCGAACATTCC 57.471 47.619 0.00 0.00 45.56 3.01
2789 3089 3.614588 CGTGAGCGTTCGATACATAAGA 58.385 45.455 0.00 0.00 0.00 2.10
2814 3114 2.956333 GCTCAACTACCCAACCAAAACT 59.044 45.455 0.00 0.00 0.00 2.66
2816 3116 3.019799 TGCTCAACTACCCAACCAAAA 57.980 42.857 0.00 0.00 0.00 2.44
2881 3181 5.011635 TGCCGGAGCTTCATTATATTCACTA 59.988 40.000 5.05 0.00 40.80 2.74
2892 3192 7.759489 TTATTATTATTTGCCGGAGCTTCAT 57.241 32.000 5.05 0.00 40.80 2.57
2899 3199 8.788806 CCACAGTTATTATTATTATTTGCCGGA 58.211 33.333 5.05 0.00 0.00 5.14
2900 3200 8.788806 TCCACAGTTATTATTATTATTTGCCGG 58.211 33.333 0.00 0.00 0.00 6.13
2912 3212 9.807649 GCAAATCATCTTTCCACAGTTATTATT 57.192 29.630 0.00 0.00 0.00 1.40
2913 3213 8.970020 TGCAAATCATCTTTCCACAGTTATTAT 58.030 29.630 0.00 0.00 0.00 1.28
2914 3214 8.347004 TGCAAATCATCTTTCCACAGTTATTA 57.653 30.769 0.00 0.00 0.00 0.98
2915 3215 7.230849 TGCAAATCATCTTTCCACAGTTATT 57.769 32.000 0.00 0.00 0.00 1.40
2916 3216 6.839124 TGCAAATCATCTTTCCACAGTTAT 57.161 33.333 0.00 0.00 0.00 1.89
2917 3217 6.647334 TTGCAAATCATCTTTCCACAGTTA 57.353 33.333 0.00 0.00 0.00 2.24
2918 3218 5.534207 TTGCAAATCATCTTTCCACAGTT 57.466 34.783 0.00 0.00 0.00 3.16
2919 3219 5.733620 ATTGCAAATCATCTTTCCACAGT 57.266 34.783 1.71 0.00 0.00 3.55
2920 3220 6.623486 TGTATTGCAAATCATCTTTCCACAG 58.377 36.000 1.71 0.00 0.00 3.66
2921 3221 6.587206 TGTATTGCAAATCATCTTTCCACA 57.413 33.333 1.71 0.00 0.00 4.17
2922 3222 9.585099 TTATTGTATTGCAAATCATCTTTCCAC 57.415 29.630 1.71 0.00 40.91 4.02
2944 3244 6.783977 AGCACCCCATCAATACAATGATTATT 59.216 34.615 0.00 0.00 37.96 1.40
2945 3245 6.209986 CAGCACCCCATCAATACAATGATTAT 59.790 38.462 0.00 0.00 37.96 1.28
2946 3246 5.535783 CAGCACCCCATCAATACAATGATTA 59.464 40.000 0.00 0.00 37.96 1.75
2947 3247 4.342951 CAGCACCCCATCAATACAATGATT 59.657 41.667 0.00 0.00 37.96 2.57
2948 3248 3.893200 CAGCACCCCATCAATACAATGAT 59.107 43.478 0.00 0.00 40.64 2.45
2949 3249 3.289836 CAGCACCCCATCAATACAATGA 58.710 45.455 0.00 0.00 0.00 2.57
2950 3250 2.363038 CCAGCACCCCATCAATACAATG 59.637 50.000 0.00 0.00 0.00 2.82
2951 3251 2.024080 ACCAGCACCCCATCAATACAAT 60.024 45.455 0.00 0.00 0.00 2.71
2952 3252 1.357420 ACCAGCACCCCATCAATACAA 59.643 47.619 0.00 0.00 0.00 2.41
2953 3253 0.998928 ACCAGCACCCCATCAATACA 59.001 50.000 0.00 0.00 0.00 2.29
2954 3254 1.392589 CACCAGCACCCCATCAATAC 58.607 55.000 0.00 0.00 0.00 1.89
2955 3255 0.395586 GCACCAGCACCCCATCAATA 60.396 55.000 0.00 0.00 41.58 1.90
2956 3256 1.683365 GCACCAGCACCCCATCAAT 60.683 57.895 0.00 0.00 41.58 2.57
2957 3257 2.283101 GCACCAGCACCCCATCAA 60.283 61.111 0.00 0.00 41.58 2.57
2967 3267 7.010183 CCTTGTATTATATATACGTGCACCAGC 59.990 40.741 12.15 0.00 42.57 4.85
2968 3268 7.491372 CCCTTGTATTATATATACGTGCACCAG 59.509 40.741 12.15 0.00 0.00 4.00
2969 3269 7.178805 TCCCTTGTATTATATATACGTGCACCA 59.821 37.037 12.15 0.00 0.00 4.17
2970 3270 7.549839 TCCCTTGTATTATATATACGTGCACC 58.450 38.462 12.15 0.00 0.00 5.01
2971 3271 8.991243 TTCCCTTGTATTATATATACGTGCAC 57.009 34.615 6.82 6.82 0.00 4.57
2972 3272 8.255206 CCTTCCCTTGTATTATATATACGTGCA 58.745 37.037 0.00 0.00 0.00 4.57
2973 3273 7.224167 GCCTTCCCTTGTATTATATATACGTGC 59.776 40.741 0.00 0.00 0.00 5.34
2974 3274 7.709613 GGCCTTCCCTTGTATTATATATACGTG 59.290 40.741 0.00 0.00 0.00 4.49
2975 3275 7.622479 AGGCCTTCCCTTGTATTATATATACGT 59.378 37.037 0.00 0.00 43.06 3.57
2976 3276 8.019656 AGGCCTTCCCTTGTATTATATATACG 57.980 38.462 0.00 0.00 43.06 3.06
2977 3277 9.214962 AGAGGCCTTCCCTTGTATTATATATAC 57.785 37.037 6.77 0.00 46.60 1.47
2979 3279 9.214962 GTAGAGGCCTTCCCTTGTATTATATAT 57.785 37.037 6.77 0.00 46.60 0.86
2980 3280 7.622479 GGTAGAGGCCTTCCCTTGTATTATATA 59.378 40.741 6.77 0.00 46.60 0.86
2981 3281 6.444171 GGTAGAGGCCTTCCCTTGTATTATAT 59.556 42.308 6.77 0.00 46.60 0.86
2982 3282 5.783875 GGTAGAGGCCTTCCCTTGTATTATA 59.216 44.000 6.77 0.00 46.60 0.98
2983 3283 4.597940 GGTAGAGGCCTTCCCTTGTATTAT 59.402 45.833 6.77 0.00 46.60 1.28
2984 3284 3.971971 GGTAGAGGCCTTCCCTTGTATTA 59.028 47.826 6.77 0.00 46.60 0.98
2985 3285 2.778270 GGTAGAGGCCTTCCCTTGTATT 59.222 50.000 6.77 0.00 46.60 1.89
2986 3286 2.021936 AGGTAGAGGCCTTCCCTTGTAT 60.022 50.000 6.77 0.00 46.60 2.29
2987 3287 1.365028 AGGTAGAGGCCTTCCCTTGTA 59.635 52.381 6.77 0.00 46.60 2.41
2988 3288 0.119358 AGGTAGAGGCCTTCCCTTGT 59.881 55.000 6.77 0.00 46.60 3.16
2989 3289 0.833949 GAGGTAGAGGCCTTCCCTTG 59.166 60.000 6.77 0.00 46.60 3.61
2990 3290 0.417841 TGAGGTAGAGGCCTTCCCTT 59.582 55.000 6.77 0.00 46.60 3.95
2992 3292 1.512735 ATTGAGGTAGAGGCCTTCCC 58.487 55.000 6.77 7.52 39.34 3.97
2993 3293 4.984146 ATAATTGAGGTAGAGGCCTTCC 57.016 45.455 6.77 10.69 39.34 3.46
2994 3294 6.420913 TGTATAATTGAGGTAGAGGCCTTC 57.579 41.667 6.77 0.00 39.34 3.46
2995 3295 6.615726 TCTTGTATAATTGAGGTAGAGGCCTT 59.384 38.462 6.77 0.00 39.34 4.35
2996 3296 6.042208 GTCTTGTATAATTGAGGTAGAGGCCT 59.958 42.308 3.86 3.86 42.53 5.19
2997 3297 6.042208 AGTCTTGTATAATTGAGGTAGAGGCC 59.958 42.308 0.00 0.00 0.00 5.19
2998 3298 7.056844 AGTCTTGTATAATTGAGGTAGAGGC 57.943 40.000 0.00 0.00 0.00 4.70
2999 3299 8.798402 CCTAGTCTTGTATAATTGAGGTAGAGG 58.202 40.741 0.00 0.00 0.00 3.69
3000 3300 9.575868 TCCTAGTCTTGTATAATTGAGGTAGAG 57.424 37.037 0.00 0.00 0.00 2.43
3001 3301 9.575868 CTCCTAGTCTTGTATAATTGAGGTAGA 57.424 37.037 0.00 0.00 0.00 2.59
3002 3302 8.798402 CCTCCTAGTCTTGTATAATTGAGGTAG 58.202 40.741 0.00 0.00 32.82 3.18
3003 3303 8.287350 ACCTCCTAGTCTTGTATAATTGAGGTA 58.713 37.037 0.00 0.00 45.12 3.08
3004 3304 7.133483 ACCTCCTAGTCTTGTATAATTGAGGT 58.867 38.462 0.00 0.00 42.91 3.85
3005 3305 7.437748 CACCTCCTAGTCTTGTATAATTGAGG 58.562 42.308 0.00 0.00 41.08 3.86
3006 3306 7.437748 CCACCTCCTAGTCTTGTATAATTGAG 58.562 42.308 0.00 0.00 0.00 3.02
3007 3307 6.326583 CCCACCTCCTAGTCTTGTATAATTGA 59.673 42.308 0.00 0.00 0.00 2.57
3008 3308 6.099845 ACCCACCTCCTAGTCTTGTATAATTG 59.900 42.308 0.00 0.00 0.00 2.32
3009 3309 6.210522 ACCCACCTCCTAGTCTTGTATAATT 58.789 40.000 0.00 0.00 0.00 1.40
3010 3310 5.789535 ACCCACCTCCTAGTCTTGTATAAT 58.210 41.667 0.00 0.00 0.00 1.28
3011 3311 5.206587 GACCCACCTCCTAGTCTTGTATAA 58.793 45.833 0.00 0.00 0.00 0.98
3012 3312 4.231195 TGACCCACCTCCTAGTCTTGTATA 59.769 45.833 0.00 0.00 0.00 1.47
3013 3313 3.012502 TGACCCACCTCCTAGTCTTGTAT 59.987 47.826 0.00 0.00 0.00 2.29
3014 3314 2.380932 TGACCCACCTCCTAGTCTTGTA 59.619 50.000 0.00 0.00 0.00 2.41
3015 3315 1.149288 TGACCCACCTCCTAGTCTTGT 59.851 52.381 0.00 0.00 0.00 3.16
3016 3316 1.550976 GTGACCCACCTCCTAGTCTTG 59.449 57.143 0.00 0.00 0.00 3.02
3017 3317 1.149288 TGTGACCCACCTCCTAGTCTT 59.851 52.381 0.00 0.00 32.73 3.01
3018 3318 0.784495 TGTGACCCACCTCCTAGTCT 59.216 55.000 0.00 0.00 32.73 3.24
3019 3319 1.275573 GTTGTGACCCACCTCCTAGTC 59.724 57.143 0.00 0.00 32.73 2.59
3020 3320 1.132817 AGTTGTGACCCACCTCCTAGT 60.133 52.381 0.00 0.00 32.73 2.57
3021 3321 1.550976 GAGTTGTGACCCACCTCCTAG 59.449 57.143 0.00 0.00 32.73 3.02
3022 3322 1.640917 GAGTTGTGACCCACCTCCTA 58.359 55.000 0.00 0.00 32.73 2.94
3023 3323 1.128188 GGAGTTGTGACCCACCTCCT 61.128 60.000 12.25 0.00 38.71 3.69
3024 3324 1.375326 GGAGTTGTGACCCACCTCC 59.625 63.158 6.63 6.63 36.33 4.30
3025 3325 0.472471 TTGGAGTTGTGACCCACCTC 59.528 55.000 0.00 0.00 32.73 3.85
3026 3326 1.149101 ATTGGAGTTGTGACCCACCT 58.851 50.000 0.00 0.00 32.73 4.00
3027 3327 2.224670 TGTATTGGAGTTGTGACCCACC 60.225 50.000 0.00 0.00 32.73 4.61
3028 3328 2.812011 GTGTATTGGAGTTGTGACCCAC 59.188 50.000 0.00 0.00 34.56 4.61
3029 3329 2.549134 CGTGTATTGGAGTTGTGACCCA 60.549 50.000 0.00 0.00 0.00 4.51
3030 3330 2.073816 CGTGTATTGGAGTTGTGACCC 58.926 52.381 0.00 0.00 0.00 4.46
3031 3331 2.478894 CACGTGTATTGGAGTTGTGACC 59.521 50.000 7.58 0.00 0.00 4.02
3032 3332 2.096417 GCACGTGTATTGGAGTTGTGAC 60.096 50.000 18.38 0.00 0.00 3.67
3033 3333 2.139917 GCACGTGTATTGGAGTTGTGA 58.860 47.619 18.38 0.00 0.00 3.58
3034 3334 1.870402 TGCACGTGTATTGGAGTTGTG 59.130 47.619 18.38 0.00 0.00 3.33
3035 3335 2.248280 TGCACGTGTATTGGAGTTGT 57.752 45.000 18.38 0.00 0.00 3.32
3036 3336 3.829886 ATTGCACGTGTATTGGAGTTG 57.170 42.857 18.38 0.00 0.00 3.16
3037 3337 4.320023 TGTATTGCACGTGTATTGGAGTT 58.680 39.130 18.38 0.00 0.00 3.01
3038 3338 3.932822 TGTATTGCACGTGTATTGGAGT 58.067 40.909 18.38 0.00 0.00 3.85
3039 3339 4.937696 TTGTATTGCACGTGTATTGGAG 57.062 40.909 18.38 0.00 0.00 3.86
3040 3340 5.008712 TGTTTTGTATTGCACGTGTATTGGA 59.991 36.000 18.38 0.00 0.00 3.53
3041 3341 5.116377 GTGTTTTGTATTGCACGTGTATTGG 59.884 40.000 18.38 0.00 0.00 3.16
3042 3342 5.683302 TGTGTTTTGTATTGCACGTGTATTG 59.317 36.000 18.38 0.00 34.86 1.90
3043 3343 5.822278 TGTGTTTTGTATTGCACGTGTATT 58.178 33.333 18.38 11.76 34.86 1.89
3044 3344 5.425577 TGTGTTTTGTATTGCACGTGTAT 57.574 34.783 18.38 13.28 34.86 2.29
3045 3345 4.877323 TGTGTTTTGTATTGCACGTGTA 57.123 36.364 18.38 10.46 34.86 2.90
3046 3346 3.766676 TGTGTTTTGTATTGCACGTGT 57.233 38.095 18.38 0.00 34.86 4.49
3047 3347 5.448438 AGTATGTGTTTTGTATTGCACGTG 58.552 37.500 12.28 12.28 34.86 4.49
3048 3348 5.237561 TGAGTATGTGTTTTGTATTGCACGT 59.762 36.000 0.00 0.00 34.86 4.49
3049 3349 5.684850 TGAGTATGTGTTTTGTATTGCACG 58.315 37.500 0.00 0.00 34.86 5.34
3050 3350 6.915300 TGTTGAGTATGTGTTTTGTATTGCAC 59.085 34.615 0.00 0.00 0.00 4.57
3051 3351 6.915300 GTGTTGAGTATGTGTTTTGTATTGCA 59.085 34.615 0.00 0.00 0.00 4.08
3052 3352 6.362283 GGTGTTGAGTATGTGTTTTGTATTGC 59.638 38.462 0.00 0.00 0.00 3.56
3053 3353 6.861055 GGGTGTTGAGTATGTGTTTTGTATTG 59.139 38.462 0.00 0.00 0.00 1.90
3054 3354 6.015772 GGGGTGTTGAGTATGTGTTTTGTATT 60.016 38.462 0.00 0.00 0.00 1.89
3055 3355 5.475564 GGGGTGTTGAGTATGTGTTTTGTAT 59.524 40.000 0.00 0.00 0.00 2.29
3056 3356 4.822896 GGGGTGTTGAGTATGTGTTTTGTA 59.177 41.667 0.00 0.00 0.00 2.41
3057 3357 3.634910 GGGGTGTTGAGTATGTGTTTTGT 59.365 43.478 0.00 0.00 0.00 2.83
3058 3358 3.005367 GGGGGTGTTGAGTATGTGTTTTG 59.995 47.826 0.00 0.00 0.00 2.44
3059 3359 3.227614 GGGGGTGTTGAGTATGTGTTTT 58.772 45.455 0.00 0.00 0.00 2.43
3060 3360 2.871453 GGGGGTGTTGAGTATGTGTTT 58.129 47.619 0.00 0.00 0.00 2.83
3061 3361 2.579410 GGGGGTGTTGAGTATGTGTT 57.421 50.000 0.00 0.00 0.00 3.32
3094 3394 2.179517 CTCTGTGTCTCCGGCGAC 59.820 66.667 17.77 17.77 34.52 5.19
3095 3395 2.033602 TCTCTGTGTCTCCGGCGA 59.966 61.111 9.30 0.00 0.00 5.54
3096 3396 2.179517 GTCTCTGTGTCTCCGGCG 59.820 66.667 0.00 0.00 0.00 6.46
3097 3397 1.214062 CAGTCTCTGTGTCTCCGGC 59.786 63.158 0.00 0.00 0.00 6.13
3098 3398 0.609406 TCCAGTCTCTGTGTCTCCGG 60.609 60.000 0.00 0.00 0.00 5.14
3099 3399 0.523966 GTCCAGTCTCTGTGTCTCCG 59.476 60.000 0.00 0.00 0.00 4.63
3100 3400 0.892063 GGTCCAGTCTCTGTGTCTCC 59.108 60.000 0.00 0.00 0.00 3.71
3101 3401 0.523966 CGGTCCAGTCTCTGTGTCTC 59.476 60.000 0.00 0.00 0.00 3.36
3102 3402 0.110678 TCGGTCCAGTCTCTGTGTCT 59.889 55.000 0.00 0.00 0.00 3.41
3103 3403 0.959553 TTCGGTCCAGTCTCTGTGTC 59.040 55.000 0.00 0.00 0.00 3.67
3104 3404 1.068741 GTTTCGGTCCAGTCTCTGTGT 59.931 52.381 0.00 0.00 0.00 3.72
3105 3405 1.784525 GTTTCGGTCCAGTCTCTGTG 58.215 55.000 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.