Multiple sequence alignment - TraesCS6B01G339000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G339000 chr6B 100.000 2624 0 0 4832 7455 597293710 597296333 0.000000e+00 4846.0
1 TraesCS6B01G339000 chr6B 100.000 2352 0 0 1 2352 597288879 597291230 0.000000e+00 4344.0
2 TraesCS6B01G339000 chr6B 100.000 1963 0 0 2542 4504 597291420 597293382 0.000000e+00 3626.0
3 TraesCS6B01G339000 chr6B 93.151 73 5 0 4073 4145 539535925 539535997 2.840000e-19 108.0
4 TraesCS6B01G339000 chr6B 96.078 51 2 0 7182 7232 687084721 687084671 4.790000e-12 84.2
5 TraesCS6B01G339000 chr6B 92.982 57 2 2 7179 7233 282993001 282992945 1.720000e-11 82.4
6 TraesCS6B01G339000 chr6A 92.599 2270 117 24 4832 7064 545125682 545127937 0.000000e+00 3214.0
7 TraesCS6B01G339000 chr6A 94.608 1762 67 14 2745 4504 545123724 545125459 0.000000e+00 2702.0
8 TraesCS6B01G339000 chr6A 86.845 2060 117 72 381 2352 545121354 545123347 0.000000e+00 2161.0
9 TraesCS6B01G339000 chr6A 82.979 423 33 16 1 386 545120985 545121405 5.540000e-91 346.0
10 TraesCS6B01G339000 chr6A 90.254 236 22 1 3312 3547 536983033 536983267 2.610000e-79 307.0
11 TraesCS6B01G339000 chr6A 88.739 222 14 3 7228 7449 545127934 545128144 2.060000e-65 261.0
12 TraesCS6B01G339000 chr6A 92.593 135 10 0 4370 4504 558610723 558610857 2.120000e-45 195.0
13 TraesCS6B01G339000 chr6A 92.708 96 6 1 7058 7153 604516184 604516278 3.630000e-28 137.0
14 TraesCS6B01G339000 chr6D 95.992 1547 56 6 2959 4504 399031546 399033087 0.000000e+00 2508.0
15 TraesCS6B01G339000 chr6D 85.099 2067 142 59 381 2352 399029300 399031295 0.000000e+00 1958.0
16 TraesCS6B01G339000 chr6D 95.652 1127 41 7 5943 7061 399034586 399035712 0.000000e+00 1803.0
17 TraesCS6B01G339000 chr6D 93.642 1038 34 10 4874 5884 399033524 399034556 0.000000e+00 1522.0
18 TraesCS6B01G339000 chr6D 87.117 489 55 8 3635 4121 466386539 466386057 1.410000e-151 547.0
19 TraesCS6B01G339000 chr6D 95.133 226 10 1 7230 7455 399035714 399035938 9.200000e-94 355.0
20 TraesCS6B01G339000 chr6D 87.847 288 12 6 1 282 399028935 399029205 4.340000e-82 316.0
21 TraesCS6B01G339000 chr6D 90.909 88 4 2 286 369 399029245 399029332 1.700000e-21 115.0
22 TraesCS6B01G339000 chr6D 100.000 30 0 0 5901 5930 111949075 111949104 1.000000e-03 56.5
23 TraesCS6B01G339000 chr5A 90.959 365 31 2 3312 3676 259088559 259088921 2.420000e-134 490.0
24 TraesCS6B01G339000 chr5A 93.103 58 2 2 7185 7240 51669551 51669494 4.790000e-12 84.2
25 TraesCS6B01G339000 chr3B 88.493 365 38 3 3312 3676 546149309 546148949 8.880000e-119 438.0
26 TraesCS6B01G339000 chr3B 87.931 232 20 3 2608 2831 655299953 655299722 4.430000e-67 267.0
27 TraesCS6B01G339000 chr3B 81.250 336 45 12 2957 3290 293694064 293693745 9.600000e-64 255.0
28 TraesCS6B01G339000 chr3B 86.667 225 22 7 2604 2824 564243018 564243238 7.470000e-60 243.0
29 TraesCS6B01G339000 chr3B 84.519 239 32 5 2603 2840 354001713 354001479 1.620000e-56 231.0
30 TraesCS6B01G339000 chr3B 90.210 143 12 2 4363 4504 500525143 500525002 1.280000e-42 185.0
31 TraesCS6B01G339000 chr3B 98.077 52 0 1 7179 7229 564339828 564339777 1.030000e-13 89.8
32 TraesCS6B01G339000 chr3B 80.159 126 13 7 7061 7186 6923269 6923382 4.790000e-12 84.2
33 TraesCS6B01G339000 chr2B 89.254 335 33 3 3339 3670 678365843 678366177 4.160000e-112 416.0
34 TraesCS6B01G339000 chr2B 82.493 337 44 9 2957 3292 678365513 678365835 1.580000e-71 281.0
35 TraesCS6B01G339000 chr2B 94.681 94 4 1 7061 7153 507408814 507408721 2.170000e-30 145.0
36 TraesCS6B01G339000 chr2B 93.684 95 5 1 7061 7154 394312151 394312057 2.800000e-29 141.0
37 TraesCS6B01G339000 chr2B 100.000 30 0 0 5899 5928 434164351 434164380 1.000000e-03 56.5
38 TraesCS6B01G339000 chr4B 85.792 366 43 5 3312 3676 342753490 342753133 5.460000e-101 379.0
39 TraesCS6B01G339000 chr4B 82.196 337 45 9 2957 3292 342753800 342753478 7.370000e-70 276.0
40 TraesCS6B01G339000 chr3A 89.202 213 22 1 2615 2827 741656541 741656752 1.590000e-66 265.0
41 TraesCS6B01G339000 chr3A 100.000 30 0 0 5899 5928 571179633 571179604 1.000000e-03 56.5
42 TraesCS6B01G339000 chr1D 88.000 225 20 7 2609 2831 434612347 434612128 7.420000e-65 259.0
43 TraesCS6B01G339000 chr1D 93.939 99 3 1 7058 7153 475807374 475807276 6.030000e-31 147.0
44 TraesCS6B01G339000 chr7B 84.716 229 34 1 2603 2831 414049831 414049604 2.090000e-55 228.0
45 TraesCS6B01G339000 chr7B 100.000 48 0 0 7185 7232 489708609 489708656 1.030000e-13 89.8
46 TraesCS6B01G339000 chr7B 97.959 49 1 0 7184 7232 449509326 449509278 1.330000e-12 86.1
47 TraesCS6B01G339000 chr5B 84.279 229 35 1 2603 2831 266013045 266012818 9.740000e-54 222.0
48 TraesCS6B01G339000 chr5B 93.684 95 4 1 7061 7153 559193085 559193179 2.800000e-29 141.0
49 TraesCS6B01G339000 chr5B 96.296 54 1 1 7180 7233 608626338 608626286 3.710000e-13 87.9
50 TraesCS6B01G339000 chrUn 84.753 223 30 4 2603 2824 239737498 239737717 3.500000e-53 220.0
51 TraesCS6B01G339000 chrUn 83.857 223 32 4 2603 2824 383689656 383689875 7.580000e-50 209.0
52 TraesCS6B01G339000 chrUn 91.852 135 11 0 4370 4504 297894714 297894580 9.870000e-44 189.0
53 TraesCS6B01G339000 chr5D 96.842 95 1 2 7060 7153 530638705 530638612 2.780000e-34 158.0
54 TraesCS6B01G339000 chr5D 94.949 99 3 2 7058 7155 530638593 530638690 3.600000e-33 154.0
55 TraesCS6B01G339000 chr2A 94.737 95 3 2 7060 7153 597465429 597465522 6.030000e-31 147.0
56 TraesCS6B01G339000 chr3D 86.567 134 13 2 4370 4503 255457641 255457513 7.800000e-30 143.0
57 TraesCS6B01G339000 chr3D 100.000 30 0 0 5899 5928 433137947 433137918 1.000000e-03 56.5
58 TraesCS6B01G339000 chr2D 93.617 94 5 1 7061 7153 498317833 498317926 1.010000e-28 139.0
59 TraesCS6B01G339000 chr2D 78.049 123 15 7 7063 7185 611926107 611925997 4.830000e-07 67.6
60 TraesCS6B01G339000 chr1B 83.333 132 17 2 4372 4503 295721662 295721536 4.730000e-22 117.0
61 TraesCS6B01G339000 chr1B 94.444 72 4 0 4073 4144 335547073 335547144 2.200000e-20 111.0
62 TraesCS6B01G339000 chr1B 96.154 52 2 0 7183 7234 679368024 679367973 1.330000e-12 86.1
63 TraesCS6B01G339000 chr1A 86.667 75 3 6 7160 7232 563577887 563577956 8.020000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G339000 chr6B 597288879 597296333 7454 False 4272.000000 4846 100.000000 1 7455 3 chr6B.!!$F2 7454
1 TraesCS6B01G339000 chr6A 545120985 545128144 7159 False 1736.800000 3214 89.154000 1 7449 5 chr6A.!!$F4 7448
2 TraesCS6B01G339000 chr6D 399028935 399035938 7003 False 1225.285714 2508 92.039143 1 7455 7 chr6D.!!$F2 7454
3 TraesCS6B01G339000 chr2B 678365513 678366177 664 False 348.500000 416 85.873500 2957 3670 2 chr2B.!!$F2 713
4 TraesCS6B01G339000 chr4B 342753133 342753800 667 True 327.500000 379 83.994000 2957 3676 2 chr4B.!!$R1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 894 0.682209 GCGTCCTGGGAGTGGTACTA 60.682 60.000 0.00 0.00 0.00 1.82 F
2001 2181 0.035439 ATGTCCACCCATCGTTGTCC 60.035 55.000 0.00 0.00 0.00 4.02 F
2042 2225 0.036306 CAGTTACTCGGCAGGGGTTT 59.964 55.000 0.00 0.00 0.00 3.27 F
2043 2226 0.323957 AGTTACTCGGCAGGGGTTTC 59.676 55.000 0.00 0.00 0.00 2.78 F
2151 2342 0.752743 ATGCAATGTGTATGGGCGCT 60.753 50.000 7.64 0.00 0.00 5.92 F
2348 2545 1.560146 CCCCTTCCTAACCTGAGTTCC 59.440 57.143 0.00 0.00 37.42 3.62 F
2999 3379 1.806542 TCTTTTTGCTAGCCTTGCGAG 59.193 47.619 13.29 3.09 34.50 5.03 F
3786 4170 1.936547 CTATTTCAGAGGCACCGAAGC 59.063 52.381 0.00 0.00 0.00 3.86 F
5048 5523 0.741326 ACTCACTCGATGCGTATGCT 59.259 50.000 8.69 0.00 43.34 3.79 F
6130 6614 0.036388 ACACATCCGTCGCTGGATTT 60.036 50.000 5.61 0.00 46.74 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2142 2333 0.035915 TTGTACTGCAAGCGCCCATA 60.036 50.000 2.29 0.00 37.60 2.74 R
3768 4152 0.036732 TGCTTCGGTGCCTCTGAAAT 59.963 50.000 2.70 0.00 40.41 2.17 R
3870 4254 1.939255 GCTATCAAAGGAGCAGCTGAC 59.061 52.381 20.43 10.42 38.62 3.51 R
3918 4302 4.224147 TCAGATCTTACCGATGGAAAACCA 59.776 41.667 0.00 0.00 30.84 3.67 R
4123 4507 1.263356 AAATGCAGCTGGAGCACATT 58.737 45.000 17.12 12.80 45.95 2.71 R
4312 4696 0.387239 GGTCAGTGCGGCAATGAAAC 60.387 55.000 31.35 23.27 40.09 2.78 R
4333 4717 2.357154 GGCACCACCAATTAGTCCAGAT 60.357 50.000 0.00 0.00 38.86 2.90 R
5522 6000 0.452184 AGAGACGTGCATCGGTACAG 59.548 55.000 12.18 0.00 44.69 2.74 R
6409 6894 0.035739 GGTTGAACGGCAGGGAGTAA 59.964 55.000 0.00 0.00 0.00 2.24 R
7060 7553 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 4.760047 CACCGCTAGCCAGCCGTT 62.760 66.667 9.66 0.00 45.64 4.44
56 58 2.750888 GCTAGCCTCGCCCAAAACG 61.751 63.158 2.29 0.00 0.00 3.60
97 99 2.359975 CACGGCTTTCACCCTCCC 60.360 66.667 0.00 0.00 0.00 4.30
106 108 1.541275 TTCACCCTCCCTTTTCCCTT 58.459 50.000 0.00 0.00 0.00 3.95
157 164 2.188994 GACTAGCAGGGCAGGCAG 59.811 66.667 0.00 1.17 0.00 4.85
261 288 1.199097 CGAGGAAACGGAACCCAAATG 59.801 52.381 0.00 0.00 0.00 2.32
263 290 1.960689 AGGAAACGGAACCCAAATGTG 59.039 47.619 0.00 0.00 0.00 3.21
264 291 1.957877 GGAAACGGAACCCAAATGTGA 59.042 47.619 0.00 0.00 0.00 3.58
265 292 2.560981 GGAAACGGAACCCAAATGTGAT 59.439 45.455 0.00 0.00 0.00 3.06
266 293 3.759618 GGAAACGGAACCCAAATGTGATA 59.240 43.478 0.00 0.00 0.00 2.15
269 296 4.981806 ACGGAACCCAAATGTGATAATG 57.018 40.909 0.00 0.00 0.00 1.90
271 298 4.398044 ACGGAACCCAAATGTGATAATGTC 59.602 41.667 0.00 0.00 0.00 3.06
273 300 4.709397 GGAACCCAAATGTGATAATGTCCA 59.291 41.667 0.00 0.00 0.00 4.02
274 301 5.186797 GGAACCCAAATGTGATAATGTCCAA 59.813 40.000 0.00 0.00 0.00 3.53
275 302 6.295575 GGAACCCAAATGTGATAATGTCCAAA 60.296 38.462 0.00 0.00 0.00 3.28
276 303 6.872585 ACCCAAATGTGATAATGTCCAAAT 57.127 33.333 0.00 0.00 0.00 2.32
277 304 6.877236 ACCCAAATGTGATAATGTCCAAATC 58.123 36.000 0.00 0.00 0.00 2.17
278 305 6.669154 ACCCAAATGTGATAATGTCCAAATCT 59.331 34.615 0.00 0.00 0.00 2.40
279 306 7.838696 ACCCAAATGTGATAATGTCCAAATCTA 59.161 33.333 0.00 0.00 0.00 1.98
280 307 8.863086 CCCAAATGTGATAATGTCCAAATCTAT 58.137 33.333 0.00 0.00 0.00 1.98
281 308 9.903682 CCAAATGTGATAATGTCCAAATCTATC 57.096 33.333 0.00 0.00 0.00 2.08
284 311 7.734924 TGTGATAATGTCCAAATCTATCTGC 57.265 36.000 0.00 0.00 0.00 4.26
285 312 6.712095 TGTGATAATGTCCAAATCTATCTGCC 59.288 38.462 0.00 0.00 0.00 4.85
286 313 6.939163 GTGATAATGTCCAAATCTATCTGCCT 59.061 38.462 0.00 0.00 0.00 4.75
318 368 1.611673 CCCGATTTCACTGCCAACTCT 60.612 52.381 0.00 0.00 0.00 3.24
346 400 0.884704 AAACCACGCAGAAGCATCGT 60.885 50.000 0.00 0.00 42.27 3.73
385 439 4.145365 CCGAGTAGGAAGAGAGAGAAGA 57.855 50.000 0.00 0.00 45.00 2.87
386 440 4.714632 CCGAGTAGGAAGAGAGAGAAGAT 58.285 47.826 0.00 0.00 45.00 2.40
387 441 4.755123 CCGAGTAGGAAGAGAGAGAAGATC 59.245 50.000 0.00 0.00 45.00 2.75
388 442 4.447724 CGAGTAGGAAGAGAGAGAAGATCG 59.552 50.000 0.00 0.00 0.00 3.69
389 443 5.365619 GAGTAGGAAGAGAGAGAAGATCGT 58.634 45.833 0.00 0.00 0.00 3.73
390 444 5.365619 AGTAGGAAGAGAGAGAAGATCGTC 58.634 45.833 0.00 0.00 0.00 4.20
391 445 3.551846 AGGAAGAGAGAGAAGATCGTCC 58.448 50.000 4.93 0.00 40.58 4.79
392 446 2.621526 GGAAGAGAGAGAAGATCGTCCC 59.378 54.545 4.93 0.00 36.11 4.46
393 447 2.358322 AGAGAGAGAAGATCGTCCCC 57.642 55.000 4.93 0.00 0.00 4.81
394 448 0.948678 GAGAGAGAAGATCGTCCCCG 59.051 60.000 4.93 0.00 0.00 5.73
395 449 1.104577 AGAGAGAAGATCGTCCCCGC 61.105 60.000 4.93 0.31 0.00 6.13
396 450 1.076632 AGAGAAGATCGTCCCCGCT 60.077 57.895 4.93 0.00 0.00 5.52
397 451 1.104577 AGAGAAGATCGTCCCCGCTC 61.105 60.000 4.93 0.00 0.00 5.03
398 452 2.077821 GAGAAGATCGTCCCCGCTCC 62.078 65.000 4.93 0.00 29.66 4.70
399 453 3.486252 GAAGATCGTCCCCGCTCCG 62.486 68.421 0.00 0.00 29.66 4.63
400 454 4.816984 AGATCGTCCCCGCTCCGT 62.817 66.667 0.00 0.00 29.66 4.69
401 455 4.570663 GATCGTCCCCGCTCCGTG 62.571 72.222 0.00 0.00 0.00 4.94
436 490 4.788617 AGGAAGAGAGAGAAGAGGAGTACT 59.211 45.833 0.00 0.00 0.00 2.73
437 491 5.968167 AGGAAGAGAGAGAAGAGGAGTACTA 59.032 44.000 0.00 0.00 0.00 1.82
438 492 6.053650 GGAAGAGAGAGAAGAGGAGTACTAC 58.946 48.000 0.00 0.00 0.00 2.73
439 493 6.126854 GGAAGAGAGAGAAGAGGAGTACTACT 60.127 46.154 7.55 7.55 0.00 2.57
440 494 7.070322 GGAAGAGAGAGAAGAGGAGTACTACTA 59.930 44.444 7.87 0.00 0.00 1.82
441 495 7.357429 AGAGAGAGAAGAGGAGTACTACTAC 57.643 44.000 7.87 3.01 0.00 2.73
442 496 7.130775 AGAGAGAGAAGAGGAGTACTACTACT 58.869 42.308 7.87 8.07 43.53 2.57
462 516 3.324713 AGTGGGATACTGGCAGGC 58.675 61.111 20.34 7.58 38.49 4.85
615 683 2.438075 CCCAAGGCAGAGCAGAGC 60.438 66.667 0.00 0.00 0.00 4.09
757 838 3.706373 CCTCCGACCCACCACCAG 61.706 72.222 0.00 0.00 0.00 4.00
787 868 2.180769 CACCACACGCTAGCGCTA 59.819 61.111 35.63 17.75 44.19 4.26
788 869 1.874019 CACCACACGCTAGCGCTAG 60.874 63.158 34.98 34.98 44.19 3.42
813 894 0.682209 GCGTCCTGGGAGTGGTACTA 60.682 60.000 0.00 0.00 0.00 1.82
814 895 1.390565 CGTCCTGGGAGTGGTACTAG 58.609 60.000 0.00 0.00 0.00 2.57
954 1058 4.507916 TCGGGAGGAGGAGGAGCG 62.508 72.222 0.00 0.00 0.00 5.03
982 1087 1.657751 CGTGTGATCTGAGGCGGAGA 61.658 60.000 0.00 0.00 0.00 3.71
1113 1218 0.826715 TCTCCTACTGCATCACCAGC 59.173 55.000 0.00 0.00 36.29 4.85
1119 1224 4.365111 TGCATCACCAGCCCACCC 62.365 66.667 0.00 0.00 0.00 4.61
1138 1243 1.449601 CCGTGGCGTAAATGCTCCT 60.450 57.895 0.00 0.00 34.52 3.69
1139 1244 1.024579 CCGTGGCGTAAATGCTCCTT 61.025 55.000 0.00 0.00 34.52 3.36
1178 1283 4.778143 ACATGCTCCCCCGTTCGC 62.778 66.667 0.00 0.00 0.00 4.70
1215 1324 2.411290 CGCCAGCGGTTTTTGTGT 59.589 55.556 3.61 0.00 35.56 3.72
1216 1325 1.226831 CGCCAGCGGTTTTTGTGTT 60.227 52.632 3.61 0.00 35.56 3.32
1217 1326 0.804156 CGCCAGCGGTTTTTGTGTTT 60.804 50.000 3.61 0.00 35.56 2.83
1218 1327 1.364721 GCCAGCGGTTTTTGTGTTTT 58.635 45.000 0.00 0.00 0.00 2.43
1220 1329 2.475353 GCCAGCGGTTTTTGTGTTTTTG 60.475 45.455 0.00 0.00 0.00 2.44
1221 1330 2.095053 CCAGCGGTTTTTGTGTTTTTGG 59.905 45.455 0.00 0.00 0.00 3.28
1223 1332 1.202087 GCGGTTTTTGTGTTTTTGGGC 60.202 47.619 0.00 0.00 0.00 5.36
1227 1356 0.036388 TTTTGTGTTTTTGGGCGGCA 60.036 45.000 12.47 0.00 0.00 5.69
1229 1358 1.323271 TTGTGTTTTTGGGCGGCAGA 61.323 50.000 12.47 0.00 0.00 4.26
1236 1365 0.467290 TTTGGGCGGCAGAGTTTTCT 60.467 50.000 12.47 0.00 0.00 2.52
1280 1422 0.929824 CACGAACTTTGCCGTTGCTG 60.930 55.000 0.00 0.00 36.83 4.41
1326 1474 3.948719 GGCCTCGGTGGTTGGTGA 61.949 66.667 0.00 0.00 38.35 4.02
1337 1485 0.623723 GGTTGGTGAATGGGCTCCTA 59.376 55.000 0.00 0.00 0.00 2.94
1362 1510 4.749310 CGCCTCGCTCCAGCTTGT 62.749 66.667 0.00 0.00 39.32 3.16
1430 1583 5.219633 CCGGCGGATATTCCAAAATAAAAG 58.780 41.667 24.41 0.00 35.91 2.27
1485 1638 8.132362 TGGTAGTTTATTAATGCGCTTTAATGG 58.868 33.333 34.13 0.00 34.47 3.16
1491 1644 0.684153 ATGCGCTTTAATGGGGTGCT 60.684 50.000 9.73 0.00 37.37 4.40
1492 1645 1.139520 GCGCTTTAATGGGGTGCTG 59.860 57.895 0.00 0.00 34.21 4.41
1515 1671 7.062749 TGCGTTGAATATCCTCCTAGTTTAT 57.937 36.000 0.00 0.00 0.00 1.40
1516 1672 7.152645 TGCGTTGAATATCCTCCTAGTTTATC 58.847 38.462 0.00 0.00 0.00 1.75
1518 1674 8.521176 GCGTTGAATATCCTCCTAGTTTATCTA 58.479 37.037 0.00 0.00 0.00 1.98
1551 1720 0.681564 TGCAAAGGTTTGACCCGTGT 60.682 50.000 6.63 0.00 39.75 4.49
1574 1746 4.565022 TGATGCTACTCGACATTCAACAA 58.435 39.130 0.00 0.00 0.00 2.83
1597 1769 5.471556 ACAAGGAATTTGCATGATTGTCA 57.528 34.783 0.00 0.00 40.59 3.58
1605 1777 1.565288 TGCATGATTGTCAGATGGGGA 59.435 47.619 0.00 0.00 0.00 4.81
1606 1778 2.176148 TGCATGATTGTCAGATGGGGAT 59.824 45.455 0.00 0.00 0.00 3.85
1609 1781 4.100498 GCATGATTGTCAGATGGGGATTTT 59.900 41.667 0.00 0.00 0.00 1.82
1653 1830 1.884579 ACTGCCTTTGATGCTCAAGTG 59.115 47.619 0.00 0.00 37.70 3.16
1656 1833 0.169672 CCTTTGATGCTCAAGTGGCG 59.830 55.000 0.00 0.00 37.70 5.69
1709 1888 3.654414 CTTTCGCCTTGACTTAGTCAGT 58.346 45.455 14.99 0.00 43.69 3.41
1722 1902 6.206048 TGACTTAGTCAGTGTCAACTCGATTA 59.794 38.462 11.42 0.00 37.67 1.75
1736 1916 6.693113 TCAACTCGATTATGACTTCGATTCTG 59.307 38.462 0.00 0.00 42.84 3.02
1748 1928 3.217599 TCGATTCTGACGAGTTTCCAG 57.782 47.619 0.00 0.00 34.85 3.86
1782 1962 6.471198 GTGCTATTTTTACGATTTTGTAGGGC 59.529 38.462 0.00 0.00 0.00 5.19
1787 1967 6.484818 TTTTACGATTTTGTAGGGCAGTAC 57.515 37.500 0.00 0.00 0.00 2.73
1792 1972 6.232692 ACGATTTTGTAGGGCAGTACTTAAA 58.767 36.000 0.00 0.00 0.00 1.52
1794 1974 6.148150 CGATTTTGTAGGGCAGTACTTAAACA 59.852 38.462 0.00 0.00 0.00 2.83
1830 2010 1.155087 CACGCGTTGACTCGTTTCG 60.155 57.895 10.22 0.00 34.87 3.46
1861 2041 2.051703 CACCGGGCGTTCGTTTTG 60.052 61.111 6.32 0.00 0.00 2.44
1872 2052 5.495502 GGCGTTCGTTTTGGTTACTATATG 58.504 41.667 0.00 0.00 0.00 1.78
1919 2099 4.539083 TGGCGTGTTCCGTGCTGT 62.539 61.111 0.00 0.00 39.32 4.40
2001 2181 0.035439 ATGTCCACCCATCGTTGTCC 60.035 55.000 0.00 0.00 0.00 4.02
2031 2214 4.034975 GCTGCATTGATTCTCCAGTTACTC 59.965 45.833 0.00 0.00 0.00 2.59
2040 2223 2.291043 CCAGTTACTCGGCAGGGGT 61.291 63.158 0.00 0.00 0.00 4.95
2041 2224 1.677552 CAGTTACTCGGCAGGGGTT 59.322 57.895 0.00 0.00 0.00 4.11
2042 2225 0.036306 CAGTTACTCGGCAGGGGTTT 59.964 55.000 0.00 0.00 0.00 3.27
2043 2226 0.323957 AGTTACTCGGCAGGGGTTTC 59.676 55.000 0.00 0.00 0.00 2.78
2044 2227 0.323957 GTTACTCGGCAGGGGTTTCT 59.676 55.000 0.00 0.00 0.00 2.52
2085 2276 6.919662 CCTTGTGTGTTATTATCATGCATTCC 59.080 38.462 0.00 0.00 0.00 3.01
2100 2291 6.660521 TCATGCATTCCTTGTCTGTTTTAGAT 59.339 34.615 0.00 0.00 37.83 1.98
2102 2293 7.377766 TGCATTCCTTGTCTGTTTTAGATAC 57.622 36.000 0.00 0.00 37.83 2.24
2103 2294 7.168219 TGCATTCCTTGTCTGTTTTAGATACT 58.832 34.615 0.00 0.00 37.83 2.12
2107 2298 7.435068 TCCTTGTCTGTTTTAGATACTTTGC 57.565 36.000 0.00 0.00 37.83 3.68
2142 2333 6.458070 GCTTTGTTTTGGTTAATGCAATGTGT 60.458 34.615 0.00 0.00 0.00 3.72
2151 2342 0.752743 ATGCAATGTGTATGGGCGCT 60.753 50.000 7.64 0.00 0.00 5.92
2215 2406 4.152607 AGAAGAGCGAATTCTTGTTTGC 57.847 40.909 3.52 0.00 37.53 3.68
2331 2528 1.746220 TGCGCATTTAATGTGTACCCC 59.254 47.619 18.05 3.78 42.56 4.95
2348 2545 1.560146 CCCCTTCCTAACCTGAGTTCC 59.440 57.143 0.00 0.00 37.42 3.62
2649 2876 3.953612 TCAAGCATCACAAACTTTGACCT 59.046 39.130 8.55 0.00 0.00 3.85
2650 2877 3.996150 AGCATCACAAACTTTGACCTG 57.004 42.857 8.55 3.73 0.00 4.00
2661 2888 3.490348 ACTTTGACCTGATTTGTGGAGG 58.510 45.455 0.00 0.00 0.00 4.30
2663 2890 3.423539 TTGACCTGATTTGTGGAGGAG 57.576 47.619 0.00 0.00 0.00 3.69
2671 2898 5.945784 CCTGATTTGTGGAGGAGAACATTTA 59.054 40.000 0.00 0.00 0.00 1.40
2684 2911 6.995091 AGGAGAACATTTACATCTAGAATGCC 59.005 38.462 0.00 0.00 34.86 4.40
2823 3175 5.345702 TCTACACGCACTACATTATGGAAC 58.654 41.667 0.00 0.00 0.00 3.62
2835 3187 5.984725 ACATTATGGAACGGAGTGATGTTA 58.015 37.500 0.00 0.00 45.00 2.41
2845 3197 3.545703 GGAGTGATGTTAACATGGGAGG 58.454 50.000 25.42 0.00 36.57 4.30
2868 3220 4.074970 AGTTGTAAGGTTGAATGCTCTGG 58.925 43.478 0.00 0.00 0.00 3.86
2887 3239 5.188434 TCTGGATGGAGAAATGATGAACAC 58.812 41.667 0.00 0.00 0.00 3.32
2888 3240 4.920999 TGGATGGAGAAATGATGAACACA 58.079 39.130 0.00 0.00 0.00 3.72
2942 3294 5.559770 TGATGTGGTCATATCGGCAATTAT 58.440 37.500 3.85 0.00 34.06 1.28
2943 3295 6.706295 TGATGTGGTCATATCGGCAATTATA 58.294 36.000 3.85 0.00 34.06 0.98
2944 3296 7.337938 TGATGTGGTCATATCGGCAATTATAT 58.662 34.615 3.85 0.00 34.06 0.86
2948 3300 9.508642 TGTGGTCATATCGGCAATTATATTTTA 57.491 29.630 0.00 0.00 0.00 1.52
2999 3379 1.806542 TCTTTTTGCTAGCCTTGCGAG 59.193 47.619 13.29 3.09 34.50 5.03
3475 3857 5.308497 TGGATCTTACACCTTTGTTCTACCA 59.692 40.000 0.00 0.00 37.15 3.25
3537 3921 4.530553 ACCTGATCCACACACTGTATGTTA 59.469 41.667 0.00 0.00 40.64 2.41
3762 4146 6.090763 TGCGTAATTGTTATGTCTCAACTCAG 59.909 38.462 0.00 0.00 0.00 3.35
3768 4152 6.096673 TGTTATGTCTCAACTCAGTTGCTA 57.903 37.500 13.15 0.00 42.55 3.49
3786 4170 1.936547 CTATTTCAGAGGCACCGAAGC 59.063 52.381 0.00 0.00 0.00 3.86
3813 4197 3.887621 TGTTCTAGCAGGAATAGCGTT 57.112 42.857 0.00 0.00 37.01 4.84
3824 4208 6.016610 AGCAGGAATAGCGTTTTTAACTTTCA 60.017 34.615 0.00 0.00 37.01 2.69
3870 4254 5.970592 TGTTTCAGATATCTCAGTCCACTG 58.029 41.667 1.03 0.00 45.08 3.66
3918 4302 2.040278 TGGCTTTGGACTGTATGAGCTT 59.960 45.455 0.00 0.00 0.00 3.74
3945 4329 2.625314 TCCATCGGTAAGATCTGAGCAG 59.375 50.000 9.95 2.95 37.52 4.24
4081 4465 2.350293 CGCAATGGTTCGACACAATTCA 60.350 45.455 0.00 0.00 24.35 2.57
4123 4507 4.475345 ACCTTTTGTTACCCAGCATAACA 58.525 39.130 0.00 0.00 40.04 2.41
4303 4687 4.051922 GAGCTTACAGGAATGTATCACCG 58.948 47.826 0.00 0.00 0.00 4.94
4312 4696 3.458189 GAATGTATCACCGAAGACCCAG 58.542 50.000 0.00 0.00 0.00 4.45
4333 4717 2.723586 TTCATTGCCGCACTGACCGA 62.724 55.000 12.58 0.00 0.00 4.69
4405 4789 1.483827 TGCTTGTTCCATTTGCACCAA 59.516 42.857 0.00 0.00 0.00 3.67
4424 4809 5.009610 CACCAACCTTGCTGTTTAGTAACAT 59.990 40.000 0.00 0.00 43.02 2.71
4867 5252 7.137490 TGCACTCACTTGATCTTCTTAAATG 57.863 36.000 0.00 0.00 0.00 2.32
4871 5256 8.396390 CACTCACTTGATCTTCTTAAATGATGG 58.604 37.037 0.00 0.00 0.00 3.51
4909 5361 9.630098 TCCTAACTTTTATGTTTGTAGTCTACG 57.370 33.333 5.55 0.00 0.00 3.51
4984 5436 1.050204 TACTTAGCCGTGGTGTTGGT 58.950 50.000 0.00 0.00 0.00 3.67
5048 5523 0.741326 ACTCACTCGATGCGTATGCT 59.259 50.000 8.69 0.00 43.34 3.79
5186 5661 5.177326 GCACCTTATTTCCATTTGATGCAA 58.823 37.500 0.00 0.00 0.00 4.08
5191 5666 6.183360 CCTTATTTCCATTTGATGCAACAACG 60.183 38.462 9.14 3.79 0.00 4.10
5219 5694 2.473868 CGTATCAACATCGTGCAACCAC 60.474 50.000 0.00 0.00 38.62 4.16
5332 5807 8.589338 TGATATTCTTCTCTATCCTTGGTAAGC 58.411 37.037 0.00 0.00 0.00 3.09
5341 5816 1.423541 TCCTTGGTAAGCTTGCTTCCA 59.576 47.619 14.47 14.66 0.00 3.53
5344 5819 3.259123 CCTTGGTAAGCTTGCTTCCAATT 59.741 43.478 24.74 4.37 37.50 2.32
5348 5823 6.603940 TGGTAAGCTTGCTTCCAATTAATT 57.396 33.333 14.47 0.00 0.00 1.40
5349 5824 6.397272 TGGTAAGCTTGCTTCCAATTAATTG 58.603 36.000 19.40 19.40 37.52 2.32
5350 5825 6.210385 TGGTAAGCTTGCTTCCAATTAATTGA 59.790 34.615 26.32 11.82 40.14 2.57
5436 5912 1.915141 ACTCCCAAATTGACCTGCTG 58.085 50.000 0.00 0.00 0.00 4.41
5439 5915 2.426024 CTCCCAAATTGACCTGCTGATG 59.574 50.000 0.00 0.00 0.00 3.07
5440 5916 1.134907 CCCAAATTGACCTGCTGATGC 60.135 52.381 0.00 0.00 40.20 3.91
5444 5922 1.688772 ATTGACCTGCTGATGCCATC 58.311 50.000 0.00 0.00 38.71 3.51
5522 6000 0.324943 TTGCTTCTAGTGTCTGGGCC 59.675 55.000 0.00 0.00 0.00 5.80
5541 6019 0.452184 CTGTACCGATGCACGTCTCT 59.548 55.000 0.00 0.00 40.78 3.10
5623 6104 7.087409 TGATGTGCCTTTTCACTTATGTATG 57.913 36.000 0.00 0.00 37.81 2.39
5624 6105 5.895636 TGTGCCTTTTCACTTATGTATGG 57.104 39.130 0.00 0.00 37.81 2.74
5641 6122 4.403432 TGTATGGTACTACCTGTTACCAGC 59.597 45.833 6.79 3.34 44.65 4.85
5739 6220 3.274288 CTCTGACCTAGAACAATTGCCC 58.726 50.000 5.05 0.00 34.32 5.36
5907 6391 5.880887 ACTTACTCCCTCCGATTCAAATTTC 59.119 40.000 0.00 0.00 0.00 2.17
5919 6403 8.364142 TCCGATTCAAATTTCAACTAAAACCAT 58.636 29.630 0.00 0.00 0.00 3.55
5928 6412 9.744468 AATTTCAACTAAAACCATGACACTTAC 57.256 29.630 0.00 0.00 0.00 2.34
5929 6413 8.514330 TTTCAACTAAAACCATGACACTTACT 57.486 30.769 0.00 0.00 0.00 2.24
5930 6414 7.724305 TCAACTAAAACCATGACACTTACTC 57.276 36.000 0.00 0.00 0.00 2.59
5931 6415 7.506114 TCAACTAAAACCATGACACTTACTCT 58.494 34.615 0.00 0.00 0.00 3.24
5933 6417 6.827727 ACTAAAACCATGACACTTACTCTGT 58.172 36.000 0.00 0.00 0.00 3.41
5934 6418 7.280356 ACTAAAACCATGACACTTACTCTGTT 58.720 34.615 0.00 0.00 0.00 3.16
5936 6420 9.268268 CTAAAACCATGACACTTACTCTGTTAA 57.732 33.333 0.00 0.00 0.00 2.01
5937 6421 7.492352 AAACCATGACACTTACTCTGTTAAC 57.508 36.000 0.00 0.00 0.00 2.01
5940 6424 5.639506 CCATGACACTTACTCTGTTAACAGG 59.360 44.000 30.35 23.32 43.91 4.00
5941 6425 5.864418 TGACACTTACTCTGTTAACAGGT 57.136 39.130 30.35 26.72 43.91 4.00
5942 6426 6.229936 TGACACTTACTCTGTTAACAGGTT 57.770 37.500 30.35 20.91 43.91 3.50
5944 6428 7.205297 TGACACTTACTCTGTTAACAGGTTAC 58.795 38.462 30.35 16.92 43.91 2.50
5947 6431 8.863086 ACACTTACTCTGTTAACAGGTTACATA 58.137 33.333 30.35 12.22 43.91 2.29
5948 6432 9.871238 CACTTACTCTGTTAACAGGTTACATAT 57.129 33.333 30.35 10.89 43.91 1.78
6040 6524 5.879223 CCTTCAGTTCTGCAATCTCAATAGT 59.121 40.000 0.00 0.00 0.00 2.12
6067 6551 3.641436 GGACAAAGTTCATCCTTGGGTTT 59.359 43.478 0.00 0.00 0.00 3.27
6124 6608 1.303799 ACGAGTACACATCCGTCGCT 61.304 55.000 0.00 0.00 33.94 4.93
6130 6614 0.036388 ACACATCCGTCGCTGGATTT 60.036 50.000 5.61 0.00 46.74 2.17
6145 6629 1.546773 GGATTTGGCCCTGTACACACA 60.547 52.381 0.00 0.00 0.00 3.72
6148 6632 3.047877 GGCCCTGTACACACACGC 61.048 66.667 0.00 0.00 0.00 5.34
6164 6648 2.798501 CGCGCAAGATGGGTACGTG 61.799 63.158 8.75 0.00 43.02 4.49
6175 6659 1.241315 GGGTACGTGGCAGTGCAATT 61.241 55.000 18.61 0.00 0.00 2.32
6181 6665 1.133598 CGTGGCAGTGCAATTGATCAT 59.866 47.619 18.61 0.00 0.00 2.45
6199 6683 5.296035 TGATCATGCTTGCTTTCTATGTGAG 59.704 40.000 0.00 0.00 0.00 3.51
6280 6765 0.038526 TCTCGTCCAAGGCTTTCGTC 60.039 55.000 0.00 0.00 0.00 4.20
6409 6894 0.759346 ACACAAGGAGCGAGGAGTTT 59.241 50.000 0.00 0.00 0.00 2.66
6483 6968 4.855388 GCTGTGATAAATGCAACAAGACAG 59.145 41.667 0.00 0.36 33.09 3.51
6734 7220 2.555547 GCATATGGGAAGGGTGCGC 61.556 63.158 0.00 0.00 0.00 6.09
6788 7274 4.039245 TCTCATTCTGAAACGAGGTCACTT 59.961 41.667 15.88 0.00 0.00 3.16
6873 7359 6.417191 TTTAGCAGAACAATCGAATGGTAC 57.583 37.500 5.30 0.00 0.00 3.34
6936 7422 6.071221 TGACACTAATAGTAATGTTGTCGGGT 60.071 38.462 0.00 0.00 0.00 5.28
6942 7429 2.105134 AGTAATGTTGTCGGGTGGTGAA 59.895 45.455 0.00 0.00 0.00 3.18
6943 7430 2.286365 AATGTTGTCGGGTGGTGAAT 57.714 45.000 0.00 0.00 0.00 2.57
6945 7432 0.470341 TGTTGTCGGGTGGTGAATGA 59.530 50.000 0.00 0.00 0.00 2.57
6963 7450 2.623535 TGAAATGTCGGTCGTTATGGG 58.376 47.619 0.00 0.00 0.00 4.00
6981 7468 9.307121 CGTTATGGGTGATTAATTAATTTTGCA 57.693 29.630 11.92 3.10 0.00 4.08
7015 7502 6.448852 TGTTTGCACGTATACTTAGACTTGA 58.551 36.000 0.56 0.00 0.00 3.02
7060 7553 8.469200 TGAAGTTCTGAATGTTTCTTTTGACAT 58.531 29.630 4.17 0.00 38.08 3.06
7061 7554 9.950680 GAAGTTCTGAATGTTTCTTTTGACATA 57.049 29.630 0.00 0.00 35.55 2.29
7062 7555 9.736023 AAGTTCTGAATGTTTCTTTTGACATAC 57.264 29.630 0.00 0.00 35.55 2.39
7063 7556 9.125026 AGTTCTGAATGTTTCTTTTGACATACT 57.875 29.630 0.00 0.00 35.55 2.12
7064 7557 9.387123 GTTCTGAATGTTTCTTTTGACATACTC 57.613 33.333 0.00 0.00 35.55 2.59
7065 7558 8.099364 TCTGAATGTTTCTTTTGACATACTCC 57.901 34.615 0.00 0.00 35.55 3.85
7066 7559 7.174946 TCTGAATGTTTCTTTTGACATACTCCC 59.825 37.037 0.00 0.00 35.55 4.30
7067 7560 7.004086 TGAATGTTTCTTTTGACATACTCCCT 58.996 34.615 0.00 0.00 35.55 4.20
7068 7561 7.174946 TGAATGTTTCTTTTGACATACTCCCTC 59.825 37.037 0.00 0.00 35.55 4.30
7069 7562 5.313712 TGTTTCTTTTGACATACTCCCTCC 58.686 41.667 0.00 0.00 0.00 4.30
7070 7563 3.887621 TCTTTTGACATACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
7071 7564 3.170717 TCTTTTGACATACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
7072 7565 3.194968 TCTTTTGACATACTCCCTCCGTC 59.805 47.826 0.00 0.00 0.00 4.79
7073 7566 1.481871 TTGACATACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
7074 7567 0.750546 TGACATACTCCCTCCGTCCG 60.751 60.000 0.00 0.00 0.00 4.79
7075 7568 1.453762 GACATACTCCCTCCGTCCGG 61.454 65.000 0.00 0.00 0.00 5.14
7076 7569 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
7077 7570 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
7078 7571 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
7079 7572 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
7080 7573 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
7081 7574 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
7082 7575 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
7083 7576 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
7084 7577 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
7085 7578 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
7086 7579 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
7087 7580 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
7088 7581 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
7089 7582 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
7090 7583 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
7091 7584 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
7092 7585 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
7093 7586 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
7094 7587 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
7095 7588 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
7096 7589 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
7097 7590 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
7098 7591 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
7106 7599 9.492973 ACTTGTCATCAAAATGAATAAAAAGGG 57.507 29.630 0.00 0.00 43.42 3.95
7107 7600 9.709495 CTTGTCATCAAAATGAATAAAAAGGGA 57.291 29.630 0.00 0.00 43.42 4.20
7109 7602 9.656040 TGTCATCAAAATGAATAAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
7110 7603 9.657419 GTCATCAAAATGAATAAAAAGGGATGT 57.343 29.630 0.00 0.00 43.42 3.06
7134 7627 9.442062 TGTATCTAGTACATCCCTTTTTATCCA 57.558 33.333 0.00 0.00 38.37 3.41
7140 7633 8.893563 AGTACATCCCTTTTTATCCATTTTGA 57.106 30.769 0.00 0.00 0.00 2.69
7141 7634 9.492730 AGTACATCCCTTTTTATCCATTTTGAT 57.507 29.630 0.00 0.00 0.00 2.57
7142 7635 9.533253 GTACATCCCTTTTTATCCATTTTGATG 57.467 33.333 0.00 0.00 33.80 3.07
7143 7636 8.378115 ACATCCCTTTTTATCCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
7144 7637 8.260114 ACATCCCTTTTTATCCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
7145 7638 7.789202 TCCCTTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
7146 7639 8.200024 TCCCTTTTTATCCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
7147 7640 8.313292 TCCCTTTTTATCCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
7148 7641 8.096414 CCCTTTTTATCCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
7155 7648 8.599624 ATCCATTTTGATGACAAGTATTTCCT 57.400 30.769 0.00 0.00 37.32 3.36
7156 7649 8.421249 TCCATTTTGATGACAAGTATTTCCTT 57.579 30.769 0.00 0.00 37.32 3.36
7157 7650 8.522830 TCCATTTTGATGACAAGTATTTCCTTC 58.477 33.333 0.00 0.00 37.32 3.46
7158 7651 8.526147 CCATTTTGATGACAAGTATTTCCTTCT 58.474 33.333 0.00 0.00 37.32 2.85
7159 7652 9.918630 CATTTTGATGACAAGTATTTCCTTCTT 57.081 29.630 0.00 0.00 37.32 2.52
7217 7710 9.920133 TTCATTTTGATGACAAATATTTTCGGA 57.080 25.926 0.00 0.00 43.99 4.55
7218 7711 9.352784 TCATTTTGATGACAAATATTTTCGGAC 57.647 29.630 0.00 0.00 43.99 4.79
7219 7712 7.789341 TTTTGATGACAAATATTTTCGGACG 57.211 32.000 0.00 0.00 43.99 4.79
7220 7713 5.478233 TGATGACAAATATTTTCGGACGG 57.522 39.130 0.00 0.00 0.00 4.79
7221 7714 5.179533 TGATGACAAATATTTTCGGACGGA 58.820 37.500 0.00 0.00 0.00 4.69
7222 7715 5.293324 TGATGACAAATATTTTCGGACGGAG 59.707 40.000 0.00 0.00 0.00 4.63
7223 7716 3.936453 TGACAAATATTTTCGGACGGAGG 59.064 43.478 0.00 0.00 0.00 4.30
7224 7717 3.275999 ACAAATATTTTCGGACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
7225 7718 3.054948 ACAAATATTTTCGGACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
7226 7719 3.470645 AATATTTTCGGACGGAGGGAG 57.529 47.619 0.00 0.00 0.00 4.30
7240 7733 2.953648 GGAGGGAGTACTACAGCTCTTC 59.046 54.545 7.57 0.00 32.67 2.87
7261 7754 7.481642 TCTTCTCCATGTCGTTTCTTCTATAC 58.518 38.462 0.00 0.00 0.00 1.47
7404 7897 9.487442 AACCTCTTACTAAATTCTGAGATCTCT 57.513 33.333 22.95 4.78 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 1.519455 CGAGGCTAGCAGGAAACGG 60.519 63.158 18.24 0.00 0.00 4.44
33 35 3.470888 GGGCGAGGCTAGCAGGAA 61.471 66.667 21.15 0.00 36.08 3.36
56 58 0.385390 CCGGCTGAATTATTGTGCCC 59.615 55.000 10.66 0.00 40.40 5.36
97 99 1.636003 AGGGGAGCTACAAGGGAAAAG 59.364 52.381 0.00 0.00 0.00 2.27
106 108 2.044769 TGGTTTACCTAGGGGAGCTACA 59.955 50.000 14.81 0.22 36.82 2.74
170 177 3.431725 CGCGTGAAGAAAGGGGGC 61.432 66.667 0.00 0.00 0.00 5.80
171 178 3.431725 GCGCGTGAAGAAAGGGGG 61.432 66.667 8.43 0.00 0.00 5.40
261 288 6.939163 AGGCAGATAGATTTGGACATTATCAC 59.061 38.462 0.00 0.00 0.00 3.06
263 290 6.597280 GGAGGCAGATAGATTTGGACATTATC 59.403 42.308 0.00 0.00 0.00 1.75
264 291 6.044754 TGGAGGCAGATAGATTTGGACATTAT 59.955 38.462 0.00 0.00 0.00 1.28
265 292 5.369404 TGGAGGCAGATAGATTTGGACATTA 59.631 40.000 0.00 0.00 0.00 1.90
266 293 4.166725 TGGAGGCAGATAGATTTGGACATT 59.833 41.667 0.00 0.00 0.00 2.71
269 296 3.845781 TGGAGGCAGATAGATTTGGAC 57.154 47.619 0.00 0.00 0.00 4.02
271 298 5.185635 TGTTTTTGGAGGCAGATAGATTTGG 59.814 40.000 0.00 0.00 0.00 3.28
273 300 5.106157 CGTGTTTTTGGAGGCAGATAGATTT 60.106 40.000 0.00 0.00 0.00 2.17
274 301 4.396166 CGTGTTTTTGGAGGCAGATAGATT 59.604 41.667 0.00 0.00 0.00 2.40
275 302 3.941483 CGTGTTTTTGGAGGCAGATAGAT 59.059 43.478 0.00 0.00 0.00 1.98
276 303 3.334691 CGTGTTTTTGGAGGCAGATAGA 58.665 45.455 0.00 0.00 0.00 1.98
277 304 2.159517 GCGTGTTTTTGGAGGCAGATAG 60.160 50.000 0.00 0.00 0.00 2.08
278 305 1.810151 GCGTGTTTTTGGAGGCAGATA 59.190 47.619 0.00 0.00 0.00 1.98
279 306 0.598065 GCGTGTTTTTGGAGGCAGAT 59.402 50.000 0.00 0.00 0.00 2.90
280 307 1.452145 GGCGTGTTTTTGGAGGCAGA 61.452 55.000 0.00 0.00 0.00 4.26
281 308 1.007387 GGCGTGTTTTTGGAGGCAG 60.007 57.895 0.00 0.00 0.00 4.85
282 309 2.494530 GGGCGTGTTTTTGGAGGCA 61.495 57.895 0.00 0.00 0.00 4.75
284 311 1.241315 ATCGGGCGTGTTTTTGGAGG 61.241 55.000 0.00 0.00 0.00 4.30
285 312 0.596082 AATCGGGCGTGTTTTTGGAG 59.404 50.000 0.00 0.00 0.00 3.86
286 313 1.001158 GAAATCGGGCGTGTTTTTGGA 60.001 47.619 0.00 0.00 0.00 3.53
318 368 0.878523 CTGCGTGGTTTCTCCGTTGA 60.879 55.000 0.00 0.00 39.52 3.18
363 417 3.775866 TCTTCTCTCTCTTCCTACTCGGA 59.224 47.826 0.00 0.00 41.06 4.55
374 428 2.358322 GGGGACGATCTTCTCTCTCT 57.642 55.000 0.00 0.00 0.00 3.10
402 456 3.471244 CTCTTCCTACTCGGCGCGG 62.471 68.421 8.83 8.94 0.00 6.46
403 457 2.024871 CTCTTCCTACTCGGCGCG 59.975 66.667 0.00 0.00 0.00 6.86
404 458 1.096386 TCTCTCTTCCTACTCGGCGC 61.096 60.000 0.00 0.00 0.00 6.53
405 459 0.941542 CTCTCTCTTCCTACTCGGCG 59.058 60.000 0.00 0.00 0.00 6.46
406 460 2.335316 TCTCTCTCTTCCTACTCGGC 57.665 55.000 0.00 0.00 0.00 5.54
407 461 4.127171 CTCTTCTCTCTCTTCCTACTCGG 58.873 52.174 0.00 0.00 0.00 4.63
408 462 4.127171 CCTCTTCTCTCTCTTCCTACTCG 58.873 52.174 0.00 0.00 0.00 4.18
409 463 5.104485 ACTCCTCTTCTCTCTCTTCCTACTC 60.104 48.000 0.00 0.00 0.00 2.59
410 464 4.788617 ACTCCTCTTCTCTCTCTTCCTACT 59.211 45.833 0.00 0.00 0.00 2.57
411 465 5.112129 ACTCCTCTTCTCTCTCTTCCTAC 57.888 47.826 0.00 0.00 0.00 3.18
412 466 5.968167 AGTACTCCTCTTCTCTCTCTTCCTA 59.032 44.000 0.00 0.00 0.00 2.94
413 467 4.788617 AGTACTCCTCTTCTCTCTCTTCCT 59.211 45.833 0.00 0.00 0.00 3.36
414 468 5.112129 AGTACTCCTCTTCTCTCTCTTCC 57.888 47.826 0.00 0.00 0.00 3.46
415 469 6.885922 AGTAGTACTCCTCTTCTCTCTCTTC 58.114 44.000 0.00 0.00 0.00 2.87
416 470 6.886178 AGTAGTACTCCTCTTCTCTCTCTT 57.114 41.667 0.00 0.00 0.00 2.85
458 512 2.739996 CCCCTGTAGCTCCTGCCTG 61.740 68.421 0.00 0.00 40.80 4.85
459 513 2.366167 CCCCTGTAGCTCCTGCCT 60.366 66.667 0.00 0.00 40.80 4.75
460 514 2.365635 TCCCCTGTAGCTCCTGCC 60.366 66.667 0.00 0.00 40.80 4.85
461 515 0.762461 ATCTCCCCTGTAGCTCCTGC 60.762 60.000 0.00 0.00 40.05 4.85
462 516 1.691434 GAATCTCCCCTGTAGCTCCTG 59.309 57.143 0.00 0.00 0.00 3.86
586 649 2.339712 CTTGGGTTTGGCTTGCGG 59.660 61.111 0.00 0.00 0.00 5.69
587 650 2.339712 CCTTGGGTTTGGCTTGCG 59.660 61.111 0.00 0.00 0.00 4.85
588 651 2.031012 GCCTTGGGTTTGGCTTGC 59.969 61.111 0.00 0.00 45.26 4.01
593 656 1.530013 CTGCTCTGCCTTGGGTTTGG 61.530 60.000 0.00 0.00 0.00 3.28
594 657 0.538057 TCTGCTCTGCCTTGGGTTTG 60.538 55.000 0.00 0.00 0.00 2.93
595 658 0.251077 CTCTGCTCTGCCTTGGGTTT 60.251 55.000 0.00 0.00 0.00 3.27
600 663 0.741574 CTCTGCTCTGCTCTGCCTTG 60.742 60.000 0.00 0.00 0.00 3.61
615 683 4.778415 CCGCGTCGTCACCCTCTG 62.778 72.222 4.92 0.00 0.00 3.35
740 813 3.706373 CTGGTGGTGGGTCGGAGG 61.706 72.222 0.00 0.00 0.00 4.30
745 818 3.850098 CTGGTGCTGGTGGTGGGTC 62.850 68.421 0.00 0.00 0.00 4.46
746 819 3.889692 CTGGTGCTGGTGGTGGGT 61.890 66.667 0.00 0.00 0.00 4.51
785 866 2.722487 CCAGGACGCTACCGCTAG 59.278 66.667 0.00 0.00 38.22 3.42
786 867 2.831742 CCCAGGACGCTACCGCTA 60.832 66.667 0.00 0.00 38.22 4.26
787 868 4.753662 TCCCAGGACGCTACCGCT 62.754 66.667 0.00 0.00 38.22 5.52
788 869 4.208686 CTCCCAGGACGCTACCGC 62.209 72.222 0.00 0.00 38.22 5.68
789 870 2.754658 ACTCCCAGGACGCTACCG 60.755 66.667 0.00 0.00 41.14 4.02
790 871 2.722201 CCACTCCCAGGACGCTACC 61.722 68.421 0.00 0.00 0.00 3.18
813 894 2.245582 GGCGGTATGGTATGGTAGTCT 58.754 52.381 0.00 0.00 0.00 3.24
814 895 1.965643 TGGCGGTATGGTATGGTAGTC 59.034 52.381 0.00 0.00 0.00 2.59
956 1060 3.545481 CAGATCACACGCGCCGAC 61.545 66.667 5.73 0.00 0.00 4.79
957 1061 3.683587 CTCAGATCACACGCGCCGA 62.684 63.158 5.73 0.00 0.00 5.54
1035 1140 3.003173 TCCTGCTTCTGTCCCCCG 61.003 66.667 0.00 0.00 0.00 5.73
1039 1144 1.079750 GGTCGTCCTGCTTCTGTCC 60.080 63.158 0.00 0.00 0.00 4.02
1040 1145 1.968310 AGGTCGTCCTGCTTCTGTC 59.032 57.895 0.00 0.00 43.33 3.51
1041 1146 4.199804 AGGTCGTCCTGCTTCTGT 57.800 55.556 0.00 0.00 43.33 3.41
1119 1224 2.469516 GGAGCATTTACGCCACGGG 61.470 63.158 0.00 0.00 0.00 5.28
1129 1234 0.922626 GGGAGGGAGAAGGAGCATTT 59.077 55.000 0.00 0.00 0.00 2.32
1131 1236 0.045469 AAGGGAGGGAGAAGGAGCAT 59.955 55.000 0.00 0.00 0.00 3.79
1138 1243 0.340208 GGAGAGGAAGGGAGGGAGAA 59.660 60.000 0.00 0.00 0.00 2.87
1139 1244 1.595058 GGGAGAGGAAGGGAGGGAGA 61.595 65.000 0.00 0.00 0.00 3.71
1196 1305 3.216292 ACAAAAACCGCTGGCGCT 61.216 55.556 7.64 0.00 38.24 5.92
1200 1309 2.095053 CCAAAAACACAAAAACCGCTGG 59.905 45.455 0.00 0.00 0.00 4.85
1202 1311 2.351455 CCCAAAAACACAAAAACCGCT 58.649 42.857 0.00 0.00 0.00 5.52
1212 1321 1.007387 CTCTGCCGCCCAAAAACAC 60.007 57.895 0.00 0.00 0.00 3.32
1215 1324 0.827368 AAAACTCTGCCGCCCAAAAA 59.173 45.000 0.00 0.00 0.00 1.94
1216 1325 0.387565 GAAAACTCTGCCGCCCAAAA 59.612 50.000 0.00 0.00 0.00 2.44
1217 1326 0.467290 AGAAAACTCTGCCGCCCAAA 60.467 50.000 0.00 0.00 0.00 3.28
1218 1327 1.150536 AGAAAACTCTGCCGCCCAA 59.849 52.632 0.00 0.00 0.00 4.12
1220 1329 2.335712 CCAGAAAACTCTGCCGCCC 61.336 63.158 0.00 0.00 36.46 6.13
1221 1330 1.172812 AACCAGAAAACTCTGCCGCC 61.173 55.000 0.00 0.00 36.46 6.13
1223 1332 0.040067 GCAACCAGAAAACTCTGCCG 60.040 55.000 0.00 0.00 36.46 5.69
1227 1356 2.154462 CCATCGCAACCAGAAAACTCT 58.846 47.619 0.00 0.00 0.00 3.24
1229 1358 0.598065 GCCATCGCAACCAGAAAACT 59.402 50.000 0.00 0.00 34.03 2.66
1256 1385 1.065358 ACGGCAAAGTTCGTGATACG 58.935 50.000 0.00 0.00 44.19 3.06
1258 1387 1.195900 GCAACGGCAAAGTTCGTGATA 59.804 47.619 0.00 0.00 39.70 2.15
1286 1428 2.026208 AACCCACCACCCCCGAAAAT 62.026 55.000 0.00 0.00 0.00 1.82
1326 1474 1.071385 CGAAGCATCTAGGAGCCCATT 59.929 52.381 4.07 0.00 0.00 3.16
1485 1638 0.663153 GGATATTCAACGCAGCACCC 59.337 55.000 0.00 0.00 0.00 4.61
1491 1644 5.353394 AAACTAGGAGGATATTCAACGCA 57.647 39.130 0.00 0.00 0.00 5.24
1492 1645 7.379750 AGATAAACTAGGAGGATATTCAACGC 58.620 38.462 0.00 0.00 0.00 4.84
1515 1671 2.370281 GCAGCAGCAGTTACACTAGA 57.630 50.000 0.00 0.00 41.58 2.43
1551 1720 4.565022 TGTTGAATGTCGAGTAGCATCAA 58.435 39.130 0.00 0.00 0.00 2.57
1574 1746 5.856156 TGACAATCATGCAAATTCCTTGTT 58.144 33.333 0.00 0.00 37.36 2.83
1597 1769 4.564616 AATCCATCCAAAATCCCCATCT 57.435 40.909 0.00 0.00 0.00 2.90
1653 1830 1.087501 GATTCAGAAACCAGTCCGCC 58.912 55.000 0.00 0.00 0.00 6.13
1656 1833 1.734465 CGCAGATTCAGAAACCAGTCC 59.266 52.381 0.00 0.00 0.00 3.85
1690 1867 2.364324 ACACTGACTAAGTCAAGGCGAA 59.636 45.455 0.00 0.00 42.26 4.70
1709 1888 5.305139 TCGAAGTCATAATCGAGTTGACA 57.695 39.130 21.38 6.47 42.61 3.58
1722 1902 4.442375 AACTCGTCAGAATCGAAGTCAT 57.558 40.909 0.00 0.00 36.89 3.06
1748 1928 6.431198 TCGTAAAAATAGCACCAGATTTCC 57.569 37.500 0.00 0.00 0.00 3.13
1764 1944 6.232692 AGTACTGCCCTACAAAATCGTAAAA 58.767 36.000 0.00 0.00 0.00 1.52
1768 1948 3.975168 AGTACTGCCCTACAAAATCGT 57.025 42.857 0.00 0.00 0.00 3.73
1792 1972 5.391950 GCGTGAGTTCATATGAAACCAATGT 60.392 40.000 19.55 0.00 35.58 2.71
1794 1974 4.201812 CGCGTGAGTTCATATGAAACCAAT 60.202 41.667 19.55 4.20 35.58 3.16
1830 2010 4.097863 GGTGCACGCGGTAAAGCC 62.098 66.667 12.47 0.52 0.00 4.35
1980 2160 0.690192 ACAACGATGGGTGGACATGA 59.310 50.000 0.00 0.00 0.00 3.07
2001 2181 3.181489 GGAGAATCAATGCAGCTGAAAGG 60.181 47.826 20.43 3.41 36.25 3.11
2031 2214 0.811281 GAAATGAGAAACCCCTGCCG 59.189 55.000 0.00 0.00 0.00 5.69
2040 2223 8.359642 CACAAGGTAGAAAATGGAAATGAGAAA 58.640 33.333 0.00 0.00 0.00 2.52
2041 2224 7.505585 ACACAAGGTAGAAAATGGAAATGAGAA 59.494 33.333 0.00 0.00 0.00 2.87
2042 2225 7.004086 ACACAAGGTAGAAAATGGAAATGAGA 58.996 34.615 0.00 0.00 0.00 3.27
2043 2226 7.086376 CACACAAGGTAGAAAATGGAAATGAG 58.914 38.462 0.00 0.00 0.00 2.90
2044 2227 6.549364 ACACACAAGGTAGAAAATGGAAATGA 59.451 34.615 0.00 0.00 0.00 2.57
2085 2276 7.361286 GGGAGCAAAGTATCTAAAACAGACAAG 60.361 40.741 0.00 0.00 35.62 3.16
2107 2298 2.476821 CAAAACAAAGCTGCTTGGGAG 58.523 47.619 20.28 11.28 0.00 4.30
2142 2333 0.035915 TTGTACTGCAAGCGCCCATA 60.036 50.000 2.29 0.00 37.60 2.74
2215 2406 2.366916 ACACAGACAAGGGACTCAGAAG 59.633 50.000 0.00 0.00 38.49 2.85
2312 2505 2.021457 AGGGGTACACATTAAATGCGC 58.979 47.619 0.00 0.00 0.00 6.09
2567 2764 6.709846 AGTTATGAGCAGGAATTCAAGATAGC 59.290 38.462 7.93 1.78 0.00 2.97
2623 2850 5.807011 GTCAAAGTTTGTGATGCTTGACTTT 59.193 36.000 15.08 0.00 37.70 2.66
2636 2863 4.709397 TCCACAAATCAGGTCAAAGTTTGT 59.291 37.500 15.08 0.00 41.98 2.83
2649 2876 6.303054 TGTAAATGTTCTCCTCCACAAATCA 58.697 36.000 0.00 0.00 0.00 2.57
2650 2877 6.817765 TGTAAATGTTCTCCTCCACAAATC 57.182 37.500 0.00 0.00 0.00 2.17
2661 2888 7.792374 TGGCATTCTAGATGTAAATGTTCTC 57.208 36.000 0.00 0.00 33.82 2.87
2663 2890 8.462016 AGTTTGGCATTCTAGATGTAAATGTTC 58.538 33.333 0.00 0.00 33.82 3.18
2813 3165 6.315144 TGTTAACATCACTCCGTTCCATAATG 59.685 38.462 3.59 0.00 0.00 1.90
2823 3175 3.198068 CTCCCATGTTAACATCACTCCG 58.802 50.000 18.25 6.27 33.61 4.63
2835 3187 2.986728 ACCTTACAACTCCTCCCATGTT 59.013 45.455 0.00 0.00 0.00 2.71
2845 3197 4.154918 CCAGAGCATTCAACCTTACAACTC 59.845 45.833 0.00 0.00 0.00 3.01
2868 3220 6.917533 ACTTTGTGTTCATCATTTCTCCATC 58.082 36.000 0.00 0.00 0.00 3.51
2887 3239 9.748708 TCAATATTCTGAACAAAAAGGACTTTG 57.251 29.630 0.00 0.00 41.24 2.77
2888 3240 9.750125 GTCAATATTCTGAACAAAAAGGACTTT 57.250 29.630 0.00 0.00 0.00 2.66
2976 3356 2.733227 CGCAAGGCTAGCAAAAAGATGG 60.733 50.000 18.24 0.00 0.00 3.51
3475 3857 4.336433 CCTGCAAGTATGATCGAAATGGTT 59.664 41.667 0.00 0.00 0.00 3.67
3594 3978 8.700051 TCTTCAAAAACAAAATCCAGGTGATTA 58.300 29.630 0.00 0.00 42.97 1.75
3762 4146 1.398390 CGGTGCCTCTGAAATAGCAAC 59.602 52.381 0.00 0.00 39.58 4.17
3768 4152 0.036732 TGCTTCGGTGCCTCTGAAAT 59.963 50.000 2.70 0.00 40.41 2.17
3792 4176 4.408182 AACGCTATTCCTGCTAGAACAT 57.592 40.909 0.00 0.00 0.00 2.71
3870 4254 1.939255 GCTATCAAAGGAGCAGCTGAC 59.061 52.381 20.43 10.42 38.62 3.51
3918 4302 4.224147 TCAGATCTTACCGATGGAAAACCA 59.776 41.667 0.00 0.00 30.84 3.67
3945 4329 7.404139 AAACAAGTATCGAGTAGAAACACAC 57.596 36.000 0.00 0.00 0.00 3.82
4004 4388 6.150976 CCAATCTCAACACATTTAGCAACCTA 59.849 38.462 0.00 0.00 0.00 3.08
4123 4507 1.263356 AAATGCAGCTGGAGCACATT 58.737 45.000 17.12 12.80 45.95 2.71
4303 4687 1.200020 CGGCAATGAAACTGGGTCTTC 59.800 52.381 0.00 0.00 0.00 2.87
4312 4696 0.387239 GGTCAGTGCGGCAATGAAAC 60.387 55.000 31.35 23.27 40.09 2.78
4333 4717 2.357154 GGCACCACCAATTAGTCCAGAT 60.357 50.000 0.00 0.00 38.86 2.90
4424 4809 5.723672 AGTAGAAGAAACGGAGACATTCA 57.276 39.130 0.00 0.00 0.00 2.57
4845 5230 8.396390 CCATCATTTAAGAAGATCAAGTGAGTG 58.604 37.037 0.00 0.00 0.00 3.51
4892 5344 5.481473 AGGAACCCGTAGACTACAAACATAA 59.519 40.000 12.99 0.00 0.00 1.90
4909 5361 2.627699 TGAAACAGCAATGAAGGAACCC 59.372 45.455 0.00 0.00 0.00 4.11
5048 5523 3.507411 ACACCCTGTAGCAAGAAGAGTA 58.493 45.455 0.00 0.00 0.00 2.59
5088 5563 6.735556 AGATCCATTTCCAGTTCCAAATAGT 58.264 36.000 0.00 0.00 0.00 2.12
5191 5666 4.738252 TGCACGATGTTGATACGAATAGTC 59.262 41.667 0.00 0.00 0.00 2.59
5207 5682 2.009774 GAAGCATAGTGGTTGCACGAT 58.990 47.619 0.00 0.00 42.62 3.73
5219 5694 5.061808 GCATTTTCACTGCAAAGAAGCATAG 59.938 40.000 0.00 0.00 44.68 2.23
5407 5883 8.028938 CAGGTCAATTTGGGAGTTACTAAATTG 58.971 37.037 18.44 18.44 45.17 2.32
5439 5915 2.953466 ACAATGATGCAACAGATGGC 57.047 45.000 14.34 0.00 0.00 4.40
5440 5916 5.684184 CGAAATACAATGATGCAACAGATGG 59.316 40.000 14.34 2.61 0.00 3.51
5444 5922 6.194463 CCTACGAAATACAATGATGCAACAG 58.806 40.000 2.25 0.00 0.00 3.16
5522 6000 0.452184 AGAGACGTGCATCGGTACAG 59.548 55.000 12.18 0.00 44.69 2.74
5541 6019 4.645535 ACACAGCTCTTCTAATCAAGCAA 58.354 39.130 0.00 0.00 37.22 3.91
5641 6122 9.478019 GTGCTAAGCATTATAAGCAATATTACG 57.522 33.333 0.00 0.00 45.81 3.18
5739 6220 3.305335 CCAAATTTTCCTGGGAAGACACG 60.305 47.826 2.19 0.00 35.38 4.49
5884 6365 5.880332 TGAAATTTGAATCGGAGGGAGTAAG 59.120 40.000 0.00 0.00 0.00 2.34
5907 6391 7.226720 ACAGAGTAAGTGTCATGGTTTTAGTTG 59.773 37.037 0.00 0.00 0.00 3.16
5919 6403 5.864418 ACCTGTTAACAGAGTAAGTGTCA 57.136 39.130 32.50 0.00 46.59 3.58
5927 6411 8.362464 TCTCATATGTAACCTGTTAACAGAGT 57.638 34.615 32.50 24.73 46.59 3.24
5928 6412 9.653287 TTTCTCATATGTAACCTGTTAACAGAG 57.347 33.333 32.50 24.16 46.59 3.35
5956 6440 7.170965 ACCAGAGCTTCTATCAGAATTCAAAA 58.829 34.615 8.44 0.00 33.13 2.44
6040 6524 4.584325 CCAAGGATGAACTTTGTCCTGAAA 59.416 41.667 0.00 0.00 41.40 2.69
6067 6551 3.295093 TGAAAAGCCCATGAACACTGAA 58.705 40.909 0.00 0.00 0.00 3.02
6124 6608 0.774276 TGTGTACAGGGCCAAATCCA 59.226 50.000 6.18 0.00 0.00 3.41
6130 6614 2.423874 CGTGTGTGTACAGGGCCA 59.576 61.111 6.18 0.00 38.64 5.36
6145 6629 2.508439 CGTACCCATCTTGCGCGT 60.508 61.111 8.43 0.00 0.00 6.01
6148 6632 2.461110 GCCACGTACCCATCTTGCG 61.461 63.158 0.00 0.00 0.00 4.85
6164 6648 1.136305 AGCATGATCAATTGCACTGCC 59.864 47.619 20.45 1.59 41.35 4.85
6175 6659 5.187687 TCACATAGAAAGCAAGCATGATCA 58.812 37.500 0.00 0.00 0.00 2.92
6181 6665 1.733912 CGCTCACATAGAAAGCAAGCA 59.266 47.619 0.00 0.00 35.76 3.91
6337 6822 0.177373 GGTATCCGCGGTCTTTCCTT 59.823 55.000 27.15 3.64 0.00 3.36
6409 6894 0.035739 GGTTGAACGGCAGGGAGTAA 59.964 55.000 0.00 0.00 0.00 2.24
6483 6968 9.843334 GCAGATAGATAGTACATGTAACCTTAC 57.157 37.037 7.25 0.00 0.00 2.34
6615 7100 1.531423 TCTAGCGAGACACCGAAACT 58.469 50.000 0.00 0.00 0.00 2.66
6788 7274 2.230992 GCACCACAATGGCAGTCAATAA 59.769 45.455 0.00 0.00 42.67 1.40
6873 7359 8.026026 CACTGATACATAGCATAACAGGTAGAG 58.974 40.741 0.00 0.00 0.00 2.43
6936 7422 2.073056 CGACCGACATTTCATTCACCA 58.927 47.619 0.00 0.00 0.00 4.17
6942 7429 3.202906 CCCATAACGACCGACATTTCAT 58.797 45.455 0.00 0.00 0.00 2.57
6943 7430 2.027929 ACCCATAACGACCGACATTTCA 60.028 45.455 0.00 0.00 0.00 2.69
6945 7432 2.027929 TCACCCATAACGACCGACATTT 60.028 45.455 0.00 0.00 0.00 2.32
6963 7450 7.956943 GCTGTGGTTGCAAAATTAATTAATCAC 59.043 33.333 11.08 14.09 0.00 3.06
6981 7468 0.248990 CGTGCAAACATGCTGTGGTT 60.249 50.000 2.22 0.00 38.61 3.67
7054 7547 1.481871 GGACGGAGGGAGTATGTCAA 58.518 55.000 0.00 0.00 0.00 3.18
7060 7553 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
7061 7554 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
7062 7555 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
7063 7556 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
7064 7557 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
7065 7558 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
7066 7559 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
7067 7560 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
7068 7561 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
7069 7562 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
7070 7563 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
7071 7564 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
7072 7565 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
7073 7566 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
7080 7573 9.492973 CCCTTTTTATTCATTTTGATGACAAGT 57.507 29.630 0.00 0.00 37.32 3.16
7081 7574 9.709495 TCCCTTTTTATTCATTTTGATGACAAG 57.291 29.630 0.00 0.00 37.32 3.16
7083 7576 9.656040 CATCCCTTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
7084 7577 9.657419 ACATCCCTTTTTATTCATTTTGATGAC 57.343 29.630 0.00 0.00 32.39 3.06
7114 7607 9.983024 TCAAAATGGATAAAAAGGGATGTACTA 57.017 29.630 0.00 0.00 0.00 1.82
7115 7608 8.893563 TCAAAATGGATAAAAAGGGATGTACT 57.106 30.769 0.00 0.00 0.00 2.73
7116 7609 9.533253 CATCAAAATGGATAAAAAGGGATGTAC 57.467 33.333 0.00 0.00 0.00 2.90
7117 7610 9.486123 TCATCAAAATGGATAAAAAGGGATGTA 57.514 29.630 0.00 0.00 33.42 2.29
7118 7611 8.260114 GTCATCAAAATGGATAAAAAGGGATGT 58.740 33.333 0.00 0.00 33.42 3.06
7119 7612 8.259411 TGTCATCAAAATGGATAAAAAGGGATG 58.741 33.333 0.00 0.00 33.42 3.51
7120 7613 8.378115 TGTCATCAAAATGGATAAAAAGGGAT 57.622 30.769 0.00 0.00 33.42 3.85
7121 7614 7.789202 TGTCATCAAAATGGATAAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
7122 7615 8.096414 ACTTGTCATCAAAATGGATAAAAAGGG 58.904 33.333 0.00 0.00 33.42 3.95
7129 7622 9.699410 AGGAAATACTTGTCATCAAAATGGATA 57.301 29.630 0.00 0.00 33.42 2.59
7130 7623 8.599624 AGGAAATACTTGTCATCAAAATGGAT 57.400 30.769 0.00 0.00 33.42 3.41
7131 7624 8.421249 AAGGAAATACTTGTCATCAAAATGGA 57.579 30.769 0.00 0.00 33.42 3.41
7132 7625 8.526147 AGAAGGAAATACTTGTCATCAAAATGG 58.474 33.333 0.00 0.00 33.42 3.16
7133 7626 9.918630 AAGAAGGAAATACTTGTCATCAAAATG 57.081 29.630 0.00 0.00 32.87 2.32
7191 7684 9.920133 TCCGAAAATATTTGTCATCAAAATGAA 57.080 25.926 0.39 0.00 44.97 2.57
7192 7685 9.352784 GTCCGAAAATATTTGTCATCAAAATGA 57.647 29.630 0.39 0.00 44.97 2.57
7193 7686 8.313227 CGTCCGAAAATATTTGTCATCAAAATG 58.687 33.333 0.39 0.00 44.97 2.32
7194 7687 7.487829 CCGTCCGAAAATATTTGTCATCAAAAT 59.512 33.333 0.39 0.00 44.97 1.82
7195 7688 6.804295 CCGTCCGAAAATATTTGTCATCAAAA 59.196 34.615 0.39 0.00 44.97 2.44
7196 7689 6.149640 TCCGTCCGAAAATATTTGTCATCAAA 59.850 34.615 0.39 0.00 45.71 2.69
7197 7690 5.644206 TCCGTCCGAAAATATTTGTCATCAA 59.356 36.000 0.39 0.00 0.00 2.57
7198 7691 5.179533 TCCGTCCGAAAATATTTGTCATCA 58.820 37.500 0.39 0.00 0.00 3.07
7199 7692 5.277345 CCTCCGTCCGAAAATATTTGTCATC 60.277 44.000 0.39 0.00 0.00 2.92
7200 7693 4.574828 CCTCCGTCCGAAAATATTTGTCAT 59.425 41.667 0.39 0.00 0.00 3.06
7201 7694 3.936453 CCTCCGTCCGAAAATATTTGTCA 59.064 43.478 0.39 0.00 0.00 3.58
7202 7695 3.311596 CCCTCCGTCCGAAAATATTTGTC 59.688 47.826 0.39 1.54 0.00 3.18
7203 7696 3.054948 TCCCTCCGTCCGAAAATATTTGT 60.055 43.478 0.39 0.00 0.00 2.83
7204 7697 3.537580 TCCCTCCGTCCGAAAATATTTG 58.462 45.455 0.39 0.00 0.00 2.32
7205 7698 3.199289 ACTCCCTCCGTCCGAAAATATTT 59.801 43.478 0.00 0.00 0.00 1.40
7206 7699 2.770232 ACTCCCTCCGTCCGAAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
7207 7700 2.395619 ACTCCCTCCGTCCGAAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
7208 7701 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
7209 7702 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
7210 7703 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
7211 7704 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
7212 7705 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
7213 7706 0.179000 GTAGTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
7214 7707 0.107508 TGTAGTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
7215 7708 1.677942 CTGTAGTACTCCCTCCGTCC 58.322 60.000 0.00 0.00 0.00 4.79
7216 7709 1.023502 GCTGTAGTACTCCCTCCGTC 58.976 60.000 0.00 0.00 0.00 4.79
7217 7710 0.624785 AGCTGTAGTACTCCCTCCGT 59.375 55.000 0.00 0.00 0.00 4.69
7218 7711 1.134037 AGAGCTGTAGTACTCCCTCCG 60.134 57.143 0.00 0.00 33.18 4.63
7219 7712 2.740506 AGAGCTGTAGTACTCCCTCC 57.259 55.000 0.00 0.00 33.18 4.30
7220 7713 3.881089 GAGAAGAGCTGTAGTACTCCCTC 59.119 52.174 0.00 1.36 33.18 4.30
7221 7714 3.372241 GGAGAAGAGCTGTAGTACTCCCT 60.372 52.174 0.00 0.00 37.17 4.20
7222 7715 2.953648 GGAGAAGAGCTGTAGTACTCCC 59.046 54.545 0.00 0.00 37.17 4.30
7223 7716 3.622630 TGGAGAAGAGCTGTAGTACTCC 58.377 50.000 0.00 14.72 41.61 3.85
7224 7717 4.642885 ACATGGAGAAGAGCTGTAGTACTC 59.357 45.833 0.00 0.00 0.00 2.59
7225 7718 4.605183 ACATGGAGAAGAGCTGTAGTACT 58.395 43.478 0.00 0.00 0.00 2.73
7226 7719 4.496673 CGACATGGAGAAGAGCTGTAGTAC 60.497 50.000 0.00 0.00 0.00 2.73
7240 7733 7.429633 AGATGTATAGAAGAAACGACATGGAG 58.570 38.462 0.00 0.00 0.00 3.86
7420 7913 4.970003 CCATCAAACTTCGACAAACTGAAC 59.030 41.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.