Multiple sequence alignment - TraesCS6B01G335800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G335800 chr6B 100.000 2411 0 0 1 2411 591190741 591188331 0.000000e+00 4453.0
1 TraesCS6B01G335800 chr4B 96.374 1186 35 5 528 1711 31985940 31987119 0.000000e+00 1945.0
2 TraesCS6B01G335800 chr3B 95.092 1202 39 8 530 1714 177886374 177885176 0.000000e+00 1875.0
3 TraesCS6B01G335800 chr2B 94.467 1211 46 8 524 1714 540751090 540749881 0.000000e+00 1845.0
4 TraesCS6B01G335800 chr2B 94.732 1177 41 12 528 1686 672029312 672028139 0.000000e+00 1810.0
5 TraesCS6B01G335800 chr2B 95.041 121 6 0 313 433 744413132 744413252 8.800000e-45 191.0
6 TraesCS6B01G335800 chr1B 94.693 1187 48 6 528 1711 39987944 39986770 0.000000e+00 1829.0
7 TraesCS6B01G335800 chr1B 94.492 236 13 0 198 433 457441591 457441826 4.900000e-97 364.0
8 TraesCS6B01G335800 chr5B 94.347 1203 47 6 528 1711 229024000 229025200 0.000000e+00 1825.0
9 TraesCS6B01G335800 chr5B 94.468 1193 50 7 528 1716 24103910 24102730 0.000000e+00 1823.0
10 TraesCS6B01G335800 chr5B 96.610 236 8 0 198 433 99373376 99373611 2.250000e-105 392.0
11 TraesCS6B01G335800 chr4A 94.421 1201 43 12 528 1711 719936099 719934906 0.000000e+00 1825.0
12 TraesCS6B01G335800 chr7B 94.430 1185 45 7 528 1711 655572449 655571285 0.000000e+00 1803.0
13 TraesCS6B01G335800 chr6D 96.719 701 19 2 1711 2411 394875836 394875140 0.000000e+00 1164.0
14 TraesCS6B01G335800 chr6D 97.436 39 1 0 162 200 394875984 394875946 1.550000e-07 67.6
15 TraesCS6B01G335800 chr6A 93.050 705 32 9 1720 2411 541278366 541277666 0.000000e+00 1014.0
16 TraesCS6B01G335800 chr6A 93.939 66 3 1 467 531 541278440 541278375 5.490000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G335800 chr6B 591188331 591190741 2410 True 4453.0 4453 100.0000 1 2411 1 chr6B.!!$R1 2410
1 TraesCS6B01G335800 chr4B 31985940 31987119 1179 False 1945.0 1945 96.3740 528 1711 1 chr4B.!!$F1 1183
2 TraesCS6B01G335800 chr3B 177885176 177886374 1198 True 1875.0 1875 95.0920 530 1714 1 chr3B.!!$R1 1184
3 TraesCS6B01G335800 chr2B 540749881 540751090 1209 True 1845.0 1845 94.4670 524 1714 1 chr2B.!!$R1 1190
4 TraesCS6B01G335800 chr2B 672028139 672029312 1173 True 1810.0 1810 94.7320 528 1686 1 chr2B.!!$R2 1158
5 TraesCS6B01G335800 chr1B 39986770 39987944 1174 True 1829.0 1829 94.6930 528 1711 1 chr1B.!!$R1 1183
6 TraesCS6B01G335800 chr5B 229024000 229025200 1200 False 1825.0 1825 94.3470 528 1711 1 chr5B.!!$F2 1183
7 TraesCS6B01G335800 chr5B 24102730 24103910 1180 True 1823.0 1823 94.4680 528 1716 1 chr5B.!!$R1 1188
8 TraesCS6B01G335800 chr4A 719934906 719936099 1193 True 1825.0 1825 94.4210 528 1711 1 chr4A.!!$R1 1183
9 TraesCS6B01G335800 chr7B 655571285 655572449 1164 True 1803.0 1803 94.4300 528 1711 1 chr7B.!!$R1 1183
10 TraesCS6B01G335800 chr6D 394875140 394875984 844 True 615.8 1164 97.0775 162 2411 2 chr6D.!!$R1 2249
11 TraesCS6B01G335800 chr6A 541277666 541278440 774 True 556.5 1014 93.4945 467 2411 2 chr6A.!!$R1 1944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.034767 CCATGGAGCCAGCTTCAGAA 60.035 55.0 5.56 0.0 34.64 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 1948 0.031449 CCAGCTAGGCTCTAGAACGC 59.969 60.0 11.96 0.0 36.4 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.672983 GCATAGTGCATGTTAATATAGGTGT 57.327 36.000 0.00 0.00 44.26 4.16
28 29 8.099364 GCATAGTGCATGTTAATATAGGTGTT 57.901 34.615 0.00 0.00 44.26 3.32
29 30 8.567948 GCATAGTGCATGTTAATATAGGTGTTT 58.432 33.333 0.00 0.00 44.26 2.83
59 60 3.495434 TGATAGCATGATGATGTGGCA 57.505 42.857 0.00 0.00 31.50 4.92
60 61 4.028993 TGATAGCATGATGATGTGGCAT 57.971 40.909 0.00 0.00 31.50 4.40
61 62 4.007659 TGATAGCATGATGATGTGGCATC 58.992 43.478 0.00 2.44 43.84 3.91
80 81 5.966636 CATCATTGCATGTTGAGAATTGG 57.033 39.130 0.00 0.00 32.96 3.16
81 82 5.656480 CATCATTGCATGTTGAGAATTGGA 58.344 37.500 0.00 0.00 32.96 3.53
82 83 5.319140 TCATTGCATGTTGAGAATTGGAG 57.681 39.130 0.00 0.00 0.00 3.86
83 84 4.768448 TCATTGCATGTTGAGAATTGGAGT 59.232 37.500 0.00 0.00 0.00 3.85
84 85 5.244402 TCATTGCATGTTGAGAATTGGAGTT 59.756 36.000 0.00 0.00 0.00 3.01
85 86 6.433716 TCATTGCATGTTGAGAATTGGAGTTA 59.566 34.615 0.00 0.00 0.00 2.24
86 87 5.885230 TGCATGTTGAGAATTGGAGTTAG 57.115 39.130 0.00 0.00 0.00 2.34
87 88 5.316167 TGCATGTTGAGAATTGGAGTTAGT 58.684 37.500 0.00 0.00 0.00 2.24
88 89 6.472016 TGCATGTTGAGAATTGGAGTTAGTA 58.528 36.000 0.00 0.00 0.00 1.82
89 90 6.595326 TGCATGTTGAGAATTGGAGTTAGTAG 59.405 38.462 0.00 0.00 0.00 2.57
90 91 6.595716 GCATGTTGAGAATTGGAGTTAGTAGT 59.404 38.462 0.00 0.00 0.00 2.73
91 92 7.413438 GCATGTTGAGAATTGGAGTTAGTAGTG 60.413 40.741 0.00 0.00 0.00 2.74
92 93 6.464222 TGTTGAGAATTGGAGTTAGTAGTGG 58.536 40.000 0.00 0.00 0.00 4.00
93 94 5.677319 TGAGAATTGGAGTTAGTAGTGGG 57.323 43.478 0.00 0.00 0.00 4.61
94 95 5.091552 TGAGAATTGGAGTTAGTAGTGGGT 58.908 41.667 0.00 0.00 0.00 4.51
95 96 6.258354 TGAGAATTGGAGTTAGTAGTGGGTA 58.742 40.000 0.00 0.00 0.00 3.69
96 97 6.901300 TGAGAATTGGAGTTAGTAGTGGGTAT 59.099 38.462 0.00 0.00 0.00 2.73
97 98 8.063153 TGAGAATTGGAGTTAGTAGTGGGTATA 58.937 37.037 0.00 0.00 0.00 1.47
98 99 9.091220 GAGAATTGGAGTTAGTAGTGGGTATAT 57.909 37.037 0.00 0.00 0.00 0.86
101 102 8.896722 ATTGGAGTTAGTAGTGGGTATATAGG 57.103 38.462 0.00 0.00 0.00 2.57
102 103 7.652757 TGGAGTTAGTAGTGGGTATATAGGA 57.347 40.000 0.00 0.00 0.00 2.94
103 104 8.240881 TGGAGTTAGTAGTGGGTATATAGGAT 57.759 38.462 0.00 0.00 0.00 3.24
104 105 8.685311 TGGAGTTAGTAGTGGGTATATAGGATT 58.315 37.037 0.00 0.00 0.00 3.01
105 106 9.544579 GGAGTTAGTAGTGGGTATATAGGATTT 57.455 37.037 0.00 0.00 0.00 2.17
110 111 8.653036 AGTAGTGGGTATATAGGATTTGAGTC 57.347 38.462 0.00 0.00 0.00 3.36
111 112 8.232412 AGTAGTGGGTATATAGGATTTGAGTCA 58.768 37.037 0.00 0.00 0.00 3.41
112 113 7.546250 AGTGGGTATATAGGATTTGAGTCAG 57.454 40.000 0.00 0.00 0.00 3.51
113 114 7.076446 AGTGGGTATATAGGATTTGAGTCAGT 58.924 38.462 0.00 0.00 0.00 3.41
114 115 7.015682 AGTGGGTATATAGGATTTGAGTCAGTG 59.984 40.741 0.00 0.00 0.00 3.66
115 116 6.270000 TGGGTATATAGGATTTGAGTCAGTGG 59.730 42.308 0.00 0.00 0.00 4.00
116 117 6.295916 GGGTATATAGGATTTGAGTCAGTGGG 60.296 46.154 0.00 0.00 0.00 4.61
117 118 6.497259 GGTATATAGGATTTGAGTCAGTGGGA 59.503 42.308 0.00 0.00 0.00 4.37
118 119 7.181125 GGTATATAGGATTTGAGTCAGTGGGAT 59.819 40.741 0.00 0.00 0.00 3.85
119 120 3.922171 AGGATTTGAGTCAGTGGGATC 57.078 47.619 0.00 0.00 0.00 3.36
120 121 3.184628 AGGATTTGAGTCAGTGGGATCA 58.815 45.455 0.00 0.00 0.00 2.92
121 122 3.588842 AGGATTTGAGTCAGTGGGATCAA 59.411 43.478 0.00 0.00 0.00 2.57
122 123 3.691609 GGATTTGAGTCAGTGGGATCAAC 59.308 47.826 0.00 0.00 31.72 3.18
123 124 4.566488 GGATTTGAGTCAGTGGGATCAACT 60.566 45.833 0.00 0.00 31.72 3.16
124 125 5.338381 GGATTTGAGTCAGTGGGATCAACTA 60.338 44.000 0.00 0.00 31.72 2.24
125 126 5.762179 TTTGAGTCAGTGGGATCAACTAT 57.238 39.130 0.00 0.00 31.72 2.12
126 127 5.762179 TTGAGTCAGTGGGATCAACTATT 57.238 39.130 0.00 0.00 0.00 1.73
127 128 5.762179 TGAGTCAGTGGGATCAACTATTT 57.238 39.130 0.00 0.00 0.00 1.40
128 129 6.867519 TGAGTCAGTGGGATCAACTATTTA 57.132 37.500 0.00 0.00 0.00 1.40
129 130 7.252612 TGAGTCAGTGGGATCAACTATTTAA 57.747 36.000 0.00 0.00 0.00 1.52
130 131 7.685481 TGAGTCAGTGGGATCAACTATTTAAA 58.315 34.615 0.00 0.00 0.00 1.52
131 132 8.328758 TGAGTCAGTGGGATCAACTATTTAAAT 58.671 33.333 5.89 5.89 0.00 1.40
132 133 9.832445 GAGTCAGTGGGATCAACTATTTAAATA 57.168 33.333 7.66 7.66 0.00 1.40
133 134 9.614792 AGTCAGTGGGATCAACTATTTAAATAC 57.385 33.333 3.71 0.00 0.00 1.89
134 135 9.614792 GTCAGTGGGATCAACTATTTAAATACT 57.385 33.333 3.71 0.00 0.00 2.12
154 155 5.317733 ACTATAGATAGGATGCGAGTTGC 57.682 43.478 6.78 0.00 38.23 4.17
155 156 4.142578 ACTATAGATAGGATGCGAGTTGCG 60.143 45.833 6.78 0.00 39.62 4.85
156 157 6.318266 ACTATAGATAGGATGCGAGTTGCGA 61.318 44.000 6.78 0.00 39.62 5.10
157 158 8.269095 ACTATAGATAGGATGCGAGTTGCGAC 62.269 46.154 6.78 0.00 39.62 5.19
200 201 2.145536 CAAAGAAAACAAGCCATGGCC 58.854 47.619 33.14 15.76 43.17 5.36
201 202 0.686789 AAGAAAACAAGCCATGGCCC 59.313 50.000 33.14 13.08 43.17 5.80
202 203 1.194121 AGAAAACAAGCCATGGCCCC 61.194 55.000 33.14 13.77 43.17 5.80
203 204 2.505635 GAAAACAAGCCATGGCCCCG 62.506 60.000 33.14 22.83 43.17 5.73
204 205 3.826265 AAACAAGCCATGGCCCCGT 62.826 57.895 33.14 23.50 43.17 5.28
205 206 3.826265 AACAAGCCATGGCCCCGTT 62.826 57.895 33.14 27.44 43.17 4.44
206 207 3.451894 CAAGCCATGGCCCCGTTC 61.452 66.667 33.14 3.90 43.17 3.95
210 211 4.418328 CCATGGCCCCGTTCGGAA 62.418 66.667 13.08 0.00 0.00 4.30
211 212 2.824041 CATGGCCCCGTTCGGAAG 60.824 66.667 13.08 4.98 0.00 3.46
212 213 3.327404 ATGGCCCCGTTCGGAAGT 61.327 61.111 13.08 0.00 0.00 3.01
213 214 3.622060 ATGGCCCCGTTCGGAAGTG 62.622 63.158 13.08 0.00 0.00 3.16
214 215 4.011517 GGCCCCGTTCGGAAGTGA 62.012 66.667 13.08 0.00 0.00 3.41
215 216 2.267961 GCCCCGTTCGGAAGTGAT 59.732 61.111 13.08 0.00 0.00 3.06
216 217 1.814169 GCCCCGTTCGGAAGTGATC 60.814 63.158 13.08 0.00 0.00 2.92
217 218 1.153429 CCCCGTTCGGAAGTGATCC 60.153 63.158 13.08 0.00 45.57 3.36
224 225 2.107141 GGAAGTGATCCGGCTCCG 59.893 66.667 2.20 0.48 38.79 4.63
225 226 2.722201 GGAAGTGATCCGGCTCCGT 61.722 63.158 2.20 0.00 38.79 4.69
226 227 1.519455 GAAGTGATCCGGCTCCGTG 60.519 63.158 2.20 0.00 37.81 4.94
227 228 3.665675 AAGTGATCCGGCTCCGTGC 62.666 63.158 2.20 0.00 41.94 5.34
228 229 4.148825 GTGATCCGGCTCCGTGCT 62.149 66.667 2.20 0.00 42.39 4.40
229 230 3.390521 TGATCCGGCTCCGTGCTT 61.391 61.111 2.20 0.00 42.39 3.91
230 231 2.586357 GATCCGGCTCCGTGCTTC 60.586 66.667 7.59 0.00 42.39 3.86
231 232 3.077556 ATCCGGCTCCGTGCTTCT 61.078 61.111 7.59 0.00 42.39 2.85
232 233 2.962697 GATCCGGCTCCGTGCTTCTC 62.963 65.000 7.59 0.00 42.39 2.87
233 234 3.764466 CCGGCTCCGTGCTTCTCT 61.764 66.667 7.59 0.00 42.39 3.10
234 235 2.507992 CGGCTCCGTGCTTCTCTG 60.508 66.667 0.00 0.00 42.39 3.35
235 236 2.125350 GGCTCCGTGCTTCTCTGG 60.125 66.667 0.00 0.00 42.39 3.86
236 237 2.650116 GGCTCCGTGCTTCTCTGGA 61.650 63.158 0.00 0.00 42.39 3.86
237 238 1.293498 GCTCCGTGCTTCTCTGGAA 59.707 57.895 0.00 0.00 38.95 3.53
244 245 4.198625 CTTCTCTGGAAGCTGGCG 57.801 61.111 0.00 0.00 41.80 5.69
245 246 1.593787 CTTCTCTGGAAGCTGGCGA 59.406 57.895 0.00 0.00 41.80 5.54
246 247 0.459934 CTTCTCTGGAAGCTGGCGAG 60.460 60.000 0.00 0.00 41.80 5.03
247 248 1.892819 TTCTCTGGAAGCTGGCGAGG 61.893 60.000 0.00 0.00 0.00 4.63
248 249 2.283894 TCTGGAAGCTGGCGAGGA 60.284 61.111 0.00 0.00 0.00 3.71
249 250 2.186384 CTGGAAGCTGGCGAGGAG 59.814 66.667 0.00 0.00 0.00 3.69
252 253 2.511145 GAAGCTGGCGAGGAGCTG 60.511 66.667 0.00 0.00 46.32 4.24
253 254 4.093291 AAGCTGGCGAGGAGCTGG 62.093 66.667 0.00 0.00 46.32 4.85
272 273 2.278596 CGAACGCGTCGGATCCAT 60.279 61.111 14.44 0.00 46.45 3.41
273 274 2.576893 CGAACGCGTCGGATCCATG 61.577 63.158 14.44 5.84 46.45 3.66
274 275 2.202878 AACGCGTCGGATCCATGG 60.203 61.111 14.44 4.97 0.00 3.66
275 276 2.622903 GAACGCGTCGGATCCATGGA 62.623 60.000 18.88 18.88 0.00 3.41
276 277 2.355126 CGCGTCGGATCCATGGAG 60.355 66.667 21.33 6.88 0.00 3.86
277 278 2.663188 GCGTCGGATCCATGGAGC 60.663 66.667 22.09 22.09 0.00 4.70
278 279 2.029666 CGTCGGATCCATGGAGCC 59.970 66.667 34.96 34.96 46.32 4.70
284 285 3.018479 GATCCATGGAGCCAGCTTC 57.982 57.895 19.66 6.11 0.00 3.86
285 286 0.182061 GATCCATGGAGCCAGCTTCA 59.818 55.000 19.66 2.43 35.79 3.02
286 287 0.183014 ATCCATGGAGCCAGCTTCAG 59.817 55.000 21.33 0.00 34.64 3.02
287 288 0.911045 TCCATGGAGCCAGCTTCAGA 60.911 55.000 11.44 0.00 34.64 3.27
288 289 0.034767 CCATGGAGCCAGCTTCAGAA 60.035 55.000 5.56 0.00 34.64 3.02
289 290 1.380524 CATGGAGCCAGCTTCAGAAG 58.619 55.000 6.78 5.72 34.64 2.85
297 298 3.435186 GCTTCAGAAGCGGTGGCC 61.435 66.667 19.41 0.00 45.74 5.36
298 299 2.348998 CTTCAGAAGCGGTGGCCT 59.651 61.111 3.32 0.00 41.24 5.19
299 300 1.743252 CTTCAGAAGCGGTGGCCTC 60.743 63.158 3.32 0.00 41.24 4.70
300 301 3.589654 TTCAGAAGCGGTGGCCTCG 62.590 63.158 3.32 9.66 41.24 4.63
312 313 3.788766 GCCTCGCGACGTGCAAAT 61.789 61.111 3.71 0.00 46.97 2.32
313 314 2.395690 CCTCGCGACGTGCAAATC 59.604 61.111 3.71 0.00 46.97 2.17
314 315 2.395690 CTCGCGACGTGCAAATCC 59.604 61.111 3.71 0.00 46.97 3.01
315 316 3.406060 CTCGCGACGTGCAAATCCG 62.406 63.158 3.71 0.00 46.97 4.18
316 317 3.773630 CGCGACGTGCAAATCCGT 61.774 61.111 0.00 0.00 46.97 4.69
317 318 2.202171 GCGACGTGCAAATCCGTG 60.202 61.111 4.69 0.00 45.45 4.94
318 319 2.474266 CGACGTGCAAATCCGTGG 59.526 61.111 4.69 0.00 37.44 4.94
319 320 2.024868 CGACGTGCAAATCCGTGGA 61.025 57.895 4.69 0.00 37.44 4.02
320 321 1.787847 GACGTGCAAATCCGTGGAG 59.212 57.895 4.69 0.00 37.44 3.86
321 322 2.240612 GACGTGCAAATCCGTGGAGC 62.241 60.000 4.69 0.00 37.44 4.70
322 323 2.480555 GTGCAAATCCGTGGAGCG 59.519 61.111 0.00 0.00 40.95 5.03
323 324 2.032634 GTGCAAATCCGTGGAGCGA 61.033 57.895 0.00 0.00 44.77 4.93
324 325 1.741401 TGCAAATCCGTGGAGCGAG 60.741 57.895 0.00 0.00 44.77 5.03
325 326 2.464459 GCAAATCCGTGGAGCGAGG 61.464 63.158 0.00 0.00 44.77 4.63
326 327 1.815421 CAAATCCGTGGAGCGAGGG 60.815 63.158 0.00 0.00 44.77 4.30
327 328 1.987855 AAATCCGTGGAGCGAGGGA 60.988 57.895 0.00 0.00 44.77 4.20
328 329 1.550130 AAATCCGTGGAGCGAGGGAA 61.550 55.000 0.00 0.00 44.77 3.97
329 330 1.961180 AATCCGTGGAGCGAGGGAAG 61.961 60.000 0.00 0.00 44.77 3.46
330 331 4.821589 CCGTGGAGCGAGGGAAGC 62.822 72.222 0.00 0.00 44.77 3.86
331 332 4.821589 CGTGGAGCGAGGGAAGCC 62.822 72.222 0.00 0.00 44.77 4.35
332 333 4.475135 GTGGAGCGAGGGAAGCCC 62.475 72.222 0.00 0.00 45.90 5.19
344 345 2.281484 AAGCCCAGCTTCGCGAAA 60.281 55.556 23.54 6.90 46.77 3.46
345 346 1.675641 AAGCCCAGCTTCGCGAAAT 60.676 52.632 23.54 11.70 46.77 2.17
346 347 0.392461 AAGCCCAGCTTCGCGAAATA 60.392 50.000 23.54 0.00 46.77 1.40
347 348 0.179045 AGCCCAGCTTCGCGAAATAT 60.179 50.000 23.54 8.62 33.89 1.28
348 349 1.070134 AGCCCAGCTTCGCGAAATATA 59.930 47.619 23.54 0.00 33.89 0.86
349 350 1.461127 GCCCAGCTTCGCGAAATATAG 59.539 52.381 23.54 11.79 0.00 1.31
350 351 2.866460 GCCCAGCTTCGCGAAATATAGA 60.866 50.000 23.54 0.00 0.00 1.98
351 352 3.390135 CCCAGCTTCGCGAAATATAGAA 58.610 45.455 23.54 0.00 0.00 2.10
352 353 3.430218 CCCAGCTTCGCGAAATATAGAAG 59.570 47.826 23.54 9.44 41.99 2.85
353 354 4.051922 CCAGCTTCGCGAAATATAGAAGT 58.948 43.478 23.54 0.00 41.36 3.01
354 355 5.220381 CCAGCTTCGCGAAATATAGAAGTA 58.780 41.667 23.54 0.00 41.36 2.24
355 356 5.343593 CCAGCTTCGCGAAATATAGAAGTAG 59.656 44.000 23.54 7.33 41.36 2.57
356 357 5.343593 CAGCTTCGCGAAATATAGAAGTAGG 59.656 44.000 23.54 7.24 41.36 3.18
357 358 5.241064 AGCTTCGCGAAATATAGAAGTAGGA 59.759 40.000 23.54 0.00 41.36 2.94
358 359 5.569823 GCTTCGCGAAATATAGAAGTAGGAG 59.430 44.000 23.54 5.97 41.36 3.69
359 360 6.630444 TTCGCGAAATATAGAAGTAGGAGT 57.370 37.500 21.14 0.00 0.00 3.85
360 361 6.630444 TCGCGAAATATAGAAGTAGGAGTT 57.370 37.500 6.20 0.00 0.00 3.01
361 362 6.666417 TCGCGAAATATAGAAGTAGGAGTTC 58.334 40.000 6.20 0.00 0.00 3.01
362 363 5.564504 CGCGAAATATAGAAGTAGGAGTTCG 59.435 44.000 0.00 0.00 38.59 3.95
363 364 6.437094 GCGAAATATAGAAGTAGGAGTTCGT 58.563 40.000 0.00 0.00 38.03 3.85
364 365 6.916932 GCGAAATATAGAAGTAGGAGTTCGTT 59.083 38.462 0.00 0.00 38.03 3.85
365 366 7.113264 GCGAAATATAGAAGTAGGAGTTCGTTC 59.887 40.741 0.00 0.00 38.03 3.95
366 367 8.127327 CGAAATATAGAAGTAGGAGTTCGTTCA 58.873 37.037 0.00 0.00 32.91 3.18
367 368 9.798994 GAAATATAGAAGTAGGAGTTCGTTCAA 57.201 33.333 0.00 0.00 32.91 2.69
372 373 7.886405 AGAAGTAGGAGTTCGTTCAAATTAC 57.114 36.000 0.00 0.00 32.91 1.89
373 374 7.439381 AGAAGTAGGAGTTCGTTCAAATTACA 58.561 34.615 0.00 0.00 32.91 2.41
374 375 7.599245 AGAAGTAGGAGTTCGTTCAAATTACAG 59.401 37.037 0.00 0.00 32.91 2.74
375 376 5.638234 AGTAGGAGTTCGTTCAAATTACAGC 59.362 40.000 0.00 0.00 0.00 4.40
376 377 3.751698 AGGAGTTCGTTCAAATTACAGCC 59.248 43.478 0.00 0.00 0.00 4.85
377 378 3.119955 GGAGTTCGTTCAAATTACAGCCC 60.120 47.826 0.00 0.00 0.00 5.19
378 379 2.482721 AGTTCGTTCAAATTACAGCCCG 59.517 45.455 0.00 0.00 0.00 6.13
379 380 0.800012 TCGTTCAAATTACAGCCCGC 59.200 50.000 0.00 0.00 0.00 6.13
380 381 0.802494 CGTTCAAATTACAGCCCGCT 59.198 50.000 0.00 0.00 0.00 5.52
404 405 4.090057 GCGAAGTGCCTGCCGAAC 62.090 66.667 0.00 0.00 37.76 3.95
405 406 3.423154 CGAAGTGCCTGCCGAACC 61.423 66.667 0.00 0.00 0.00 3.62
406 407 3.423154 GAAGTGCCTGCCGAACCG 61.423 66.667 0.00 0.00 0.00 4.44
407 408 4.250305 AAGTGCCTGCCGAACCGT 62.250 61.111 0.00 0.00 0.00 4.83
408 409 3.767630 AAGTGCCTGCCGAACCGTT 62.768 57.895 0.00 0.00 0.00 4.44
409 410 3.284449 GTGCCTGCCGAACCGTTT 61.284 61.111 0.00 0.00 0.00 3.60
410 411 2.517402 TGCCTGCCGAACCGTTTT 60.517 55.556 0.00 0.00 0.00 2.43
411 412 2.254350 GCCTGCCGAACCGTTTTC 59.746 61.111 0.00 0.00 0.00 2.29
412 413 2.951458 CCTGCCGAACCGTTTTCC 59.049 61.111 0.00 0.00 0.00 3.13
413 414 1.599797 CCTGCCGAACCGTTTTCCT 60.600 57.895 0.00 0.00 0.00 3.36
414 415 1.574702 CCTGCCGAACCGTTTTCCTC 61.575 60.000 0.00 0.00 0.00 3.71
415 416 0.602905 CTGCCGAACCGTTTTCCTCT 60.603 55.000 0.00 0.00 0.00 3.69
416 417 0.179040 TGCCGAACCGTTTTCCTCTT 60.179 50.000 0.00 0.00 0.00 2.85
417 418 0.949397 GCCGAACCGTTTTCCTCTTT 59.051 50.000 0.00 0.00 0.00 2.52
418 419 1.334689 GCCGAACCGTTTTCCTCTTTG 60.335 52.381 0.00 0.00 0.00 2.77
419 420 1.944709 CCGAACCGTTTTCCTCTTTGT 59.055 47.619 0.00 0.00 0.00 2.83
420 421 2.356695 CCGAACCGTTTTCCTCTTTGTT 59.643 45.455 0.00 0.00 0.00 2.83
421 422 3.547413 CCGAACCGTTTTCCTCTTTGTTC 60.547 47.826 0.00 0.00 0.00 3.18
422 423 3.614588 GAACCGTTTTCCTCTTTGTTCG 58.385 45.455 0.00 0.00 0.00 3.95
423 424 1.332686 ACCGTTTTCCTCTTTGTTCGC 59.667 47.619 0.00 0.00 0.00 4.70
424 425 1.332375 CCGTTTTCCTCTTTGTTCGCA 59.668 47.619 0.00 0.00 0.00 5.10
425 426 2.602217 CCGTTTTCCTCTTTGTTCGCAG 60.602 50.000 0.00 0.00 0.00 5.18
426 427 2.385315 GTTTTCCTCTTTGTTCGCAGC 58.615 47.619 0.00 0.00 0.00 5.25
427 428 0.951558 TTTCCTCTTTGTTCGCAGCC 59.048 50.000 0.00 0.00 0.00 4.85
428 429 0.889186 TTCCTCTTTGTTCGCAGCCC 60.889 55.000 0.00 0.00 0.00 5.19
429 430 1.600636 CCTCTTTGTTCGCAGCCCA 60.601 57.895 0.00 0.00 0.00 5.36
430 431 1.580845 CCTCTTTGTTCGCAGCCCAG 61.581 60.000 0.00 0.00 0.00 4.45
431 432 2.192608 CTCTTTGTTCGCAGCCCAGC 62.193 60.000 0.00 0.00 0.00 4.85
432 433 3.273080 CTTTGTTCGCAGCCCAGCC 62.273 63.158 0.00 0.00 0.00 4.85
450 451 1.880646 GCCCAGTTCGCCTTCTTTACA 60.881 52.381 0.00 0.00 0.00 2.41
452 453 2.882137 CCCAGTTCGCCTTCTTTACAAA 59.118 45.455 0.00 0.00 0.00 2.83
453 454 3.316868 CCCAGTTCGCCTTCTTTACAAAA 59.683 43.478 0.00 0.00 0.00 2.44
454 455 4.287720 CCAGTTCGCCTTCTTTACAAAAC 58.712 43.478 0.00 0.00 0.00 2.43
456 457 5.237779 CCAGTTCGCCTTCTTTACAAAACTA 59.762 40.000 0.00 0.00 0.00 2.24
459 460 4.638304 TCGCCTTCTTTACAAAACTAGCT 58.362 39.130 0.00 0.00 0.00 3.32
463 464 5.383130 CCTTCTTTACAAAACTAGCTTCGC 58.617 41.667 0.00 0.00 0.00 4.70
476 487 1.698165 GCTTCGCCCAAAGCTAAAAC 58.302 50.000 6.01 0.00 46.51 2.43
485 496 2.231235 CCAAAGCTAAAACGGAAGGCAT 59.769 45.455 0.00 0.00 0.00 4.40
548 563 1.078848 GCATCTCCAACAGTCGCCT 60.079 57.895 0.00 0.00 0.00 5.52
763 920 2.225496 ACACACATCTCTTCCCCTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
1129 1321 4.671590 TCGTCGCCCAGGAGGACA 62.672 66.667 9.68 0.00 38.24 4.02
1331 1523 0.039888 TTCACGTCGAACGATGAGCA 60.040 50.000 20.59 3.19 46.05 4.26
1711 1930 0.809241 CGGCTGTTGGAGATGCTCTC 60.809 60.000 5.01 5.01 42.66 3.20
1716 1935 1.829849 TGTTGGAGATGCTCTCAGGAG 59.170 52.381 13.06 0.00 45.12 3.69
1717 1936 2.106566 GTTGGAGATGCTCTCAGGAGA 58.893 52.381 13.06 0.00 45.12 3.71
1718 1937 1.774110 TGGAGATGCTCTCAGGAGAC 58.226 55.000 13.06 0.00 45.12 3.36
1719 1938 1.039856 GGAGATGCTCTCAGGAGACC 58.960 60.000 13.06 0.00 45.12 3.85
1720 1939 1.687682 GGAGATGCTCTCAGGAGACCA 60.688 57.143 13.06 0.00 45.12 4.02
1721 1940 1.682854 GAGATGCTCTCAGGAGACCAG 59.317 57.143 7.93 0.00 42.90 4.00
1722 1941 0.104671 GATGCTCTCAGGAGACCAGC 59.895 60.000 0.00 0.00 41.86 4.85
1723 1942 0.616964 ATGCTCTCAGGAGACCAGCA 60.617 55.000 12.30 12.30 41.86 4.41
1724 1943 1.217779 GCTCTCAGGAGACCAGCAC 59.782 63.158 0.00 0.00 41.86 4.40
1725 1944 1.510383 CTCTCAGGAGACCAGCACG 59.490 63.158 0.00 0.00 41.86 5.34
1726 1945 2.125753 CTCAGGAGACCAGCACGC 60.126 66.667 0.00 0.00 0.00 5.34
1727 1946 2.917227 TCAGGAGACCAGCACGCA 60.917 61.111 0.00 0.00 0.00 5.24
1728 1947 2.740055 CAGGAGACCAGCACGCAC 60.740 66.667 0.00 0.00 0.00 5.34
1729 1948 4.363990 AGGAGACCAGCACGCACG 62.364 66.667 0.00 0.00 0.00 5.34
1741 1960 3.248171 CGCACGCGTTCTAGAGCC 61.248 66.667 10.22 0.00 34.35 4.70
1742 1961 2.182030 GCACGCGTTCTAGAGCCT 59.818 61.111 10.22 0.00 0.00 4.58
1743 1962 1.432251 GCACGCGTTCTAGAGCCTA 59.568 57.895 10.22 0.00 0.00 3.93
1744 1963 0.592754 GCACGCGTTCTAGAGCCTAG 60.593 60.000 10.22 0.00 0.00 3.02
1745 1964 0.592754 CACGCGTTCTAGAGCCTAGC 60.593 60.000 10.22 0.00 0.00 3.42
1746 1965 0.748729 ACGCGTTCTAGAGCCTAGCT 60.749 55.000 5.58 0.00 43.88 3.32
1747 1966 0.317436 CGCGTTCTAGAGCCTAGCTG 60.317 60.000 0.00 0.00 39.88 4.24
1748 1967 0.031449 GCGTTCTAGAGCCTAGCTGG 59.969 60.000 0.00 0.00 39.88 4.85
1749 1968 1.681538 CGTTCTAGAGCCTAGCTGGA 58.318 55.000 0.00 0.00 39.88 3.86
1750 1969 2.025155 CGTTCTAGAGCCTAGCTGGAA 58.975 52.381 0.00 0.00 39.88 3.53
1751 1970 2.427453 CGTTCTAGAGCCTAGCTGGAAA 59.573 50.000 0.00 0.00 39.88 3.13
1752 1971 3.119101 CGTTCTAGAGCCTAGCTGGAAAA 60.119 47.826 0.00 0.00 39.88 2.29
1753 1972 4.185394 GTTCTAGAGCCTAGCTGGAAAAC 58.815 47.826 0.00 1.09 39.88 2.43
1754 1973 3.714144 TCTAGAGCCTAGCTGGAAAACT 58.286 45.455 0.00 0.00 39.88 2.66
1755 1974 4.097418 TCTAGAGCCTAGCTGGAAAACTT 58.903 43.478 0.00 0.00 39.88 2.66
1756 1975 3.064900 AGAGCCTAGCTGGAAAACTTG 57.935 47.619 0.00 0.00 39.88 3.16
1757 1976 2.639839 AGAGCCTAGCTGGAAAACTTGA 59.360 45.455 0.00 0.00 39.88 3.02
1758 1977 3.265479 AGAGCCTAGCTGGAAAACTTGAT 59.735 43.478 0.00 0.00 39.88 2.57
1759 1978 3.615155 AGCCTAGCTGGAAAACTTGATC 58.385 45.455 0.00 0.00 37.57 2.92
1760 1979 2.685388 GCCTAGCTGGAAAACTTGATCC 59.315 50.000 0.00 0.00 38.35 3.36
1761 1980 3.623453 GCCTAGCTGGAAAACTTGATCCT 60.623 47.826 0.00 0.00 38.35 3.24
1762 1981 3.944015 CCTAGCTGGAAAACTTGATCCTG 59.056 47.826 0.00 0.00 38.35 3.86
1763 1982 3.795688 AGCTGGAAAACTTGATCCTGA 57.204 42.857 3.27 0.00 36.95 3.86
1764 1983 4.313020 AGCTGGAAAACTTGATCCTGAT 57.687 40.909 3.27 0.00 36.95 2.90
1765 1984 4.268359 AGCTGGAAAACTTGATCCTGATC 58.732 43.478 0.06 0.06 36.95 2.92
1766 1985 4.012374 GCTGGAAAACTTGATCCTGATCA 58.988 43.478 5.74 5.74 45.30 2.92
1767 1986 4.643784 GCTGGAAAACTTGATCCTGATCAT 59.356 41.667 10.44 0.00 46.12 2.45
1768 1987 5.221009 GCTGGAAAACTTGATCCTGATCATC 60.221 44.000 10.44 5.18 46.12 2.92
1769 1988 6.070951 TGGAAAACTTGATCCTGATCATCT 57.929 37.500 10.44 0.00 46.12 2.90
1770 1989 6.118170 TGGAAAACTTGATCCTGATCATCTC 58.882 40.000 10.44 4.10 46.12 2.75
1771 1990 6.118170 GGAAAACTTGATCCTGATCATCTCA 58.882 40.000 10.44 0.00 46.12 3.27
1772 1991 6.771749 GGAAAACTTGATCCTGATCATCTCAT 59.228 38.462 10.44 0.00 46.12 2.90
1773 1992 7.041235 GGAAAACTTGATCCTGATCATCTCATC 60.041 40.741 10.44 7.23 46.12 2.92
1774 1993 5.486735 ACTTGATCCTGATCATCTCATCC 57.513 43.478 10.44 0.00 46.12 3.51
1775 1994 4.286549 ACTTGATCCTGATCATCTCATCCC 59.713 45.833 10.44 0.00 46.12 3.85
1776 1995 3.865571 TGATCCTGATCATCTCATCCCA 58.134 45.455 5.74 0.00 42.42 4.37
1777 1996 4.436079 TGATCCTGATCATCTCATCCCAT 58.564 43.478 5.74 0.00 42.42 4.00
1778 1997 4.470304 TGATCCTGATCATCTCATCCCATC 59.530 45.833 5.74 0.00 42.42 3.51
1779 1998 2.830321 TCCTGATCATCTCATCCCATCG 59.170 50.000 0.00 0.00 32.10 3.84
1780 1999 2.830321 CCTGATCATCTCATCCCATCGA 59.170 50.000 0.00 0.00 32.10 3.59
1781 2000 3.451540 CCTGATCATCTCATCCCATCGAT 59.548 47.826 0.00 0.00 32.10 3.59
1782 2001 4.441773 CCTGATCATCTCATCCCATCGATC 60.442 50.000 0.00 0.00 32.10 3.69
1783 2002 3.129988 TGATCATCTCATCCCATCGATCG 59.870 47.826 9.36 9.36 32.36 3.69
1784 2003 1.203287 TCATCTCATCCCATCGATCGC 59.797 52.381 11.09 0.00 0.00 4.58
1785 2004 1.067354 CATCTCATCCCATCGATCGCA 60.067 52.381 11.09 0.00 0.00 5.10
1786 2005 0.315251 TCTCATCCCATCGATCGCAC 59.685 55.000 11.09 0.00 0.00 5.34
1787 2006 1.005804 CTCATCCCATCGATCGCACG 61.006 60.000 11.09 0.45 0.00 5.34
1788 2007 2.356313 ATCCCATCGATCGCACGC 60.356 61.111 11.09 0.00 0.00 5.34
1789 2008 4.923710 TCCCATCGATCGCACGCG 62.924 66.667 11.09 3.53 41.35 6.01
1792 2011 3.682315 CATCGATCGCACGCGGTC 61.682 66.667 14.54 14.54 45.14 4.79
1801 2020 3.345808 CACGCGGTCACCACCAAG 61.346 66.667 12.47 0.00 44.02 3.61
1834 2053 3.545911 CGACGGACGTGGAAAAGG 58.454 61.111 0.53 0.00 37.22 3.11
1835 2054 2.664436 CGACGGACGTGGAAAAGGC 61.664 63.158 0.53 0.00 37.22 4.35
1836 2055 2.663852 ACGGACGTGGAAAAGGCG 60.664 61.111 0.00 0.00 0.00 5.52
1837 2056 3.419759 CGGACGTGGAAAAGGCGG 61.420 66.667 0.00 0.00 0.00 6.13
1838 2057 3.733960 GGACGTGGAAAAGGCGGC 61.734 66.667 0.00 0.00 0.00 6.53
1839 2058 4.084888 GACGTGGAAAAGGCGGCG 62.085 66.667 0.51 0.51 0.00 6.46
1845 2064 3.500642 GAAAAGGCGGCGGCTCTC 61.501 66.667 36.20 28.65 37.50 3.20
1851 2070 4.537433 GCGGCGGCTCTCCTGAAT 62.537 66.667 9.78 0.00 35.83 2.57
1852 2071 2.279784 CGGCGGCTCTCCTGAATC 60.280 66.667 7.61 0.00 0.00 2.52
1853 2072 2.790791 CGGCGGCTCTCCTGAATCT 61.791 63.158 7.61 0.00 0.00 2.40
1854 2073 1.524482 GGCGGCTCTCCTGAATCTT 59.476 57.895 0.00 0.00 0.00 2.40
1855 2074 0.531753 GGCGGCTCTCCTGAATCTTC 60.532 60.000 0.00 0.00 0.00 2.87
1856 2075 0.463620 GCGGCTCTCCTGAATCTTCT 59.536 55.000 0.00 0.00 0.00 2.85
1857 2076 1.805871 GCGGCTCTCCTGAATCTTCTG 60.806 57.143 0.00 0.00 0.00 3.02
1858 2077 1.805871 CGGCTCTCCTGAATCTTCTGC 60.806 57.143 0.00 0.00 0.00 4.26
1859 2078 1.209019 GGCTCTCCTGAATCTTCTGCA 59.791 52.381 0.00 0.00 0.00 4.41
1860 2079 2.158784 GGCTCTCCTGAATCTTCTGCAT 60.159 50.000 0.00 0.00 0.00 3.96
1861 2080 2.873472 GCTCTCCTGAATCTTCTGCATG 59.127 50.000 0.00 0.00 0.00 4.06
1862 2081 3.682155 GCTCTCCTGAATCTTCTGCATGT 60.682 47.826 0.00 0.00 0.00 3.21
1863 2082 4.515361 CTCTCCTGAATCTTCTGCATGTT 58.485 43.478 0.00 0.00 0.00 2.71
1864 2083 4.511527 TCTCCTGAATCTTCTGCATGTTC 58.488 43.478 0.00 0.00 0.00 3.18
1865 2084 3.264947 TCCTGAATCTTCTGCATGTTCG 58.735 45.455 0.00 0.00 0.00 3.95
1866 2085 3.005554 CCTGAATCTTCTGCATGTTCGT 58.994 45.455 0.00 0.00 0.00 3.85
1867 2086 3.181513 CCTGAATCTTCTGCATGTTCGTG 60.182 47.826 0.00 0.00 0.00 4.35
1868 2087 3.402110 TGAATCTTCTGCATGTTCGTGT 58.598 40.909 0.00 0.00 0.00 4.49
1869 2088 3.187022 TGAATCTTCTGCATGTTCGTGTG 59.813 43.478 0.00 0.00 0.00 3.82
1870 2089 1.511850 TCTTCTGCATGTTCGTGTGG 58.488 50.000 0.00 0.00 0.00 4.17
1871 2090 0.110056 CTTCTGCATGTTCGTGTGGC 60.110 55.000 0.00 0.00 0.00 5.01
1872 2091 1.514678 TTCTGCATGTTCGTGTGGCC 61.515 55.000 0.00 0.00 0.00 5.36
1873 2092 2.203266 TGCATGTTCGTGTGGCCA 60.203 55.556 0.00 0.00 0.00 5.36
1874 2093 1.794151 CTGCATGTTCGTGTGGCCAA 61.794 55.000 7.24 0.00 0.00 4.52
1875 2094 1.371635 GCATGTTCGTGTGGCCAAC 60.372 57.895 7.24 7.55 0.00 3.77
1876 2095 1.082169 CATGTTCGTGTGGCCAACG 60.082 57.895 25.17 25.17 42.36 4.10
1877 2096 1.525077 ATGTTCGTGTGGCCAACGT 60.525 52.632 27.78 14.69 41.70 3.99
1878 2097 1.503818 ATGTTCGTGTGGCCAACGTC 61.504 55.000 27.78 23.06 41.70 4.34
1879 2098 2.174969 GTTCGTGTGGCCAACGTCA 61.175 57.895 27.78 18.47 41.70 4.35
1880 2099 1.449778 TTCGTGTGGCCAACGTCAA 60.450 52.632 27.78 18.57 41.70 3.18
1881 2100 0.816018 TTCGTGTGGCCAACGTCAAT 60.816 50.000 27.78 0.00 41.70 2.57
1882 2101 0.816018 TCGTGTGGCCAACGTCAATT 60.816 50.000 27.78 0.00 41.70 2.32
1883 2102 0.385473 CGTGTGGCCAACGTCAATTC 60.385 55.000 23.72 5.04 36.31 2.17
1884 2103 0.385473 GTGTGGCCAACGTCAATTCG 60.385 55.000 7.24 0.00 0.00 3.34
1885 2104 0.816018 TGTGGCCAACGTCAATTCGT 60.816 50.000 7.24 0.00 46.19 3.85
1895 2114 4.755191 ACGTCAATTCGTTGATACATCG 57.245 40.909 0.00 0.00 41.37 3.84
1896 2115 4.417506 ACGTCAATTCGTTGATACATCGA 58.582 39.130 0.00 0.00 41.37 3.59
1897 2116 4.264614 ACGTCAATTCGTTGATACATCGAC 59.735 41.667 0.00 0.15 41.37 4.20
1905 2124 4.740185 GTTGATACATCGACGTCAAGAC 57.260 45.455 17.16 0.64 32.01 3.01
1906 2125 4.163552 GTTGATACATCGACGTCAAGACA 58.836 43.478 17.16 3.27 32.01 3.41
1907 2126 4.428615 TGATACATCGACGTCAAGACAA 57.571 40.909 17.16 0.00 0.00 3.18
1908 2127 4.800784 TGATACATCGACGTCAAGACAAA 58.199 39.130 17.16 0.00 0.00 2.83
1909 2128 5.224135 TGATACATCGACGTCAAGACAAAA 58.776 37.500 17.16 0.00 0.00 2.44
1910 2129 5.692654 TGATACATCGACGTCAAGACAAAAA 59.307 36.000 17.16 0.00 0.00 1.94
1911 2130 6.367695 TGATACATCGACGTCAAGACAAAAAT 59.632 34.615 17.16 0.00 0.00 1.82
1912 2131 5.018695 ACATCGACGTCAAGACAAAAATC 57.981 39.130 17.16 0.00 0.00 2.17
1913 2132 4.750098 ACATCGACGTCAAGACAAAAATCT 59.250 37.500 17.16 0.00 0.00 2.40
1914 2133 4.966850 TCGACGTCAAGACAAAAATCTC 57.033 40.909 17.16 0.00 0.00 2.75
1915 2134 3.739300 TCGACGTCAAGACAAAAATCTCC 59.261 43.478 17.16 0.00 0.00 3.71
1916 2135 3.493129 CGACGTCAAGACAAAAATCTCCA 59.507 43.478 17.16 0.00 0.00 3.86
1917 2136 4.376413 CGACGTCAAGACAAAAATCTCCAG 60.376 45.833 17.16 0.00 0.00 3.86
1918 2137 3.815401 ACGTCAAGACAAAAATCTCCAGG 59.185 43.478 0.72 0.00 0.00 4.45
1919 2138 4.065088 CGTCAAGACAAAAATCTCCAGGA 58.935 43.478 0.72 0.00 0.00 3.86
1920 2139 4.153117 CGTCAAGACAAAAATCTCCAGGAG 59.847 45.833 10.70 10.70 0.00 3.69
1921 2140 4.074970 TCAAGACAAAAATCTCCAGGAGC 58.925 43.478 12.26 0.00 0.00 4.70
1922 2141 3.078891 AGACAAAAATCTCCAGGAGCC 57.921 47.619 12.26 0.00 0.00 4.70
1923 2142 2.376518 AGACAAAAATCTCCAGGAGCCA 59.623 45.455 12.26 0.00 0.00 4.75
1924 2143 3.011032 AGACAAAAATCTCCAGGAGCCAT 59.989 43.478 12.26 0.00 0.00 4.40
1925 2144 3.094572 ACAAAAATCTCCAGGAGCCATG 58.905 45.455 12.26 8.50 0.00 3.66
1926 2145 3.245371 ACAAAAATCTCCAGGAGCCATGA 60.245 43.478 12.26 0.00 0.00 3.07
1927 2146 2.725221 AAATCTCCAGGAGCCATGAC 57.275 50.000 12.26 0.00 0.00 3.06
1928 2147 1.890552 AATCTCCAGGAGCCATGACT 58.109 50.000 12.26 0.00 0.00 3.41
1929 2148 2.783379 ATCTCCAGGAGCCATGACTA 57.217 50.000 12.26 0.00 0.00 2.59
1930 2149 2.079170 TCTCCAGGAGCCATGACTAG 57.921 55.000 12.26 0.00 0.00 2.57
1931 2150 1.047002 CTCCAGGAGCCATGACTAGG 58.953 60.000 2.60 0.00 0.00 3.02
1932 2151 0.636647 TCCAGGAGCCATGACTAGGA 59.363 55.000 0.00 0.00 0.00 2.94
1933 2152 1.047002 CCAGGAGCCATGACTAGGAG 58.953 60.000 0.00 0.00 0.00 3.69
1934 2153 1.047002 CAGGAGCCATGACTAGGAGG 58.953 60.000 0.00 0.00 0.00 4.30
1935 2154 0.937441 AGGAGCCATGACTAGGAGGA 59.063 55.000 0.00 0.00 0.00 3.71
1936 2155 1.133199 AGGAGCCATGACTAGGAGGAG 60.133 57.143 0.00 0.00 0.00 3.69
1937 2156 1.133325 GGAGCCATGACTAGGAGGAGA 60.133 57.143 0.00 0.00 0.00 3.71
1938 2157 1.960689 GAGCCATGACTAGGAGGAGAC 59.039 57.143 0.00 0.00 0.00 3.36
1939 2158 1.044611 GCCATGACTAGGAGGAGACC 58.955 60.000 0.00 0.00 0.00 3.85
1940 2159 1.323412 CCATGACTAGGAGGAGACCG 58.677 60.000 0.00 0.00 34.73 4.79
1941 2160 1.133761 CCATGACTAGGAGGAGACCGA 60.134 57.143 0.00 0.00 34.73 4.69
1942 2161 2.226330 CATGACTAGGAGGAGACCGAG 58.774 57.143 0.00 0.00 38.36 4.63
1943 2162 0.107116 TGACTAGGAGGAGACCGAGC 60.107 60.000 0.00 0.00 36.39 5.03
1944 2163 0.107116 GACTAGGAGGAGACCGAGCA 60.107 60.000 0.00 0.00 36.39 4.26
1945 2164 0.394625 ACTAGGAGGAGACCGAGCAC 60.395 60.000 0.00 0.00 36.39 4.40
1946 2165 1.440938 CTAGGAGGAGACCGAGCACG 61.441 65.000 0.00 0.00 39.43 5.34
1947 2166 4.500116 GGAGGAGACCGAGCACGC 62.500 72.222 0.00 0.00 38.29 5.34
1948 2167 4.838486 GAGGAGACCGAGCACGCG 62.838 72.222 3.53 3.53 38.29 6.01
1951 2170 4.104417 GAGACCGAGCACGCGTCT 62.104 66.667 20.89 20.89 45.23 4.18
1952 2171 3.612371 GAGACCGAGCACGCGTCTT 62.612 63.158 21.38 0.00 43.88 3.01
1953 2172 3.470567 GACCGAGCACGCGTCTTG 61.471 66.667 9.86 13.44 37.04 3.02
1955 2174 4.717629 CCGAGCACGCGTCTTGGA 62.718 66.667 27.48 0.00 37.30 3.53
1956 2175 3.470567 CGAGCACGCGTCTTGGAC 61.471 66.667 9.86 0.00 0.00 4.02
1965 2184 2.804090 GTCTTGGACGTCGCCGAC 60.804 66.667 7.29 7.29 37.88 4.79
1966 2185 3.289062 TCTTGGACGTCGCCGACA 61.289 61.111 18.40 0.00 37.88 4.35
1967 2186 2.355363 CTTGGACGTCGCCGACAA 60.355 61.111 18.40 6.74 37.88 3.18
1968 2187 2.355363 TTGGACGTCGCCGACAAG 60.355 61.111 18.40 4.24 37.88 3.16
1970 2189 4.719369 GGACGTCGCCGACAAGCT 62.719 66.667 18.40 0.00 37.88 3.74
1971 2190 2.733593 GACGTCGCCGACAAGCTT 60.734 61.111 18.40 0.00 37.88 3.74
1972 2191 2.279918 ACGTCGCCGACAAGCTTT 60.280 55.556 18.40 0.00 37.88 3.51
1973 2192 2.211761 GACGTCGCCGACAAGCTTTC 62.212 60.000 18.40 0.00 37.88 2.62
1974 2193 2.861006 GTCGCCGACAAGCTTTCC 59.139 61.111 13.23 0.00 32.09 3.13
1975 2194 2.358247 TCGCCGACAAGCTTTCCC 60.358 61.111 0.00 0.00 0.00 3.97
1976 2195 3.788766 CGCCGACAAGCTTTCCCG 61.789 66.667 0.00 0.14 0.00 5.14
1977 2196 2.668550 GCCGACAAGCTTTCCCGT 60.669 61.111 0.00 0.00 0.00 5.28
1978 2197 2.966309 GCCGACAAGCTTTCCCGTG 61.966 63.158 0.00 0.00 0.00 4.94
1979 2198 2.325082 CCGACAAGCTTTCCCGTGG 61.325 63.158 0.00 0.00 0.00 4.94
1980 2199 2.954611 GACAAGCTTTCCCGTGGC 59.045 61.111 0.00 0.00 0.00 5.01
1981 2200 2.597510 ACAAGCTTTCCCGTGGCC 60.598 61.111 0.00 0.00 0.00 5.36
1982 2201 3.737172 CAAGCTTTCCCGTGGCCG 61.737 66.667 0.00 0.00 0.00 6.13
1992 2211 3.518998 CGTGGCCGGTCTCGATCT 61.519 66.667 25.21 0.00 39.00 2.75
1993 2212 2.184830 CGTGGCCGGTCTCGATCTA 61.185 63.158 25.21 0.00 39.00 1.98
1994 2213 1.516365 CGTGGCCGGTCTCGATCTAT 61.516 60.000 25.21 0.00 39.00 1.98
1995 2214 0.241481 GTGGCCGGTCTCGATCTATC 59.759 60.000 7.97 0.00 39.00 2.08
2008 2227 2.395654 GATCTATCGACGGTCCTTTGC 58.604 52.381 1.91 0.00 0.00 3.68
2009 2228 1.179152 TCTATCGACGGTCCTTTGCA 58.821 50.000 1.91 0.00 0.00 4.08
2010 2229 1.135199 TCTATCGACGGTCCTTTGCAC 60.135 52.381 1.91 0.00 0.00 4.57
2011 2230 0.108520 TATCGACGGTCCTTTGCACC 60.109 55.000 1.91 0.00 0.00 5.01
2016 2235 4.966787 GGTCCTTTGCACCGGCCA 62.967 66.667 0.00 0.00 40.13 5.36
2017 2236 3.670377 GTCCTTTGCACCGGCCAC 61.670 66.667 0.00 0.00 40.13 5.01
2018 2237 4.966787 TCCTTTGCACCGGCCACC 62.967 66.667 0.00 0.00 40.13 4.61
2034 2253 4.404098 CCGTGGCGGGCTTTACCT 62.404 66.667 2.38 0.00 44.15 3.08
2035 2254 2.359478 CGTGGCGGGCTTTACCTT 60.359 61.111 2.38 0.00 39.10 3.50
2036 2255 2.396157 CGTGGCGGGCTTTACCTTC 61.396 63.158 2.38 0.00 39.10 3.46
2037 2256 2.044555 GTGGCGGGCTTTACCTTCC 61.045 63.158 2.38 0.00 39.10 3.46
2038 2257 2.353573 GGCGGGCTTTACCTTCCA 59.646 61.111 0.00 0.00 39.10 3.53
2039 2258 1.076995 GGCGGGCTTTACCTTCCAT 60.077 57.895 0.00 0.00 39.10 3.41
2040 2259 0.181824 GGCGGGCTTTACCTTCCATA 59.818 55.000 0.00 0.00 39.10 2.74
2041 2260 1.202891 GGCGGGCTTTACCTTCCATAT 60.203 52.381 0.00 0.00 39.10 1.78
2042 2261 2.039348 GGCGGGCTTTACCTTCCATATA 59.961 50.000 0.00 0.00 39.10 0.86
2043 2262 3.072211 GCGGGCTTTACCTTCCATATAC 58.928 50.000 0.00 0.00 39.10 1.47
2044 2263 3.323243 CGGGCTTTACCTTCCATATACG 58.677 50.000 0.00 0.00 39.10 3.06
2045 2264 3.006110 CGGGCTTTACCTTCCATATACGA 59.994 47.826 0.00 0.00 39.10 3.43
2046 2265 4.313282 GGGCTTTACCTTCCATATACGAC 58.687 47.826 0.00 0.00 39.10 4.34
2047 2266 4.313282 GGCTTTACCTTCCATATACGACC 58.687 47.826 0.00 0.00 34.51 4.79
2048 2267 4.202284 GGCTTTACCTTCCATATACGACCA 60.202 45.833 0.00 0.00 34.51 4.02
2049 2268 5.512576 GGCTTTACCTTCCATATACGACCAT 60.513 44.000 0.00 0.00 34.51 3.55
2050 2269 5.638234 GCTTTACCTTCCATATACGACCATC 59.362 44.000 0.00 0.00 0.00 3.51
2051 2270 5.733620 TTACCTTCCATATACGACCATCC 57.266 43.478 0.00 0.00 0.00 3.51
2052 2271 2.561419 ACCTTCCATATACGACCATCCG 59.439 50.000 0.00 0.00 0.00 4.18
2053 2272 2.561419 CCTTCCATATACGACCATCCGT 59.439 50.000 0.00 0.00 45.54 4.69
2054 2273 3.575630 CTTCCATATACGACCATCCGTG 58.424 50.000 0.00 0.00 43.27 4.94
2055 2274 2.589720 TCCATATACGACCATCCGTGT 58.410 47.619 0.00 0.00 43.27 4.49
2056 2275 2.295070 TCCATATACGACCATCCGTGTG 59.705 50.000 0.00 0.00 43.27 3.82
2057 2276 2.295070 CCATATACGACCATCCGTGTGA 59.705 50.000 0.00 0.00 43.27 3.58
2058 2277 3.056821 CCATATACGACCATCCGTGTGAT 60.057 47.826 0.00 0.00 43.27 3.06
2059 2278 2.795175 ATACGACCATCCGTGTGATC 57.205 50.000 0.00 0.00 43.27 2.92
2060 2279 0.742505 TACGACCATCCGTGTGATCC 59.257 55.000 0.00 0.00 43.27 3.36
2061 2280 1.254975 ACGACCATCCGTGTGATCCA 61.255 55.000 0.00 0.00 41.70 3.41
2062 2281 0.806102 CGACCATCCGTGTGATCCAC 60.806 60.000 4.71 4.71 40.89 4.02
2063 2282 0.537188 GACCATCCGTGTGATCCACT 59.463 55.000 11.12 0.00 42.20 4.00
2064 2283 1.754803 GACCATCCGTGTGATCCACTA 59.245 52.381 11.12 2.34 42.20 2.74
2065 2284 1.480954 ACCATCCGTGTGATCCACTAC 59.519 52.381 11.12 0.00 42.20 2.73
2066 2285 1.202533 CCATCCGTGTGATCCACTACC 60.203 57.143 11.12 0.00 42.20 3.18
2067 2286 1.120530 ATCCGTGTGATCCACTACCC 58.879 55.000 11.12 0.00 42.20 3.69
2068 2287 0.974010 TCCGTGTGATCCACTACCCC 60.974 60.000 11.12 0.00 42.20 4.95
2069 2288 1.141019 CGTGTGATCCACTACCCCG 59.859 63.158 11.12 0.00 42.20 5.73
2070 2289 1.153429 GTGTGATCCACTACCCCGC 60.153 63.158 6.98 0.00 41.11 6.13
2071 2290 2.363975 TGTGATCCACTACCCCGCC 61.364 63.158 0.00 0.00 35.11 6.13
2072 2291 2.766651 TGATCCACTACCCCGCCC 60.767 66.667 0.00 0.00 0.00 6.13
2073 2292 3.557290 GATCCACTACCCCGCCCC 61.557 72.222 0.00 0.00 0.00 5.80
2107 2326 3.755628 GCCGACCTAGCGTGGACA 61.756 66.667 5.06 0.00 0.00 4.02
2108 2327 2.490217 CCGACCTAGCGTGGACAG 59.510 66.667 5.06 0.00 0.00 3.51
2109 2328 2.202623 CGACCTAGCGTGGACAGC 60.203 66.667 5.06 0.00 0.00 4.40
2110 2329 2.184579 GACCTAGCGTGGACAGCC 59.815 66.667 5.06 0.00 34.64 4.85
2111 2330 3.372554 GACCTAGCGTGGACAGCCC 62.373 68.421 5.06 0.00 34.64 5.19
2112 2331 3.077556 CCTAGCGTGGACAGCCCT 61.078 66.667 0.00 0.00 35.38 5.19
2113 2332 2.185350 CTAGCGTGGACAGCCCTG 59.815 66.667 0.00 0.00 35.38 4.45
2114 2333 4.082523 TAGCGTGGACAGCCCTGC 62.083 66.667 0.00 0.00 37.30 4.85
2143 2362 4.745751 CCCGCCACTACGCCGAAA 62.746 66.667 0.00 0.00 0.00 3.46
2144 2363 3.186047 CCGCCACTACGCCGAAAG 61.186 66.667 0.00 0.00 0.00 2.62
2145 2364 3.849953 CGCCACTACGCCGAAAGC 61.850 66.667 0.00 0.00 38.52 3.51
2146 2365 3.497031 GCCACTACGCCGAAAGCC 61.497 66.667 0.00 0.00 38.78 4.35
2147 2366 3.186047 CCACTACGCCGAAAGCCG 61.186 66.667 0.00 0.00 38.78 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.672983 ACACCTATATTAACATGCACTATGC 57.327 36.000 0.00 0.00 45.29 3.14
37 38 7.793398 TGATGCCACATCATCATGCTATCATG 61.793 42.308 6.17 0.00 45.50 3.07
38 39 4.028993 TGCCACATCATCATGCTATCAT 57.971 40.909 0.00 0.00 32.57 2.45
39 40 3.495434 TGCCACATCATCATGCTATCA 57.505 42.857 0.00 0.00 32.57 2.15
40 41 4.007659 TGATGCCACATCATCATGCTATC 58.992 43.478 6.17 0.00 45.50 2.08
41 42 4.028993 TGATGCCACATCATCATGCTAT 57.971 40.909 6.17 0.00 45.50 2.97
42 43 3.495434 TGATGCCACATCATCATGCTA 57.505 42.857 6.17 0.00 45.50 3.49
43 44 2.358322 TGATGCCACATCATCATGCT 57.642 45.000 6.17 0.00 45.50 3.79
62 63 5.733620 AACTCCAATTCTCAACATGCAAT 57.266 34.783 0.00 0.00 0.00 3.56
63 64 5.769662 ACTAACTCCAATTCTCAACATGCAA 59.230 36.000 0.00 0.00 0.00 4.08
64 65 5.316167 ACTAACTCCAATTCTCAACATGCA 58.684 37.500 0.00 0.00 0.00 3.96
65 66 5.886960 ACTAACTCCAATTCTCAACATGC 57.113 39.130 0.00 0.00 0.00 4.06
66 67 7.065085 CCACTACTAACTCCAATTCTCAACATG 59.935 40.741 0.00 0.00 0.00 3.21
67 68 7.106239 CCACTACTAACTCCAATTCTCAACAT 58.894 38.462 0.00 0.00 0.00 2.71
68 69 6.464222 CCACTACTAACTCCAATTCTCAACA 58.536 40.000 0.00 0.00 0.00 3.33
69 70 5.875359 CCCACTACTAACTCCAATTCTCAAC 59.125 44.000 0.00 0.00 0.00 3.18
70 71 5.546499 ACCCACTACTAACTCCAATTCTCAA 59.454 40.000 0.00 0.00 0.00 3.02
71 72 5.091552 ACCCACTACTAACTCCAATTCTCA 58.908 41.667 0.00 0.00 0.00 3.27
72 73 5.678955 ACCCACTACTAACTCCAATTCTC 57.321 43.478 0.00 0.00 0.00 2.87
75 76 9.322769 CCTATATACCCACTACTAACTCCAATT 57.677 37.037 0.00 0.00 0.00 2.32
76 77 8.685311 TCCTATATACCCACTACTAACTCCAAT 58.315 37.037 0.00 0.00 0.00 3.16
77 78 8.060727 TCCTATATACCCACTACTAACTCCAA 57.939 38.462 0.00 0.00 0.00 3.53
78 79 7.652757 TCCTATATACCCACTACTAACTCCA 57.347 40.000 0.00 0.00 0.00 3.86
79 80 9.544579 AAATCCTATATACCCACTACTAACTCC 57.455 37.037 0.00 0.00 0.00 3.85
84 85 9.750783 GACTCAAATCCTATATACCCACTACTA 57.249 37.037 0.00 0.00 0.00 1.82
85 86 8.232412 TGACTCAAATCCTATATACCCACTACT 58.768 37.037 0.00 0.00 0.00 2.57
86 87 8.418597 TGACTCAAATCCTATATACCCACTAC 57.581 38.462 0.00 0.00 0.00 2.73
87 88 8.232412 ACTGACTCAAATCCTATATACCCACTA 58.768 37.037 0.00 0.00 0.00 2.74
88 89 7.015682 CACTGACTCAAATCCTATATACCCACT 59.984 40.741 0.00 0.00 0.00 4.00
89 90 7.155328 CACTGACTCAAATCCTATATACCCAC 58.845 42.308 0.00 0.00 0.00 4.61
90 91 6.270000 CCACTGACTCAAATCCTATATACCCA 59.730 42.308 0.00 0.00 0.00 4.51
91 92 6.295916 CCCACTGACTCAAATCCTATATACCC 60.296 46.154 0.00 0.00 0.00 3.69
92 93 6.497259 TCCCACTGACTCAAATCCTATATACC 59.503 42.308 0.00 0.00 0.00 2.73
93 94 7.540474 TCCCACTGACTCAAATCCTATATAC 57.460 40.000 0.00 0.00 0.00 1.47
94 95 7.955750 TGATCCCACTGACTCAAATCCTATATA 59.044 37.037 0.00 0.00 0.00 0.86
95 96 6.789457 TGATCCCACTGACTCAAATCCTATAT 59.211 38.462 0.00 0.00 0.00 0.86
96 97 6.143206 TGATCCCACTGACTCAAATCCTATA 58.857 40.000 0.00 0.00 0.00 1.31
97 98 4.971282 TGATCCCACTGACTCAAATCCTAT 59.029 41.667 0.00 0.00 0.00 2.57
98 99 4.361783 TGATCCCACTGACTCAAATCCTA 58.638 43.478 0.00 0.00 0.00 2.94
99 100 3.184628 TGATCCCACTGACTCAAATCCT 58.815 45.455 0.00 0.00 0.00 3.24
100 101 3.634397 TGATCCCACTGACTCAAATCC 57.366 47.619 0.00 0.00 0.00 3.01
101 102 4.583871 AGTTGATCCCACTGACTCAAATC 58.416 43.478 0.00 0.00 30.06 2.17
102 103 4.647564 AGTTGATCCCACTGACTCAAAT 57.352 40.909 0.00 0.00 30.06 2.32
103 104 5.762179 ATAGTTGATCCCACTGACTCAAA 57.238 39.130 5.15 0.00 30.06 2.69
104 105 5.762179 AATAGTTGATCCCACTGACTCAA 57.238 39.130 5.15 0.00 0.00 3.02
105 106 5.762179 AAATAGTTGATCCCACTGACTCA 57.238 39.130 5.15 0.00 0.00 3.41
106 107 8.738645 ATTTAAATAGTTGATCCCACTGACTC 57.261 34.615 0.00 0.00 0.00 3.36
107 108 9.614792 GTATTTAAATAGTTGATCCCACTGACT 57.385 33.333 8.18 0.00 0.00 3.41
108 109 9.614792 AGTATTTAAATAGTTGATCCCACTGAC 57.385 33.333 8.18 0.00 0.00 3.51
128 129 7.976734 GCAACTCGCATCCTATCTATAGTATTT 59.023 37.037 0.00 0.00 41.79 1.40
129 130 7.484975 GCAACTCGCATCCTATCTATAGTATT 58.515 38.462 0.00 0.00 41.79 1.89
130 131 6.238511 CGCAACTCGCATCCTATCTATAGTAT 60.239 42.308 0.00 0.00 42.60 2.12
131 132 5.064834 CGCAACTCGCATCCTATCTATAGTA 59.935 44.000 0.00 0.00 42.60 1.82
132 133 4.142578 CGCAACTCGCATCCTATCTATAGT 60.143 45.833 0.00 0.00 42.60 2.12
133 134 4.095036 TCGCAACTCGCATCCTATCTATAG 59.905 45.833 0.00 0.00 42.60 1.31
134 135 4.007659 TCGCAACTCGCATCCTATCTATA 58.992 43.478 0.00 0.00 42.60 1.31
135 136 2.820197 TCGCAACTCGCATCCTATCTAT 59.180 45.455 0.00 0.00 42.60 1.98
136 137 2.031069 GTCGCAACTCGCATCCTATCTA 60.031 50.000 0.00 0.00 42.60 1.98
137 138 1.032794 TCGCAACTCGCATCCTATCT 58.967 50.000 0.00 0.00 42.60 1.98
138 139 1.132588 GTCGCAACTCGCATCCTATC 58.867 55.000 0.00 0.00 42.60 2.08
139 140 0.595053 CGTCGCAACTCGCATCCTAT 60.595 55.000 0.00 0.00 42.60 2.57
140 141 1.226575 CGTCGCAACTCGCATCCTA 60.227 57.895 0.00 0.00 42.60 2.94
141 142 2.507102 CGTCGCAACTCGCATCCT 60.507 61.111 0.00 0.00 42.60 3.24
142 143 3.554692 CCGTCGCAACTCGCATCC 61.555 66.667 0.00 0.00 42.60 3.51
143 144 4.210304 GCCGTCGCAACTCGCATC 62.210 66.667 0.00 0.00 42.60 3.91
147 148 3.964221 TAGCTGCCGTCGCAACTCG 62.964 63.158 0.00 0.00 46.66 4.18
148 149 2.126071 TAGCTGCCGTCGCAACTC 60.126 61.111 0.00 0.00 46.66 3.01
149 150 2.432628 GTAGCTGCCGTCGCAACT 60.433 61.111 0.00 0.00 46.66 3.16
150 151 3.838795 CGTAGCTGCCGTCGCAAC 61.839 66.667 0.00 0.00 46.66 4.17
165 166 1.067425 TCTTTGTATACCAGCACGCGT 60.067 47.619 5.58 5.58 0.00 6.01
200 201 4.515404 GGATCACTTCCGAACGGG 57.485 61.111 13.29 0.91 33.93 5.28
207 208 2.107141 CGGAGCCGGATCACTTCC 59.893 66.667 23.22 2.68 41.59 3.46
208 209 1.519455 CACGGAGCCGGATCACTTC 60.519 63.158 23.22 2.46 44.69 3.01
209 210 2.579201 CACGGAGCCGGATCACTT 59.421 61.111 23.22 0.99 44.69 3.16
210 211 4.148825 GCACGGAGCCGGATCACT 62.149 66.667 23.22 1.70 44.69 3.41
219 220 0.739112 CTTCCAGAGAAGCACGGAGC 60.739 60.000 0.00 0.00 42.97 4.70
220 221 3.432517 CTTCCAGAGAAGCACGGAG 57.567 57.895 0.00 0.00 42.97 4.63
228 229 1.593787 CTCGCCAGCTTCCAGAGAA 59.406 57.895 0.00 0.00 0.00 2.87
229 230 2.354401 CCTCGCCAGCTTCCAGAGA 61.354 63.158 6.78 0.00 0.00 3.10
230 231 2.186384 CCTCGCCAGCTTCCAGAG 59.814 66.667 0.00 0.00 0.00 3.35
231 232 2.283894 TCCTCGCCAGCTTCCAGA 60.284 61.111 0.00 0.00 0.00 3.86
232 233 2.186384 CTCCTCGCCAGCTTCCAG 59.814 66.667 0.00 0.00 0.00 3.86
233 234 4.087892 GCTCCTCGCCAGCTTCCA 62.088 66.667 0.00 0.00 33.75 3.53
234 235 3.780173 AGCTCCTCGCCAGCTTCC 61.780 66.667 0.00 0.00 45.34 3.46
235 236 2.511145 CAGCTCCTCGCCAGCTTC 60.511 66.667 0.33 0.00 45.34 3.86
236 237 4.093291 CCAGCTCCTCGCCAGCTT 62.093 66.667 0.33 0.00 45.34 3.74
256 257 2.237751 CCATGGATCCGACGCGTTC 61.238 63.158 15.53 6.67 0.00 3.95
257 258 2.202878 CCATGGATCCGACGCGTT 60.203 61.111 15.53 0.00 0.00 4.84
258 259 3.138930 CTCCATGGATCCGACGCGT 62.139 63.158 16.63 13.85 0.00 6.01
259 260 2.355126 CTCCATGGATCCGACGCG 60.355 66.667 16.63 3.53 0.00 6.01
260 261 2.663188 GCTCCATGGATCCGACGC 60.663 66.667 16.63 10.44 0.00 5.19
261 262 2.029666 GGCTCCATGGATCCGACG 59.970 66.667 18.64 5.47 0.00 5.12
262 263 1.070445 CTGGCTCCATGGATCCGAC 59.930 63.158 25.83 13.59 33.44 4.79
263 264 2.811514 GCTGGCTCCATGGATCCGA 61.812 63.158 25.83 15.64 33.44 4.55
264 265 2.281345 GCTGGCTCCATGGATCCG 60.281 66.667 25.83 21.02 33.44 4.18
265 266 0.536915 GAAGCTGGCTCCATGGATCC 60.537 60.000 25.15 25.15 0.00 3.36
266 267 0.182061 TGAAGCTGGCTCCATGGATC 59.818 55.000 16.63 11.55 0.00 3.36
267 268 0.183014 CTGAAGCTGGCTCCATGGAT 59.817 55.000 16.63 0.00 0.00 3.41
268 269 0.911045 TCTGAAGCTGGCTCCATGGA 60.911 55.000 15.27 15.27 0.00 3.41
269 270 0.034767 TTCTGAAGCTGGCTCCATGG 60.035 55.000 4.97 4.97 0.00 3.66
270 271 1.380524 CTTCTGAAGCTGGCTCCATG 58.619 55.000 4.20 0.00 0.00 3.66
271 272 3.877951 CTTCTGAAGCTGGCTCCAT 57.122 52.632 4.20 0.00 0.00 3.41
281 282 1.743252 GAGGCCACCGCTTCTGAAG 60.743 63.158 13.02 13.02 38.07 3.02
282 283 2.347490 GAGGCCACCGCTTCTGAA 59.653 61.111 5.01 0.00 38.07 3.02
283 284 4.069232 CGAGGCCACCGCTTCTGA 62.069 66.667 5.01 0.00 38.91 3.27
295 296 3.702334 GATTTGCACGTCGCGAGGC 62.702 63.158 27.18 21.97 46.97 4.70
296 297 2.395690 GATTTGCACGTCGCGAGG 59.604 61.111 25.84 25.84 46.97 4.63
297 298 2.395690 GGATTTGCACGTCGCGAG 59.604 61.111 10.24 6.53 46.97 5.03
298 299 3.474904 CGGATTTGCACGTCGCGA 61.475 61.111 3.71 3.71 46.97 5.87
299 300 3.773630 ACGGATTTGCACGTCGCG 61.774 61.111 0.00 0.00 46.97 5.87
300 301 2.202171 CACGGATTTGCACGTCGC 60.202 61.111 0.00 3.44 42.04 5.19
301 302 1.955529 CTCCACGGATTTGCACGTCG 61.956 60.000 0.00 0.00 42.04 5.12
302 303 1.787847 CTCCACGGATTTGCACGTC 59.212 57.895 0.00 0.00 42.04 4.34
303 304 2.325082 GCTCCACGGATTTGCACGT 61.325 57.895 0.00 0.00 45.25 4.49
304 305 2.480555 GCTCCACGGATTTGCACG 59.519 61.111 0.00 0.00 0.00 5.34
305 306 1.970917 CTCGCTCCACGGATTTGCAC 61.971 60.000 0.00 0.00 43.89 4.57
306 307 1.741401 CTCGCTCCACGGATTTGCA 60.741 57.895 0.00 0.00 43.89 4.08
307 308 2.464459 CCTCGCTCCACGGATTTGC 61.464 63.158 0.00 0.00 43.89 3.68
308 309 1.815421 CCCTCGCTCCACGGATTTG 60.815 63.158 0.00 0.00 43.89 2.32
309 310 1.550130 TTCCCTCGCTCCACGGATTT 61.550 55.000 0.00 0.00 43.89 2.17
310 311 1.961180 CTTCCCTCGCTCCACGGATT 61.961 60.000 0.00 0.00 43.89 3.01
311 312 2.363795 TTCCCTCGCTCCACGGAT 60.364 61.111 0.00 0.00 43.89 4.18
312 313 3.068691 CTTCCCTCGCTCCACGGA 61.069 66.667 0.00 0.00 43.89 4.69
313 314 4.821589 GCTTCCCTCGCTCCACGG 62.822 72.222 0.00 0.00 43.89 4.94
314 315 4.821589 GGCTTCCCTCGCTCCACG 62.822 72.222 0.00 0.00 45.62 4.94
315 316 4.475135 GGGCTTCCCTCGCTCCAC 62.475 72.222 0.00 0.00 41.34 4.02
317 318 4.168291 CTGGGCTTCCCTCGCTCC 62.168 72.222 3.27 0.00 45.70 4.70
318 319 4.847444 GCTGGGCTTCCCTCGCTC 62.847 72.222 3.27 0.00 45.70 5.03
320 321 4.416738 AAGCTGGGCTTCCCTCGC 62.417 66.667 3.27 6.11 46.77 5.03
335 336 6.670233 ACTCCTACTTCTATATTTCGCGAAG 58.330 40.000 22.21 10.15 38.95 3.79
336 337 6.630444 ACTCCTACTTCTATATTTCGCGAA 57.370 37.500 19.38 19.38 0.00 4.70
337 338 6.565435 CGAACTCCTACTTCTATATTTCGCGA 60.565 42.308 3.71 3.71 0.00 5.87
338 339 5.564504 CGAACTCCTACTTCTATATTTCGCG 59.435 44.000 0.00 0.00 0.00 5.87
339 340 6.437094 ACGAACTCCTACTTCTATATTTCGC 58.563 40.000 0.00 0.00 37.44 4.70
340 341 8.127327 TGAACGAACTCCTACTTCTATATTTCG 58.873 37.037 0.00 0.00 39.29 3.46
341 342 9.798994 TTGAACGAACTCCTACTTCTATATTTC 57.201 33.333 0.00 0.00 0.00 2.17
346 347 9.583765 GTAATTTGAACGAACTCCTACTTCTAT 57.416 33.333 0.00 0.00 0.00 1.98
347 348 8.579006 TGTAATTTGAACGAACTCCTACTTCTA 58.421 33.333 0.00 0.00 0.00 2.10
348 349 7.439381 TGTAATTTGAACGAACTCCTACTTCT 58.561 34.615 0.00 0.00 0.00 2.85
349 350 7.621633 GCTGTAATTTGAACGAACTCCTACTTC 60.622 40.741 0.00 0.00 0.00 3.01
350 351 6.147328 GCTGTAATTTGAACGAACTCCTACTT 59.853 38.462 0.00 0.00 0.00 2.24
351 352 5.638234 GCTGTAATTTGAACGAACTCCTACT 59.362 40.000 0.00 0.00 0.00 2.57
352 353 5.163884 GGCTGTAATTTGAACGAACTCCTAC 60.164 44.000 0.00 0.00 0.00 3.18
353 354 4.933400 GGCTGTAATTTGAACGAACTCCTA 59.067 41.667 0.00 0.00 0.00 2.94
354 355 3.751698 GGCTGTAATTTGAACGAACTCCT 59.248 43.478 0.00 0.00 0.00 3.69
355 356 3.119955 GGGCTGTAATTTGAACGAACTCC 60.120 47.826 0.00 0.00 0.00 3.85
356 357 3.424433 CGGGCTGTAATTTGAACGAACTC 60.424 47.826 0.00 0.00 0.00 3.01
357 358 2.482721 CGGGCTGTAATTTGAACGAACT 59.517 45.455 0.00 0.00 0.00 3.01
358 359 2.846693 CGGGCTGTAATTTGAACGAAC 58.153 47.619 0.00 0.00 0.00 3.95
359 360 1.198178 GCGGGCTGTAATTTGAACGAA 59.802 47.619 0.00 0.00 0.00 3.85
360 361 0.800012 GCGGGCTGTAATTTGAACGA 59.200 50.000 0.00 0.00 0.00 3.85
361 362 0.802494 AGCGGGCTGTAATTTGAACG 59.198 50.000 0.00 0.00 0.00 3.95
362 363 1.732405 GCAGCGGGCTGTAATTTGAAC 60.732 52.381 20.66 0.00 45.24 3.18
363 364 0.525761 GCAGCGGGCTGTAATTTGAA 59.474 50.000 20.66 0.00 45.24 2.69
364 365 1.312371 GGCAGCGGGCTGTAATTTGA 61.312 55.000 20.66 0.00 45.24 2.69
365 366 1.139520 GGCAGCGGGCTGTAATTTG 59.860 57.895 20.66 0.00 45.24 2.32
366 367 1.304052 TGGCAGCGGGCTGTAATTT 60.304 52.632 20.66 0.00 45.24 1.82
367 368 2.046285 GTGGCAGCGGGCTGTAATT 61.046 57.895 20.66 0.00 45.24 1.40
368 369 2.438434 GTGGCAGCGGGCTGTAAT 60.438 61.111 20.66 0.00 45.24 1.89
369 370 4.715523 GGTGGCAGCGGGCTGTAA 62.716 66.667 20.66 7.77 45.24 2.41
387 388 4.090057 GTTCGGCAGGCACTTCGC 62.090 66.667 0.00 0.00 34.60 4.70
388 389 3.423154 GGTTCGGCAGGCACTTCG 61.423 66.667 0.00 0.00 34.60 3.79
389 390 3.423154 CGGTTCGGCAGGCACTTC 61.423 66.667 0.00 0.00 34.60 3.01
390 391 3.767630 AACGGTTCGGCAGGCACTT 62.768 57.895 0.00 0.00 34.60 3.16
391 392 3.767630 AAACGGTTCGGCAGGCACT 62.768 57.895 0.00 0.00 43.88 4.40
392 393 2.726850 GAAAACGGTTCGGCAGGCAC 62.727 60.000 0.00 0.00 0.00 5.01
393 394 2.517402 AAAACGGTTCGGCAGGCA 60.517 55.556 0.00 0.00 0.00 4.75
394 395 2.254350 GAAAACGGTTCGGCAGGC 59.746 61.111 0.00 0.00 0.00 4.85
395 396 1.574702 GAGGAAAACGGTTCGGCAGG 61.575 60.000 0.00 0.00 0.00 4.85
396 397 0.602905 AGAGGAAAACGGTTCGGCAG 60.603 55.000 0.00 0.00 0.00 4.85
397 398 0.179040 AAGAGGAAAACGGTTCGGCA 60.179 50.000 0.00 0.00 0.00 5.69
398 399 0.949397 AAAGAGGAAAACGGTTCGGC 59.051 50.000 0.00 0.00 0.00 5.54
399 400 1.944709 ACAAAGAGGAAAACGGTTCGG 59.055 47.619 0.00 0.00 0.00 4.30
400 401 3.614588 GAACAAAGAGGAAAACGGTTCG 58.385 45.455 0.00 0.00 0.00 3.95
401 402 3.614588 CGAACAAAGAGGAAAACGGTTC 58.385 45.455 0.00 0.00 0.00 3.62
402 403 2.223409 GCGAACAAAGAGGAAAACGGTT 60.223 45.455 0.00 0.00 0.00 4.44
403 404 1.332686 GCGAACAAAGAGGAAAACGGT 59.667 47.619 0.00 0.00 0.00 4.83
404 405 1.332375 TGCGAACAAAGAGGAAAACGG 59.668 47.619 0.00 0.00 0.00 4.44
405 406 2.639751 CTGCGAACAAAGAGGAAAACG 58.360 47.619 0.00 0.00 0.00 3.60
406 407 2.385315 GCTGCGAACAAAGAGGAAAAC 58.615 47.619 0.00 0.00 0.00 2.43
407 408 1.336755 GGCTGCGAACAAAGAGGAAAA 59.663 47.619 0.00 0.00 0.00 2.29
408 409 0.951558 GGCTGCGAACAAAGAGGAAA 59.048 50.000 0.00 0.00 0.00 3.13
409 410 0.889186 GGGCTGCGAACAAAGAGGAA 60.889 55.000 0.00 0.00 0.00 3.36
410 411 1.302511 GGGCTGCGAACAAAGAGGA 60.303 57.895 0.00 0.00 0.00 3.71
411 412 1.580845 CTGGGCTGCGAACAAAGAGG 61.581 60.000 0.00 0.00 0.00 3.69
412 413 1.871772 CTGGGCTGCGAACAAAGAG 59.128 57.895 0.00 0.00 0.00 2.85
413 414 2.260869 GCTGGGCTGCGAACAAAGA 61.261 57.895 0.00 0.00 0.00 2.52
414 415 2.256461 GCTGGGCTGCGAACAAAG 59.744 61.111 0.00 0.00 0.00 2.77
415 416 3.294493 GGCTGGGCTGCGAACAAA 61.294 61.111 0.00 0.00 0.00 2.83
426 427 4.351054 AAGGCGAACTGGGCTGGG 62.351 66.667 0.00 0.00 42.70 4.45
427 428 2.747855 GAAGGCGAACTGGGCTGG 60.748 66.667 0.00 0.00 42.70 4.85
428 429 0.890996 AAAGAAGGCGAACTGGGCTG 60.891 55.000 0.00 0.00 42.70 4.85
429 430 0.690762 TAAAGAAGGCGAACTGGGCT 59.309 50.000 0.00 0.00 45.86 5.19
430 431 0.803117 GTAAAGAAGGCGAACTGGGC 59.197 55.000 0.00 0.00 0.00 5.36
431 432 2.178912 TGTAAAGAAGGCGAACTGGG 57.821 50.000 0.00 0.00 0.00 4.45
432 433 4.036380 AGTTTTGTAAAGAAGGCGAACTGG 59.964 41.667 0.00 0.00 0.00 4.00
433 434 5.169836 AGTTTTGTAAAGAAGGCGAACTG 57.830 39.130 0.00 0.00 0.00 3.16
434 435 5.049612 GCTAGTTTTGTAAAGAAGGCGAACT 60.050 40.000 0.00 0.00 0.00 3.01
435 436 5.049612 AGCTAGTTTTGTAAAGAAGGCGAAC 60.050 40.000 0.00 0.00 0.00 3.95
439 440 5.383130 CGAAGCTAGTTTTGTAAAGAAGGC 58.617 41.667 0.00 0.00 0.00 4.35
463 464 1.067846 GCCTTCCGTTTTAGCTTTGGG 60.068 52.381 0.00 0.00 0.00 4.12
476 487 4.688879 TGCGATATTTAGTAATGCCTTCCG 59.311 41.667 0.00 0.00 0.00 4.30
485 496 2.216940 GCGTGCGTGCGATATTTAGTAA 59.783 45.455 5.04 0.00 0.00 2.24
511 526 7.275341 GGAGATGCTCTGATATAGTTTGATTCG 59.725 40.741 0.00 0.00 0.00 3.34
677 748 2.202650 GCGCGCCAAATCTTGCAT 60.203 55.556 23.24 0.00 0.00 3.96
763 920 1.379176 CGTGGCAGAGAGGGAGAGA 60.379 63.158 0.00 0.00 0.00 3.10
1005 1197 3.064207 GAGCGTGTACACATCTTGGAAA 58.936 45.455 24.98 0.00 0.00 3.13
1129 1321 1.613630 AGTCCGCCATGACCCTCTT 60.614 57.895 0.00 0.00 35.83 2.85
1318 1510 1.446099 GCCACTGCTCATCGTTCGA 60.446 57.895 0.00 0.00 33.53 3.71
1331 1523 0.618680 TAGCCAGATGTCCAGCCACT 60.619 55.000 0.00 0.00 0.00 4.00
1711 1930 2.740055 GTGCGTGCTGGTCTCCTG 60.740 66.667 0.00 0.00 0.00 3.86
1724 1943 2.319011 TAGGCTCTAGAACGCGTGCG 62.319 60.000 14.98 13.39 46.03 5.34
1725 1944 0.592754 CTAGGCTCTAGAACGCGTGC 60.593 60.000 14.98 12.39 0.00 5.34
1726 1945 0.592754 GCTAGGCTCTAGAACGCGTG 60.593 60.000 14.98 0.00 0.00 5.34
1727 1946 0.748729 AGCTAGGCTCTAGAACGCGT 60.749 55.000 5.58 5.58 30.62 6.01
1728 1947 0.317436 CAGCTAGGCTCTAGAACGCG 60.317 60.000 3.53 3.53 36.40 6.01
1729 1948 0.031449 CCAGCTAGGCTCTAGAACGC 59.969 60.000 11.96 0.00 36.40 4.84
1730 1949 1.681538 TCCAGCTAGGCTCTAGAACG 58.318 55.000 11.96 0.00 36.40 3.95
1731 1950 4.081365 AGTTTTCCAGCTAGGCTCTAGAAC 60.081 45.833 11.96 7.06 36.40 3.01
1732 1951 4.097418 AGTTTTCCAGCTAGGCTCTAGAA 58.903 43.478 11.96 0.00 36.40 2.10
1733 1952 3.714144 AGTTTTCCAGCTAGGCTCTAGA 58.286 45.455 11.96 0.00 36.40 2.43
1734 1953 4.081420 TCAAGTTTTCCAGCTAGGCTCTAG 60.081 45.833 0.00 5.20 36.40 2.43
1735 1954 3.838317 TCAAGTTTTCCAGCTAGGCTCTA 59.162 43.478 0.00 0.00 36.40 2.43
1736 1955 2.639839 TCAAGTTTTCCAGCTAGGCTCT 59.360 45.455 0.00 0.00 36.40 4.09
1737 1956 3.059352 TCAAGTTTTCCAGCTAGGCTC 57.941 47.619 0.00 0.00 36.40 4.70
1738 1957 3.615155 GATCAAGTTTTCCAGCTAGGCT 58.385 45.455 0.00 0.00 40.77 4.58
1739 1958 2.685388 GGATCAAGTTTTCCAGCTAGGC 59.315 50.000 0.00 0.00 37.29 3.93
1740 1959 3.944015 CAGGATCAAGTTTTCCAGCTAGG 59.056 47.826 0.00 0.00 34.27 3.02
1741 1960 4.836825 TCAGGATCAAGTTTTCCAGCTAG 58.163 43.478 0.00 0.00 34.27 3.42
1742 1961 4.908601 TCAGGATCAAGTTTTCCAGCTA 57.091 40.909 0.00 0.00 34.27 3.32
1743 1962 3.795688 TCAGGATCAAGTTTTCCAGCT 57.204 42.857 0.00 0.00 34.27 4.24
1744 1963 4.012374 TGATCAGGATCAAGTTTTCCAGC 58.988 43.478 9.43 0.00 44.14 4.85
1756 1975 4.441773 CGATGGGATGAGATGATCAGGATC 60.442 50.000 0.09 2.30 42.53 3.36
1757 1976 3.451540 CGATGGGATGAGATGATCAGGAT 59.548 47.826 0.09 0.00 42.53 3.24
1758 1977 2.830321 CGATGGGATGAGATGATCAGGA 59.170 50.000 0.09 0.00 42.53 3.86
1759 1978 2.830321 TCGATGGGATGAGATGATCAGG 59.170 50.000 0.09 0.00 42.53 3.86
1760 1979 4.684877 GATCGATGGGATGAGATGATCAG 58.315 47.826 0.54 0.00 42.53 2.90
1761 1980 3.129988 CGATCGATGGGATGAGATGATCA 59.870 47.826 10.26 0.00 43.70 2.92
1762 1981 3.704512 CGATCGATGGGATGAGATGATC 58.295 50.000 10.26 0.00 34.82 2.92
1763 1982 2.159128 GCGATCGATGGGATGAGATGAT 60.159 50.000 21.57 0.00 34.82 2.45
1764 1983 1.203287 GCGATCGATGGGATGAGATGA 59.797 52.381 21.57 0.00 34.82 2.92
1765 1984 1.067354 TGCGATCGATGGGATGAGATG 60.067 52.381 21.57 0.00 34.82 2.90
1766 1985 1.067283 GTGCGATCGATGGGATGAGAT 60.067 52.381 21.57 0.00 34.82 2.75
1767 1986 0.315251 GTGCGATCGATGGGATGAGA 59.685 55.000 21.57 0.00 34.82 3.27
1768 1987 1.005804 CGTGCGATCGATGGGATGAG 61.006 60.000 21.57 2.13 34.82 2.90
1769 1988 1.007387 CGTGCGATCGATGGGATGA 60.007 57.895 21.57 0.00 34.82 2.92
1770 1989 2.661566 GCGTGCGATCGATGGGATG 61.662 63.158 21.57 15.26 34.82 3.51
1771 1990 2.356313 GCGTGCGATCGATGGGAT 60.356 61.111 21.57 0.00 38.35 3.85
1772 1991 4.923710 CGCGTGCGATCGATGGGA 62.924 66.667 21.57 0.00 42.83 4.37
1775 1994 3.682315 GACCGCGTGCGATCGATG 61.682 66.667 21.57 10.57 42.83 3.84
1776 1995 4.187810 TGACCGCGTGCGATCGAT 62.188 61.111 21.57 0.00 42.83 3.59
1784 2003 3.345808 CTTGGTGGTGACCGCGTG 61.346 66.667 9.34 0.00 46.62 5.34
1817 2036 2.664436 GCCTTTTCCACGTCCGTCG 61.664 63.158 0.00 0.00 46.00 5.12
1818 2037 2.664436 CGCCTTTTCCACGTCCGTC 61.664 63.158 0.00 0.00 0.00 4.79
1819 2038 2.663852 CGCCTTTTCCACGTCCGT 60.664 61.111 0.00 0.00 0.00 4.69
1820 2039 3.419759 CCGCCTTTTCCACGTCCG 61.420 66.667 0.00 0.00 0.00 4.79
1821 2040 3.733960 GCCGCCTTTTCCACGTCC 61.734 66.667 0.00 0.00 0.00 4.79
1822 2041 4.084888 CGCCGCCTTTTCCACGTC 62.085 66.667 0.00 0.00 0.00 4.34
1828 2047 3.500642 GAGAGCCGCCGCCTTTTC 61.501 66.667 0.00 0.00 34.57 2.29
1834 2053 4.537433 ATTCAGGAGAGCCGCCGC 62.537 66.667 0.00 0.00 39.96 6.53
1835 2054 2.279784 GATTCAGGAGAGCCGCCG 60.280 66.667 0.00 0.00 39.96 6.46
1836 2055 0.531753 GAAGATTCAGGAGAGCCGCC 60.532 60.000 0.00 0.00 39.96 6.13
1837 2056 0.463620 AGAAGATTCAGGAGAGCCGC 59.536 55.000 0.00 0.00 39.96 6.53
1838 2057 1.805871 GCAGAAGATTCAGGAGAGCCG 60.806 57.143 0.00 0.00 39.96 5.52
1839 2058 1.209019 TGCAGAAGATTCAGGAGAGCC 59.791 52.381 0.00 0.00 0.00 4.70
1840 2059 2.687700 TGCAGAAGATTCAGGAGAGC 57.312 50.000 0.00 0.00 0.00 4.09
1841 2060 4.139859 ACATGCAGAAGATTCAGGAGAG 57.860 45.455 0.00 0.00 0.00 3.20
1842 2061 4.511527 GAACATGCAGAAGATTCAGGAGA 58.488 43.478 0.00 0.00 0.00 3.71
1843 2062 3.309138 CGAACATGCAGAAGATTCAGGAG 59.691 47.826 0.00 0.00 0.00 3.69
1844 2063 3.264947 CGAACATGCAGAAGATTCAGGA 58.735 45.455 0.00 0.00 0.00 3.86
1845 2064 3.005554 ACGAACATGCAGAAGATTCAGG 58.994 45.455 0.00 0.00 0.00 3.86
1846 2065 3.434641 ACACGAACATGCAGAAGATTCAG 59.565 43.478 0.00 0.00 0.00 3.02
1847 2066 3.187022 CACACGAACATGCAGAAGATTCA 59.813 43.478 0.00 0.00 0.00 2.57
1848 2067 3.425359 CCACACGAACATGCAGAAGATTC 60.425 47.826 0.00 0.00 0.00 2.52
1849 2068 2.485426 CCACACGAACATGCAGAAGATT 59.515 45.455 0.00 0.00 0.00 2.40
1850 2069 2.079158 CCACACGAACATGCAGAAGAT 58.921 47.619 0.00 0.00 0.00 2.40
1851 2070 1.511850 CCACACGAACATGCAGAAGA 58.488 50.000 0.00 0.00 0.00 2.87
1852 2071 0.110056 GCCACACGAACATGCAGAAG 60.110 55.000 0.00 0.00 0.00 2.85
1853 2072 1.514678 GGCCACACGAACATGCAGAA 61.515 55.000 0.00 0.00 0.00 3.02
1854 2073 1.965930 GGCCACACGAACATGCAGA 60.966 57.895 0.00 0.00 0.00 4.26
1855 2074 1.794151 TTGGCCACACGAACATGCAG 61.794 55.000 3.88 0.00 0.00 4.41
1856 2075 1.825622 TTGGCCACACGAACATGCA 60.826 52.632 3.88 0.00 0.00 3.96
1857 2076 1.371635 GTTGGCCACACGAACATGC 60.372 57.895 3.88 0.00 37.00 4.06
1858 2077 1.082169 CGTTGGCCACACGAACATG 60.082 57.895 26.29 5.52 36.84 3.21
1859 2078 1.503818 GACGTTGGCCACACGAACAT 61.504 55.000 32.66 18.57 36.84 2.71
1860 2079 2.125065 ACGTTGGCCACACGAACA 60.125 55.556 32.66 7.16 36.84 3.18
1861 2080 1.707239 TTGACGTTGGCCACACGAAC 61.707 55.000 32.66 26.20 33.94 3.95
1862 2081 0.816018 ATTGACGTTGGCCACACGAA 60.816 50.000 32.66 22.72 0.00 3.85
1863 2082 0.816018 AATTGACGTTGGCCACACGA 60.816 50.000 32.66 18.97 0.00 4.35
1864 2083 0.385473 GAATTGACGTTGGCCACACG 60.385 55.000 27.65 27.65 0.00 4.49
1865 2084 0.385473 CGAATTGACGTTGGCCACAC 60.385 55.000 3.88 6.45 0.00 3.82
1866 2085 0.816018 ACGAATTGACGTTGGCCACA 60.816 50.000 3.88 0.00 44.14 4.17
1867 2086 1.946267 ACGAATTGACGTTGGCCAC 59.054 52.632 3.88 0.00 44.14 5.01
1868 2087 4.466133 ACGAATTGACGTTGGCCA 57.534 50.000 0.00 0.00 44.14 5.36
1878 2097 4.264380 TGACGTCGATGTATCAACGAATTG 59.736 41.667 10.95 2.15 39.42 2.32
1879 2098 4.417506 TGACGTCGATGTATCAACGAATT 58.582 39.130 10.95 0.00 39.42 2.17
1880 2099 4.023739 TGACGTCGATGTATCAACGAAT 57.976 40.909 10.95 0.00 39.42 3.34
1881 2100 3.474693 TGACGTCGATGTATCAACGAA 57.525 42.857 10.95 0.00 39.42 3.85
1882 2101 3.125658 TCTTGACGTCGATGTATCAACGA 59.874 43.478 10.95 8.30 39.42 3.85
1883 2102 3.237660 GTCTTGACGTCGATGTATCAACG 59.762 47.826 10.95 3.99 42.49 4.10
1884 2103 4.163552 TGTCTTGACGTCGATGTATCAAC 58.836 43.478 10.95 7.91 0.00 3.18
1885 2104 4.428615 TGTCTTGACGTCGATGTATCAA 57.571 40.909 10.95 10.65 0.00 2.57
1886 2105 4.428615 TTGTCTTGACGTCGATGTATCA 57.571 40.909 10.95 2.38 0.00 2.15
1887 2106 5.756950 TTTTGTCTTGACGTCGATGTATC 57.243 39.130 10.95 0.00 0.00 2.24
1888 2107 6.590292 AGATTTTTGTCTTGACGTCGATGTAT 59.410 34.615 10.95 0.00 0.00 2.29
1889 2108 5.924254 AGATTTTTGTCTTGACGTCGATGTA 59.076 36.000 10.95 0.00 0.00 2.29
1890 2109 4.750098 AGATTTTTGTCTTGACGTCGATGT 59.250 37.500 10.75 10.75 0.00 3.06
1891 2110 5.269459 AGATTTTTGTCTTGACGTCGATG 57.731 39.130 11.62 2.26 0.00 3.84
1892 2111 4.389077 GGAGATTTTTGTCTTGACGTCGAT 59.611 41.667 11.62 0.00 0.00 3.59
1893 2112 3.739300 GGAGATTTTTGTCTTGACGTCGA 59.261 43.478 11.62 8.40 0.00 4.20
1894 2113 3.493129 TGGAGATTTTTGTCTTGACGTCG 59.507 43.478 11.62 0.00 0.00 5.12
1895 2114 4.083802 CCTGGAGATTTTTGTCTTGACGTC 60.084 45.833 9.11 9.11 0.00 4.34
1896 2115 3.815401 CCTGGAGATTTTTGTCTTGACGT 59.185 43.478 0.00 0.00 0.00 4.34
1897 2116 4.065088 TCCTGGAGATTTTTGTCTTGACG 58.935 43.478 0.00 0.00 0.00 4.35
1898 2117 4.083057 GCTCCTGGAGATTTTTGTCTTGAC 60.083 45.833 27.53 0.21 0.00 3.18
1899 2118 4.074970 GCTCCTGGAGATTTTTGTCTTGA 58.925 43.478 27.53 0.00 0.00 3.02
1900 2119 3.192212 GGCTCCTGGAGATTTTTGTCTTG 59.808 47.826 27.53 0.00 0.00 3.02
1901 2120 3.181429 TGGCTCCTGGAGATTTTTGTCTT 60.181 43.478 27.53 0.00 0.00 3.01
1902 2121 2.376518 TGGCTCCTGGAGATTTTTGTCT 59.623 45.455 27.53 0.00 0.00 3.41
1903 2122 2.795329 TGGCTCCTGGAGATTTTTGTC 58.205 47.619 27.53 6.52 0.00 3.18
1904 2123 2.978156 TGGCTCCTGGAGATTTTTGT 57.022 45.000 27.53 0.00 0.00 2.83
1905 2124 3.129988 GTCATGGCTCCTGGAGATTTTTG 59.870 47.826 27.53 15.05 0.00 2.44
1906 2125 3.011032 AGTCATGGCTCCTGGAGATTTTT 59.989 43.478 27.53 3.75 0.00 1.94
1907 2126 2.579860 AGTCATGGCTCCTGGAGATTTT 59.420 45.455 27.53 5.54 0.00 1.82
1908 2127 2.203584 AGTCATGGCTCCTGGAGATTT 58.796 47.619 27.53 7.36 0.00 2.17
1909 2128 1.890552 AGTCATGGCTCCTGGAGATT 58.109 50.000 27.53 7.72 0.00 2.40
1910 2129 2.607499 CTAGTCATGGCTCCTGGAGAT 58.393 52.381 27.53 9.94 0.00 2.75
1911 2130 1.412217 CCTAGTCATGGCTCCTGGAGA 60.412 57.143 27.53 7.78 0.00 3.71
1912 2131 1.047002 CCTAGTCATGGCTCCTGGAG 58.953 60.000 19.55 19.55 0.00 3.86
1913 2132 0.636647 TCCTAGTCATGGCTCCTGGA 59.363 55.000 1.25 7.84 0.00 3.86
1914 2133 1.047002 CTCCTAGTCATGGCTCCTGG 58.953 60.000 1.25 5.28 0.00 4.45
1915 2134 1.047002 CCTCCTAGTCATGGCTCCTG 58.953 60.000 1.25 0.00 0.00 3.86
1916 2135 0.937441 TCCTCCTAGTCATGGCTCCT 59.063 55.000 1.25 0.00 0.00 3.69
1917 2136 1.133325 TCTCCTCCTAGTCATGGCTCC 60.133 57.143 1.25 0.00 0.00 4.70
1918 2137 1.960689 GTCTCCTCCTAGTCATGGCTC 59.039 57.143 1.25 0.00 0.00 4.70
1919 2138 1.412361 GGTCTCCTCCTAGTCATGGCT 60.412 57.143 4.63 4.63 0.00 4.75
1920 2139 1.044611 GGTCTCCTCCTAGTCATGGC 58.955 60.000 0.00 0.00 0.00 4.40
1921 2140 1.133761 TCGGTCTCCTCCTAGTCATGG 60.134 57.143 0.00 0.00 0.00 3.66
1922 2141 2.226330 CTCGGTCTCCTCCTAGTCATG 58.774 57.143 0.00 0.00 0.00 3.07
1923 2142 1.477923 GCTCGGTCTCCTCCTAGTCAT 60.478 57.143 0.00 0.00 0.00 3.06
1924 2143 0.107116 GCTCGGTCTCCTCCTAGTCA 60.107 60.000 0.00 0.00 0.00 3.41
1925 2144 0.107116 TGCTCGGTCTCCTCCTAGTC 60.107 60.000 0.00 0.00 0.00 2.59
1926 2145 0.394625 GTGCTCGGTCTCCTCCTAGT 60.395 60.000 0.00 0.00 0.00 2.57
1927 2146 1.440938 CGTGCTCGGTCTCCTCCTAG 61.441 65.000 0.00 0.00 0.00 3.02
1928 2147 1.451567 CGTGCTCGGTCTCCTCCTA 60.452 63.158 0.00 0.00 0.00 2.94
1929 2148 2.752238 CGTGCTCGGTCTCCTCCT 60.752 66.667 0.00 0.00 0.00 3.69
1930 2149 4.500116 GCGTGCTCGGTCTCCTCC 62.500 72.222 10.52 0.00 37.56 4.30
1931 2150 4.838486 CGCGTGCTCGGTCTCCTC 62.838 72.222 10.52 0.00 37.56 3.71
1934 2153 3.612371 AAGACGCGTGCTCGGTCTC 62.612 63.158 20.70 0.00 42.23 3.36
1935 2154 3.671411 AAGACGCGTGCTCGGTCT 61.671 61.111 20.70 19.62 43.61 3.85
1936 2155 3.470567 CAAGACGCGTGCTCGGTC 61.471 66.667 20.70 16.74 37.45 4.79
1938 2157 4.717629 TCCAAGACGCGTGCTCGG 62.718 66.667 20.70 13.00 37.56 4.63
1939 2158 3.470567 GTCCAAGACGCGTGCTCG 61.471 66.667 20.70 2.71 40.37 5.03
1957 2176 2.677979 GGGAAAGCTTGTCGGCGAC 61.678 63.158 31.68 31.68 37.29 5.19
1958 2177 2.358247 GGGAAAGCTTGTCGGCGA 60.358 61.111 4.99 4.99 37.29 5.54
1959 2178 3.788766 CGGGAAAGCTTGTCGGCG 61.789 66.667 0.00 0.00 37.29 6.46
1960 2179 2.668550 ACGGGAAAGCTTGTCGGC 60.669 61.111 16.78 0.00 0.00 5.54
1961 2180 2.325082 CCACGGGAAAGCTTGTCGG 61.325 63.158 16.78 11.39 0.00 4.79
1962 2181 2.966309 GCCACGGGAAAGCTTGTCG 61.966 63.158 0.00 7.26 0.00 4.35
1963 2182 2.626780 GGCCACGGGAAAGCTTGTC 61.627 63.158 0.00 0.00 0.00 3.18
1964 2183 2.597510 GGCCACGGGAAAGCTTGT 60.598 61.111 0.00 0.00 0.00 3.16
1965 2184 3.737172 CGGCCACGGGAAAGCTTG 61.737 66.667 2.24 0.00 36.18 4.01
1975 2194 1.516365 ATAGATCGAGACCGGCCACG 61.516 60.000 0.00 0.00 40.55 4.94
1976 2195 0.241481 GATAGATCGAGACCGGCCAC 59.759 60.000 0.00 0.00 36.24 5.01
1977 2196 2.642425 GATAGATCGAGACCGGCCA 58.358 57.895 0.00 0.00 36.24 5.36
1991 2210 1.278238 GTGCAAAGGACCGTCGATAG 58.722 55.000 0.00 0.00 0.00 2.08
1992 2211 0.108520 GGTGCAAAGGACCGTCGATA 60.109 55.000 0.00 0.00 0.00 2.92
1993 2212 1.375523 GGTGCAAAGGACCGTCGAT 60.376 57.895 0.00 0.00 0.00 3.59
1994 2213 2.029964 GGTGCAAAGGACCGTCGA 59.970 61.111 0.00 0.00 0.00 4.20
1999 2218 4.966787 TGGCCGGTGCAAAGGACC 62.967 66.667 11.62 11.96 40.13 4.46
2000 2219 3.670377 GTGGCCGGTGCAAAGGAC 61.670 66.667 12.43 10.06 40.13 3.85
2001 2220 4.966787 GGTGGCCGGTGCAAAGGA 62.967 66.667 12.43 0.00 40.13 3.36
2014 2233 4.708386 TAAAGCCCGCCACGGTGG 62.708 66.667 22.87 22.87 46.80 4.61
2015 2234 3.428282 GTAAAGCCCGCCACGGTG 61.428 66.667 5.17 0.00 46.80 4.94
2016 2235 4.710167 GGTAAAGCCCGCCACGGT 62.710 66.667 5.17 0.00 46.80 4.83
2018 2237 2.359478 AAGGTAAAGCCCGCCACG 60.359 61.111 0.00 0.00 38.26 4.94
2019 2238 2.044555 GGAAGGTAAAGCCCGCCAC 61.045 63.158 0.00 0.00 38.26 5.01
2020 2239 1.858739 ATGGAAGGTAAAGCCCGCCA 61.859 55.000 0.00 0.00 42.67 5.69
2021 2240 0.181824 TATGGAAGGTAAAGCCCGCC 59.818 55.000 0.00 0.00 38.26 6.13
2022 2241 2.271944 ATATGGAAGGTAAAGCCCGC 57.728 50.000 0.00 0.00 38.26 6.13
2023 2242 3.006110 TCGTATATGGAAGGTAAAGCCCG 59.994 47.826 0.00 0.00 38.26 6.13
2024 2243 4.313282 GTCGTATATGGAAGGTAAAGCCC 58.687 47.826 0.00 0.00 38.26 5.19
2025 2244 4.202284 TGGTCGTATATGGAAGGTAAAGCC 60.202 45.833 0.00 0.00 37.58 4.35
2026 2245 4.952460 TGGTCGTATATGGAAGGTAAAGC 58.048 43.478 0.00 0.00 0.00 3.51
2027 2246 6.164176 GGATGGTCGTATATGGAAGGTAAAG 58.836 44.000 0.00 0.00 0.00 1.85
2028 2247 5.279106 CGGATGGTCGTATATGGAAGGTAAA 60.279 44.000 0.00 0.00 0.00 2.01
2029 2248 4.219070 CGGATGGTCGTATATGGAAGGTAA 59.781 45.833 0.00 0.00 0.00 2.85
2030 2249 3.760151 CGGATGGTCGTATATGGAAGGTA 59.240 47.826 0.00 0.00 0.00 3.08
2031 2250 2.561419 CGGATGGTCGTATATGGAAGGT 59.439 50.000 0.00 0.00 0.00 3.50
2032 2251 2.561419 ACGGATGGTCGTATATGGAAGG 59.439 50.000 0.00 0.00 41.98 3.46
2033 2252 3.005472 ACACGGATGGTCGTATATGGAAG 59.995 47.826 0.00 0.00 41.86 3.46
2034 2253 2.960384 ACACGGATGGTCGTATATGGAA 59.040 45.455 0.00 0.00 41.86 3.53
2035 2254 2.295070 CACACGGATGGTCGTATATGGA 59.705 50.000 0.00 0.00 41.86 3.41
2036 2255 2.295070 TCACACGGATGGTCGTATATGG 59.705 50.000 0.00 0.00 41.86 2.74
2037 2256 3.636282 TCACACGGATGGTCGTATATG 57.364 47.619 0.00 0.00 41.86 1.78
2038 2257 3.192844 GGATCACACGGATGGTCGTATAT 59.807 47.826 0.00 0.00 41.86 0.86
2039 2258 2.555325 GGATCACACGGATGGTCGTATA 59.445 50.000 0.00 0.00 41.86 1.47
2040 2259 1.340248 GGATCACACGGATGGTCGTAT 59.660 52.381 0.00 0.00 41.86 3.06
2041 2260 0.742505 GGATCACACGGATGGTCGTA 59.257 55.000 0.00 0.00 41.86 3.43
2042 2261 1.254975 TGGATCACACGGATGGTCGT 61.255 55.000 0.00 0.00 44.91 4.34
2043 2262 0.806102 GTGGATCACACGGATGGTCG 60.806 60.000 0.00 0.00 40.85 4.79
2044 2263 3.065575 GTGGATCACACGGATGGTC 57.934 57.895 0.00 0.00 40.85 4.02
2053 2272 2.363975 GGCGGGGTAGTGGATCACA 61.364 63.158 0.00 0.00 36.74 3.58
2054 2273 2.504519 GGCGGGGTAGTGGATCAC 59.495 66.667 0.00 0.00 34.10 3.06
2055 2274 2.766651 GGGCGGGGTAGTGGATCA 60.767 66.667 0.00 0.00 0.00 2.92
2056 2275 3.557290 GGGGCGGGGTAGTGGATC 61.557 72.222 0.00 0.00 0.00 3.36
2090 2309 3.701604 CTGTCCACGCTAGGTCGGC 62.702 68.421 0.00 0.00 0.00 5.54
2091 2310 2.490217 CTGTCCACGCTAGGTCGG 59.510 66.667 0.00 0.00 0.00 4.79
2092 2311 2.202623 GCTGTCCACGCTAGGTCG 60.203 66.667 0.00 0.00 0.00 4.79
2093 2312 2.184579 GGCTGTCCACGCTAGGTC 59.815 66.667 0.00 0.00 0.00 3.85
2094 2313 3.391382 GGGCTGTCCACGCTAGGT 61.391 66.667 0.00 0.00 35.00 3.08
2095 2314 3.077556 AGGGCTGTCCACGCTAGG 61.078 66.667 0.00 0.00 38.24 3.02
2096 2315 2.185350 CAGGGCTGTCCACGCTAG 59.815 66.667 0.00 0.00 38.24 3.42
2097 2316 4.082523 GCAGGGCTGTCCACGCTA 62.083 66.667 0.00 0.00 38.24 4.26
2129 2348 3.497031 GGCTTTCGGCGTAGTGGC 61.497 66.667 6.85 3.07 42.94 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.