Multiple sequence alignment - TraesCS6B01G334500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G334500 chr6B 100.000 6193 0 0 1 6193 587738647 587744839 0.000000e+00 11437.0
1 TraesCS6B01G334500 chr6B 92.254 1007 65 4 4592 5588 185006571 185007574 0.000000e+00 1415.0
2 TraesCS6B01G334500 chr6B 95.221 544 21 4 3158 3699 185001383 185001923 0.000000e+00 856.0
3 TraesCS6B01G334500 chr6B 92.798 486 23 7 4110 4593 185001922 185002397 0.000000e+00 693.0
4 TraesCS6B01G334500 chr6B 83.491 527 69 14 809 1330 257979944 257979431 5.620000e-130 475.0
5 TraesCS6B01G334500 chr6B 96.296 108 4 0 6086 6193 583880573 583880680 1.770000e-40 178.0
6 TraesCS6B01G334500 chr7B 96.409 5402 160 14 709 6091 336256540 336261926 0.000000e+00 8870.0
7 TraesCS6B01G334500 chr7B 93.993 1515 69 13 4592 6094 345993255 345994759 0.000000e+00 2274.0
8 TraesCS6B01G334500 chr7B 93.721 1290 71 4 4592 5872 20342487 20341199 0.000000e+00 1925.0
9 TraesCS6B01G334500 chr7B 92.542 885 62 4 708 1589 345985529 345986412 0.000000e+00 1266.0
10 TraesCS6B01G334500 chr7B 95.839 721 25 4 1 721 21042075 21042790 0.000000e+00 1160.0
11 TraesCS6B01G334500 chr7B 93.378 740 48 1 843 1581 20347869 20347130 0.000000e+00 1094.0
12 TraesCS6B01G334500 chr7B 93.192 661 34 3 3739 4391 345989361 345990018 0.000000e+00 961.0
13 TraesCS6B01G334500 chr7B 95.904 586 19 4 3158 3742 345988658 345989239 0.000000e+00 944.0
14 TraesCS6B01G334500 chr7B 94.490 363 17 2 2800 3161 345987069 345987429 1.950000e-154 556.0
15 TraesCS6B01G334500 chr7B 94.925 335 16 1 2800 3134 20346463 20346130 1.980000e-144 523.0
16 TraesCS6B01G334500 chr7B 92.541 362 20 4 2800 3161 178422204 178422558 4.280000e-141 512.0
17 TraesCS6B01G334500 chr7B 84.322 236 17 6 1357 1590 178421352 178421569 4.860000e-51 213.0
18 TraesCS6B01G334500 chr3B 95.695 5389 199 15 708 6090 589662858 589657497 0.000000e+00 8636.0
19 TraesCS6B01G334500 chr3B 95.193 2455 112 6 709 3161 455487339 455489789 0.000000e+00 3875.0
20 TraesCS6B01G334500 chr3B 95.131 1561 68 6 3158 4712 455491299 455492857 0.000000e+00 2455.0
21 TraesCS6B01G334500 chr3B 96.101 1385 51 3 4708 6091 455493582 455494964 0.000000e+00 2255.0
22 TraesCS6B01G334500 chr3B 92.779 1011 59 4 4592 5588 648412372 648413382 0.000000e+00 1450.0
23 TraesCS6B01G334500 chr3B 95.927 712 26 2 1 710 702584390 702583680 0.000000e+00 1151.0
24 TraesCS6B01G334500 chr3B 95.404 544 20 4 3158 3699 648407301 648407841 0.000000e+00 861.0
25 TraesCS6B01G334500 chr3B 91.770 486 28 7 4110 4593 648407840 648408315 0.000000e+00 665.0
26 TraesCS6B01G334500 chr5B 96.362 4590 157 6 1518 6099 463405895 463401308 0.000000e+00 7542.0
27 TraesCS6B01G334500 chr5B 96.596 3349 91 4 1518 4843 22036233 22032885 0.000000e+00 5531.0
28 TraesCS6B01G334500 chr5B 96.064 1194 44 3 4896 6088 22032572 22031381 0.000000e+00 1941.0
29 TraesCS6B01G334500 chr5B 91.956 1007 65 5 4592 5588 389241026 389242026 0.000000e+00 1397.0
30 TraesCS6B01G334500 chr5B 95.221 544 21 4 3158 3699 389235912 389236452 0.000000e+00 856.0
31 TraesCS6B01G334500 chr5B 92.593 486 24 7 4110 4593 389236451 389236926 0.000000e+00 688.0
32 TraesCS6B01G334500 chr4B 90.454 1519 101 18 4592 6091 152081069 152079576 0.000000e+00 1962.0
33 TraesCS6B01G334500 chr4B 96.056 710 26 2 1 710 643420487 643421194 0.000000e+00 1155.0
34 TraesCS6B01G334500 chr4B 93.673 569 33 3 5532 6100 148359572 148359007 0.000000e+00 848.0
35 TraesCS6B01G334500 chr2B 93.433 1005 56 4 4592 5588 746309299 746308297 0.000000e+00 1482.0
36 TraesCS6B01G334500 chr2B 92.178 652 51 0 712 1363 685735021 685735672 0.000000e+00 922.0
37 TraesCS6B01G334500 chr2B 94.821 560 27 2 5532 6091 654442231 654441674 0.000000e+00 872.0
38 TraesCS6B01G334500 chr2B 90.947 486 32 7 4110 4593 746311632 746311157 1.460000e-180 643.0
39 TraesCS6B01G334500 chr2B 91.540 461 25 9 4110 4567 388577254 388576805 1.900000e-174 623.0
40 TraesCS6B01G334500 chr2B 84.153 366 49 4 2088 2453 184875722 184875366 4.600000e-91 346.0
41 TraesCS6B01G334500 chr2B 83.844 359 39 10 2436 2784 184875148 184874799 2.150000e-84 324.0
42 TraesCS6B01G334500 chr2B 82.029 345 60 2 1602 1945 184876077 184875734 6.070000e-75 292.0
43 TraesCS6B01G334500 chr5A 90.832 938 79 5 3158 4091 337891739 337890805 0.000000e+00 1249.0
44 TraesCS6B01G334500 chr2A 90.415 939 85 4 3158 4091 347861798 347862736 0.000000e+00 1230.0
45 TraesCS6B01G334500 chr7A 90.138 943 80 11 3158 4091 354945428 354946366 0.000000e+00 1214.0
46 TraesCS6B01G334500 chr7A 96.444 703 24 1 8 710 314313630 314314331 0.000000e+00 1158.0
47 TraesCS6B01G334500 chr7A 96.197 710 24 2 1 710 423520769 423521475 0.000000e+00 1158.0
48 TraesCS6B01G334500 chr7A 96.444 703 24 1 8 710 436656246 436655545 0.000000e+00 1158.0
49 TraesCS6B01G334500 chr4A 96.996 699 20 1 12 710 526721712 526722409 0.000000e+00 1173.0
50 TraesCS6B01G334500 chr6D 96.728 703 22 1 8 710 14832363 14831662 0.000000e+00 1170.0
51 TraesCS6B01G334500 chr6D 86.916 428 44 7 3673 4090 368372356 368371931 2.610000e-128 470.0
52 TraesCS6B01G334500 chr6D 97.115 104 3 0 6090 6193 375043382 375043279 6.380000e-40 176.0
53 TraesCS6B01G334500 chr6D 87.500 64 4 3 4318 4377 406649702 406649639 3.100000e-08 71.3
54 TraesCS6B01G334500 chr5D 96.728 703 22 1 8 710 534828051 534827350 0.000000e+00 1170.0
55 TraesCS6B01G334500 chr5D 91.616 656 45 5 709 1363 249162376 249161730 0.000000e+00 898.0
56 TraesCS6B01G334500 chr5D 84.339 613 64 10 756 1363 98744715 98744130 6.960000e-159 571.0
57 TraesCS6B01G334500 chr1A 90.305 918 51 5 3178 4091 335905515 335906398 0.000000e+00 1168.0
58 TraesCS6B01G334500 chr1A 92.228 579 39 4 3518 4091 327383635 327383058 0.000000e+00 815.0
59 TraesCS6B01G334500 chr1A 91.364 579 40 6 3518 4091 335872027 335872600 0.000000e+00 784.0
60 TraesCS6B01G334500 chr1A 95.812 382 14 2 3178 3557 335871648 335872029 3.170000e-172 616.0
61 TraesCS6B01G334500 chr1A 94.764 382 17 3 3178 3557 327384013 327383633 5.350000e-165 592.0
62 TraesCS6B01G334500 chr3D 84.360 1055 122 16 1602 2630 596714479 596715516 0.000000e+00 994.0
63 TraesCS6B01G334500 chr1D 92.401 579 39 3 3518 4091 93821145 93821723 0.000000e+00 821.0
64 TraesCS6B01G334500 chr1D 96.023 352 12 2 3208 3557 93820796 93821147 6.960000e-159 571.0
65 TraesCS6B01G334500 chr1D 84.866 337 35 9 708 1043 439885112 439885433 5.990000e-85 326.0
66 TraesCS6B01G334500 chr1D 97.674 129 3 0 3178 3306 93820684 93820812 8.080000e-54 222.0
67 TraesCS6B01G334500 chr1D 97.115 104 3 0 6090 6193 119065058 119064955 6.380000e-40 176.0
68 TraesCS6B01G334500 chr1D 97.115 104 3 0 6090 6193 425511048 425511151 6.380000e-40 176.0
69 TraesCS6B01G334500 chr3A 90.596 436 31 4 709 1136 267366905 267366472 2.500000e-158 569.0
70 TraesCS6B01G334500 chr1B 93.923 362 17 2 2800 3161 288550544 288550188 5.460000e-150 542.0
71 TraesCS6B01G334500 chr1B 86.017 236 17 5 1357 1590 288551393 288551172 8.020000e-59 239.0
72 TraesCS6B01G334500 chr1B 81.188 303 42 10 769 1066 514930382 514930090 4.830000e-56 230.0
73 TraesCS6B01G334500 chr4D 98.077 104 2 0 6090 6193 356960524 356960421 1.370000e-41 182.0
74 TraesCS6B01G334500 chr4D 97.115 104 3 0 6090 6193 198006791 198006688 6.380000e-40 176.0
75 TraesCS6B01G334500 chr4D 97.115 104 3 0 6090 6193 223099302 223099405 6.380000e-40 176.0
76 TraesCS6B01G334500 chr6A 97.115 104 3 0 6090 6193 111484406 111484303 6.380000e-40 176.0
77 TraesCS6B01G334500 chr6A 97.115 104 3 0 6090 6193 537420099 537419996 6.380000e-40 176.0
78 TraesCS6B01G334500 chr7D 76.970 330 43 22 4155 4462 504382401 504382083 2.310000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G334500 chr6B 587738647 587744839 6192 False 11437.000000 11437 100.0000 1 6193 1 chr6B.!!$F3 6192
1 TraesCS6B01G334500 chr6B 185006571 185007574 1003 False 1415.000000 1415 92.2540 4592 5588 1 chr6B.!!$F1 996
2 TraesCS6B01G334500 chr6B 185001383 185002397 1014 False 774.500000 856 94.0095 3158 4593 2 chr6B.!!$F4 1435
3 TraesCS6B01G334500 chr6B 257979431 257979944 513 True 475.000000 475 83.4910 809 1330 1 chr6B.!!$R1 521
4 TraesCS6B01G334500 chr7B 336256540 336261926 5386 False 8870.000000 8870 96.4090 709 6091 1 chr7B.!!$F2 5382
5 TraesCS6B01G334500 chr7B 345985529 345994759 9230 False 1200.200000 2274 94.0242 708 6094 5 chr7B.!!$F4 5386
6 TraesCS6B01G334500 chr7B 20341199 20347869 6670 True 1180.666667 1925 94.0080 843 5872 3 chr7B.!!$R1 5029
7 TraesCS6B01G334500 chr7B 21042075 21042790 715 False 1160.000000 1160 95.8390 1 721 1 chr7B.!!$F1 720
8 TraesCS6B01G334500 chr7B 178421352 178422558 1206 False 362.500000 512 88.4315 1357 3161 2 chr7B.!!$F3 1804
9 TraesCS6B01G334500 chr3B 589657497 589662858 5361 True 8636.000000 8636 95.6950 708 6090 1 chr3B.!!$R1 5382
10 TraesCS6B01G334500 chr3B 455487339 455494964 7625 False 2861.666667 3875 95.4750 709 6091 3 chr3B.!!$F2 5382
11 TraesCS6B01G334500 chr3B 648412372 648413382 1010 False 1450.000000 1450 92.7790 4592 5588 1 chr3B.!!$F1 996
12 TraesCS6B01G334500 chr3B 702583680 702584390 710 True 1151.000000 1151 95.9270 1 710 1 chr3B.!!$R2 709
13 TraesCS6B01G334500 chr3B 648407301 648408315 1014 False 763.000000 861 93.5870 3158 4593 2 chr3B.!!$F3 1435
14 TraesCS6B01G334500 chr5B 463401308 463405895 4587 True 7542.000000 7542 96.3620 1518 6099 1 chr5B.!!$R1 4581
15 TraesCS6B01G334500 chr5B 22031381 22036233 4852 True 3736.000000 5531 96.3300 1518 6088 2 chr5B.!!$R2 4570
16 TraesCS6B01G334500 chr5B 389241026 389242026 1000 False 1397.000000 1397 91.9560 4592 5588 1 chr5B.!!$F1 996
17 TraesCS6B01G334500 chr5B 389235912 389236926 1014 False 772.000000 856 93.9070 3158 4593 2 chr5B.!!$F2 1435
18 TraesCS6B01G334500 chr4B 152079576 152081069 1493 True 1962.000000 1962 90.4540 4592 6091 1 chr4B.!!$R2 1499
19 TraesCS6B01G334500 chr4B 643420487 643421194 707 False 1155.000000 1155 96.0560 1 710 1 chr4B.!!$F1 709
20 TraesCS6B01G334500 chr4B 148359007 148359572 565 True 848.000000 848 93.6730 5532 6100 1 chr4B.!!$R1 568
21 TraesCS6B01G334500 chr2B 746308297 746311632 3335 True 1062.500000 1482 92.1900 4110 5588 2 chr2B.!!$R4 1478
22 TraesCS6B01G334500 chr2B 685735021 685735672 651 False 922.000000 922 92.1780 712 1363 1 chr2B.!!$F1 651
23 TraesCS6B01G334500 chr2B 654441674 654442231 557 True 872.000000 872 94.8210 5532 6091 1 chr2B.!!$R2 559
24 TraesCS6B01G334500 chr2B 184874799 184876077 1278 True 320.666667 346 83.3420 1602 2784 3 chr2B.!!$R3 1182
25 TraesCS6B01G334500 chr5A 337890805 337891739 934 True 1249.000000 1249 90.8320 3158 4091 1 chr5A.!!$R1 933
26 TraesCS6B01G334500 chr2A 347861798 347862736 938 False 1230.000000 1230 90.4150 3158 4091 1 chr2A.!!$F1 933
27 TraesCS6B01G334500 chr7A 354945428 354946366 938 False 1214.000000 1214 90.1380 3158 4091 1 chr7A.!!$F2 933
28 TraesCS6B01G334500 chr7A 314313630 314314331 701 False 1158.000000 1158 96.4440 8 710 1 chr7A.!!$F1 702
29 TraesCS6B01G334500 chr7A 423520769 423521475 706 False 1158.000000 1158 96.1970 1 710 1 chr7A.!!$F3 709
30 TraesCS6B01G334500 chr7A 436655545 436656246 701 True 1158.000000 1158 96.4440 8 710 1 chr7A.!!$R1 702
31 TraesCS6B01G334500 chr4A 526721712 526722409 697 False 1173.000000 1173 96.9960 12 710 1 chr4A.!!$F1 698
32 TraesCS6B01G334500 chr6D 14831662 14832363 701 True 1170.000000 1170 96.7280 8 710 1 chr6D.!!$R1 702
33 TraesCS6B01G334500 chr5D 534827350 534828051 701 True 1170.000000 1170 96.7280 8 710 1 chr5D.!!$R3 702
34 TraesCS6B01G334500 chr5D 249161730 249162376 646 True 898.000000 898 91.6160 709 1363 1 chr5D.!!$R2 654
35 TraesCS6B01G334500 chr5D 98744130 98744715 585 True 571.000000 571 84.3390 756 1363 1 chr5D.!!$R1 607
36 TraesCS6B01G334500 chr1A 335905515 335906398 883 False 1168.000000 1168 90.3050 3178 4091 1 chr1A.!!$F1 913
37 TraesCS6B01G334500 chr1A 327383058 327384013 955 True 703.500000 815 93.4960 3178 4091 2 chr1A.!!$R1 913
38 TraesCS6B01G334500 chr1A 335871648 335872600 952 False 700.000000 784 93.5880 3178 4091 2 chr1A.!!$F2 913
39 TraesCS6B01G334500 chr3D 596714479 596715516 1037 False 994.000000 994 84.3600 1602 2630 1 chr3D.!!$F1 1028
40 TraesCS6B01G334500 chr1D 93820684 93821723 1039 False 538.000000 821 95.3660 3178 4091 3 chr1D.!!$F3 913
41 TraesCS6B01G334500 chr1B 288550188 288551393 1205 True 390.500000 542 89.9700 1357 3161 2 chr1B.!!$R2 1804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 746 0.326264 AGGCTAGCCAACTCACCTTG 59.674 55.000 34.70 0.00 38.92 3.61 F
1087 1095 0.254178 CCACACCCCATTCCTCTCTG 59.746 60.000 0.00 0.00 0.00 3.35 F
2438 2820 0.536724 TATGCCTGCTTGCTCGAAGA 59.463 50.000 0.00 0.00 32.82 2.87 F
3078 3495 1.593209 GGCGTGAAGGTGTCGTGAA 60.593 57.895 0.00 0.00 0.00 3.18 F
3891 7311 0.826062 TGAGATCTTCCAGCATGCGA 59.174 50.000 13.01 3.05 31.97 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 1653 1.807755 CGGCGATGGTGTGATTGAGAT 60.808 52.381 0.0 0.00 0.00 2.75 R
2727 3116 3.473113 AAACTCCCATTGGGCATAAGT 57.527 42.857 17.6 12.13 43.94 2.24 R
3866 7286 0.251354 GCTGGAAGATCTCACTGGCA 59.749 55.000 0.0 0.00 34.07 4.92 R
4746 12767 0.036294 GGTCTCCCTTCCCTTGAACG 60.036 60.000 0.0 0.00 0.00 3.95 R
5528 13831 1.328680 CCGACCGATGCAATTTCTCAG 59.671 52.381 0.0 0.00 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
402 405 9.489084 TTTGTCATATAGTAAATCGCTAGCAAT 57.511 29.630 16.45 0.00 0.00 3.56
430 433 7.554835 AGCATGTAAAAACATATTACTCCCGAA 59.445 33.333 0.00 0.00 34.94 4.30
507 510 5.962433 TCGAATTGACTTGGTAAGGTAGAG 58.038 41.667 0.00 0.00 0.00 2.43
572 575 2.235650 CCTCTCTGCTCAGTGGAATTCA 59.764 50.000 7.93 0.00 0.00 2.57
673 676 4.884668 AGGTTCGTAACTTCATCCAAGA 57.115 40.909 0.00 0.00 35.82 3.02
743 746 0.326264 AGGCTAGCCAACTCACCTTG 59.674 55.000 34.70 0.00 38.92 3.61
847 850 5.619086 CGGTTAAATCATTTTTCACCTCGCT 60.619 40.000 0.00 0.00 30.17 4.93
943 946 2.347490 GGTGAGCCTTTCCTCGCA 59.653 61.111 5.28 0.00 42.63 5.10
1087 1095 0.254178 CCACACCCCATTCCTCTCTG 59.746 60.000 0.00 0.00 0.00 3.35
1170 1181 5.192923 TCTCTTCTAGCTAACTCCTCCTTCT 59.807 44.000 0.00 0.00 0.00 2.85
1278 1290 1.371758 GCACGAGTCGACAGAAGCA 60.372 57.895 21.50 0.00 0.00 3.91
1597 1612 3.227276 CGGCTGCCTAGATCCGGT 61.227 66.667 17.92 0.00 38.35 5.28
1638 1653 2.531771 TCCAGGTTGGTTGACTCGATA 58.468 47.619 0.00 0.00 39.03 2.92
1649 1664 5.127031 TGGTTGACTCGATATCTCAATCACA 59.873 40.000 12.69 8.53 31.51 3.58
1847 1954 6.685116 GCTCTTAGATCCAGCAGTAACTCAAT 60.685 42.308 0.00 0.00 33.06 2.57
1852 1959 2.302733 TCCAGCAGTAACTCAATGCAGA 59.697 45.455 0.00 0.00 42.45 4.26
1893 2000 2.759973 TCGCCTCCTTCGCCTCAT 60.760 61.111 0.00 0.00 0.00 2.90
1942 2049 0.615850 CTGTTTCTCCCACTCCCCTC 59.384 60.000 0.00 0.00 0.00 4.30
2001 2109 3.231818 CTCCTATGGGTTCGGTGTATCT 58.768 50.000 0.00 0.00 0.00 1.98
2106 2236 3.159472 TGTCTGCAATTTGGCTGATTCT 58.841 40.909 0.00 0.00 42.48 2.40
2138 2268 9.832445 GTATTCTTGTTCTTTATGGGAGATACA 57.168 33.333 0.00 0.00 0.00 2.29
2250 2380 4.003648 AGTATGTGCAGTTTACTTGCTCC 58.996 43.478 0.00 0.00 0.00 4.70
2259 2390 5.731126 GCAGTTTACTTGCTCCGTTTTTACA 60.731 40.000 0.00 0.00 0.00 2.41
2299 2435 0.921166 ACATGCATGACCCAGATCCA 59.079 50.000 32.75 0.00 0.00 3.41
2438 2820 0.536724 TATGCCTGCTTGCTCGAAGA 59.463 50.000 0.00 0.00 32.82 2.87
2539 2922 2.139888 AAAATGCATCACACCGCGCA 62.140 50.000 8.75 0.00 39.01 6.09
2638 3021 6.765989 TGCCAACTAACTGATACATGGTTATC 59.234 38.462 0.00 0.00 0.00 1.75
2639 3022 6.765989 GCCAACTAACTGATACATGGTTATCA 59.234 38.462 0.00 1.76 0.00 2.15
2831 3222 7.095910 CAGATCTCATGTTTGTCTAAGTCACT 58.904 38.462 0.00 0.00 0.00 3.41
2982 3398 9.305925 GTTTCAATTTGATCACTTTTGAGACTT 57.694 29.630 18.41 0.00 34.35 3.01
3078 3495 1.593209 GGCGTGAAGGTGTCGTGAA 60.593 57.895 0.00 0.00 0.00 3.18
3293 5981 4.925068 AGTAGTTTTTCTTGCAGCTTGTG 58.075 39.130 0.00 0.00 0.00 3.33
3455 6669 4.377431 GCTCTTCTTTACATTGGTGACACG 60.377 45.833 0.00 0.00 42.67 4.49
3699 6989 6.182627 TCAGCCTCATTTGACAAACAGATAT 58.817 36.000 1.94 0.00 0.00 1.63
3865 7285 2.105128 GCTGCTCGGACGCACTAT 59.895 61.111 0.00 0.00 35.74 2.12
3866 7286 1.519455 GCTGCTCGGACGCACTATT 60.519 57.895 0.00 0.00 35.74 1.73
3891 7311 0.826062 TGAGATCTTCCAGCATGCGA 59.174 50.000 13.01 3.05 31.97 5.10
4070 7490 1.975407 GAGCATGCAACAGCTGGGT 60.975 57.895 21.98 4.04 42.04 4.51
4079 7499 3.644606 CAGCTGGGTGCCTGTCCT 61.645 66.667 5.57 0.00 44.23 3.85
4287 7727 3.117663 TGTTTTCCTTGTGTAGAGGGCTT 60.118 43.478 0.00 0.00 34.93 4.35
4423 8780 1.523095 GTGTCGTGCAGTTCTGAGTTC 59.477 52.381 3.84 0.00 0.00 3.01
4553 9393 8.859236 TGAATCTTCATCTCTGATGTTTTCTT 57.141 30.769 7.33 0.00 31.01 2.52
4572 9412 1.358725 TTCGAAAATGGAGCGCGGAG 61.359 55.000 8.83 0.00 0.00 4.63
4663 11955 2.641197 GTGAATGGCACCGGTCTTT 58.359 52.632 2.59 0.00 41.78 2.52
4746 12767 3.192001 TGCTGCTTGAGATTGATTTCCAC 59.808 43.478 0.00 0.00 0.00 4.02
4863 12901 1.001974 CCGGGACTGATGACAAGAACA 59.998 52.381 0.00 0.00 0.00 3.18
5161 13453 5.512753 TTTTGCACATGATACAACTGTGT 57.487 34.783 0.00 0.00 41.76 3.72
5320 13615 0.392461 GGACTCGGTGCCATTTAGCA 60.392 55.000 0.00 0.00 41.46 3.49
5418 13718 8.638685 ATGTGAAAGACATTTTCAAAAGAGTG 57.361 30.769 4.10 0.00 43.20 3.51
5467 13770 5.003804 ACGAGTATTGAAGTCCTTGCAAAT 58.996 37.500 0.00 0.00 0.00 2.32
5509 13812 1.271840 ATGGCTTTGGCGGGTCTCTA 61.272 55.000 0.00 0.00 39.81 2.43
5517 13820 4.732106 CGGGTCTCTACGCCATTC 57.268 61.111 0.00 0.00 35.19 2.67
5541 13844 1.403249 GCAACGGCTGAGAAATTGCAT 60.403 47.619 11.72 0.00 44.01 3.96
5834 14157 2.019984 GGCCAGGTTTCTCATCATGAC 58.980 52.381 0.00 0.00 0.00 3.06
5860 14184 7.302350 ACCATGTTTTCAAACTTGCTAAAAC 57.698 32.000 11.15 10.38 40.62 2.43
6100 14425 6.537660 AGCGGGTCAACTAGTAATTCATAAAC 59.462 38.462 0.00 0.00 0.00 2.01
6101 14426 6.238293 GCGGGTCAACTAGTAATTCATAAACC 60.238 42.308 0.00 0.00 0.00 3.27
6102 14427 6.819649 CGGGTCAACTAGTAATTCATAAACCA 59.180 38.462 0.00 0.00 0.00 3.67
6103 14428 7.497909 CGGGTCAACTAGTAATTCATAAACCAT 59.502 37.037 0.00 0.00 0.00 3.55
6104 14429 8.621286 GGGTCAACTAGTAATTCATAAACCATG 58.379 37.037 0.00 0.00 35.81 3.66
6105 14430 8.621286 GGTCAACTAGTAATTCATAAACCATGG 58.379 37.037 11.19 11.19 35.16 3.66
6106 14431 9.174166 GTCAACTAGTAATTCATAAACCATGGT 57.826 33.333 13.00 13.00 35.16 3.55
6107 14432 9.747898 TCAACTAGTAATTCATAAACCATGGTT 57.252 29.630 24.86 24.86 40.45 3.67
6108 14433 9.787532 CAACTAGTAATTCATAAACCATGGTTG 57.212 33.333 30.44 19.07 38.47 3.77
6118 14443 2.897780 CCATGGTTGGCAAAACACG 58.102 52.632 2.57 0.00 35.30 4.49
6119 14444 1.220817 CCATGGTTGGCAAAACACGC 61.221 55.000 2.57 0.00 35.30 5.34
6120 14445 0.249405 CATGGTTGGCAAAACACGCT 60.249 50.000 0.00 0.00 35.30 5.07
6121 14446 0.031994 ATGGTTGGCAAAACACGCTC 59.968 50.000 0.00 0.00 35.30 5.03
6122 14447 1.034838 TGGTTGGCAAAACACGCTCT 61.035 50.000 0.00 0.00 0.00 4.09
6123 14448 0.317854 GGTTGGCAAAACACGCTCTC 60.318 55.000 0.00 0.00 0.00 3.20
6124 14449 0.317854 GTTGGCAAAACACGCTCTCC 60.318 55.000 0.00 0.00 0.00 3.71
6125 14450 0.465460 TTGGCAAAACACGCTCTCCT 60.465 50.000 0.00 0.00 0.00 3.69
6126 14451 0.884704 TGGCAAAACACGCTCTCCTC 60.885 55.000 0.00 0.00 0.00 3.71
6127 14452 1.493311 GCAAAACACGCTCTCCTCG 59.507 57.895 0.00 0.00 0.00 4.63
6128 14453 1.493311 CAAAACACGCTCTCCTCGC 59.507 57.895 0.00 0.00 0.00 5.03
6129 14454 1.668151 AAAACACGCTCTCCTCGCC 60.668 57.895 0.00 0.00 0.00 5.54
6130 14455 3.591254 AAACACGCTCTCCTCGCCC 62.591 63.158 0.00 0.00 0.00 6.13
6134 14459 4.129737 CGCTCTCCTCGCCCGAAA 62.130 66.667 0.00 0.00 0.00 3.46
6135 14460 2.501610 GCTCTCCTCGCCCGAAAT 59.498 61.111 0.00 0.00 0.00 2.17
6136 14461 1.740285 GCTCTCCTCGCCCGAAATA 59.260 57.895 0.00 0.00 0.00 1.40
6137 14462 0.319125 GCTCTCCTCGCCCGAAATAG 60.319 60.000 0.00 0.00 0.00 1.73
6138 14463 0.319125 CTCTCCTCGCCCGAAATAGC 60.319 60.000 0.00 0.00 0.00 2.97
6139 14464 0.755698 TCTCCTCGCCCGAAATAGCT 60.756 55.000 0.00 0.00 0.00 3.32
6140 14465 0.319125 CTCCTCGCCCGAAATAGCTC 60.319 60.000 0.00 0.00 0.00 4.09
6141 14466 1.661821 CCTCGCCCGAAATAGCTCG 60.662 63.158 0.00 0.00 38.58 5.03
6142 14467 1.065928 CTCGCCCGAAATAGCTCGT 59.934 57.895 0.00 0.00 37.11 4.18
6143 14468 1.209275 CTCGCCCGAAATAGCTCGTG 61.209 60.000 0.00 0.00 37.11 4.35
6144 14469 2.871427 CGCCCGAAATAGCTCGTGC 61.871 63.158 0.07 0.07 38.61 5.34
6145 14470 2.534903 GCCCGAAATAGCTCGTGCC 61.535 63.158 5.73 0.00 36.38 5.01
6146 14471 1.887707 CCCGAAATAGCTCGTGCCC 60.888 63.158 5.73 0.00 40.80 5.36
6147 14472 1.153449 CCGAAATAGCTCGTGCCCA 60.153 57.895 5.73 0.00 40.80 5.36
6148 14473 1.429148 CCGAAATAGCTCGTGCCCAC 61.429 60.000 5.73 0.00 40.80 4.61
6149 14474 0.460284 CGAAATAGCTCGTGCCCACT 60.460 55.000 5.73 0.00 40.80 4.00
6150 14475 1.202371 CGAAATAGCTCGTGCCCACTA 60.202 52.381 5.73 0.00 40.80 2.74
6151 14476 2.545952 CGAAATAGCTCGTGCCCACTAT 60.546 50.000 5.73 0.00 40.80 2.12
6152 14477 3.467803 GAAATAGCTCGTGCCCACTATT 58.532 45.455 5.73 1.18 40.80 1.73
6153 14478 3.560636 AATAGCTCGTGCCCACTATTT 57.439 42.857 5.73 0.00 40.80 1.40
6154 14479 2.596904 TAGCTCGTGCCCACTATTTC 57.403 50.000 5.73 0.00 40.80 2.17
6155 14480 0.613260 AGCTCGTGCCCACTATTTCA 59.387 50.000 5.73 0.00 40.80 2.69
6156 14481 1.003118 AGCTCGTGCCCACTATTTCAA 59.997 47.619 5.73 0.00 40.80 2.69
6157 14482 1.130561 GCTCGTGCCCACTATTTCAAC 59.869 52.381 0.00 0.00 0.00 3.18
6158 14483 2.422597 CTCGTGCCCACTATTTCAACA 58.577 47.619 0.00 0.00 0.00 3.33
6159 14484 2.147958 TCGTGCCCACTATTTCAACAC 58.852 47.619 0.00 0.00 0.00 3.32
6160 14485 1.876799 CGTGCCCACTATTTCAACACA 59.123 47.619 0.00 0.00 0.00 3.72
6161 14486 2.487762 CGTGCCCACTATTTCAACACAT 59.512 45.455 0.00 0.00 0.00 3.21
6162 14487 3.670359 CGTGCCCACTATTTCAACACATG 60.670 47.826 0.00 0.00 0.00 3.21
6163 14488 2.230992 TGCCCACTATTTCAACACATGC 59.769 45.455 0.00 0.00 0.00 4.06
6164 14489 2.493278 GCCCACTATTTCAACACATGCT 59.507 45.455 0.00 0.00 0.00 3.79
6165 14490 3.428045 GCCCACTATTTCAACACATGCTC 60.428 47.826 0.00 0.00 0.00 4.26
6166 14491 4.012374 CCCACTATTTCAACACATGCTCT 58.988 43.478 0.00 0.00 0.00 4.09
6167 14492 4.095483 CCCACTATTTCAACACATGCTCTC 59.905 45.833 0.00 0.00 0.00 3.20
6168 14493 4.095483 CCACTATTTCAACACATGCTCTCC 59.905 45.833 0.00 0.00 0.00 3.71
6169 14494 4.940046 CACTATTTCAACACATGCTCTCCT 59.060 41.667 0.00 0.00 0.00 3.69
6170 14495 5.064452 CACTATTTCAACACATGCTCTCCTC 59.936 44.000 0.00 0.00 0.00 3.71
6171 14496 2.084610 TTCAACACATGCTCTCCTCG 57.915 50.000 0.00 0.00 0.00 4.63
6172 14497 0.390340 TCAACACATGCTCTCCTCGC 60.390 55.000 0.00 0.00 0.00 5.03
6173 14498 1.078848 AACACATGCTCTCCTCGCC 60.079 57.895 0.00 0.00 0.00 5.54
6174 14499 2.202987 CACATGCTCTCCTCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
6175 14500 3.842923 ACATGCTCTCCTCGCCCG 61.843 66.667 0.00 0.00 0.00 6.13
6176 14501 3.531207 CATGCTCTCCTCGCCCGA 61.531 66.667 0.00 0.00 0.00 5.14
6177 14502 2.759973 ATGCTCTCCTCGCCCGAA 60.760 61.111 0.00 0.00 0.00 4.30
6178 14503 2.359169 ATGCTCTCCTCGCCCGAAA 61.359 57.895 0.00 0.00 0.00 3.46
6179 14504 1.690219 ATGCTCTCCTCGCCCGAAAT 61.690 55.000 0.00 0.00 0.00 2.17
6180 14505 1.592939 GCTCTCCTCGCCCGAAATC 60.593 63.158 0.00 0.00 0.00 2.17
6181 14506 1.299468 CTCTCCTCGCCCGAAATCG 60.299 63.158 0.00 0.00 39.44 3.34
6182 14507 2.962253 CTCCTCGCCCGAAATCGC 60.962 66.667 0.00 0.00 38.18 4.58
6183 14508 3.432051 CTCCTCGCCCGAAATCGCT 62.432 63.158 0.00 0.00 38.18 4.93
6184 14509 2.962253 CCTCGCCCGAAATCGCTC 60.962 66.667 0.00 0.00 38.18 5.03
6185 14510 3.323136 CTCGCCCGAAATCGCTCG 61.323 66.667 0.00 3.27 38.18 5.03
6192 14517 4.223964 GAAATCGCTCGCGCCCAC 62.224 66.667 0.00 0.00 39.59 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
402 405 7.011950 CGGGAGTAATATGTTTTTACATGCTCA 59.988 37.037 0.00 0.00 33.02 4.26
418 421 5.477291 GGAGAGATGATGTTCGGGAGTAATA 59.523 44.000 0.00 0.00 0.00 0.98
490 493 3.170717 CCACCTCTACCTTACCAAGTCA 58.829 50.000 0.00 0.00 0.00 3.41
507 510 1.153349 GGGAGAACGAGCATCCACC 60.153 63.158 0.00 0.00 34.62 4.61
572 575 2.241176 TCTCCCATTTATTTGCTCGGGT 59.759 45.455 0.00 0.00 35.08 5.28
627 630 3.809832 CCTCGATGTACAATGGACCAATC 59.190 47.826 0.00 0.00 0.00 2.67
743 746 0.464554 CCAATCGGGGAAGCCTTCTC 60.465 60.000 4.15 0.00 0.00 2.87
1003 1006 3.065306 CTAGGGTTGGTGCGGTCA 58.935 61.111 0.00 0.00 0.00 4.02
1087 1095 0.761323 GGAAGGAGTAGGGAGGAGGC 60.761 65.000 0.00 0.00 0.00 4.70
1170 1181 1.153765 CGGCTGACGCAGAGATCAA 60.154 57.895 10.46 0.00 38.10 2.57
1262 1274 0.889638 TCCTGCTTCTGTCGACTCGT 60.890 55.000 17.92 0.00 0.00 4.18
1597 1612 2.041922 CGGAGTGGGAGGGGATCA 60.042 66.667 0.00 0.00 0.00 2.92
1638 1653 1.807755 CGGCGATGGTGTGATTGAGAT 60.808 52.381 0.00 0.00 0.00 2.75
1672 1687 2.281484 GCGGCTTGGTCCTTGACA 60.281 61.111 0.00 0.00 33.68 3.58
1692 1707 2.203640 AGGAGGACACTGTGGCGA 60.204 61.111 13.09 0.00 0.00 5.54
1847 1954 2.727544 GCAACCGGCTTTTCTGCA 59.272 55.556 0.00 0.00 40.25 4.41
1852 1959 4.025401 CGAGCGCAACCGGCTTTT 62.025 61.111 11.47 0.00 41.72 2.27
2138 2268 3.679389 CCAGTGAGCTACATCCAAACTT 58.321 45.455 0.00 0.00 0.00 2.66
2250 2380 7.722795 AAATTCCAAAATCCCTGTAAAAACG 57.277 32.000 0.00 0.00 0.00 3.60
2639 3022 4.147321 ACTGCTCAACATTGTTCCTCAAT 58.853 39.130 0.00 0.00 46.32 2.57
2727 3116 3.473113 AAACTCCCATTGGGCATAAGT 57.527 42.857 17.60 12.13 43.94 2.24
3293 5981 7.801783 CCGATTTTGACAAGAAAAACTACTACC 59.198 37.037 0.00 0.00 29.78 3.18
3455 6669 4.430007 TGATTCAACGCTGTAGGTCATAC 58.570 43.478 0.00 0.00 34.72 2.39
3699 6989 8.291740 ACGTATATATATTCTGCGTTGTGTGTA 58.708 33.333 0.00 0.00 0.00 2.90
3749 7164 4.743057 TCAGATAGTGTGGATGAAGGTG 57.257 45.455 0.00 0.00 0.00 4.00
3861 7281 3.776969 TGGAAGATCTCACTGGCAATAGT 59.223 43.478 0.00 0.00 0.00 2.12
3865 7285 1.339438 GCTGGAAGATCTCACTGGCAA 60.339 52.381 0.00 0.00 34.07 4.52
3866 7286 0.251354 GCTGGAAGATCTCACTGGCA 59.749 55.000 0.00 0.00 34.07 4.92
4070 7490 0.324738 CCCAGTAGAGAGGACAGGCA 60.325 60.000 0.00 0.00 0.00 4.75
4079 7499 2.254152 AATGAGGCACCCAGTAGAGA 57.746 50.000 0.00 0.00 0.00 3.10
4287 7727 2.282251 ACCTGTCTGCCTCGTCGA 60.282 61.111 0.00 0.00 0.00 4.20
4423 8780 1.648191 CAACACACACGCACACAAAAG 59.352 47.619 0.00 0.00 0.00 2.27
4553 9393 1.358725 CTCCGCGCTCCATTTTCGAA 61.359 55.000 5.56 0.00 0.00 3.71
4663 11955 4.443457 GGTGCTCCTGCTCATTAGTATGAA 60.443 45.833 0.00 0.00 40.17 2.57
4746 12767 0.036294 GGTCTCCCTTCCCTTGAACG 60.036 60.000 0.00 0.00 0.00 3.95
4863 12901 6.233434 TGTTGACATACTCATCTTGCTCTTT 58.767 36.000 0.00 0.00 0.00 2.52
5140 13432 5.299028 AGAACACAGTTGTATCATGTGCAAA 59.701 36.000 4.56 0.00 46.49 3.68
5418 13718 8.685838 TGTAGAAAGCCCATATATTAAACCAC 57.314 34.615 0.00 0.00 0.00 4.16
5528 13831 1.328680 CCGACCGATGCAATTTCTCAG 59.671 52.381 0.00 0.00 0.00 3.35
5834 14157 6.900568 TTAGCAAGTTTGAAAACATGGTTG 57.099 33.333 17.56 9.97 43.16 3.77
5860 14184 6.024552 AGTAAAGTTGGCATGGTTGTATTG 57.975 37.500 0.00 0.00 0.00 1.90
6076 14400 6.238293 GGTTTATGAATTACTAGTTGACCCGC 60.238 42.308 0.00 0.00 0.00 6.13
6101 14426 0.249405 AGCGTGTTTTGCCAACCATG 60.249 50.000 0.00 0.00 0.00 3.66
6102 14427 0.031994 GAGCGTGTTTTGCCAACCAT 59.968 50.000 0.00 0.00 0.00 3.55
6103 14428 1.034838 AGAGCGTGTTTTGCCAACCA 61.035 50.000 0.00 0.00 0.00 3.67
6104 14429 0.317854 GAGAGCGTGTTTTGCCAACC 60.318 55.000 0.00 0.00 0.00 3.77
6105 14430 0.317854 GGAGAGCGTGTTTTGCCAAC 60.318 55.000 0.00 0.00 0.00 3.77
6106 14431 0.465460 AGGAGAGCGTGTTTTGCCAA 60.465 50.000 0.00 0.00 0.00 4.52
6107 14432 0.884704 GAGGAGAGCGTGTTTTGCCA 60.885 55.000 0.00 0.00 0.00 4.92
6108 14433 1.869690 GAGGAGAGCGTGTTTTGCC 59.130 57.895 0.00 0.00 0.00 4.52
6109 14434 1.493311 CGAGGAGAGCGTGTTTTGC 59.507 57.895 0.00 0.00 0.00 3.68
6110 14435 1.493311 GCGAGGAGAGCGTGTTTTG 59.507 57.895 0.00 0.00 0.00 2.44
6111 14436 1.668151 GGCGAGGAGAGCGTGTTTT 60.668 57.895 0.00 0.00 35.00 2.43
6112 14437 2.048127 GGCGAGGAGAGCGTGTTT 60.048 61.111 0.00 0.00 35.00 2.83
6113 14438 4.070552 GGGCGAGGAGAGCGTGTT 62.071 66.667 0.00 0.00 35.00 3.32
6117 14442 2.071844 TATTTCGGGCGAGGAGAGCG 62.072 60.000 0.00 0.00 35.00 5.03
6118 14443 0.319125 CTATTTCGGGCGAGGAGAGC 60.319 60.000 0.00 0.00 0.00 4.09
6119 14444 0.319125 GCTATTTCGGGCGAGGAGAG 60.319 60.000 0.00 0.00 0.00 3.20
6120 14445 0.755698 AGCTATTTCGGGCGAGGAGA 60.756 55.000 0.00 0.00 0.00 3.71
6121 14446 0.319125 GAGCTATTTCGGGCGAGGAG 60.319 60.000 0.00 0.00 0.00 3.69
6122 14447 1.740285 GAGCTATTTCGGGCGAGGA 59.260 57.895 0.00 0.00 0.00 3.71
6123 14448 1.661821 CGAGCTATTTCGGGCGAGG 60.662 63.158 0.00 0.00 36.95 4.63
6124 14449 1.065928 ACGAGCTATTTCGGGCGAG 59.934 57.895 0.00 0.00 44.57 5.03
6125 14450 1.226859 CACGAGCTATTTCGGGCGA 60.227 57.895 0.00 0.00 44.57 5.54
6126 14451 3.309675 CACGAGCTATTTCGGGCG 58.690 61.111 0.00 0.00 44.57 6.13
6128 14453 1.887707 GGGCACGAGCTATTTCGGG 60.888 63.158 4.48 0.00 46.44 5.14
6129 14454 1.153449 TGGGCACGAGCTATTTCGG 60.153 57.895 4.48 0.00 44.57 4.30
6130 14455 0.460284 AGTGGGCACGAGCTATTTCG 60.460 55.000 4.48 0.00 45.70 3.46
6131 14456 2.596904 TAGTGGGCACGAGCTATTTC 57.403 50.000 4.48 0.00 41.70 2.17
6132 14457 3.560636 AATAGTGGGCACGAGCTATTT 57.439 42.857 4.48 0.00 41.70 1.40
6133 14458 3.118408 TGAAATAGTGGGCACGAGCTATT 60.118 43.478 4.48 4.93 41.70 1.73
6134 14459 2.434336 TGAAATAGTGGGCACGAGCTAT 59.566 45.455 4.48 0.00 41.70 2.97
6135 14460 1.828595 TGAAATAGTGGGCACGAGCTA 59.171 47.619 4.48 0.00 41.70 3.32
6136 14461 0.613260 TGAAATAGTGGGCACGAGCT 59.387 50.000 4.48 0.00 41.70 4.09
6137 14462 1.130561 GTTGAAATAGTGGGCACGAGC 59.869 52.381 0.00 0.00 41.10 5.03
6138 14463 2.159627 GTGTTGAAATAGTGGGCACGAG 59.840 50.000 0.00 0.00 36.20 4.18
6139 14464 2.147958 GTGTTGAAATAGTGGGCACGA 58.852 47.619 0.00 0.00 36.20 4.35
6140 14465 1.876799 TGTGTTGAAATAGTGGGCACG 59.123 47.619 0.00 0.00 36.20 5.34
6141 14466 3.836949 CATGTGTTGAAATAGTGGGCAC 58.163 45.455 0.00 0.00 0.00 5.01
6142 14467 2.230992 GCATGTGTTGAAATAGTGGGCA 59.769 45.455 0.00 0.00 0.00 5.36
6143 14468 2.493278 AGCATGTGTTGAAATAGTGGGC 59.507 45.455 0.00 0.00 0.00 5.36
6144 14469 4.012374 AGAGCATGTGTTGAAATAGTGGG 58.988 43.478 0.00 0.00 0.00 4.61
6145 14470 4.095483 GGAGAGCATGTGTTGAAATAGTGG 59.905 45.833 0.00 0.00 0.00 4.00
6146 14471 4.940046 AGGAGAGCATGTGTTGAAATAGTG 59.060 41.667 0.00 0.00 0.00 2.74
6147 14472 5.171339 AGGAGAGCATGTGTTGAAATAGT 57.829 39.130 0.00 0.00 0.00 2.12
6148 14473 4.269603 CGAGGAGAGCATGTGTTGAAATAG 59.730 45.833 0.00 0.00 0.00 1.73
6149 14474 4.183865 CGAGGAGAGCATGTGTTGAAATA 58.816 43.478 0.00 0.00 0.00 1.40
6150 14475 3.005554 CGAGGAGAGCATGTGTTGAAAT 58.994 45.455 0.00 0.00 0.00 2.17
6151 14476 2.416747 CGAGGAGAGCATGTGTTGAAA 58.583 47.619 0.00 0.00 0.00 2.69
6152 14477 1.941209 GCGAGGAGAGCATGTGTTGAA 60.941 52.381 0.00 0.00 34.19 2.69
6153 14478 0.390340 GCGAGGAGAGCATGTGTTGA 60.390 55.000 0.00 0.00 34.19 3.18
6154 14479 1.364626 GGCGAGGAGAGCATGTGTTG 61.365 60.000 0.00 0.00 36.08 3.33
6155 14480 1.078848 GGCGAGGAGAGCATGTGTT 60.079 57.895 0.00 0.00 36.08 3.32
6156 14481 2.581354 GGCGAGGAGAGCATGTGT 59.419 61.111 0.00 0.00 36.08 3.72
6157 14482 2.202987 GGGCGAGGAGAGCATGTG 60.203 66.667 0.00 0.00 36.08 3.21
6158 14483 3.842923 CGGGCGAGGAGAGCATGT 61.843 66.667 0.00 0.00 36.08 3.21
6159 14484 2.578163 TTTCGGGCGAGGAGAGCATG 62.578 60.000 0.00 0.00 36.08 4.06
6160 14485 1.690219 ATTTCGGGCGAGGAGAGCAT 61.690 55.000 0.00 0.00 36.08 3.79
6161 14486 2.298158 GATTTCGGGCGAGGAGAGCA 62.298 60.000 0.00 0.00 36.08 4.26
6162 14487 1.592939 GATTTCGGGCGAGGAGAGC 60.593 63.158 0.00 0.00 0.00 4.09
6163 14488 1.299468 CGATTTCGGGCGAGGAGAG 60.299 63.158 0.00 0.00 35.37 3.20
6164 14489 2.805546 CGATTTCGGGCGAGGAGA 59.194 61.111 0.00 0.00 35.37 3.71
6165 14490 2.962253 GCGATTTCGGGCGAGGAG 60.962 66.667 1.75 0.00 40.23 3.69
6166 14491 3.426117 GAGCGATTTCGGGCGAGGA 62.426 63.158 1.75 0.00 40.23 3.71
6167 14492 2.962253 GAGCGATTTCGGGCGAGG 60.962 66.667 1.75 0.00 40.23 4.63
6168 14493 3.323136 CGAGCGATTTCGGGCGAG 61.323 66.667 1.75 0.00 40.23 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.