Multiple sequence alignment - TraesCS6B01G333600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G333600 chr6B 100.000 4700 0 0 1 4700 585574018 585569319 0.000000e+00 8680.0
1 TraesCS6B01G333600 chr6B 82.946 129 10 7 4227 4355 209587413 209587529 6.430000e-19 106.0
2 TraesCS6B01G333600 chr6B 85.294 102 11 1 4263 4364 183308298 183308395 8.320000e-18 102.0
3 TraesCS6B01G333600 chr6A 90.264 3636 235 52 2 3596 538060185 538056628 0.000000e+00 4643.0
4 TraesCS6B01G333600 chr6A 88.400 250 24 5 3814 4061 538056501 538056255 3.560000e-76 296.0
5 TraesCS6B01G333600 chr6A 100.000 150 0 0 3663 3812 80820113 80819964 1.290000e-70 278.0
6 TraesCS6B01G333600 chr6A 88.667 150 9 2 4060 4201 538054464 538054315 4.830000e-40 176.0
7 TraesCS6B01G333600 chr6A 96.471 85 3 0 4366 4450 538050736 538050652 1.760000e-29 141.0
8 TraesCS6B01G333600 chr6D 92.072 3103 142 40 613 3663 391943135 391940085 0.000000e+00 4272.0
9 TraesCS6B01G333600 chr6D 88.032 376 31 7 3812 4177 391940095 391939724 2.600000e-117 433.0
10 TraesCS6B01G333600 chr6D 93.358 271 17 1 1 270 391943963 391943693 2.630000e-107 399.0
11 TraesCS6B01G333600 chr6D 89.837 246 14 5 4459 4700 391939296 391939058 5.910000e-79 305.0
12 TraesCS6B01G333600 chr6D 87.013 231 23 4 310 534 391943363 391943134 2.170000e-63 254.0
13 TraesCS6B01G333600 chr6D 92.929 99 7 0 4363 4461 391939624 391939526 1.360000e-30 145.0
14 TraesCS6B01G333600 chr5B 100.000 154 0 0 3661 3814 502027043 502027196 7.700000e-73 285.0
15 TraesCS6B01G333600 chr5B 99.351 154 0 1 3663 3816 511067124 511066972 1.290000e-70 278.0
16 TraesCS6B01G333600 chr7A 100.000 152 0 0 3661 3812 161728333 161728484 9.960000e-72 281.0
17 TraesCS6B01G333600 chr5A 100.000 150 0 0 3663 3812 575594080 575593931 1.290000e-70 278.0
18 TraesCS6B01G333600 chr3A 100.000 150 0 0 3663 3812 637292072 637291923 1.290000e-70 278.0
19 TraesCS6B01G333600 chr3A 80.282 142 16 5 4229 4370 323438494 323438623 3.870000e-16 97.1
20 TraesCS6B01G333600 chr3A 81.651 109 14 5 4262 4368 102622301 102622405 8.380000e-13 86.1
21 TraesCS6B01G333600 chr2D 100.000 150 0 0 3663 3812 357697146 357696997 1.290000e-70 278.0
22 TraesCS6B01G333600 chr2D 100.000 150 0 0 3663 3812 377156039 377155890 1.290000e-70 278.0
23 TraesCS6B01G333600 chr2B 100.000 150 0 0 3663 3812 62547535 62547684 1.290000e-70 278.0
24 TraesCS6B01G333600 chr7B 84.286 140 9 7 4227 4366 437670515 437670389 1.780000e-24 124.0
25 TraesCS6B01G333600 chr7D 84.483 116 8 5 4227 4342 421407802 421407697 6.430000e-19 106.0
26 TraesCS6B01G333600 chr1D 83.333 120 13 3 4224 4343 277352379 277352491 2.310000e-18 104.0
27 TraesCS6B01G333600 chr1A 81.560 141 13 9 4227 4366 117188275 117188147 2.310000e-18 104.0
28 TraesCS6B01G333600 chr3B 79.720 143 12 10 4229 4370 353994450 353994324 2.330000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G333600 chr6B 585569319 585574018 4699 True 8680 8680 100.000000 1 4700 1 chr6B.!!$R1 4699
1 TraesCS6B01G333600 chr6A 538050652 538060185 9533 True 1314 4643 90.950500 2 4450 4 chr6A.!!$R2 4448
2 TraesCS6B01G333600 chr6D 391939058 391943963 4905 True 968 4272 90.540167 1 4700 6 chr6D.!!$R1 4699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 895 0.407139 AGAAGGAGGCATTTGCTGGT 59.593 50.000 2.12 0.0 41.7 4.00 F
835 1135 1.223211 GAAGAGAGCAAGAGGGGGC 59.777 63.158 0.00 0.0 0.0 5.80 F
1962 2282 0.535102 CAGGTATGATGGGTTCGGGC 60.535 60.000 0.00 0.0 0.0 6.13 F
3114 3468 0.033366 TCGATCACATATGCACGGGG 59.967 55.000 1.58 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 2071 0.882927 GCGTATTAGGATGGCGGCAA 60.883 55.0 18.31 0.0 0.00 4.52 R
2605 2937 0.038801 GCCTTGCAAGAGCTTCCAAC 60.039 55.0 28.05 1.9 42.74 3.77 R
3248 3602 0.034337 TGGCACCCAAACGACTAGAC 59.966 55.0 0.00 0.0 0.00 2.59 R
4157 6385 0.242017 ACCGACGCAGGTTGTACTAC 59.758 55.0 0.00 0.0 43.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 155 1.374252 CCCGAACCTCCGTTGTGAG 60.374 63.158 0.00 0.00 30.30 3.51
186 188 1.199624 CTGCAAAGTTGTTTCACGGC 58.800 50.000 0.00 0.00 0.00 5.68
187 189 0.528017 TGCAAAGTTGTTTCACGGCA 59.472 45.000 0.00 0.00 0.00 5.69
189 191 1.555477 CAAAGTTGTTTCACGGCACC 58.445 50.000 0.00 0.00 0.00 5.01
206 208 2.159338 GCACCACATACATTGGCTTCTG 60.159 50.000 0.00 0.00 37.69 3.02
216 218 3.573538 ACATTGGCTTCTGTGTTGCATAA 59.426 39.130 0.00 0.00 0.00 1.90
219 221 4.177165 TGGCTTCTGTGTTGCATAAATG 57.823 40.909 0.00 0.00 0.00 2.32
235 237 9.932207 TTGCATAAATGAGTGATTTTCTCAATT 57.068 25.926 0.00 0.00 43.65 2.32
243 245 8.746922 TGAGTGATTTTCTCAATTATTTGCAC 57.253 30.769 0.00 0.00 38.71 4.57
299 556 8.638685 AAAAATGTAGCATGTATCAGCAATTC 57.361 30.769 0.00 0.00 0.00 2.17
301 558 5.996669 TGTAGCATGTATCAGCAATTCTG 57.003 39.130 0.00 0.11 44.21 3.02
324 616 8.902806 TCTGAGCAGTTTGAAGAAAAATCTTAA 58.097 29.630 0.00 0.00 0.00 1.85
325 617 9.520204 CTGAGCAGTTTGAAGAAAAATCTTAAA 57.480 29.630 0.00 0.00 0.00 1.52
342 634 8.532977 AATCTTAAAACAATGTTGCATACACC 57.467 30.769 0.00 0.00 40.19 4.16
356 648 7.918033 TGTTGCATACACCGGAAAAATATATTG 59.082 33.333 9.46 0.00 0.00 1.90
366 658 6.018588 CCGGAAAAATATATTGTAGCACACGA 60.019 38.462 0.00 0.00 0.00 4.35
367 659 6.844279 CGGAAAAATATATTGTAGCACACGAC 59.156 38.462 0.00 0.00 0.00 4.34
381 673 3.550561 CACACGACATTTTATTGTGCGT 58.449 40.909 0.00 0.00 35.20 5.24
383 675 4.781026 CACACGACATTTTATTGTGCGTAG 59.219 41.667 0.00 0.00 35.20 3.51
402 694 5.868257 CGTAGCAGAATCAATGTTTAAGCA 58.132 37.500 0.00 0.00 0.00 3.91
414 706 2.269172 GTTTAAGCAGTCGACTAGGGC 58.731 52.381 19.57 17.69 0.00 5.19
422 714 2.279073 CGACTAGGGCCTCCTCCA 59.721 66.667 10.74 0.00 43.66 3.86
432 727 1.381872 CCTCCTCCACCTGTCCGAT 60.382 63.158 0.00 0.00 0.00 4.18
433 728 1.680522 CCTCCTCCACCTGTCCGATG 61.681 65.000 0.00 0.00 0.00 3.84
464 759 3.066203 CGGGCCCTAAAATACATTGTCAC 59.934 47.826 22.43 0.00 0.00 3.67
504 801 5.712917 ACACAAAACATTTGGGATATACCGT 59.287 36.000 11.73 0.00 40.11 4.83
535 832 4.437794 GCGTGATCAGCAATCTTCAAATCA 60.438 41.667 0.00 0.00 35.24 2.57
541 838 6.115450 TCAGCAATCTTCAAATCATTCGAG 57.885 37.500 0.00 0.00 0.00 4.04
546 843 7.965107 AGCAATCTTCAAATCATTCGAGTTAAC 59.035 33.333 0.00 0.00 0.00 2.01
547 844 7.965107 GCAATCTTCAAATCATTCGAGTTAACT 59.035 33.333 8.13 8.13 0.00 2.24
548 845 9.270576 CAATCTTCAAATCATTCGAGTTAACTG 57.729 33.333 14.14 5.81 0.00 3.16
549 846 8.777865 ATCTTCAAATCATTCGAGTTAACTGA 57.222 30.769 14.14 8.16 0.00 3.41
550 847 8.601845 TCTTCAAATCATTCGAGTTAACTGAA 57.398 30.769 14.14 16.13 0.00 3.02
551 848 9.051679 TCTTCAAATCATTCGAGTTAACTGAAA 57.948 29.630 14.14 7.27 0.00 2.69
558 855 8.781067 TCATTCGAGTTAACTGAAAACATTTG 57.219 30.769 14.14 10.44 0.00 2.32
596 893 3.672767 AAAAGAAGGAGGCATTTGCTG 57.327 42.857 2.12 0.00 41.70 4.41
598 895 0.407139 AGAAGGAGGCATTTGCTGGT 59.593 50.000 2.12 0.00 41.70 4.00
691 989 2.196925 CCTCTCCAGATACCGCGCT 61.197 63.158 5.56 0.00 0.00 5.92
706 1004 4.265056 GCTCCACACCAACCCCGT 62.265 66.667 0.00 0.00 0.00 5.28
714 1012 3.622826 CCAACCCCGTCAGTCCGT 61.623 66.667 0.00 0.00 0.00 4.69
724 1022 3.991051 CAGTCCGTCGTGGCACCT 61.991 66.667 12.86 0.00 37.80 4.00
763 1061 2.036089 CTCCCTACTAAATCCACCGCTC 59.964 54.545 0.00 0.00 0.00 5.03
835 1135 1.223211 GAAGAGAGCAAGAGGGGGC 59.777 63.158 0.00 0.00 0.00 5.80
836 1136 1.539869 AAGAGAGCAAGAGGGGGCA 60.540 57.895 0.00 0.00 0.00 5.36
837 1137 1.560866 AAGAGAGCAAGAGGGGGCAG 61.561 60.000 0.00 0.00 0.00 4.85
839 1139 4.811364 GAGCAAGAGGGGGCAGGC 62.811 72.222 0.00 0.00 0.00 4.85
852 1157 2.435693 GCAGGCTGGGACGATAGGT 61.436 63.158 17.64 0.00 43.77 3.08
894 1199 1.785321 CAGCGCGGTAATTTCACGT 59.215 52.632 11.92 0.00 0.00 4.49
915 1220 3.011818 TCCAGATTACGCAACTACTCGA 58.988 45.455 0.00 0.00 0.00 4.04
927 1232 2.600122 CTACTCGACAGCGTCTGGGC 62.600 65.000 10.80 2.99 38.98 5.36
1489 1804 4.275936 GTCAAATCGATTGGGATTACTGGG 59.724 45.833 12.25 0.00 39.62 4.45
1499 1814 3.050564 TGGGATTACTGGGGAGTAGGAAT 60.051 47.826 0.00 0.00 31.44 3.01
1522 1837 4.262617 GGGGAAGAGAAAAGGTGTATGAC 58.737 47.826 0.00 0.00 0.00 3.06
1722 2037 8.432110 AAATTTCCTTAGAAAACGCAAAACAT 57.568 26.923 0.00 0.00 44.91 2.71
1730 2045 5.278604 AGAAAACGCAAAACATAACCAGAC 58.721 37.500 0.00 0.00 0.00 3.51
1766 2081 3.674753 GTGCATATATTTTTGCCGCCATC 59.325 43.478 0.00 0.00 38.08 3.51
1837 2152 1.541147 CAGTTGAATGGTCGGTGCATT 59.459 47.619 0.00 0.00 0.00 3.56
1864 2179 5.127356 CCTAGTTGGTTAGTTCTCGATCCTT 59.873 44.000 0.00 0.00 0.00 3.36
1895 2215 4.072131 TGAGTACTGAAAATGGCCAAGTC 58.928 43.478 10.96 8.24 0.00 3.01
1900 2220 1.340889 TGAAAATGGCCAAGTCACTGC 59.659 47.619 10.96 0.00 0.00 4.40
1902 2222 1.708341 AAATGGCCAAGTCACTGCTT 58.292 45.000 10.96 0.00 0.00 3.91
1918 2238 7.041098 AGTCACTGCTTAAAGTTCTGTATTTGG 60.041 37.037 0.00 0.00 0.00 3.28
1926 2246 6.824305 AAAGTTCTGTATTTGGGACTGATG 57.176 37.500 0.00 0.00 0.00 3.07
1930 2250 6.440647 AGTTCTGTATTTGGGACTGATGAGTA 59.559 38.462 0.00 0.00 30.16 2.59
1947 2267 4.905429 TGAGTAAATACATGTGTGCAGGT 58.095 39.130 9.11 0.00 42.66 4.00
1962 2282 0.535102 CAGGTATGATGGGTTCGGGC 60.535 60.000 0.00 0.00 0.00 6.13
2028 2348 4.272504 TCATTCTTCGACAGGTTTGTGTTC 59.727 41.667 0.00 0.00 37.76 3.18
2094 2415 4.334481 TCTTGATGCTTGTACTGATGCATG 59.666 41.667 2.46 0.00 44.80 4.06
2276 2597 9.965902 AATAACTTGATCCTTCTGATTTGTACT 57.034 29.630 0.00 0.00 32.41 2.73
2277 2598 7.678947 AACTTGATCCTTCTGATTTGTACTG 57.321 36.000 0.00 0.00 32.41 2.74
2278 2599 6.773638 ACTTGATCCTTCTGATTTGTACTGT 58.226 36.000 0.00 0.00 32.41 3.55
2279 2600 7.907389 ACTTGATCCTTCTGATTTGTACTGTA 58.093 34.615 0.00 0.00 32.41 2.74
2291 2612 7.083858 TGATTTGTACTGTAGCTTTCATTTGC 58.916 34.615 0.00 0.00 0.00 3.68
2304 2633 7.786030 AGCTTTCATTTGCTACTAGTGATCTA 58.214 34.615 5.39 0.00 37.81 1.98
2317 2646 6.963322 ACTAGTGATCTAAATGGGAAGCTTT 58.037 36.000 0.00 0.00 0.00 3.51
2331 2660 6.480763 TGGGAAGCTTTGACATATGAGTTTA 58.519 36.000 10.38 0.00 0.00 2.01
2366 2695 2.189594 TTGAGACCCAAGTGCTGATG 57.810 50.000 0.00 0.00 0.00 3.07
2382 2711 7.701445 AGTGCTGATGTTATCTTCTTTTATGC 58.299 34.615 0.00 0.00 0.00 3.14
2395 2724 6.595716 TCTTCTTTTATGCTTTCCAGAGTAGC 59.404 38.462 0.00 0.00 35.50 3.58
2437 2766 1.231296 TGCGGCGATTAGTTGTTGCA 61.231 50.000 12.98 0.00 0.00 4.08
2500 2829 6.945636 TTTGAGTTGACCCTATTTCTCCTA 57.054 37.500 0.00 0.00 0.00 2.94
2520 2849 5.550403 TCCTAGTGGAATAGTTTGTCCCTTT 59.450 40.000 0.00 0.00 39.87 3.11
2605 2937 0.039256 CTGTTTGGTTGGATGTGCCG 60.039 55.000 0.00 0.00 40.66 5.69
2710 3042 8.918202 ACACAATGGTAACTTCTTGATCTTTA 57.082 30.769 0.00 0.00 37.61 1.85
2723 3055 9.405587 CTTCTTGATCTTTAAATTTTTGCCGTA 57.594 29.630 0.00 0.00 0.00 4.02
2837 3178 8.926710 GGACTTCAATAAAGATCCATATACACG 58.073 37.037 0.00 0.00 38.44 4.49
2840 3181 8.534333 TTCAATAAAGATCCATATACACGAGC 57.466 34.615 0.00 0.00 0.00 5.03
2855 3196 3.699538 ACACGAGCTGTATCACAGGAATA 59.300 43.478 8.31 0.00 46.01 1.75
2966 3310 1.335051 GCCTTTTCGAAACTCAGCACC 60.335 52.381 10.79 0.00 0.00 5.01
3017 3361 4.730657 CAAATGCTGATGTCAGAGTTTCC 58.269 43.478 13.94 0.00 46.59 3.13
3055 3409 5.712917 TCTCCATAATAAACACCAAACCCAC 59.287 40.000 0.00 0.00 0.00 4.61
3114 3468 0.033366 TCGATCACATATGCACGGGG 59.967 55.000 1.58 0.00 0.00 5.73
3281 3635 2.871633 GGGTGCCACACAAAATTTTCTG 59.128 45.455 0.00 2.32 35.86 3.02
3358 3712 3.190744 ACAAGATCGAGAGCTTTGTCGTA 59.809 43.478 12.18 2.76 34.42 3.43
3449 3803 4.220382 TGAATCCTTTTTGCACCATGTAGG 59.780 41.667 0.00 0.00 45.67 3.18
3558 3912 3.788227 AATGGCGGAATAATGGAGCTA 57.212 42.857 0.00 0.00 0.00 3.32
3559 3913 2.839486 TGGCGGAATAATGGAGCTAG 57.161 50.000 0.00 0.00 0.00 3.42
3560 3914 1.270839 TGGCGGAATAATGGAGCTAGC 60.271 52.381 6.62 6.62 0.00 3.42
3561 3915 1.002544 GGCGGAATAATGGAGCTAGCT 59.997 52.381 19.45 19.45 0.00 3.32
3566 3920 5.520649 GCGGAATAATGGAGCTAGCTAATAC 59.479 44.000 19.38 9.15 0.00 1.89
3579 3933 7.569240 AGCTAGCTAATACAAAGATCCTTGTT 58.431 34.615 17.69 1.20 40.08 2.83
3600 3954 1.613925 GGTTGAAAGAACCCTGGCTTC 59.386 52.381 0.00 0.00 34.26 3.86
3638 4064 7.595819 TGAAAACAATATGTCACCTTCCTTT 57.404 32.000 0.00 0.00 0.00 3.11
3663 4089 3.122480 TGCCTCCTTGGATTGGATAAGA 58.878 45.455 0.00 0.00 38.35 2.10
3664 4090 3.137176 TGCCTCCTTGGATTGGATAAGAG 59.863 47.826 0.00 0.00 38.35 2.85
3666 4092 3.137176 CCTCCTTGGATTGGATAAGAGCA 59.863 47.826 0.00 0.00 38.35 4.26
3668 4094 3.782523 TCCTTGGATTGGATAAGAGCAGT 59.217 43.478 0.00 0.00 0.00 4.40
3669 4095 3.881688 CCTTGGATTGGATAAGAGCAGTG 59.118 47.826 0.00 0.00 0.00 3.66
3670 4096 2.923121 TGGATTGGATAAGAGCAGTGC 58.077 47.619 7.13 7.13 0.00 4.40
3671 4097 2.507058 TGGATTGGATAAGAGCAGTGCT 59.493 45.455 19.86 19.86 43.88 4.40
3672 4098 3.711190 TGGATTGGATAAGAGCAGTGCTA 59.289 43.478 19.77 2.38 39.88 3.49
3673 4099 4.349048 TGGATTGGATAAGAGCAGTGCTAT 59.651 41.667 19.77 13.17 39.88 2.97
3674 4100 4.694509 GGATTGGATAAGAGCAGTGCTATG 59.305 45.833 19.77 0.00 39.88 2.23
3675 4101 3.758755 TGGATAAGAGCAGTGCTATGG 57.241 47.619 19.77 0.00 39.88 2.74
3676 4102 2.369860 TGGATAAGAGCAGTGCTATGGG 59.630 50.000 19.77 0.00 39.88 4.00
3677 4103 2.289945 GGATAAGAGCAGTGCTATGGGG 60.290 54.545 19.77 0.00 39.88 4.96
3678 4104 2.174685 TAAGAGCAGTGCTATGGGGA 57.825 50.000 19.77 0.00 39.88 4.81
3679 4105 0.543749 AAGAGCAGTGCTATGGGGAC 59.456 55.000 19.77 3.33 39.88 4.46
3680 4106 1.227380 GAGCAGTGCTATGGGGACG 60.227 63.158 19.77 0.00 39.88 4.79
3681 4107 1.676678 GAGCAGTGCTATGGGGACGA 61.677 60.000 19.77 0.00 39.88 4.20
3682 4108 1.050988 AGCAGTGCTATGGGGACGAT 61.051 55.000 18.11 0.00 41.32 3.73
3683 4109 0.679505 GCAGTGCTATGGGGACGATA 59.320 55.000 8.18 0.00 41.32 2.92
3684 4110 1.070134 GCAGTGCTATGGGGACGATAA 59.930 52.381 8.18 0.00 41.32 1.75
3685 4111 2.484770 GCAGTGCTATGGGGACGATAAA 60.485 50.000 8.18 0.00 41.32 1.40
3686 4112 3.393800 CAGTGCTATGGGGACGATAAAG 58.606 50.000 0.00 0.00 41.32 1.85
3687 4113 3.039011 AGTGCTATGGGGACGATAAAGT 58.961 45.455 0.00 0.00 41.32 2.66
3688 4114 3.454812 AGTGCTATGGGGACGATAAAGTT 59.545 43.478 0.00 0.00 41.32 2.66
3689 4115 4.080526 AGTGCTATGGGGACGATAAAGTTT 60.081 41.667 0.00 0.00 41.32 2.66
3690 4116 4.035208 GTGCTATGGGGACGATAAAGTTTG 59.965 45.833 0.00 0.00 0.00 2.93
3691 4117 3.564225 GCTATGGGGACGATAAAGTTTGG 59.436 47.826 0.00 0.00 0.00 3.28
3692 4118 4.685030 GCTATGGGGACGATAAAGTTTGGA 60.685 45.833 0.00 0.00 0.00 3.53
3693 4119 3.062122 TGGGGACGATAAAGTTTGGAC 57.938 47.619 0.00 0.00 0.00 4.02
3694 4120 2.004733 GGGGACGATAAAGTTTGGACG 58.995 52.381 0.00 4.14 0.00 4.79
3695 4121 2.354003 GGGGACGATAAAGTTTGGACGA 60.354 50.000 14.33 0.00 0.00 4.20
3696 4122 2.669924 GGGACGATAAAGTTTGGACGAC 59.330 50.000 14.33 9.77 0.00 4.34
3697 4123 3.582780 GGACGATAAAGTTTGGACGACT 58.417 45.455 14.33 0.00 0.00 4.18
3698 4124 3.992427 GGACGATAAAGTTTGGACGACTT 59.008 43.478 14.33 0.00 38.92 3.01
3699 4125 4.143179 GGACGATAAAGTTTGGACGACTTG 60.143 45.833 14.33 0.00 37.41 3.16
3700 4126 4.374399 ACGATAAAGTTTGGACGACTTGT 58.626 39.130 14.33 0.00 37.41 3.16
3701 4127 4.210537 ACGATAAAGTTTGGACGACTTGTG 59.789 41.667 14.33 0.00 37.41 3.33
3702 4128 2.844122 AAAGTTTGGACGACTTGTGC 57.156 45.000 0.00 0.00 37.41 4.57
3706 4132 2.809010 TGGACGACTTGTGCACGA 59.191 55.556 13.13 9.87 44.74 4.35
3707 4133 1.590525 TGGACGACTTGTGCACGAC 60.591 57.895 13.13 0.00 44.74 4.34
3708 4134 2.645510 GGACGACTTGTGCACGACG 61.646 63.158 13.13 13.55 39.04 5.12
3709 4135 2.645510 GACGACTTGTGCACGACGG 61.646 63.158 18.23 6.87 0.00 4.79
3710 4136 2.657296 CGACTTGTGCACGACGGT 60.657 61.111 13.13 5.45 0.00 4.83
3711 4137 2.235016 CGACTTGTGCACGACGGTT 61.235 57.895 13.13 0.00 0.00 4.44
3712 4138 0.935831 CGACTTGTGCACGACGGTTA 60.936 55.000 13.13 0.00 0.00 2.85
3713 4139 1.210870 GACTTGTGCACGACGGTTAA 58.789 50.000 13.13 0.00 0.00 2.01
3714 4140 1.593933 GACTTGTGCACGACGGTTAAA 59.406 47.619 13.13 0.00 0.00 1.52
3715 4141 2.215196 ACTTGTGCACGACGGTTAAAT 58.785 42.857 13.13 0.00 0.00 1.40
3716 4142 2.222445 ACTTGTGCACGACGGTTAAATC 59.778 45.455 13.13 0.00 0.00 2.17
3717 4143 1.149987 TGTGCACGACGGTTAAATCC 58.850 50.000 13.13 0.00 0.00 3.01
3718 4144 1.149987 GTGCACGACGGTTAAATCCA 58.850 50.000 0.00 0.00 0.00 3.41
3719 4145 1.127951 GTGCACGACGGTTAAATCCAG 59.872 52.381 0.00 0.00 0.00 3.86
3720 4146 0.096454 GCACGACGGTTAAATCCAGC 59.904 55.000 0.00 0.00 0.00 4.85
3721 4147 0.725117 CACGACGGTTAAATCCAGCC 59.275 55.000 0.00 0.00 0.00 4.85
3722 4148 0.738412 ACGACGGTTAAATCCAGCCG 60.738 55.000 0.00 0.00 46.53 5.52
3723 4149 0.458889 CGACGGTTAAATCCAGCCGA 60.459 55.000 8.87 0.00 44.21 5.54
3724 4150 1.729284 GACGGTTAAATCCAGCCGAA 58.271 50.000 8.87 0.00 44.21 4.30
3725 4151 1.664151 GACGGTTAAATCCAGCCGAAG 59.336 52.381 8.87 0.00 44.21 3.79
3726 4152 1.276989 ACGGTTAAATCCAGCCGAAGA 59.723 47.619 8.87 0.00 44.21 2.87
3727 4153 2.289819 ACGGTTAAATCCAGCCGAAGAA 60.290 45.455 8.87 0.00 44.21 2.52
3728 4154 2.943033 CGGTTAAATCCAGCCGAAGAAT 59.057 45.455 0.00 0.00 44.21 2.40
3729 4155 3.242739 CGGTTAAATCCAGCCGAAGAATG 60.243 47.826 0.00 0.00 44.21 2.67
3730 4156 3.694566 GGTTAAATCCAGCCGAAGAATGT 59.305 43.478 0.00 0.00 0.00 2.71
3731 4157 4.201920 GGTTAAATCCAGCCGAAGAATGTC 60.202 45.833 0.00 0.00 0.00 3.06
3732 4158 1.656652 AATCCAGCCGAAGAATGTCG 58.343 50.000 0.00 0.00 40.77 4.35
3733 4159 0.824109 ATCCAGCCGAAGAATGTCGA 59.176 50.000 0.00 0.00 43.86 4.20
3734 4160 0.173481 TCCAGCCGAAGAATGTCGAG 59.827 55.000 0.00 0.00 43.86 4.04
3735 4161 1.424493 CCAGCCGAAGAATGTCGAGC 61.424 60.000 0.00 0.00 43.86 5.03
3736 4162 0.737367 CAGCCGAAGAATGTCGAGCA 60.737 55.000 9.54 0.00 43.86 4.26
3737 4163 0.737715 AGCCGAAGAATGTCGAGCAC 60.738 55.000 9.54 0.00 43.86 4.40
3738 4164 1.014044 GCCGAAGAATGTCGAGCACA 61.014 55.000 0.00 0.00 43.86 4.57
3739 4165 0.994995 CCGAAGAATGTCGAGCACAG 59.005 55.000 0.00 0.00 43.86 3.66
3740 4166 0.368227 CGAAGAATGTCGAGCACAGC 59.632 55.000 0.00 0.00 43.86 4.40
3741 4167 0.723981 GAAGAATGTCGAGCACAGCC 59.276 55.000 0.00 0.00 38.85 4.85
3742 4168 0.674895 AAGAATGTCGAGCACAGCCC 60.675 55.000 0.00 0.00 38.85 5.19
3743 4169 1.375908 GAATGTCGAGCACAGCCCA 60.376 57.895 0.00 0.00 38.85 5.36
3744 4170 1.364626 GAATGTCGAGCACAGCCCAG 61.365 60.000 0.00 0.00 38.85 4.45
3745 4171 3.965539 ATGTCGAGCACAGCCCAGC 62.966 63.158 0.00 0.00 38.85 4.85
3746 4172 4.687215 GTCGAGCACAGCCCAGCA 62.687 66.667 0.00 0.00 0.00 4.41
3747 4173 4.383861 TCGAGCACAGCCCAGCAG 62.384 66.667 0.00 0.00 0.00 4.24
3767 4193 3.620785 GCCGCTGGATCCCTCGAT 61.621 66.667 20.26 0.00 0.00 3.59
3768 4194 2.653702 CCGCTGGATCCCTCGATC 59.346 66.667 20.26 0.00 43.73 3.69
3769 4195 2.256764 CGCTGGATCCCTCGATCG 59.743 66.667 9.36 9.36 45.16 3.69
3770 4196 2.556459 CGCTGGATCCCTCGATCGT 61.556 63.158 15.94 0.00 45.16 3.73
3771 4197 1.006805 GCTGGATCCCTCGATCGTG 60.007 63.158 15.94 12.87 45.16 4.35
3772 4198 1.006805 CTGGATCCCTCGATCGTGC 60.007 63.158 15.94 0.70 45.16 5.34
3773 4199 1.738346 CTGGATCCCTCGATCGTGCA 61.738 60.000 15.94 5.85 45.16 4.57
3774 4200 1.006805 GGATCCCTCGATCGTGCAG 60.007 63.158 15.94 5.10 45.16 4.41
3775 4201 1.736586 GATCCCTCGATCGTGCAGT 59.263 57.895 15.94 0.00 35.83 4.40
3776 4202 0.103208 GATCCCTCGATCGTGCAGTT 59.897 55.000 15.94 2.24 35.83 3.16
3777 4203 1.337071 GATCCCTCGATCGTGCAGTTA 59.663 52.381 15.94 0.00 35.83 2.24
3778 4204 1.399714 TCCCTCGATCGTGCAGTTAT 58.600 50.000 15.94 0.00 0.00 1.89
3779 4205 1.337071 TCCCTCGATCGTGCAGTTATC 59.663 52.381 15.94 0.00 0.00 1.75
3780 4206 1.399572 CCTCGATCGTGCAGTTATCG 58.600 55.000 15.94 15.56 42.90 2.92
3781 4207 1.268589 CCTCGATCGTGCAGTTATCGT 60.269 52.381 15.94 0.00 42.32 3.73
3782 4208 2.037649 CTCGATCGTGCAGTTATCGTC 58.962 52.381 15.94 5.94 42.32 4.20
3783 4209 1.121240 CGATCGTGCAGTTATCGTCC 58.879 55.000 7.03 0.00 38.12 4.79
3784 4210 1.533129 CGATCGTGCAGTTATCGTCCA 60.533 52.381 7.03 0.00 38.12 4.02
3785 4211 2.536365 GATCGTGCAGTTATCGTCCAA 58.464 47.619 0.00 0.00 0.00 3.53
3786 4212 2.442212 TCGTGCAGTTATCGTCCAAA 57.558 45.000 0.00 0.00 0.00 3.28
3787 4213 2.063266 TCGTGCAGTTATCGTCCAAAC 58.937 47.619 0.00 0.00 0.00 2.93
3788 4214 1.795872 CGTGCAGTTATCGTCCAAACA 59.204 47.619 0.00 0.00 0.00 2.83
3789 4215 2.411031 CGTGCAGTTATCGTCCAAACAC 60.411 50.000 0.00 0.00 0.00 3.32
3790 4216 2.806244 GTGCAGTTATCGTCCAAACACT 59.194 45.455 0.00 0.00 0.00 3.55
3791 4217 2.805671 TGCAGTTATCGTCCAAACACTG 59.194 45.455 0.00 0.00 35.71 3.66
3792 4218 2.806244 GCAGTTATCGTCCAAACACTGT 59.194 45.455 0.00 0.00 35.17 3.55
3793 4219 3.120649 GCAGTTATCGTCCAAACACTGTC 60.121 47.826 0.00 0.00 35.17 3.51
3794 4220 3.121279 CAGTTATCGTCCAAACACTGTCG 59.879 47.826 0.00 0.00 0.00 4.35
3795 4221 3.054878 GTTATCGTCCAAACACTGTCGT 58.945 45.455 0.00 0.00 0.00 4.34
3796 4222 1.497991 ATCGTCCAAACACTGTCGTG 58.502 50.000 0.00 0.00 46.63 4.35
3805 4231 2.676744 CACTGTCGTGTGTGAAGCA 58.323 52.632 0.00 0.00 36.38 3.91
3806 4232 1.220529 CACTGTCGTGTGTGAAGCAT 58.779 50.000 0.00 0.00 36.38 3.79
3807 4233 1.599071 CACTGTCGTGTGTGAAGCATT 59.401 47.619 0.00 0.00 36.38 3.56
3808 4234 2.032054 CACTGTCGTGTGTGAAGCATTT 59.968 45.455 0.00 0.00 36.38 2.32
3809 4235 2.682856 ACTGTCGTGTGTGAAGCATTTT 59.317 40.909 0.00 0.00 0.00 1.82
3810 4236 3.242739 ACTGTCGTGTGTGAAGCATTTTC 60.243 43.478 0.00 0.00 0.00 2.29
3811 4237 2.286125 TGTCGTGTGTGAAGCATTTTCG 60.286 45.455 0.00 0.00 0.00 3.46
3812 4238 2.033236 GTCGTGTGTGAAGCATTTTCGA 60.033 45.455 0.00 0.00 0.00 3.71
3813 4239 2.805671 TCGTGTGTGAAGCATTTTCGAT 59.194 40.909 0.00 0.00 0.00 3.59
3814 4240 3.249799 TCGTGTGTGAAGCATTTTCGATT 59.750 39.130 0.00 0.00 0.00 3.34
3815 4241 3.358700 CGTGTGTGAAGCATTTTCGATTG 59.641 43.478 0.00 0.00 0.00 2.67
3816 4242 3.670055 GTGTGTGAAGCATTTTCGATTGG 59.330 43.478 0.00 0.00 0.00 3.16
3817 4243 3.567585 TGTGTGAAGCATTTTCGATTGGA 59.432 39.130 0.00 0.00 0.00 3.53
3818 4244 4.218200 TGTGTGAAGCATTTTCGATTGGAT 59.782 37.500 0.00 0.00 0.00 3.41
3819 4245 5.414144 TGTGTGAAGCATTTTCGATTGGATA 59.586 36.000 0.00 0.00 0.00 2.59
3820 4246 6.072230 TGTGTGAAGCATTTTCGATTGGATAA 60.072 34.615 0.00 0.00 0.00 1.75
3821 4247 6.470235 GTGTGAAGCATTTTCGATTGGATAAG 59.530 38.462 0.00 0.00 0.00 1.73
3822 4248 5.456822 GTGAAGCATTTTCGATTGGATAAGC 59.543 40.000 0.00 0.00 0.00 3.09
3823 4249 4.574599 AGCATTTTCGATTGGATAAGCC 57.425 40.909 0.00 0.00 37.10 4.35
3824 4250 3.319122 AGCATTTTCGATTGGATAAGCCC 59.681 43.478 0.00 0.00 34.97 5.19
3825 4251 3.552890 GCATTTTCGATTGGATAAGCCCC 60.553 47.826 0.00 0.00 34.97 5.80
3826 4252 1.961793 TTTCGATTGGATAAGCCCCG 58.038 50.000 0.00 0.00 34.97 5.73
3827 4253 0.107831 TTCGATTGGATAAGCCCCGG 59.892 55.000 0.00 0.00 34.97 5.73
3844 4270 1.525442 GGGTCATAGGGGTTGGTCG 59.475 63.158 0.00 0.00 0.00 4.79
4053 4481 3.531538 GCCAAATGTCTCGTCCTGAATA 58.468 45.455 0.00 0.00 0.00 1.75
4058 4486 6.761242 CCAAATGTCTCGTCCTGAATATGTTA 59.239 38.462 0.00 0.00 0.00 2.41
4131 6359 0.254462 TGATGGCTTATCCGGTGCAA 59.746 50.000 0.00 0.00 37.80 4.08
4155 6383 0.601311 CCTACGGCCATAGCAAGCTC 60.601 60.000 2.24 0.00 42.56 4.09
4156 6384 0.104855 CTACGGCCATAGCAAGCTCA 59.895 55.000 2.24 0.00 42.56 4.26
4157 6385 0.104855 TACGGCCATAGCAAGCTCAG 59.895 55.000 2.24 0.00 42.56 3.35
4159 6387 0.104855 CGGCCATAGCAAGCTCAGTA 59.895 55.000 2.24 0.00 42.56 2.74
4194 6426 2.602878 GGTGCAGCAAGTGATCAATTG 58.397 47.619 27.15 27.15 39.18 2.32
4202 9269 7.916977 TGCAGCAAGTGATCAATTGTTATTATC 59.083 33.333 30.13 15.75 38.50 1.75
4206 9273 7.864379 GCAAGTGATCAATTGTTATTATCCAGG 59.136 37.037 30.13 7.10 38.50 4.45
4227 9294 3.297736 GGTAGGGCAGCTACGGATATAT 58.702 50.000 0.00 0.00 0.00 0.86
4229 9296 2.821437 AGGGCAGCTACGGATATATGT 58.179 47.619 0.00 0.00 0.00 2.29
4231 9298 3.195825 AGGGCAGCTACGGATATATGTTC 59.804 47.826 0.00 0.00 0.00 3.18
4233 9300 4.401519 GGGCAGCTACGGATATATGTTCTA 59.598 45.833 0.00 0.00 0.00 2.10
4234 9301 5.105473 GGGCAGCTACGGATATATGTTCTAA 60.105 44.000 0.00 0.00 0.00 2.10
4235 9302 5.805994 GGCAGCTACGGATATATGTTCTAAC 59.194 44.000 0.00 0.00 0.00 2.34
4236 9303 6.350277 GGCAGCTACGGATATATGTTCTAACT 60.350 42.308 0.00 0.00 0.00 2.24
4238 9305 8.407064 GCAGCTACGGATATATGTTCTAACTAT 58.593 37.037 0.00 0.00 0.00 2.12
4239 9306 9.938670 CAGCTACGGATATATGTTCTAACTATC 57.061 37.037 0.00 0.00 0.00 2.08
4274 9342 5.008415 CGGATGTAGGAGTAAATAGACACGT 59.992 44.000 0.00 0.00 0.00 4.49
4311 9379 7.854534 TGTTCGCTCATTTCAATCAGTATATG 58.145 34.615 0.00 0.00 0.00 1.78
4318 9386 8.625786 TCATTTCAATCAGTATATGGTCCATG 57.374 34.615 15.10 0.00 0.00 3.66
4329 9397 9.730705 CAGTATATGGTCCATGTTGAAATATCT 57.269 33.333 15.10 1.76 0.00 1.98
4337 9405 9.736023 GGTCCATGTTGAAATATCTAAAACATC 57.264 33.333 0.00 0.00 38.94 3.06
4369 9437 8.478877 AGTATTTGTGAATAGAGGGAGTAGTTG 58.521 37.037 0.00 0.00 0.00 3.16
4444 10094 4.132122 ACAAGGGGAAAGAATGTGGATT 57.868 40.909 0.00 0.00 0.00 3.01
4453 10103 6.494835 GGGAAAGAATGTGGATTGGCTATAAT 59.505 38.462 0.00 0.00 0.00 1.28
4454 10104 7.373493 GGAAAGAATGTGGATTGGCTATAATG 58.627 38.462 0.00 0.00 0.00 1.90
4481 10363 4.033932 GCTCGAATTGTTGCCAAACTTTTT 59.966 37.500 0.00 0.00 37.19 1.94
4490 10372 5.129485 TGTTGCCAAACTTTTTCCTGGATAA 59.871 36.000 0.00 0.00 37.19 1.75
4499 10381 4.748277 TTTTCCTGGATAACGTAGGGAG 57.252 45.455 0.00 0.00 32.39 4.30
4509 10392 0.324368 ACGTAGGGAGACTCATGGCA 60.324 55.000 4.53 0.00 0.00 4.92
4566 10449 1.202915 TCAAAGTGCATTCTGGCAGGA 60.203 47.619 15.73 6.22 45.96 3.86
4567 10450 1.068055 CAAAGTGCATTCTGGCAGGAC 60.068 52.381 15.73 0.81 45.96 3.85
4594 10477 9.965824 CTGTTAAAAAGGTGTGATACAAAATCT 57.034 29.630 0.00 0.00 0.00 2.40
4597 10480 5.391312 AAAGGTGTGATACAAAATCTGCC 57.609 39.130 0.00 0.00 0.00 4.85
4613 10496 2.750350 CCTCTTCGGGTGGCTTGT 59.250 61.111 0.00 0.00 0.00 3.16
4622 10505 4.373116 GTGGCTTGTCGCGAGGGA 62.373 66.667 10.24 0.00 40.44 4.20
4623 10506 4.373116 TGGCTTGTCGCGAGGGAC 62.373 66.667 10.24 12.54 40.44 4.46
4648 10531 3.181510 CGTTCAGTCGAAATCAAATCCCC 60.182 47.826 0.00 0.00 31.43 4.81
4649 10532 4.010349 GTTCAGTCGAAATCAAATCCCCT 58.990 43.478 0.00 0.00 31.43 4.79
4669 10554 3.332919 CTGAAGCATATCCGGGATGAAG 58.667 50.000 19.82 9.86 0.00 3.02
4684 10569 2.533266 TGAAGACTTGTGTGAGCTCC 57.467 50.000 12.15 3.09 0.00 4.70
4687 10572 2.356313 ACTTGTGTGAGCTCCGCG 60.356 61.111 12.15 0.00 0.00 6.46
4688 10573 2.049156 CTTGTGTGAGCTCCGCGA 60.049 61.111 8.23 8.23 0.00 5.87
4689 10574 2.355837 TTGTGTGAGCTCCGCGAC 60.356 61.111 8.23 2.83 0.00 5.19
4690 10575 4.700365 TGTGTGAGCTCCGCGACG 62.700 66.667 8.23 0.00 0.00 5.12
4691 10576 4.400109 GTGTGAGCTCCGCGACGA 62.400 66.667 8.23 0.00 0.00 4.20
4692 10577 3.440415 TGTGAGCTCCGCGACGAT 61.440 61.111 8.23 0.00 0.00 3.73
4693 10578 2.652496 GTGAGCTCCGCGACGATC 60.652 66.667 8.23 6.81 0.00 3.69
4694 10579 3.131478 TGAGCTCCGCGACGATCA 61.131 61.111 8.23 9.80 0.00 2.92
4695 10580 2.333225 GAGCTCCGCGACGATCAT 59.667 61.111 8.23 0.00 0.00 2.45
4696 10581 1.727723 GAGCTCCGCGACGATCATC 60.728 63.158 8.23 0.00 0.00 2.92
4697 10582 3.094058 GCTCCGCGACGATCATCG 61.094 66.667 8.23 6.86 46.93 3.84
4698 10583 2.631984 CTCCGCGACGATCATCGA 59.368 61.111 16.43 0.00 45.13 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 3.084536 TGTCACCCACATGTATGCAAT 57.915 42.857 0.00 0.00 0.00 3.56
153 155 2.728690 TTGCAGCATGAACACAATCC 57.271 45.000 0.00 0.00 39.69 3.01
155 157 3.738830 ACTTTGCAGCATGAACACAAT 57.261 38.095 0.00 0.00 39.69 2.71
186 188 3.084039 ACAGAAGCCAATGTATGTGGTG 58.916 45.455 0.00 0.00 38.50 4.17
187 189 3.084039 CACAGAAGCCAATGTATGTGGT 58.916 45.455 0.00 0.00 38.50 4.16
189 191 4.478699 CAACACAGAAGCCAATGTATGTG 58.521 43.478 1.83 1.83 42.78 3.21
206 208 7.809331 TGAGAAAATCACTCATTTATGCAACAC 59.191 33.333 0.00 0.00 39.10 3.32
216 218 9.932207 TGCAAATAATTGAGAAAATCACTCATT 57.068 25.926 0.00 0.00 42.68 2.57
219 221 7.814107 TGGTGCAAATAATTGAGAAAATCACTC 59.186 33.333 0.00 0.00 37.77 3.51
294 551 7.760131 TTTTTCTTCAAACTGCTCAGAATTG 57.240 32.000 3.60 8.43 33.44 2.32
296 553 7.949434 AGATTTTTCTTCAAACTGCTCAGAAT 58.051 30.769 3.60 0.00 0.00 2.40
298 555 6.949352 AGATTTTTCTTCAAACTGCTCAGA 57.051 33.333 3.60 0.00 0.00 3.27
299 556 9.520204 TTTAAGATTTTTCTTCAAACTGCTCAG 57.480 29.630 0.00 0.00 0.00 3.35
302 559 9.651913 TGTTTTAAGATTTTTCTTCAAACTGCT 57.348 25.926 18.70 0.00 41.08 4.24
324 616 2.887783 TCCGGTGTATGCAACATTGTTT 59.112 40.909 0.00 0.00 41.10 2.83
325 617 2.509569 TCCGGTGTATGCAACATTGTT 58.490 42.857 0.00 0.00 41.10 2.83
342 634 6.844279 GTCGTGTGCTACAATATATTTTTCCG 59.156 38.462 0.00 0.00 0.00 4.30
366 658 5.621197 TTCTGCTACGCACAATAAAATGT 57.379 34.783 0.00 0.00 33.79 2.71
367 659 6.257423 TGATTCTGCTACGCACAATAAAATG 58.743 36.000 0.00 0.00 33.79 2.32
381 673 6.183360 CGACTGCTTAAACATTGATTCTGCTA 60.183 38.462 0.00 0.00 0.00 3.49
383 675 4.790140 CGACTGCTTAAACATTGATTCTGC 59.210 41.667 0.00 0.00 0.00 4.26
386 678 6.170675 AGTCGACTGCTTAAACATTGATTC 57.829 37.500 19.30 0.00 0.00 2.52
402 694 1.227946 GAGGAGGCCCTAGTCGACT 59.772 63.158 23.66 23.66 44.53 4.18
414 706 1.381872 ATCGGACAGGTGGAGGAGG 60.382 63.158 0.00 0.00 0.00 4.30
422 714 2.711922 GCTCGGACATCGGACAGGT 61.712 63.158 0.00 0.00 39.77 4.00
448 743 9.787532 AATTTCATCCGTGACAATGTATTTTAG 57.212 29.630 0.00 0.00 33.11 1.85
464 759 3.010624 TGTGTGTGCAAATTTCATCCG 57.989 42.857 0.00 0.00 0.00 4.18
519 816 5.877031 ACTCGAATGATTTGAAGATTGCTG 58.123 37.500 0.00 0.00 0.00 4.41
535 832 7.013846 TCCCAAATGTTTTCAGTTAACTCGAAT 59.986 33.333 4.77 0.00 35.89 3.34
541 838 8.926715 GGATATCCCAAATGTTTTCAGTTAAC 57.073 34.615 11.02 0.00 35.89 2.01
578 875 1.203100 ACCAGCAAATGCCTCCTTCTT 60.203 47.619 0.94 0.00 43.38 2.52
580 877 2.019984 CTACCAGCAAATGCCTCCTTC 58.980 52.381 0.94 0.00 43.38 3.46
581 878 1.341383 CCTACCAGCAAATGCCTCCTT 60.341 52.381 0.94 0.00 43.38 3.36
582 879 0.257039 CCTACCAGCAAATGCCTCCT 59.743 55.000 0.94 0.00 43.38 3.69
583 880 1.387295 GCCTACCAGCAAATGCCTCC 61.387 60.000 0.94 0.00 43.38 4.30
584 881 0.394899 AGCCTACCAGCAAATGCCTC 60.395 55.000 0.94 0.00 43.38 4.70
596 893 1.739067 ACATCTTTTCGCAGCCTACC 58.261 50.000 0.00 0.00 0.00 3.18
598 895 2.536365 CGTACATCTTTTCGCAGCCTA 58.464 47.619 0.00 0.00 0.00 3.93
691 989 2.768769 TGACGGGGTTGGTGTGGA 60.769 61.111 0.00 0.00 0.00 4.02
706 1004 3.986006 GGTGCCACGACGGACTGA 61.986 66.667 0.00 0.00 36.56 3.41
775 1073 6.454795 GGCATTTTGGTCAGAGAAATAACAA 58.545 36.000 0.00 0.00 0.00 2.83
780 1078 2.833943 GGGGCATTTTGGTCAGAGAAAT 59.166 45.455 0.00 0.00 0.00 2.17
781 1079 2.158325 AGGGGCATTTTGGTCAGAGAAA 60.158 45.455 0.00 0.00 0.00 2.52
782 1080 1.428912 AGGGGCATTTTGGTCAGAGAA 59.571 47.619 0.00 0.00 0.00 2.87
783 1081 1.075601 AGGGGCATTTTGGTCAGAGA 58.924 50.000 0.00 0.00 0.00 3.10
784 1082 1.180029 CAGGGGCATTTTGGTCAGAG 58.820 55.000 0.00 0.00 0.00 3.35
785 1083 0.776810 TCAGGGGCATTTTGGTCAGA 59.223 50.000 0.00 0.00 0.00 3.27
835 1135 1.273606 CATACCTATCGTCCCAGCCTG 59.726 57.143 0.00 0.00 0.00 4.85
836 1136 1.633774 CATACCTATCGTCCCAGCCT 58.366 55.000 0.00 0.00 0.00 4.58
837 1137 0.037232 GCATACCTATCGTCCCAGCC 60.037 60.000 0.00 0.00 0.00 4.85
839 1139 0.243907 CGGCATACCTATCGTCCCAG 59.756 60.000 0.00 0.00 0.00 4.45
840 1140 0.178984 TCGGCATACCTATCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
841 1141 0.526662 CTCGGCATACCTATCGTCCC 59.473 60.000 0.00 0.00 0.00 4.46
844 1144 1.977056 TGACTCGGCATACCTATCGT 58.023 50.000 0.00 0.00 0.00 3.73
845 1145 3.309388 CTTTGACTCGGCATACCTATCG 58.691 50.000 0.00 0.00 0.00 2.92
846 1146 3.654414 CCTTTGACTCGGCATACCTATC 58.346 50.000 0.00 0.00 0.00 2.08
847 1147 2.224305 GCCTTTGACTCGGCATACCTAT 60.224 50.000 0.00 0.00 45.59 2.57
872 1177 3.449095 GAAATTACCGCGCTGCCCG 62.449 63.158 5.56 0.00 40.75 6.13
894 1199 3.011818 TCGAGTAGTTGCGTAATCTGGA 58.988 45.455 0.00 0.00 0.00 3.86
1037 1345 2.594119 TACGGCTCTCTCGCGCTTTC 62.594 60.000 5.56 0.00 0.00 2.62
1088 1396 3.612247 ATTGCTCGCCGGTTGCTCT 62.612 57.895 1.90 0.00 38.05 4.09
1174 1482 4.246206 CTCGCCGCCGTACATCGA 62.246 66.667 5.45 0.00 42.86 3.59
1205 1513 3.573772 CTGACCCGCAAGCTCACGA 62.574 63.158 9.70 0.00 0.00 4.35
1218 1526 1.201429 ACCCCACCAGATCACTGACC 61.201 60.000 0.00 0.00 46.03 4.02
1421 1736 1.134098 ACTCAACACCTCCCAACACAG 60.134 52.381 0.00 0.00 0.00 3.66
1489 1804 3.047695 TCTCTTCCCCATTCCTACTCC 57.952 52.381 0.00 0.00 0.00 3.85
1499 1814 3.913799 TCATACACCTTTTCTCTTCCCCA 59.086 43.478 0.00 0.00 0.00 4.96
1522 1837 4.215827 GCTCTCTCATAAGGGCAAATCATG 59.784 45.833 0.00 0.00 0.00 3.07
1561 1876 2.098443 TCAACGCATAGATCACACGCTA 59.902 45.455 0.00 0.00 0.00 4.26
1562 1877 1.135112 TCAACGCATAGATCACACGCT 60.135 47.619 0.00 0.00 0.00 5.07
1697 2012 7.835634 TGTTTTGCGTTTTCTAAGGAAATTT 57.164 28.000 0.00 0.00 40.57 1.82
1706 2021 6.261381 AGTCTGGTTATGTTTTGCGTTTTCTA 59.739 34.615 0.00 0.00 0.00 2.10
1714 2029 4.651994 CATCGAGTCTGGTTATGTTTTGC 58.348 43.478 0.00 0.00 0.00 3.68
1730 2045 1.079612 TGCACACTCCAGCATCGAG 60.080 57.895 0.00 0.00 35.51 4.04
1755 2070 1.588674 CGTATTAGGATGGCGGCAAA 58.411 50.000 18.31 5.92 0.00 3.68
1756 2071 0.882927 GCGTATTAGGATGGCGGCAA 60.883 55.000 18.31 0.00 0.00 4.52
1766 2081 7.479980 TGAAATCAAATTGGAAGCGTATTAGG 58.520 34.615 0.00 0.00 0.00 2.69
1857 2172 9.967346 TTCAGTACTCATAATTTAGAAGGATCG 57.033 33.333 0.00 0.00 0.00 3.69
1864 2179 9.120538 GGCCATTTTCAGTACTCATAATTTAGA 57.879 33.333 0.00 0.00 0.00 2.10
1876 2191 3.821033 AGTGACTTGGCCATTTTCAGTAC 59.179 43.478 6.09 6.19 0.00 2.73
1888 2208 3.565902 AGAACTTTAAGCAGTGACTTGGC 59.434 43.478 9.27 0.00 0.00 4.52
1895 2215 6.206634 TCCCAAATACAGAACTTTAAGCAGTG 59.793 38.462 0.00 0.00 0.00 3.66
1900 2220 7.979444 TCAGTCCCAAATACAGAACTTTAAG 57.021 36.000 0.00 0.00 0.00 1.85
1902 2222 7.685481 TCATCAGTCCCAAATACAGAACTTTA 58.315 34.615 0.00 0.00 0.00 1.85
1918 2238 6.238211 GCACACATGTATTTACTCATCAGTCC 60.238 42.308 0.00 0.00 33.62 3.85
1926 2246 6.761242 TCATACCTGCACACATGTATTTACTC 59.239 38.462 0.00 0.00 36.00 2.59
1930 2250 5.300034 CCATCATACCTGCACACATGTATTT 59.700 40.000 0.00 0.00 36.00 1.40
1947 2267 2.291282 ACTTTTGCCCGAACCCATCATA 60.291 45.455 0.00 0.00 0.00 2.15
1962 2282 2.554370 TCTTCCCCACCGTACTTTTG 57.446 50.000 0.00 0.00 0.00 2.44
2028 2348 6.757237 ACTGCTATTGGTAGATTCATGAGAG 58.243 40.000 0.00 0.00 0.00 3.20
2094 2415 5.914898 AACAAACCTTGCCATTAGTATCC 57.085 39.130 0.00 0.00 0.00 2.59
2278 2599 7.786030 AGATCACTAGTAGCAAATGAAAGCTA 58.214 34.615 0.00 0.00 42.05 3.32
2279 2600 6.648192 AGATCACTAGTAGCAAATGAAAGCT 58.352 36.000 0.00 0.00 44.55 3.74
2291 2612 7.296628 AGCTTCCCATTTAGATCACTAGTAG 57.703 40.000 0.00 0.00 0.00 2.57
2304 2633 5.954150 ACTCATATGTCAAAGCTTCCCATTT 59.046 36.000 0.00 0.00 0.00 2.32
2308 2637 5.904362 AAACTCATATGTCAAAGCTTCCC 57.096 39.130 0.00 0.00 0.00 3.97
2345 2674 2.727123 TCAGCACTTGGGTCTCAAAA 57.273 45.000 0.00 0.00 34.56 2.44
2346 2675 2.158623 ACATCAGCACTTGGGTCTCAAA 60.159 45.455 0.00 0.00 34.56 2.69
2347 2676 1.421268 ACATCAGCACTTGGGTCTCAA 59.579 47.619 0.00 0.00 0.00 3.02
2348 2677 1.059098 ACATCAGCACTTGGGTCTCA 58.941 50.000 0.00 0.00 0.00 3.27
2351 2680 3.878778 AGATAACATCAGCACTTGGGTC 58.121 45.455 0.00 0.00 0.00 4.46
2352 2681 4.018960 AGAAGATAACATCAGCACTTGGGT 60.019 41.667 0.00 0.00 0.00 4.51
2353 2682 4.521146 AGAAGATAACATCAGCACTTGGG 58.479 43.478 0.00 0.00 0.00 4.12
2354 2683 6.506500 AAAGAAGATAACATCAGCACTTGG 57.493 37.500 0.00 0.00 0.00 3.61
2355 2684 9.499585 CATAAAAGAAGATAACATCAGCACTTG 57.500 33.333 0.00 0.00 0.00 3.16
2366 2695 8.951243 ACTCTGGAAAGCATAAAAGAAGATAAC 58.049 33.333 0.00 0.00 0.00 1.89
2382 2711 3.506810 CTCAAGACGCTACTCTGGAAAG 58.493 50.000 0.00 0.00 0.00 2.62
2437 2766 1.136828 TAACAGCACCACCTCCAGTT 58.863 50.000 0.00 0.00 0.00 3.16
2500 2829 5.953571 AGAAAAGGGACAAACTATTCCACT 58.046 37.500 0.00 0.00 33.01 4.00
2520 2849 7.386573 TCACAACGTTATCTATCAGCAAAAGAA 59.613 33.333 0.00 0.00 0.00 2.52
2605 2937 0.038801 GCCTTGCAAGAGCTTCCAAC 60.039 55.000 28.05 1.90 42.74 3.77
2710 3042 8.006298 TCCATATTCTGATACGGCAAAAATTT 57.994 30.769 0.00 0.00 0.00 1.82
2770 3111 4.526970 AGAAGAAAAACACAGAGCCTTGA 58.473 39.130 0.00 0.00 0.00 3.02
2777 3118 8.335356 CGAAACAGAATAGAAGAAAAACACAGA 58.665 33.333 0.00 0.00 0.00 3.41
2812 3153 9.692749 TCGTGTATATGGATCTTTATTGAAGTC 57.307 33.333 0.00 0.00 36.70 3.01
2837 3178 5.665459 ACTTGTATTCCTGTGATACAGCTC 58.335 41.667 3.49 0.00 44.63 4.09
2888 3232 3.238108 ACACTAACAGAGAATGCGGAG 57.762 47.619 0.00 0.00 0.00 4.63
3017 3361 5.984695 TTATGGAGATCATACCTTCGAGG 57.015 43.478 0.00 0.03 38.01 4.63
3114 3468 5.105063 GCAGATTTGTTATTCCTTGGAAGC 58.895 41.667 8.16 2.24 0.00 3.86
3244 3598 1.447314 CCCAAACGACTAGACGGCC 60.447 63.158 18.36 0.00 37.61 6.13
3248 3602 0.034337 TGGCACCCAAACGACTAGAC 59.966 55.000 0.00 0.00 0.00 2.59
3281 3635 1.963515 AGGCACTTGTGGAATGGAAAC 59.036 47.619 2.81 0.00 27.25 2.78
3358 3712 4.719369 GCGACGGCGGTGTCTTCT 62.719 66.667 15.06 0.00 36.71 2.85
3558 3912 6.485171 ACCAACAAGGATCTTTGTATTAGCT 58.515 36.000 21.97 4.24 40.24 3.32
3559 3913 6.759497 ACCAACAAGGATCTTTGTATTAGC 57.241 37.500 21.97 0.00 40.24 3.09
3560 3914 8.335532 TCAACCAACAAGGATCTTTGTATTAG 57.664 34.615 21.97 13.52 40.24 1.73
3561 3915 8.698973 TTCAACCAACAAGGATCTTTGTATTA 57.301 30.769 21.97 4.32 40.24 0.98
3566 3920 6.147864 TCTTTCAACCAACAAGGATCTTTG 57.852 37.500 15.47 15.47 41.22 2.77
3579 3933 0.555769 AGCCAGGGTTCTTTCAACCA 59.444 50.000 5.89 0.00 42.03 3.67
3638 4064 1.710244 TCCAATCCAAGGAGGCAAAGA 59.290 47.619 0.00 0.00 37.29 2.52
3663 4089 1.050988 ATCGTCCCCATAGCACTGCT 61.051 55.000 8.95 8.95 43.41 4.24
3664 4090 0.679505 TATCGTCCCCATAGCACTGC 59.320 55.000 0.00 0.00 0.00 4.40
3666 4092 3.039011 ACTTTATCGTCCCCATAGCACT 58.961 45.455 0.00 0.00 0.00 4.40
3668 4094 4.196193 CAAACTTTATCGTCCCCATAGCA 58.804 43.478 0.00 0.00 0.00 3.49
3669 4095 3.564225 CCAAACTTTATCGTCCCCATAGC 59.436 47.826 0.00 0.00 0.00 2.97
3670 4096 4.814771 GTCCAAACTTTATCGTCCCCATAG 59.185 45.833 0.00 0.00 0.00 2.23
3671 4097 4.681244 CGTCCAAACTTTATCGTCCCCATA 60.681 45.833 0.00 0.00 0.00 2.74
3672 4098 3.617284 GTCCAAACTTTATCGTCCCCAT 58.383 45.455 0.00 0.00 0.00 4.00
3673 4099 2.613474 CGTCCAAACTTTATCGTCCCCA 60.613 50.000 0.00 0.00 0.00 4.96
3674 4100 2.004733 CGTCCAAACTTTATCGTCCCC 58.995 52.381 0.00 0.00 0.00 4.81
3675 4101 2.669924 GTCGTCCAAACTTTATCGTCCC 59.330 50.000 0.00 0.00 0.00 4.46
3676 4102 3.582780 AGTCGTCCAAACTTTATCGTCC 58.417 45.455 0.00 0.00 0.00 4.79
3677 4103 4.446719 ACAAGTCGTCCAAACTTTATCGTC 59.553 41.667 0.00 0.00 34.79 4.20
3678 4104 4.210537 CACAAGTCGTCCAAACTTTATCGT 59.789 41.667 0.00 0.00 34.79 3.73
3679 4105 4.698276 CACAAGTCGTCCAAACTTTATCG 58.302 43.478 0.00 0.00 34.79 2.92
3680 4106 4.024387 TGCACAAGTCGTCCAAACTTTATC 60.024 41.667 0.00 0.00 34.79 1.75
3681 4107 3.880490 TGCACAAGTCGTCCAAACTTTAT 59.120 39.130 0.00 0.00 34.79 1.40
3682 4108 3.064271 GTGCACAAGTCGTCCAAACTTTA 59.936 43.478 13.17 0.00 34.79 1.85
3683 4109 2.088423 TGCACAAGTCGTCCAAACTTT 58.912 42.857 0.00 0.00 34.79 2.66
3684 4110 1.400494 GTGCACAAGTCGTCCAAACTT 59.600 47.619 13.17 0.00 37.44 2.66
3685 4111 1.014352 GTGCACAAGTCGTCCAAACT 58.986 50.000 13.17 0.00 0.00 2.66
3686 4112 0.315869 CGTGCACAAGTCGTCCAAAC 60.316 55.000 18.64 0.00 0.00 2.93
3687 4113 0.460459 TCGTGCACAAGTCGTCCAAA 60.460 50.000 18.64 0.00 0.00 3.28
3688 4114 1.142097 TCGTGCACAAGTCGTCCAA 59.858 52.632 18.64 0.00 0.00 3.53
3689 4115 1.590525 GTCGTGCACAAGTCGTCCA 60.591 57.895 18.64 0.00 0.00 4.02
3690 4116 2.645510 CGTCGTGCACAAGTCGTCC 61.646 63.158 18.64 0.00 0.00 4.79
3691 4117 2.645510 CCGTCGTGCACAAGTCGTC 61.646 63.158 18.64 0.00 0.00 4.20
3692 4118 2.657296 CCGTCGTGCACAAGTCGT 60.657 61.111 18.64 0.00 0.00 4.34
3693 4119 0.935831 TAACCGTCGTGCACAAGTCG 60.936 55.000 18.64 14.15 0.00 4.18
3694 4120 1.210870 TTAACCGTCGTGCACAAGTC 58.789 50.000 18.64 2.70 0.00 3.01
3695 4121 1.654317 TTTAACCGTCGTGCACAAGT 58.346 45.000 18.64 4.92 0.00 3.16
3696 4122 2.412325 GGATTTAACCGTCGTGCACAAG 60.412 50.000 18.64 6.94 0.00 3.16
3697 4123 1.532007 GGATTTAACCGTCGTGCACAA 59.468 47.619 18.64 0.00 0.00 3.33
3698 4124 1.149987 GGATTTAACCGTCGTGCACA 58.850 50.000 18.64 0.81 0.00 4.57
3699 4125 1.127951 CTGGATTTAACCGTCGTGCAC 59.872 52.381 6.82 6.82 0.00 4.57
3700 4126 1.434555 CTGGATTTAACCGTCGTGCA 58.565 50.000 0.00 0.00 0.00 4.57
3701 4127 0.096454 GCTGGATTTAACCGTCGTGC 59.904 55.000 0.00 0.00 0.00 5.34
3702 4128 0.725117 GGCTGGATTTAACCGTCGTG 59.275 55.000 0.00 0.00 0.00 4.35
3703 4129 0.738412 CGGCTGGATTTAACCGTCGT 60.738 55.000 0.00 0.00 40.77 4.34
3704 4130 0.458889 TCGGCTGGATTTAACCGTCG 60.459 55.000 0.00 0.00 45.76 5.12
3705 4131 1.664151 CTTCGGCTGGATTTAACCGTC 59.336 52.381 0.00 0.00 45.76 4.79
3706 4132 1.276989 TCTTCGGCTGGATTTAACCGT 59.723 47.619 0.00 0.00 45.76 4.83
3707 4133 2.018542 TCTTCGGCTGGATTTAACCG 57.981 50.000 0.00 0.00 46.97 4.44
3708 4134 3.694566 ACATTCTTCGGCTGGATTTAACC 59.305 43.478 0.00 0.00 0.00 2.85
3709 4135 4.494199 CGACATTCTTCGGCTGGATTTAAC 60.494 45.833 0.00 0.00 35.26 2.01
3710 4136 3.621268 CGACATTCTTCGGCTGGATTTAA 59.379 43.478 0.00 0.00 35.26 1.52
3711 4137 3.118920 TCGACATTCTTCGGCTGGATTTA 60.119 43.478 0.00 0.00 39.58 1.40
3712 4138 2.009774 CGACATTCTTCGGCTGGATTT 58.990 47.619 0.00 0.00 35.26 2.17
3713 4139 1.207089 TCGACATTCTTCGGCTGGATT 59.793 47.619 0.00 0.00 39.58 3.01
3714 4140 0.824109 TCGACATTCTTCGGCTGGAT 59.176 50.000 0.00 0.00 39.58 3.41
3715 4141 0.173481 CTCGACATTCTTCGGCTGGA 59.827 55.000 0.00 0.00 39.58 3.86
3716 4142 1.424493 GCTCGACATTCTTCGGCTGG 61.424 60.000 0.00 0.00 39.58 4.85
3717 4143 0.737367 TGCTCGACATTCTTCGGCTG 60.737 55.000 0.00 0.00 39.58 4.85
3718 4144 0.737715 GTGCTCGACATTCTTCGGCT 60.738 55.000 0.00 0.00 39.58 5.52
3719 4145 1.014044 TGTGCTCGACATTCTTCGGC 61.014 55.000 0.00 0.00 39.58 5.54
3720 4146 0.994995 CTGTGCTCGACATTCTTCGG 59.005 55.000 0.00 0.00 39.58 4.30
3721 4147 0.368227 GCTGTGCTCGACATTCTTCG 59.632 55.000 0.00 0.00 40.53 3.79
3722 4148 0.723981 GGCTGTGCTCGACATTCTTC 59.276 55.000 0.00 0.00 32.74 2.87
3723 4149 0.674895 GGGCTGTGCTCGACATTCTT 60.675 55.000 0.00 0.00 32.74 2.52
3724 4150 1.078848 GGGCTGTGCTCGACATTCT 60.079 57.895 0.00 0.00 32.74 2.40
3725 4151 1.364626 CTGGGCTGTGCTCGACATTC 61.365 60.000 0.00 0.00 32.74 2.67
3726 4152 1.376424 CTGGGCTGTGCTCGACATT 60.376 57.895 0.00 0.00 32.74 2.71
3727 4153 2.267006 CTGGGCTGTGCTCGACAT 59.733 61.111 0.00 0.00 32.74 3.06
3728 4154 4.687215 GCTGGGCTGTGCTCGACA 62.687 66.667 0.00 0.00 0.00 4.35
3729 4155 4.687215 TGCTGGGCTGTGCTCGAC 62.687 66.667 0.00 0.00 0.00 4.20
3730 4156 4.383861 CTGCTGGGCTGTGCTCGA 62.384 66.667 0.00 0.00 0.00 4.04
3750 4176 3.581687 GATCGAGGGATCCAGCGGC 62.582 68.421 20.84 12.27 42.72 6.53
3751 4177 2.653702 GATCGAGGGATCCAGCGG 59.346 66.667 20.84 5.52 42.72 5.52
3752 4178 2.256764 CGATCGAGGGATCCAGCG 59.743 66.667 15.23 16.10 45.16 5.18
3753 4179 1.006805 CACGATCGAGGGATCCAGC 60.007 63.158 24.34 3.36 45.16 4.85
3754 4180 1.006805 GCACGATCGAGGGATCCAG 60.007 63.158 24.34 4.35 45.16 3.86
3755 4181 1.738346 CTGCACGATCGAGGGATCCA 61.738 60.000 24.34 5.89 45.16 3.41
3756 4182 1.006805 CTGCACGATCGAGGGATCC 60.007 63.158 24.34 1.92 45.16 3.36
3757 4183 0.103208 AACTGCACGATCGAGGGATC 59.897 55.000 24.34 1.28 44.63 3.36
3758 4184 1.399714 TAACTGCACGATCGAGGGAT 58.600 50.000 24.34 5.75 34.96 3.85
3759 4185 1.337071 GATAACTGCACGATCGAGGGA 59.663 52.381 24.34 13.49 0.00 4.20
3760 4186 1.772182 GATAACTGCACGATCGAGGG 58.228 55.000 24.34 11.76 0.00 4.30
3761 4187 1.268589 ACGATAACTGCACGATCGAGG 60.269 52.381 24.34 14.40 44.04 4.63
3762 4188 2.037649 GACGATAACTGCACGATCGAG 58.962 52.381 24.34 16.03 44.04 4.04
3763 4189 1.268386 GGACGATAACTGCACGATCGA 60.268 52.381 24.34 0.00 44.04 3.59
3764 4190 1.121240 GGACGATAACTGCACGATCG 58.879 55.000 14.88 14.88 46.12 3.69
3765 4191 2.203800 TGGACGATAACTGCACGATC 57.796 50.000 0.24 0.00 0.00 3.69
3766 4192 2.665649 TTGGACGATAACTGCACGAT 57.334 45.000 0.24 0.00 0.00 3.73
3767 4193 2.063266 GTTTGGACGATAACTGCACGA 58.937 47.619 0.24 0.00 0.00 4.35
3768 4194 1.795872 TGTTTGGACGATAACTGCACG 59.204 47.619 0.00 0.00 0.00 5.34
3769 4195 2.806244 AGTGTTTGGACGATAACTGCAC 59.194 45.455 0.00 0.00 0.00 4.57
3770 4196 2.805671 CAGTGTTTGGACGATAACTGCA 59.194 45.455 0.00 0.00 0.00 4.41
3771 4197 2.806244 ACAGTGTTTGGACGATAACTGC 59.194 45.455 0.00 0.00 38.84 4.40
3772 4198 3.121279 CGACAGTGTTTGGACGATAACTG 59.879 47.826 0.00 0.00 40.61 3.16
3773 4199 3.243636 ACGACAGTGTTTGGACGATAACT 60.244 43.478 8.15 0.00 35.67 2.24
3774 4200 3.054878 ACGACAGTGTTTGGACGATAAC 58.945 45.455 8.15 0.00 35.67 1.89
3775 4201 3.054166 CACGACAGTGTTTGGACGATAA 58.946 45.455 8.15 0.00 43.15 1.75
3776 4202 2.668250 CACGACAGTGTTTGGACGATA 58.332 47.619 8.15 0.00 43.15 2.92
3777 4203 1.497991 CACGACAGTGTTTGGACGAT 58.502 50.000 8.15 0.00 43.15 3.73
3778 4204 2.966324 CACGACAGTGTTTGGACGA 58.034 52.632 8.15 0.00 43.15 4.20
3788 4214 1.953559 AATGCTTCACACACGACAGT 58.046 45.000 0.00 0.00 0.00 3.55
3789 4215 3.291585 GAAAATGCTTCACACACGACAG 58.708 45.455 0.00 0.00 0.00 3.51
3790 4216 2.286125 CGAAAATGCTTCACACACGACA 60.286 45.455 0.00 0.00 0.00 4.35
3791 4217 2.033236 TCGAAAATGCTTCACACACGAC 60.033 45.455 0.00 0.00 0.00 4.34
3792 4218 2.205911 TCGAAAATGCTTCACACACGA 58.794 42.857 0.00 0.00 0.00 4.35
3793 4219 2.661504 TCGAAAATGCTTCACACACG 57.338 45.000 0.00 0.00 0.00 4.49
3794 4220 3.670055 CCAATCGAAAATGCTTCACACAC 59.330 43.478 0.00 0.00 0.00 3.82
3795 4221 3.567585 TCCAATCGAAAATGCTTCACACA 59.432 39.130 0.00 0.00 0.00 3.72
3796 4222 4.159377 TCCAATCGAAAATGCTTCACAC 57.841 40.909 0.00 0.00 0.00 3.82
3797 4223 6.507958 TTATCCAATCGAAAATGCTTCACA 57.492 33.333 0.00 0.00 0.00 3.58
3798 4224 5.456822 GCTTATCCAATCGAAAATGCTTCAC 59.543 40.000 0.00 0.00 0.00 3.18
3799 4225 5.450412 GGCTTATCCAATCGAAAATGCTTCA 60.450 40.000 0.00 0.00 34.01 3.02
3800 4226 4.978580 GGCTTATCCAATCGAAAATGCTTC 59.021 41.667 0.00 0.00 34.01 3.86
3801 4227 4.202151 GGGCTTATCCAATCGAAAATGCTT 60.202 41.667 0.00 0.00 36.21 3.91
3802 4228 3.319122 GGGCTTATCCAATCGAAAATGCT 59.681 43.478 0.00 0.00 36.21 3.79
3803 4229 3.552890 GGGGCTTATCCAATCGAAAATGC 60.553 47.826 0.00 0.00 36.21 3.56
3804 4230 3.304659 CGGGGCTTATCCAATCGAAAATG 60.305 47.826 0.00 0.00 36.21 2.32
3805 4231 2.884639 CGGGGCTTATCCAATCGAAAAT 59.115 45.455 0.00 0.00 36.21 1.82
3806 4232 2.294074 CGGGGCTTATCCAATCGAAAA 58.706 47.619 0.00 0.00 36.21 2.29
3807 4233 1.476110 CCGGGGCTTATCCAATCGAAA 60.476 52.381 0.00 0.00 36.21 3.46
3808 4234 0.107831 CCGGGGCTTATCCAATCGAA 59.892 55.000 0.00 0.00 36.21 3.71
3809 4235 1.752198 CCGGGGCTTATCCAATCGA 59.248 57.895 0.00 0.00 36.21 3.59
3810 4236 1.302511 CCCGGGGCTTATCCAATCG 60.303 63.158 14.71 0.00 36.21 3.34
3811 4237 0.250770 GACCCGGGGCTTATCCAATC 60.251 60.000 27.92 4.86 36.21 2.67
3812 4238 0.991355 TGACCCGGGGCTTATCCAAT 60.991 55.000 30.93 0.00 36.21 3.16
3813 4239 0.991355 ATGACCCGGGGCTTATCCAA 60.991 55.000 30.93 4.95 36.21 3.53
3814 4240 0.104882 TATGACCCGGGGCTTATCCA 60.105 55.000 30.93 5.92 36.21 3.41
3815 4241 0.613777 CTATGACCCGGGGCTTATCC 59.386 60.000 30.93 6.21 0.00 2.59
3816 4242 0.613777 CCTATGACCCGGGGCTTATC 59.386 60.000 30.93 15.06 0.00 1.75
3817 4243 0.840722 CCCTATGACCCGGGGCTTAT 60.841 60.000 30.93 17.08 36.78 1.73
3818 4244 1.460689 CCCTATGACCCGGGGCTTA 60.461 63.158 30.93 25.07 36.78 3.09
3819 4245 2.772622 CCCTATGACCCGGGGCTT 60.773 66.667 30.93 25.35 36.78 4.35
3823 4249 2.752807 CCAACCCCTATGACCCGGG 61.753 68.421 22.25 22.25 43.05 5.73
3824 4250 1.979619 GACCAACCCCTATGACCCGG 61.980 65.000 0.00 0.00 0.00 5.73
3825 4251 1.525442 GACCAACCCCTATGACCCG 59.475 63.158 0.00 0.00 0.00 5.28
3826 4252 1.525442 CGACCAACCCCTATGACCC 59.475 63.158 0.00 0.00 0.00 4.46
3827 4253 1.269703 ACCGACCAACCCCTATGACC 61.270 60.000 0.00 0.00 0.00 4.02
4053 4481 8.916062 TGATCTTGCAATCCAATTATGTAACAT 58.084 29.630 0.00 0.00 31.91 2.71
4058 4486 9.675464 AAAAATGATCTTGCAATCCAATTATGT 57.325 25.926 0.00 0.00 31.91 2.29
4155 6383 1.614385 CGACGCAGGTTGTACTACTG 58.386 55.000 7.38 7.39 35.40 2.74
4156 6384 0.524862 CCGACGCAGGTTGTACTACT 59.475 55.000 7.38 0.00 0.00 2.57
4157 6385 0.242017 ACCGACGCAGGTTGTACTAC 59.758 55.000 0.00 0.00 43.00 2.73
4159 6387 1.006571 CACCGACGCAGGTTGTACT 60.007 57.895 0.00 0.00 43.00 2.73
4181 6413 8.355169 CCCTGGATAATAACAATTGATCACTTG 58.645 37.037 20.70 20.70 0.00 3.16
4194 6426 3.559384 GCTGCCCTACCCTGGATAATAAC 60.559 52.174 0.00 0.00 0.00 1.89
4202 9269 2.797278 CGTAGCTGCCCTACCCTGG 61.797 68.421 0.00 0.00 42.85 4.45
4206 9273 1.558233 ATATCCGTAGCTGCCCTACC 58.442 55.000 0.00 0.00 42.85 3.18
4264 9332 7.311364 ACAAACACACTAAAACGTGTCTATT 57.689 32.000 0.00 0.00 45.74 1.73
4274 9342 4.948608 TGAGCGAACAAACACACTAAAA 57.051 36.364 0.00 0.00 0.00 1.52
4311 9379 9.736023 GATGTTTTAGATATTTCAACATGGACC 57.264 33.333 0.00 0.00 38.02 4.46
4341 9409 9.710818 ACTACTCCCTCTATTCACAAATACTTA 57.289 33.333 0.00 0.00 0.00 2.24
4342 9410 8.611051 ACTACTCCCTCTATTCACAAATACTT 57.389 34.615 0.00 0.00 0.00 2.24
4343 9411 8.478877 CAACTACTCCCTCTATTCACAAATACT 58.521 37.037 0.00 0.00 0.00 2.12
4344 9412 7.711339 CCAACTACTCCCTCTATTCACAAATAC 59.289 40.741 0.00 0.00 0.00 1.89
4345 9413 7.635089 GCCAACTACTCCCTCTATTCACAAATA 60.635 40.741 0.00 0.00 0.00 1.40
4355 9423 2.457598 CAGTGCCAACTACTCCCTCTA 58.542 52.381 0.00 0.00 33.79 2.43
4356 9424 1.270907 CAGTGCCAACTACTCCCTCT 58.729 55.000 0.00 0.00 33.79 3.69
4369 9437 0.737715 CACTAGGACTTCGCAGTGCC 60.738 60.000 10.11 0.00 42.32 5.01
4444 10094 5.356751 ACAATTCGAGCAAACATTATAGCCA 59.643 36.000 0.00 0.00 0.00 4.75
4453 10103 2.132740 GGCAACAATTCGAGCAAACA 57.867 45.000 0.00 0.00 0.00 2.83
4481 10363 2.512896 AGTCTCCCTACGTTATCCAGGA 59.487 50.000 2.76 0.00 0.00 3.86
4490 10372 0.324368 TGCCATGAGTCTCCCTACGT 60.324 55.000 0.00 0.00 0.00 3.57
4509 10392 0.251922 AGACACCATTTGGCAGGCAT 60.252 50.000 0.00 0.00 34.40 4.40
4566 10449 7.648039 TTTGTATCACACCTTTTTAACAGGT 57.352 32.000 0.00 0.00 46.35 4.00
4567 10450 9.191995 GATTTTGTATCACACCTTTTTAACAGG 57.808 33.333 0.00 0.00 37.45 4.00
4597 10480 1.738099 CGACAAGCCACCCGAAGAG 60.738 63.158 0.00 0.00 0.00 2.85
4619 10502 3.562779 TTCGACTGAACGCGGTCCC 62.563 63.158 23.54 9.95 45.69 4.46
4620 10503 1.012486 ATTTCGACTGAACGCGGTCC 61.012 55.000 23.54 5.10 45.69 4.46
4621 10504 0.365859 GATTTCGACTGAACGCGGTC 59.634 55.000 19.40 19.40 45.13 4.79
4622 10505 0.319211 TGATTTCGACTGAACGCGGT 60.319 50.000 12.47 1.91 32.71 5.68
4623 10506 0.787787 TTGATTTCGACTGAACGCGG 59.212 50.000 12.47 0.00 32.71 6.46
4624 10507 2.570468 TTTGATTTCGACTGAACGCG 57.430 45.000 3.53 3.53 32.71 6.01
4648 10531 3.007290 TCTTCATCCCGGATATGCTTCAG 59.993 47.826 0.73 1.56 0.00 3.02
4649 10532 2.972021 TCTTCATCCCGGATATGCTTCA 59.028 45.455 0.73 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.