Multiple sequence alignment - TraesCS6B01G333100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G333100 chr6B 100.000 3155 0 0 1 3155 584589776 584586622 0.000000e+00 5827.0
1 TraesCS6B01G333100 chr6B 91.341 1917 130 19 954 2858 584688023 584686131 0.000000e+00 2588.0
2 TraesCS6B01G333100 chr6D 96.669 1501 42 4 801 2299 391337849 391336355 0.000000e+00 2488.0
3 TraesCS6B01G333100 chr6D 90.087 686 59 3 2479 3155 391336347 391335662 0.000000e+00 881.0
4 TraesCS6B01G333100 chr6D 92.777 443 24 2 2 443 391338375 391337940 4.440000e-178 634.0
5 TraesCS6B01G333100 chr6D 87.033 455 47 5 1 452 391506690 391506245 1.310000e-138 503.0
6 TraesCS6B01G333100 chr6D 97.603 292 7 0 451 742 108468335 108468626 4.700000e-138 501.0
7 TraesCS6B01G333100 chr6D 92.690 342 10 1 455 781 369917386 369917045 2.200000e-131 479.0
8 TraesCS6B01G333100 chr6D 91.954 87 3 4 799 885 391506229 391506147 5.530000e-23 119.0
9 TraesCS6B01G333100 chr6A 94.758 1507 70 5 799 2299 537486478 537484975 0.000000e+00 2337.0
10 TraesCS6B01G333100 chr6A 93.423 1566 96 5 799 2361 537602848 537601287 0.000000e+00 2314.0
11 TraesCS6B01G333100 chr6A 93.423 1566 96 5 799 2361 537609971 537608410 0.000000e+00 2314.0
12 TraesCS6B01G333100 chr6A 87.458 598 67 5 2479 3073 537484967 537484375 0.000000e+00 682.0
13 TraesCS6B01G333100 chr6A 90.083 484 43 2 2379 2858 537601297 537600815 9.610000e-175 623.0
14 TraesCS6B01G333100 chr6A 90.083 484 43 2 2379 2858 537608420 537607938 9.610000e-175 623.0
15 TraesCS6B01G333100 chr6A 87.527 465 52 3 2491 2952 537466999 537466538 1.670000e-147 532.0
16 TraesCS6B01G333100 chr6A 90.361 249 22 2 4 251 537591159 537590912 3.030000e-85 326.0
17 TraesCS6B01G333100 chr6A 90.726 248 16 2 4 251 537610486 537610246 1.090000e-84 324.0
18 TraesCS6B01G333100 chr6A 90.323 248 17 2 4 251 537603363 537603123 5.080000e-83 318.0
19 TraesCS6B01G333100 chr6A 79.638 221 34 8 235 452 537603109 537602897 7.050000e-32 148.0
20 TraesCS6B01G333100 chr6A 79.638 221 34 8 235 452 537610232 537610020 7.050000e-32 148.0
21 TraesCS6B01G333100 chr6A 81.176 85 12 2 1523 1603 8393086 8393002 7.300000e-07 65.8
22 TraesCS6B01G333100 chrUn 93.931 346 6 1 451 781 186190798 186190453 2.810000e-140 508.0
23 TraesCS6B01G333100 chrUn 93.642 346 7 1 451 781 86478671 86479016 1.310000e-138 503.0
24 TraesCS6B01G333100 chrUn 93.642 346 7 1 451 781 221547800 221547455 1.310000e-138 503.0
25 TraesCS6B01G333100 chr4D 93.931 346 6 1 451 781 123737025 123736680 2.810000e-140 508.0
26 TraesCS6B01G333100 chr4D 93.642 346 7 1 451 781 123507530 123507185 1.310000e-138 503.0
27 TraesCS6B01G333100 chr4D 93.064 346 9 1 451 781 123654229 123653884 2.830000e-135 492.0
28 TraesCS6B01G333100 chr4D 92.197 346 12 1 451 781 241048698 241048353 2.850000e-130 475.0
29 TraesCS6B01G333100 chr4B 93.931 346 6 1 451 781 209270691 209270346 2.810000e-140 508.0
30 TraesCS6B01G333100 chr7D 93.642 346 7 1 451 781 579030350 579030695 1.310000e-138 503.0
31 TraesCS6B01G333100 chr1A 93.642 346 7 1 451 781 112004290 112003945 1.310000e-138 503.0
32 TraesCS6B01G333100 chr1D 92.121 330 11 1 467 781 269438072 269437743 4.800000e-123 451.0
33 TraesCS6B01G333100 chr1B 81.818 132 22 2 1117 1247 683538535 683538405 3.330000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G333100 chr6B 584586622 584589776 3154 True 5827.000000 5827 100.000000 1 3155 1 chr6B.!!$R1 3154
1 TraesCS6B01G333100 chr6B 584686131 584688023 1892 True 2588.000000 2588 91.341000 954 2858 1 chr6B.!!$R2 1904
2 TraesCS6B01G333100 chr6D 391335662 391338375 2713 True 1334.333333 2488 93.177667 2 3155 3 chr6D.!!$R2 3153
3 TraesCS6B01G333100 chr6D 391506147 391506690 543 True 311.000000 503 89.493500 1 885 2 chr6D.!!$R3 884
4 TraesCS6B01G333100 chr6A 537484375 537486478 2103 True 1509.500000 2337 91.108000 799 3073 2 chr6A.!!$R4 2274
5 TraesCS6B01G333100 chr6A 537607938 537610486 2548 True 852.250000 2314 88.467500 4 2858 4 chr6A.!!$R6 2854
6 TraesCS6B01G333100 chr6A 537600815 537603363 2548 True 850.750000 2314 88.366750 4 2858 4 chr6A.!!$R5 2854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 566 0.033601 TCTGGTTGTTGCCACCAAGT 60.034 50.0 0.0 0.0 34.36 3.16 F
526 568 0.033601 TGGTTGTTGCCACCAAGTCT 60.034 50.0 0.0 0.0 32.81 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1630 0.102663 GAGGAGGTAGTAGTTGCGCC 59.897 60.0 4.18 0.0 0.0 6.53 R
2252 2386 0.320771 AGCCCAAGTTGCAGAGTACG 60.321 55.0 0.00 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.433121 AAAGGCCCCATTCTTGCAAA 58.567 45.000 0.00 0.00 0.00 3.68
88 90 7.198390 CCATTCTTGCAAAACCTATATCAGTG 58.802 38.462 0.00 0.00 0.00 3.66
110 112 2.590821 GCATGCCCAGGTATTTCTCAT 58.409 47.619 6.36 0.00 0.00 2.90
175 177 3.838244 TTAACTGTCTGTGAGCAACCT 57.162 42.857 0.00 0.00 0.00 3.50
275 308 2.644798 ACCAAACTAGCTCCCTCAACAT 59.355 45.455 0.00 0.00 0.00 2.71
312 346 1.728971 CAGACTGTCATCCGCAAAGAC 59.271 52.381 10.88 0.00 0.00 3.01
313 347 0.716108 GACTGTCATCCGCAAAGACG 59.284 55.000 2.24 0.00 35.09 4.18
314 348 0.317160 ACTGTCATCCGCAAAGACGA 59.683 50.000 0.00 0.00 35.09 4.20
315 349 1.270094 ACTGTCATCCGCAAAGACGAA 60.270 47.619 0.00 0.00 35.09 3.85
316 350 1.798223 CTGTCATCCGCAAAGACGAAA 59.202 47.619 0.00 0.00 35.09 3.46
317 351 1.798223 TGTCATCCGCAAAGACGAAAG 59.202 47.619 0.00 0.00 35.09 2.62
318 352 2.066262 GTCATCCGCAAAGACGAAAGA 58.934 47.619 0.00 0.00 34.06 2.52
327 361 4.669197 CGCAAAGACGAAAGAGTAAATGGG 60.669 45.833 0.00 0.00 34.06 4.00
347 381 2.292267 GTGATTGATGGTGGCGATTCT 58.708 47.619 0.00 0.00 0.00 2.40
406 441 5.759506 TGACTTTTTATGAGGCACGAAAA 57.240 34.783 0.00 0.00 0.00 2.29
408 443 5.298276 TGACTTTTTATGAGGCACGAAAAGT 59.702 36.000 16.85 16.85 46.96 2.66
430 465 6.125029 AGTTCTATGCTGCCAACAAGAATAT 58.875 36.000 0.00 0.00 0.00 1.28
436 471 3.316308 GCTGCCAACAAGAATATGTAGGG 59.684 47.826 0.00 0.00 32.02 3.53
452 494 2.062070 GGGAGAGATTGGATCCCCG 58.938 63.158 9.90 0.00 46.03 5.73
454 496 1.132500 GGAGAGATTGGATCCCCGTT 58.868 55.000 9.90 0.00 34.29 4.44
455 497 1.490910 GGAGAGATTGGATCCCCGTTT 59.509 52.381 9.90 0.00 34.29 3.60
456 498 2.485657 GGAGAGATTGGATCCCCGTTTC 60.486 54.545 9.90 0.82 34.29 2.78
457 499 2.436173 GAGAGATTGGATCCCCGTTTCT 59.564 50.000 9.90 5.96 34.29 2.52
458 500 2.171448 AGAGATTGGATCCCCGTTTCTG 59.829 50.000 9.90 0.00 34.29 3.02
459 501 2.170607 GAGATTGGATCCCCGTTTCTGA 59.829 50.000 9.90 0.00 34.29 3.27
460 502 2.780010 AGATTGGATCCCCGTTTCTGAT 59.220 45.455 9.90 0.00 34.29 2.90
461 503 3.973973 AGATTGGATCCCCGTTTCTGATA 59.026 43.478 9.90 0.00 34.29 2.15
462 504 3.838244 TTGGATCCCCGTTTCTGATAG 57.162 47.619 9.90 0.00 34.29 2.08
463 505 2.047061 TGGATCCCCGTTTCTGATAGG 58.953 52.381 9.90 0.00 34.29 2.57
464 506 2.047830 GGATCCCCGTTTCTGATAGGT 58.952 52.381 0.00 0.00 0.00 3.08
465 507 2.224305 GGATCCCCGTTTCTGATAGGTG 60.224 54.545 0.00 0.00 0.00 4.00
466 508 0.539986 TCCCCGTTTCTGATAGGTGC 59.460 55.000 0.00 0.00 0.00 5.01
467 509 0.251916 CCCCGTTTCTGATAGGTGCA 59.748 55.000 0.00 0.00 0.00 4.57
468 510 1.369625 CCCGTTTCTGATAGGTGCAC 58.630 55.000 8.80 8.80 0.00 4.57
469 511 1.369625 CCGTTTCTGATAGGTGCACC 58.630 55.000 29.22 29.22 0.00 5.01
478 520 2.034687 AGGTGCACCTGACATGGC 59.965 61.111 37.39 6.73 46.55 4.40
479 521 2.282391 GGTGCACCTGACATGGCA 60.282 61.111 29.12 0.00 0.00 4.92
480 522 1.679977 GGTGCACCTGACATGGCAT 60.680 57.895 29.12 0.00 38.68 4.40
481 523 1.252904 GGTGCACCTGACATGGCATT 61.253 55.000 29.12 0.00 38.68 3.56
482 524 0.604578 GTGCACCTGACATGGCATTT 59.395 50.000 0.00 0.00 38.68 2.32
483 525 0.889994 TGCACCTGACATGGCATTTC 59.110 50.000 0.00 6.69 0.00 2.17
484 526 0.174162 GCACCTGACATGGCATTTCC 59.826 55.000 0.00 0.00 0.00 3.13
518 560 8.938801 ATAATATATCATTCTGGTTGTTGCCA 57.061 30.769 0.00 0.00 36.97 4.92
519 561 4.989279 ATATCATTCTGGTTGTTGCCAC 57.011 40.909 0.00 0.00 34.36 5.01
520 562 1.327303 TCATTCTGGTTGTTGCCACC 58.673 50.000 0.00 0.00 34.36 4.61
521 563 1.039068 CATTCTGGTTGTTGCCACCA 58.961 50.000 0.00 0.00 34.36 4.17
522 564 1.411977 CATTCTGGTTGTTGCCACCAA 59.588 47.619 0.00 0.00 34.36 3.67
523 565 1.110442 TTCTGGTTGTTGCCACCAAG 58.890 50.000 0.00 0.00 34.36 3.61
524 566 0.033601 TCTGGTTGTTGCCACCAAGT 60.034 50.000 0.00 0.00 34.36 3.16
525 567 0.385390 CTGGTTGTTGCCACCAAGTC 59.615 55.000 0.00 0.00 34.36 3.01
526 568 0.033601 TGGTTGTTGCCACCAAGTCT 60.034 50.000 0.00 0.00 32.81 3.24
527 569 0.668535 GGTTGTTGCCACCAAGTCTC 59.331 55.000 0.00 0.00 0.00 3.36
528 570 1.680338 GTTGTTGCCACCAAGTCTCT 58.320 50.000 0.00 0.00 0.00 3.10
529 571 2.024414 GTTGTTGCCACCAAGTCTCTT 58.976 47.619 0.00 0.00 0.00 2.85
530 572 1.679139 TGTTGCCACCAAGTCTCTTG 58.321 50.000 2.90 2.90 0.00 3.02
531 573 0.312102 GTTGCCACCAAGTCTCTTGC 59.688 55.000 4.22 0.00 0.00 4.01
532 574 0.183492 TTGCCACCAAGTCTCTTGCT 59.817 50.000 4.22 0.00 0.00 3.91
533 575 0.250467 TGCCACCAAGTCTCTTGCTC 60.250 55.000 4.22 0.00 0.00 4.26
534 576 0.957888 GCCACCAAGTCTCTTGCTCC 60.958 60.000 4.22 0.00 0.00 4.70
535 577 0.689623 CCACCAAGTCTCTTGCTCCT 59.310 55.000 4.22 0.00 0.00 3.69
536 578 1.902508 CCACCAAGTCTCTTGCTCCTA 59.097 52.381 4.22 0.00 0.00 2.94
537 579 2.503356 CCACCAAGTCTCTTGCTCCTAT 59.497 50.000 4.22 0.00 0.00 2.57
538 580 3.054802 CCACCAAGTCTCTTGCTCCTATT 60.055 47.826 4.22 0.00 0.00 1.73
539 581 4.162320 CCACCAAGTCTCTTGCTCCTATTA 59.838 45.833 4.22 0.00 0.00 0.98
540 582 5.338381 CCACCAAGTCTCTTGCTCCTATTAA 60.338 44.000 4.22 0.00 0.00 1.40
541 583 5.814705 CACCAAGTCTCTTGCTCCTATTAAG 59.185 44.000 4.22 0.00 0.00 1.85
542 584 4.813697 CCAAGTCTCTTGCTCCTATTAAGC 59.186 45.833 4.22 0.00 40.26 3.09
543 585 5.396213 CCAAGTCTCTTGCTCCTATTAAGCT 60.396 44.000 4.22 0.00 40.50 3.74
544 586 5.529581 AGTCTCTTGCTCCTATTAAGCTC 57.470 43.478 0.00 0.00 40.50 4.09
545 587 4.959210 AGTCTCTTGCTCCTATTAAGCTCA 59.041 41.667 0.00 0.00 40.50 4.26
546 588 5.423610 AGTCTCTTGCTCCTATTAAGCTCAA 59.576 40.000 0.00 0.00 40.50 3.02
547 589 5.522097 GTCTCTTGCTCCTATTAAGCTCAAC 59.478 44.000 0.00 0.00 40.50 3.18
548 590 4.770795 TCTTGCTCCTATTAAGCTCAACC 58.229 43.478 0.00 0.00 40.50 3.77
549 591 4.471386 TCTTGCTCCTATTAAGCTCAACCT 59.529 41.667 0.00 0.00 40.50 3.50
550 592 4.844349 TGCTCCTATTAAGCTCAACCTT 57.156 40.909 0.00 0.00 40.50 3.50
551 593 5.950544 TGCTCCTATTAAGCTCAACCTTA 57.049 39.130 0.00 0.00 40.50 2.69
552 594 5.918608 TGCTCCTATTAAGCTCAACCTTAG 58.081 41.667 0.00 0.00 40.50 2.18
553 595 5.425539 TGCTCCTATTAAGCTCAACCTTAGT 59.574 40.000 0.00 0.00 40.50 2.24
554 596 6.610020 TGCTCCTATTAAGCTCAACCTTAGTA 59.390 38.462 0.00 0.00 40.50 1.82
555 597 7.149307 GCTCCTATTAAGCTCAACCTTAGTAG 58.851 42.308 0.00 0.00 37.36 2.57
556 598 7.014422 GCTCCTATTAAGCTCAACCTTAGTAGA 59.986 40.741 10.95 0.00 38.70 2.59
557 599 8.834004 TCCTATTAAGCTCAACCTTAGTAGAA 57.166 34.615 10.95 0.00 38.70 2.10
558 600 8.915036 TCCTATTAAGCTCAACCTTAGTAGAAG 58.085 37.037 10.95 0.00 38.70 2.85
559 601 8.697292 CCTATTAAGCTCAACCTTAGTAGAAGT 58.303 37.037 10.95 0.00 38.70 3.01
560 602 9.522804 CTATTAAGCTCAACCTTAGTAGAAGTG 57.477 37.037 5.90 0.00 38.70 3.16
561 603 4.810191 AGCTCAACCTTAGTAGAAGTGG 57.190 45.455 0.00 0.00 0.00 4.00
562 604 3.515901 AGCTCAACCTTAGTAGAAGTGGG 59.484 47.826 0.00 0.00 0.00 4.61
563 605 3.863041 CTCAACCTTAGTAGAAGTGGGC 58.137 50.000 0.00 0.00 0.00 5.36
564 606 3.244582 TCAACCTTAGTAGAAGTGGGCA 58.755 45.455 0.00 0.00 0.00 5.36
565 607 3.649023 TCAACCTTAGTAGAAGTGGGCAA 59.351 43.478 0.00 0.00 0.00 4.52
566 608 3.697619 ACCTTAGTAGAAGTGGGCAAC 57.302 47.619 0.00 0.00 0.00 4.17
567 609 2.028385 ACCTTAGTAGAAGTGGGCAACG 60.028 50.000 0.00 0.00 37.60 4.10
568 610 2.618053 CTTAGTAGAAGTGGGCAACGG 58.382 52.381 0.00 0.00 37.60 4.44
569 611 0.248289 TAGTAGAAGTGGGCAACGGC 59.752 55.000 0.00 0.00 40.13 5.68
570 612 1.302192 GTAGAAGTGGGCAACGGCA 60.302 57.895 0.00 0.00 43.71 5.69
571 613 0.676782 GTAGAAGTGGGCAACGGCAT 60.677 55.000 0.00 0.00 43.71 4.40
572 614 0.037590 TAGAAGTGGGCAACGGCATT 59.962 50.000 0.00 0.00 43.71 3.56
573 615 1.080569 GAAGTGGGCAACGGCATTG 60.081 57.895 0.00 0.00 43.71 2.82
574 616 2.490993 GAAGTGGGCAACGGCATTGG 62.491 60.000 0.00 0.00 43.71 3.16
575 617 4.067913 GTGGGCAACGGCATTGGG 62.068 66.667 0.00 0.00 43.71 4.12
576 618 4.612279 TGGGCAACGGCATTGGGT 62.612 61.111 0.00 0.00 43.71 4.51
577 619 4.067913 GGGCAACGGCATTGGGTG 62.068 66.667 0.00 0.00 43.71 4.61
578 620 4.067913 GGCAACGGCATTGGGTGG 62.068 66.667 0.00 0.00 43.71 4.61
579 621 2.988684 GCAACGGCATTGGGTGGA 60.989 61.111 0.00 0.00 38.88 4.02
580 622 2.961768 CAACGGCATTGGGTGGAC 59.038 61.111 0.00 0.00 34.34 4.02
581 623 1.900981 CAACGGCATTGGGTGGACA 60.901 57.895 0.00 0.00 34.34 4.02
582 624 1.603455 AACGGCATTGGGTGGACAG 60.603 57.895 0.00 0.00 0.00 3.51
583 625 2.034066 CGGCATTGGGTGGACAGT 59.966 61.111 0.00 0.00 0.00 3.55
584 626 2.040544 CGGCATTGGGTGGACAGTC 61.041 63.158 0.00 0.00 0.00 3.51
585 627 1.380302 GGCATTGGGTGGACAGTCT 59.620 57.895 0.00 0.00 0.00 3.24
586 628 0.618458 GGCATTGGGTGGACAGTCTA 59.382 55.000 0.00 0.00 0.00 2.59
587 629 1.212935 GGCATTGGGTGGACAGTCTAT 59.787 52.381 0.00 0.00 0.00 1.98
588 630 2.565841 GCATTGGGTGGACAGTCTATC 58.434 52.381 0.00 0.00 0.00 2.08
589 631 2.746472 GCATTGGGTGGACAGTCTATCC 60.746 54.545 9.35 9.35 36.70 2.59
590 632 1.191535 TTGGGTGGACAGTCTATCCG 58.808 55.000 11.44 0.00 39.30 4.18
591 633 1.327690 TGGGTGGACAGTCTATCCGC 61.328 60.000 11.44 1.78 44.60 5.54
593 635 1.442148 GTGGACAGTCTATCCGCCC 59.558 63.158 0.00 0.00 40.30 6.13
594 636 1.043673 GTGGACAGTCTATCCGCCCT 61.044 60.000 0.00 0.00 40.30 5.19
595 637 0.325296 TGGACAGTCTATCCGCCCTT 60.325 55.000 0.00 0.00 39.30 3.95
596 638 1.063492 TGGACAGTCTATCCGCCCTTA 60.063 52.381 0.00 0.00 39.30 2.69
597 639 2.037144 GGACAGTCTATCCGCCCTTAA 58.963 52.381 0.00 0.00 0.00 1.85
598 640 2.036089 GGACAGTCTATCCGCCCTTAAG 59.964 54.545 0.00 0.00 0.00 1.85
599 641 2.694109 GACAGTCTATCCGCCCTTAAGT 59.306 50.000 0.97 0.00 0.00 2.24
600 642 2.431057 ACAGTCTATCCGCCCTTAAGTG 59.569 50.000 0.97 0.00 0.00 3.16
601 643 2.040178 AGTCTATCCGCCCTTAAGTGG 58.960 52.381 0.97 3.80 38.86 4.00
602 644 1.761198 GTCTATCCGCCCTTAAGTGGT 59.239 52.381 0.97 0.00 38.61 4.16
603 645 2.961062 GTCTATCCGCCCTTAAGTGGTA 59.039 50.000 0.97 0.00 38.61 3.25
604 646 3.577415 GTCTATCCGCCCTTAAGTGGTAT 59.423 47.826 0.97 2.08 38.61 2.73
605 647 4.040095 GTCTATCCGCCCTTAAGTGGTATT 59.960 45.833 0.97 0.00 38.61 1.89
606 648 5.244626 GTCTATCCGCCCTTAAGTGGTATTA 59.755 44.000 0.97 0.00 38.61 0.98
607 649 3.825143 TCCGCCCTTAAGTGGTATTAC 57.175 47.619 0.97 0.00 38.61 1.89
608 650 2.435437 TCCGCCCTTAAGTGGTATTACC 59.565 50.000 5.87 5.87 38.61 2.85
625 667 4.555610 CAGCCATTCTGGAGGAGC 57.444 61.111 0.00 0.00 40.96 4.70
626 668 1.605992 CAGCCATTCTGGAGGAGCA 59.394 57.895 0.00 0.00 40.96 4.26
627 669 0.464013 CAGCCATTCTGGAGGAGCAG 60.464 60.000 0.00 0.00 40.96 4.24
628 670 0.913451 AGCCATTCTGGAGGAGCAGT 60.913 55.000 0.00 0.00 40.96 4.40
629 671 0.034670 GCCATTCTGGAGGAGCAGTT 60.035 55.000 0.00 0.00 40.96 3.16
630 672 1.747709 CCATTCTGGAGGAGCAGTTG 58.252 55.000 0.00 0.00 40.96 3.16
631 673 1.280133 CCATTCTGGAGGAGCAGTTGA 59.720 52.381 0.00 0.00 40.96 3.18
632 674 2.092538 CCATTCTGGAGGAGCAGTTGAT 60.093 50.000 0.00 0.00 40.96 2.57
633 675 3.618351 CATTCTGGAGGAGCAGTTGATT 58.382 45.455 0.00 0.00 0.00 2.57
634 676 3.795688 TTCTGGAGGAGCAGTTGATTT 57.204 42.857 0.00 0.00 0.00 2.17
635 677 4.908601 TTCTGGAGGAGCAGTTGATTTA 57.091 40.909 0.00 0.00 0.00 1.40
636 678 4.478206 TCTGGAGGAGCAGTTGATTTAG 57.522 45.455 0.00 0.00 0.00 1.85
637 679 2.941720 CTGGAGGAGCAGTTGATTTAGC 59.058 50.000 0.00 0.00 0.00 3.09
638 680 2.305635 TGGAGGAGCAGTTGATTTAGCA 59.694 45.455 0.00 0.00 0.00 3.49
639 681 3.244875 TGGAGGAGCAGTTGATTTAGCAA 60.245 43.478 0.00 0.00 0.00 3.91
640 682 3.950395 GGAGGAGCAGTTGATTTAGCAAT 59.050 43.478 0.00 0.00 0.00 3.56
641 683 4.400567 GGAGGAGCAGTTGATTTAGCAATT 59.599 41.667 0.00 0.00 0.00 2.32
642 684 5.105595 GGAGGAGCAGTTGATTTAGCAATTT 60.106 40.000 0.00 0.00 0.00 1.82
643 685 6.350629 AGGAGCAGTTGATTTAGCAATTTT 57.649 33.333 0.00 0.00 0.00 1.82
644 686 6.762333 AGGAGCAGTTGATTTAGCAATTTTT 58.238 32.000 0.00 0.00 0.00 1.94
645 687 7.895759 AGGAGCAGTTGATTTAGCAATTTTTA 58.104 30.769 0.00 0.00 0.00 1.52
646 688 8.031277 AGGAGCAGTTGATTTAGCAATTTTTAG 58.969 33.333 0.00 0.00 0.00 1.85
647 689 7.814587 GGAGCAGTTGATTTAGCAATTTTTAGT 59.185 33.333 0.00 0.00 0.00 2.24
648 690 8.748380 AGCAGTTGATTTAGCAATTTTTAGTC 57.252 30.769 0.00 0.00 0.00 2.59
649 691 8.579863 AGCAGTTGATTTAGCAATTTTTAGTCT 58.420 29.630 0.00 0.00 0.00 3.24
650 692 9.196552 GCAGTTGATTTAGCAATTTTTAGTCTT 57.803 29.630 0.00 0.00 0.00 3.01
661 703 9.118300 AGCAATTTTTAGTCTTCATCTATCAGG 57.882 33.333 0.00 0.00 0.00 3.86
662 704 8.897752 GCAATTTTTAGTCTTCATCTATCAGGT 58.102 33.333 0.00 0.00 0.00 4.00
671 713 9.152327 AGTCTTCATCTATCAGGTATTTCATCA 57.848 33.333 0.00 0.00 0.00 3.07
672 714 9.770097 GTCTTCATCTATCAGGTATTTCATCAA 57.230 33.333 0.00 0.00 0.00 2.57
683 725 9.753674 TCAGGTATTTCATCAATTTTAGGTTCT 57.246 29.630 0.00 0.00 0.00 3.01
715 757 9.767684 TTTTATAACAACTATCTTCAACATGCG 57.232 29.630 0.00 0.00 0.00 4.73
716 758 6.985188 ATAACAACTATCTTCAACATGCGT 57.015 33.333 0.00 0.00 0.00 5.24
717 759 4.668576 ACAACTATCTTCAACATGCGTG 57.331 40.909 3.82 3.82 0.00 5.34
718 760 3.436704 ACAACTATCTTCAACATGCGTGG 59.563 43.478 11.36 0.00 0.00 4.94
719 761 3.610040 ACTATCTTCAACATGCGTGGA 57.390 42.857 11.36 0.00 0.00 4.02
720 762 3.262420 ACTATCTTCAACATGCGTGGAC 58.738 45.455 11.36 0.00 0.00 4.02
721 763 1.453155 ATCTTCAACATGCGTGGACC 58.547 50.000 11.36 0.00 0.00 4.46
722 764 0.396435 TCTTCAACATGCGTGGACCT 59.604 50.000 11.36 0.00 0.00 3.85
723 765 0.518636 CTTCAACATGCGTGGACCTG 59.481 55.000 11.36 2.30 0.00 4.00
724 766 0.107643 TTCAACATGCGTGGACCTGA 59.892 50.000 11.36 4.67 0.00 3.86
725 767 0.320683 TCAACATGCGTGGACCTGAG 60.321 55.000 11.36 0.00 0.00 3.35
726 768 0.320683 CAACATGCGTGGACCTGAGA 60.321 55.000 11.36 0.00 0.00 3.27
727 769 0.615331 AACATGCGTGGACCTGAGAT 59.385 50.000 11.36 0.00 0.00 2.75
728 770 0.107993 ACATGCGTGGACCTGAGATG 60.108 55.000 11.36 0.00 0.00 2.90
729 771 0.176449 CATGCGTGGACCTGAGATGA 59.824 55.000 0.00 0.00 0.00 2.92
730 772 0.176680 ATGCGTGGACCTGAGATGAC 59.823 55.000 0.00 0.00 0.00 3.06
731 773 0.900182 TGCGTGGACCTGAGATGACT 60.900 55.000 0.00 0.00 0.00 3.41
732 774 1.103803 GCGTGGACCTGAGATGACTA 58.896 55.000 0.00 0.00 0.00 2.59
733 775 1.683917 GCGTGGACCTGAGATGACTAT 59.316 52.381 0.00 0.00 0.00 2.12
734 776 2.544694 GCGTGGACCTGAGATGACTATG 60.545 54.545 0.00 0.00 0.00 2.23
735 777 2.544694 CGTGGACCTGAGATGACTATGC 60.545 54.545 0.00 0.00 0.00 3.14
736 778 2.432146 GTGGACCTGAGATGACTATGCA 59.568 50.000 0.00 0.00 0.00 3.96
737 779 3.070734 GTGGACCTGAGATGACTATGCAT 59.929 47.826 3.79 3.79 0.00 3.96
738 780 4.281941 GTGGACCTGAGATGACTATGCATA 59.718 45.833 6.20 6.20 0.00 3.14
739 781 4.525874 TGGACCTGAGATGACTATGCATAG 59.474 45.833 28.38 28.38 36.46 2.23
740 782 4.769488 GGACCTGAGATGACTATGCATAGA 59.231 45.833 34.86 17.66 34.50 1.98
741 783 5.421693 GGACCTGAGATGACTATGCATAGAT 59.578 44.000 34.86 21.26 34.50 1.98
742 784 6.283544 ACCTGAGATGACTATGCATAGATG 57.716 41.667 34.86 14.42 34.50 2.90
743 785 5.187381 ACCTGAGATGACTATGCATAGATGG 59.813 44.000 34.86 23.51 34.50 3.51
744 786 5.187381 CCTGAGATGACTATGCATAGATGGT 59.813 44.000 34.86 17.13 34.50 3.55
745 787 6.278172 TGAGATGACTATGCATAGATGGTC 57.722 41.667 34.86 23.72 35.09 4.02
746 788 5.186603 TGAGATGACTATGCATAGATGGTCC 59.813 44.000 34.86 20.29 33.92 4.46
747 789 3.942130 TGACTATGCATAGATGGTCCG 57.058 47.619 34.86 11.63 33.92 4.79
748 790 3.230976 TGACTATGCATAGATGGTCCGT 58.769 45.455 34.86 14.67 33.92 4.69
749 791 3.641436 TGACTATGCATAGATGGTCCGTT 59.359 43.478 34.86 13.23 33.92 4.44
750 792 4.238514 GACTATGCATAGATGGTCCGTTC 58.761 47.826 34.86 17.43 34.50 3.95
751 793 3.898123 ACTATGCATAGATGGTCCGTTCT 59.102 43.478 34.86 9.61 34.50 3.01
752 794 5.077564 ACTATGCATAGATGGTCCGTTCTA 58.922 41.667 34.86 4.34 34.50 2.10
753 795 4.527509 ATGCATAGATGGTCCGTTCTAG 57.472 45.455 0.00 0.00 0.00 2.43
754 796 3.296854 TGCATAGATGGTCCGTTCTAGT 58.703 45.455 7.28 0.00 0.00 2.57
755 797 3.068165 TGCATAGATGGTCCGTTCTAGTG 59.932 47.826 7.28 6.93 0.00 2.74
756 798 3.318275 GCATAGATGGTCCGTTCTAGTGA 59.682 47.826 7.28 0.00 0.00 3.41
757 799 4.793353 GCATAGATGGTCCGTTCTAGTGAC 60.793 50.000 7.28 0.00 0.00 3.67
758 800 2.803956 AGATGGTCCGTTCTAGTGACA 58.196 47.619 0.00 0.00 0.00 3.58
759 801 2.755655 AGATGGTCCGTTCTAGTGACAG 59.244 50.000 0.00 0.00 0.00 3.51
760 802 0.601558 TGGTCCGTTCTAGTGACAGC 59.398 55.000 0.00 0.00 0.00 4.40
761 803 0.601558 GGTCCGTTCTAGTGACAGCA 59.398 55.000 0.00 0.00 0.00 4.41
762 804 1.204941 GGTCCGTTCTAGTGACAGCAT 59.795 52.381 0.00 0.00 0.00 3.79
763 805 2.353803 GGTCCGTTCTAGTGACAGCATT 60.354 50.000 0.00 0.00 0.00 3.56
764 806 2.924290 GTCCGTTCTAGTGACAGCATTC 59.076 50.000 0.00 0.00 0.00 2.67
765 807 2.094182 TCCGTTCTAGTGACAGCATTCC 60.094 50.000 0.00 0.00 0.00 3.01
766 808 2.093973 CCGTTCTAGTGACAGCATTCCT 60.094 50.000 0.00 0.00 0.00 3.36
767 809 3.130516 CCGTTCTAGTGACAGCATTCCTA 59.869 47.826 0.00 0.00 0.00 2.94
768 810 4.106197 CGTTCTAGTGACAGCATTCCTAC 58.894 47.826 0.00 0.00 0.00 3.18
769 811 4.142359 CGTTCTAGTGACAGCATTCCTACT 60.142 45.833 0.00 0.00 0.00 2.57
770 812 5.622460 CGTTCTAGTGACAGCATTCCTACTT 60.622 44.000 0.00 0.00 0.00 2.24
771 813 6.166982 GTTCTAGTGACAGCATTCCTACTTT 58.833 40.000 0.00 0.00 0.00 2.66
772 814 6.360370 TCTAGTGACAGCATTCCTACTTTT 57.640 37.500 0.00 0.00 0.00 2.27
773 815 7.476540 TCTAGTGACAGCATTCCTACTTTTA 57.523 36.000 0.00 0.00 0.00 1.52
774 816 8.079211 TCTAGTGACAGCATTCCTACTTTTAT 57.921 34.615 0.00 0.00 0.00 1.40
775 817 8.540388 TCTAGTGACAGCATTCCTACTTTTATT 58.460 33.333 0.00 0.00 0.00 1.40
776 818 9.817809 CTAGTGACAGCATTCCTACTTTTATTA 57.182 33.333 0.00 0.00 0.00 0.98
778 820 9.331282 AGTGACAGCATTCCTACTTTTATTATC 57.669 33.333 0.00 0.00 0.00 1.75
779 821 9.109393 GTGACAGCATTCCTACTTTTATTATCA 57.891 33.333 0.00 0.00 0.00 2.15
780 822 9.109393 TGACAGCATTCCTACTTTTATTATCAC 57.891 33.333 0.00 0.00 0.00 3.06
797 872 9.754382 TTATTATCACGACTAATTCCCTTGTAC 57.246 33.333 0.00 0.00 0.00 2.90
816 944 6.639632 TGTACGTAGGAGAGTAAACAACTT 57.360 37.500 0.00 0.00 39.07 2.66
817 945 6.441274 TGTACGTAGGAGAGTAAACAACTTG 58.559 40.000 0.00 0.00 39.07 3.16
886 1014 1.468914 GAGCTTTCGTTGTCCCAATCC 59.531 52.381 0.00 0.00 0.00 3.01
964 1092 3.453679 GAGCGGCGGACTCTCCTT 61.454 66.667 9.78 0.00 33.30 3.36
1026 1160 2.149578 CTCTTCCACAAGCAACTCCTG 58.850 52.381 0.00 0.00 0.00 3.86
1092 1226 1.749033 CCTCTTATCCACCTCGGCC 59.251 63.158 0.00 0.00 33.14 6.13
1323 1457 1.664649 CCTCAACTGCAGCGTCGAA 60.665 57.895 15.27 0.00 0.00 3.71
1496 1630 2.158986 AGAAGTTCATCCGCATCCTCAG 60.159 50.000 5.50 0.00 0.00 3.35
1858 1992 1.892819 CTCTGGGGAGAAGCTTCGCA 61.893 60.000 27.98 15.90 41.86 5.10
2008 2142 6.435277 CCAGGAGAAAGGATTGATTCAGAAAA 59.565 38.462 0.00 0.00 0.00 2.29
2181 2315 2.744202 CCTGCTGTAGGTTCACATGTTC 59.256 50.000 3.33 0.00 42.00 3.18
2189 2323 5.934043 TGTAGGTTCACATGTTCTGAATCTG 59.066 40.000 16.62 0.00 39.09 2.90
2252 2386 1.064654 GCATTCGGAAACTCCTGATGC 59.935 52.381 11.76 11.76 41.63 3.91
2266 2400 2.341257 CTGATGCGTACTCTGCAACTT 58.659 47.619 0.00 0.00 46.87 2.66
2268 2402 1.394917 GATGCGTACTCTGCAACTTGG 59.605 52.381 0.00 0.00 46.87 3.61
2269 2403 0.602638 TGCGTACTCTGCAACTTGGG 60.603 55.000 0.00 0.00 39.87 4.12
2308 2442 6.486253 TTCTGATGAAACTCATTGTGCTAC 57.514 37.500 0.00 0.00 37.20 3.58
2351 2485 3.820557 GCTTGAGGCTACCATTTATCCA 58.179 45.455 0.00 0.00 38.06 3.41
2352 2486 3.817647 GCTTGAGGCTACCATTTATCCAG 59.182 47.826 0.00 0.00 38.06 3.86
2353 2487 3.492102 TGAGGCTACCATTTATCCAGC 57.508 47.619 0.00 0.00 0.00 4.85
2354 2488 3.048600 TGAGGCTACCATTTATCCAGCT 58.951 45.455 0.00 0.00 32.78 4.24
2355 2489 4.231273 TGAGGCTACCATTTATCCAGCTA 58.769 43.478 0.00 0.00 32.78 3.32
2356 2490 4.284490 TGAGGCTACCATTTATCCAGCTAG 59.716 45.833 0.00 0.00 32.78 3.42
2357 2491 3.584848 AGGCTACCATTTATCCAGCTAGG 59.415 47.826 0.00 0.00 39.47 3.02
2358 2492 3.328050 GGCTACCATTTATCCAGCTAGGT 59.672 47.826 0.00 0.00 39.02 3.08
2359 2493 4.202472 GGCTACCATTTATCCAGCTAGGTT 60.202 45.833 0.00 0.00 39.02 3.50
2360 2494 5.377478 GCTACCATTTATCCAGCTAGGTTT 58.623 41.667 0.00 0.00 39.02 3.27
2361 2495 5.828328 GCTACCATTTATCCAGCTAGGTTTT 59.172 40.000 0.00 0.00 39.02 2.43
2362 2496 6.321435 GCTACCATTTATCCAGCTAGGTTTTT 59.679 38.462 0.00 0.00 39.02 1.94
2417 2561 7.921786 TCTGAAATGAAAGGTACCATGTTAG 57.078 36.000 15.94 0.19 0.00 2.34
2426 2570 5.422214 AGGTACCATGTTAGAACTCTTGG 57.578 43.478 15.94 7.58 33.41 3.61
2428 2572 5.726793 AGGTACCATGTTAGAACTCTTGGAT 59.273 40.000 15.94 0.00 32.36 3.41
2442 2586 2.309755 TCTTGGATGAGTTTGCAGGGAT 59.690 45.455 0.00 0.00 0.00 3.85
2444 2588 4.018506 TCTTGGATGAGTTTGCAGGGATAA 60.019 41.667 0.00 0.00 0.00 1.75
2445 2589 3.620488 TGGATGAGTTTGCAGGGATAAC 58.380 45.455 0.00 0.00 0.00 1.89
2446 2590 3.010027 TGGATGAGTTTGCAGGGATAACA 59.990 43.478 1.37 0.00 0.00 2.41
2447 2591 3.378427 GGATGAGTTTGCAGGGATAACAC 59.622 47.826 1.37 0.00 0.00 3.32
2449 2593 3.826524 TGAGTTTGCAGGGATAACACAA 58.173 40.909 1.37 0.00 0.00 3.33
2450 2594 3.568007 TGAGTTTGCAGGGATAACACAAC 59.432 43.478 1.37 0.00 0.00 3.32
2453 2597 4.278419 AGTTTGCAGGGATAACACAACTTC 59.722 41.667 1.37 0.00 0.00 3.01
2482 2629 2.107950 TGGAGTTGTATGGGCTTTCG 57.892 50.000 0.00 0.00 0.00 3.46
2532 2680 5.009410 GGATGCTAGAATTGTGGGAAAGATG 59.991 44.000 0.00 0.00 0.00 2.90
2545 2693 2.167075 GGAAAGATGGTTGGCTCATTGG 59.833 50.000 0.00 0.00 0.00 3.16
2568 2716 6.373774 TGGTTTTTGCACTTGAACATGAAAAT 59.626 30.769 0.00 0.00 0.00 1.82
2640 2788 1.847506 ACTGCATGGGTGAGGGTGA 60.848 57.895 0.00 0.00 0.00 4.02
2670 2818 8.908786 TCCATCATACATAAATCTCAACCTTC 57.091 34.615 0.00 0.00 0.00 3.46
2694 2842 2.568623 TGGTCAGCCTTTTCCTTCTC 57.431 50.000 0.00 0.00 35.27 2.87
2715 2863 4.645535 TCTGAACCAGGAATTTGTCTCTG 58.354 43.478 0.00 0.00 31.51 3.35
2743 2891 7.254727 GCATTTTCTTCAGCTAGATGAGTTAGG 60.255 40.741 11.07 1.00 32.66 2.69
2745 2893 6.458232 TTCTTCAGCTAGATGAGTTAGGAC 57.542 41.667 11.07 0.00 32.66 3.85
2852 3001 4.814234 TGACAACCAATGTGAGTACTGAAC 59.186 41.667 0.00 0.00 44.12 3.18
2862 3011 4.931601 TGTGAGTACTGAACTTGATGCATC 59.068 41.667 20.14 20.14 39.07 3.91
2871 3023 7.112122 ACTGAACTTGATGCATCCTGTTAATA 58.888 34.615 24.66 16.61 0.00 0.98
2896 3048 6.756542 AGTTGCTATGTTTTTCAGTTTTGACC 59.243 34.615 0.00 0.00 31.71 4.02
2903 3055 6.616947 TGTTTTTCAGTTTTGACCTGTACTG 58.383 36.000 0.00 0.00 39.41 2.74
2936 3088 1.168714 ATTTGAAACTCGGCTGGCTC 58.831 50.000 0.00 0.00 0.00 4.70
2953 3105 3.056250 TGGCTCAGAATTGACACTCTCTC 60.056 47.826 0.00 0.00 0.00 3.20
2957 3109 2.922387 CAGAATTGACACTCTCTCGCTG 59.078 50.000 0.00 0.00 0.00 5.18
3001 3153 1.210478 GAAGCTCCTCATAGGCCACAA 59.790 52.381 5.01 0.00 34.61 3.33
3054 3207 4.699637 TCTGTTTACACGTTTGAGATGGT 58.300 39.130 0.00 0.00 0.00 3.55
3073 3233 3.830755 TGGTTGTTACTCTGGAGTAGTCC 59.169 47.826 9.91 9.91 43.92 3.85
3090 3250 1.377333 CCTTGGGGGAAGCTTCGTC 60.377 63.158 19.91 14.02 37.23 4.20
3091 3251 1.377333 CTTGGGGGAAGCTTCGTCC 60.377 63.158 19.91 21.37 0.00 4.79
3093 3253 3.387947 GGGGGAAGCTTCGTCCGA 61.388 66.667 19.91 0.00 35.86 4.55
3097 3257 0.249114 GGGAAGCTTCGTCCGATCTC 60.249 60.000 19.91 2.88 35.86 2.75
3115 3275 2.743718 CCAGTTCCTCAGCACCGT 59.256 61.111 0.00 0.00 0.00 4.83
3122 3282 2.401766 CCTCAGCACCGTGATTGGC 61.402 63.158 1.65 0.00 0.00 4.52
3127 3287 2.431771 CACCGTGATTGGCGTCGA 60.432 61.111 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.224867 GGCATGCCCACTGATATAGGTT 60.225 50.000 27.24 0.00 0.00 3.50
175 177 6.385649 AAGTCATCGGTTTTCTTTAGCAAA 57.614 33.333 0.00 0.00 0.00 3.68
275 308 0.662619 CTGCTGTTCGTCAAAGCCAA 59.337 50.000 0.00 0.00 36.05 4.52
312 346 6.458751 CCATCAATCACCCATTTACTCTTTCG 60.459 42.308 0.00 0.00 0.00 3.46
313 347 6.378280 ACCATCAATCACCCATTTACTCTTTC 59.622 38.462 0.00 0.00 0.00 2.62
314 348 6.153340 CACCATCAATCACCCATTTACTCTTT 59.847 38.462 0.00 0.00 0.00 2.52
315 349 5.653769 CACCATCAATCACCCATTTACTCTT 59.346 40.000 0.00 0.00 0.00 2.85
316 350 5.195940 CACCATCAATCACCCATTTACTCT 58.804 41.667 0.00 0.00 0.00 3.24
317 351 4.339247 CCACCATCAATCACCCATTTACTC 59.661 45.833 0.00 0.00 0.00 2.59
318 352 4.280819 CCACCATCAATCACCCATTTACT 58.719 43.478 0.00 0.00 0.00 2.24
327 361 2.032550 CAGAATCGCCACCATCAATCAC 59.967 50.000 0.00 0.00 0.00 3.06
347 381 3.266772 AGATCAGTGGGATTAAAGTGGCA 59.733 43.478 0.00 0.00 36.00 4.92
406 441 3.423539 TCTTGTTGGCAGCATAGAACT 57.576 42.857 4.45 0.00 0.00 3.01
408 443 5.887598 ACATATTCTTGTTGGCAGCATAGAA 59.112 36.000 21.27 21.27 0.00 2.10
430 465 2.427889 GGGGATCCAATCTCTCCCTACA 60.428 54.545 15.23 0.00 46.67 2.74
436 471 2.436173 AGAAACGGGGATCCAATCTCTC 59.564 50.000 15.23 2.57 0.00 3.20
452 494 3.003480 GTCAGGTGCACCTATCAGAAAC 58.997 50.000 37.27 20.72 46.65 2.78
454 496 2.256306 TGTCAGGTGCACCTATCAGAA 58.744 47.619 37.27 17.04 46.65 3.02
455 497 1.937191 TGTCAGGTGCACCTATCAGA 58.063 50.000 37.27 26.51 46.65 3.27
456 498 2.558378 CATGTCAGGTGCACCTATCAG 58.442 52.381 37.27 24.65 46.65 2.90
457 499 1.210234 CCATGTCAGGTGCACCTATCA 59.790 52.381 37.27 33.35 46.65 2.15
458 500 1.959042 CCATGTCAGGTGCACCTATC 58.041 55.000 37.27 29.46 46.65 2.08
459 501 0.107017 GCCATGTCAGGTGCACCTAT 60.107 55.000 37.27 24.56 46.65 2.57
460 502 1.299648 GCCATGTCAGGTGCACCTA 59.700 57.895 37.27 23.35 46.65 3.08
462 504 1.252904 AATGCCATGTCAGGTGCACC 61.253 55.000 29.22 29.22 36.41 5.01
463 505 0.604578 AAATGCCATGTCAGGTGCAC 59.395 50.000 8.80 8.80 36.41 4.57
464 506 0.889994 GAAATGCCATGTCAGGTGCA 59.110 50.000 3.68 3.68 38.23 4.57
465 507 0.174162 GGAAATGCCATGTCAGGTGC 59.826 55.000 0.00 0.00 36.34 5.01
466 508 1.548081 TGGAAATGCCATGTCAGGTG 58.452 50.000 0.00 0.00 43.33 4.00
512 554 0.312102 GCAAGAGACTTGGTGGCAAC 59.688 55.000 12.36 0.00 0.00 4.17
513 555 0.183492 AGCAAGAGACTTGGTGGCAA 59.817 50.000 13.95 0.00 0.00 4.52
514 556 0.250467 GAGCAAGAGACTTGGTGGCA 60.250 55.000 18.42 0.00 0.00 4.92
515 557 0.957888 GGAGCAAGAGACTTGGTGGC 60.958 60.000 18.42 7.22 0.00 5.01
516 558 0.689623 AGGAGCAAGAGACTTGGTGG 59.310 55.000 18.42 0.00 0.00 4.61
517 559 3.902881 ATAGGAGCAAGAGACTTGGTG 57.097 47.619 18.42 0.00 0.00 4.17
518 560 5.627968 GCTTAATAGGAGCAAGAGACTTGGT 60.628 44.000 14.48 14.48 39.89 3.67
519 561 4.813697 GCTTAATAGGAGCAAGAGACTTGG 59.186 45.833 12.36 0.00 39.89 3.61
520 562 5.669477 AGCTTAATAGGAGCAAGAGACTTG 58.331 41.667 7.07 7.07 42.56 3.16
521 563 5.423610 TGAGCTTAATAGGAGCAAGAGACTT 59.576 40.000 0.00 0.00 42.56 3.01
522 564 4.959210 TGAGCTTAATAGGAGCAAGAGACT 59.041 41.667 0.00 0.00 42.56 3.24
523 565 5.269505 TGAGCTTAATAGGAGCAAGAGAC 57.730 43.478 0.00 0.00 42.56 3.36
524 566 5.395768 GGTTGAGCTTAATAGGAGCAAGAGA 60.396 44.000 0.00 0.00 42.56 3.10
525 567 4.813697 GGTTGAGCTTAATAGGAGCAAGAG 59.186 45.833 0.00 0.00 42.56 2.85
526 568 4.471386 AGGTTGAGCTTAATAGGAGCAAGA 59.529 41.667 0.00 0.00 42.56 3.02
527 569 4.775236 AGGTTGAGCTTAATAGGAGCAAG 58.225 43.478 0.00 0.00 42.56 4.01
528 570 4.844349 AGGTTGAGCTTAATAGGAGCAA 57.156 40.909 0.00 0.00 42.56 3.91
529 571 4.844349 AAGGTTGAGCTTAATAGGAGCA 57.156 40.909 0.00 0.00 42.56 4.26
530 572 5.919755 ACTAAGGTTGAGCTTAATAGGAGC 58.080 41.667 0.00 0.00 40.43 4.70
531 573 8.466617 TCTACTAAGGTTGAGCTTAATAGGAG 57.533 38.462 14.63 7.49 0.00 3.69
532 574 8.834004 TTCTACTAAGGTTGAGCTTAATAGGA 57.166 34.615 14.63 6.88 0.00 2.94
533 575 8.697292 ACTTCTACTAAGGTTGAGCTTAATAGG 58.303 37.037 14.63 6.13 0.00 2.57
534 576 9.522804 CACTTCTACTAAGGTTGAGCTTAATAG 57.477 37.037 10.54 10.54 0.00 1.73
535 577 8.475639 CCACTTCTACTAAGGTTGAGCTTAATA 58.524 37.037 0.00 0.00 0.00 0.98
536 578 7.331791 CCACTTCTACTAAGGTTGAGCTTAAT 58.668 38.462 0.00 0.00 0.00 1.40
537 579 6.295688 CCCACTTCTACTAAGGTTGAGCTTAA 60.296 42.308 4.45 0.00 0.00 1.85
538 580 5.187186 CCCACTTCTACTAAGGTTGAGCTTA 59.813 44.000 3.01 3.01 0.00 3.09
539 581 4.020128 CCCACTTCTACTAAGGTTGAGCTT 60.020 45.833 0.80 0.80 0.00 3.74
540 582 3.515901 CCCACTTCTACTAAGGTTGAGCT 59.484 47.826 0.00 0.00 0.00 4.09
541 583 3.863041 CCCACTTCTACTAAGGTTGAGC 58.137 50.000 0.00 0.00 0.00 4.26
542 584 3.260884 TGCCCACTTCTACTAAGGTTGAG 59.739 47.826 0.00 0.00 0.00 3.02
543 585 3.244582 TGCCCACTTCTACTAAGGTTGA 58.755 45.455 0.00 0.00 0.00 3.18
544 586 3.695830 TGCCCACTTCTACTAAGGTTG 57.304 47.619 0.00 0.00 0.00 3.77
545 587 3.556423 CGTTGCCCACTTCTACTAAGGTT 60.556 47.826 0.00 0.00 0.00 3.50
546 588 2.028385 CGTTGCCCACTTCTACTAAGGT 60.028 50.000 0.00 0.00 0.00 3.50
547 589 2.618053 CGTTGCCCACTTCTACTAAGG 58.382 52.381 0.00 0.00 0.00 2.69
548 590 2.618053 CCGTTGCCCACTTCTACTAAG 58.382 52.381 0.00 0.00 0.00 2.18
549 591 1.338389 GCCGTTGCCCACTTCTACTAA 60.338 52.381 0.00 0.00 0.00 2.24
550 592 0.248289 GCCGTTGCCCACTTCTACTA 59.752 55.000 0.00 0.00 0.00 1.82
551 593 1.003718 GCCGTTGCCCACTTCTACT 60.004 57.895 0.00 0.00 0.00 2.57
552 594 0.676782 ATGCCGTTGCCCACTTCTAC 60.677 55.000 0.00 0.00 36.33 2.59
553 595 0.037590 AATGCCGTTGCCCACTTCTA 59.962 50.000 0.00 0.00 36.33 2.10
554 596 1.228552 AATGCCGTTGCCCACTTCT 60.229 52.632 0.00 0.00 36.33 2.85
555 597 1.080569 CAATGCCGTTGCCCACTTC 60.081 57.895 0.00 0.00 36.33 3.01
556 598 2.573083 CCAATGCCGTTGCCCACTT 61.573 57.895 0.00 0.00 36.46 3.16
557 599 2.990967 CCAATGCCGTTGCCCACT 60.991 61.111 0.00 0.00 36.46 4.00
558 600 4.067913 CCCAATGCCGTTGCCCAC 62.068 66.667 0.00 0.00 36.46 4.61
559 601 4.612279 ACCCAATGCCGTTGCCCA 62.612 61.111 0.00 0.00 36.46 5.36
560 602 4.067913 CACCCAATGCCGTTGCCC 62.068 66.667 0.00 0.00 36.46 5.36
561 603 4.067913 CCACCCAATGCCGTTGCC 62.068 66.667 0.00 0.00 36.46 4.52
562 604 2.988684 TCCACCCAATGCCGTTGC 60.989 61.111 0.00 0.00 36.46 4.17
563 605 1.865788 CTGTCCACCCAATGCCGTTG 61.866 60.000 0.00 0.00 37.57 4.10
564 606 1.603455 CTGTCCACCCAATGCCGTT 60.603 57.895 0.00 0.00 0.00 4.44
565 607 2.034066 CTGTCCACCCAATGCCGT 59.966 61.111 0.00 0.00 0.00 5.68
566 608 2.034066 ACTGTCCACCCAATGCCG 59.966 61.111 0.00 0.00 0.00 5.69
567 609 0.618458 TAGACTGTCCACCCAATGCC 59.382 55.000 3.76 0.00 0.00 4.40
568 610 2.565841 GATAGACTGTCCACCCAATGC 58.434 52.381 3.76 0.00 0.00 3.56
569 611 2.483714 CGGATAGACTGTCCACCCAATG 60.484 54.545 17.47 0.00 35.41 2.82
570 612 1.762957 CGGATAGACTGTCCACCCAAT 59.237 52.381 17.47 0.00 35.41 3.16
571 613 1.191535 CGGATAGACTGTCCACCCAA 58.808 55.000 17.47 0.00 35.41 4.12
572 614 1.327690 GCGGATAGACTGTCCACCCA 61.328 60.000 17.47 0.00 35.41 4.51
573 615 1.442148 GCGGATAGACTGTCCACCC 59.558 63.158 17.47 2.30 35.41 4.61
574 616 1.442148 GGCGGATAGACTGTCCACC 59.558 63.158 17.47 13.50 35.41 4.61
578 620 2.694109 ACTTAAGGGCGGATAGACTGTC 59.306 50.000 7.53 0.00 0.00 3.51
579 621 2.431057 CACTTAAGGGCGGATAGACTGT 59.569 50.000 7.53 0.00 0.00 3.55
580 622 2.224066 CCACTTAAGGGCGGATAGACTG 60.224 54.545 7.53 0.00 0.00 3.51
581 623 2.040178 CCACTTAAGGGCGGATAGACT 58.960 52.381 7.53 0.00 0.00 3.24
582 624 1.761198 ACCACTTAAGGGCGGATAGAC 59.239 52.381 7.53 0.00 0.00 2.59
583 625 2.170012 ACCACTTAAGGGCGGATAGA 57.830 50.000 7.53 0.00 0.00 1.98
584 626 4.618920 AATACCACTTAAGGGCGGATAG 57.381 45.455 7.53 0.00 0.00 2.08
585 627 4.284234 GGTAATACCACTTAAGGGCGGATA 59.716 45.833 7.53 1.28 38.42 2.59
586 628 3.072038 GGTAATACCACTTAAGGGCGGAT 59.928 47.826 7.53 0.00 38.42 4.18
587 629 2.435437 GGTAATACCACTTAAGGGCGGA 59.565 50.000 7.53 0.00 38.42 5.54
588 630 2.171027 TGGTAATACCACTTAAGGGCGG 59.829 50.000 8.27 6.85 44.79 6.13
589 631 3.463944 CTGGTAATACCACTTAAGGGCG 58.536 50.000 8.27 0.00 44.79 6.13
590 632 3.211865 GCTGGTAATACCACTTAAGGGC 58.788 50.000 8.27 4.97 44.79 5.19
591 633 3.201266 TGGCTGGTAATACCACTTAAGGG 59.799 47.826 8.27 1.71 44.79 3.95
592 634 4.497291 TGGCTGGTAATACCACTTAAGG 57.503 45.455 8.27 0.00 44.79 2.69
593 635 6.260936 CAGAATGGCTGGTAATACCACTTAAG 59.739 42.308 8.27 0.00 44.79 1.85
594 636 6.119536 CAGAATGGCTGGTAATACCACTTAA 58.880 40.000 8.27 0.00 44.79 1.85
595 637 5.680619 CAGAATGGCTGGTAATACCACTTA 58.319 41.667 8.27 0.00 44.79 2.24
596 638 4.526970 CAGAATGGCTGGTAATACCACTT 58.473 43.478 8.27 0.18 44.79 3.16
597 639 4.156455 CAGAATGGCTGGTAATACCACT 57.844 45.455 8.27 0.00 44.79 4.00
612 654 2.775911 TCAACTGCTCCTCCAGAATG 57.224 50.000 0.00 0.00 36.67 2.67
613 655 4.313020 AAATCAACTGCTCCTCCAGAAT 57.687 40.909 0.00 0.00 36.67 2.40
614 656 3.795688 AAATCAACTGCTCCTCCAGAA 57.204 42.857 0.00 0.00 36.67 3.02
615 657 3.369892 GCTAAATCAACTGCTCCTCCAGA 60.370 47.826 0.00 0.00 36.67 3.86
616 658 2.941720 GCTAAATCAACTGCTCCTCCAG 59.058 50.000 0.00 0.00 38.78 3.86
617 659 2.305635 TGCTAAATCAACTGCTCCTCCA 59.694 45.455 0.00 0.00 0.00 3.86
618 660 2.991250 TGCTAAATCAACTGCTCCTCC 58.009 47.619 0.00 0.00 0.00 4.30
619 661 5.573337 AATTGCTAAATCAACTGCTCCTC 57.427 39.130 0.00 0.00 0.00 3.71
620 662 5.990120 AAATTGCTAAATCAACTGCTCCT 57.010 34.783 0.00 0.00 0.00 3.69
621 663 7.814587 ACTAAAAATTGCTAAATCAACTGCTCC 59.185 33.333 0.00 0.00 0.00 4.70
622 664 8.748380 ACTAAAAATTGCTAAATCAACTGCTC 57.252 30.769 0.00 0.00 0.00 4.26
623 665 8.579863 AGACTAAAAATTGCTAAATCAACTGCT 58.420 29.630 0.00 0.00 0.00 4.24
624 666 8.748380 AGACTAAAAATTGCTAAATCAACTGC 57.252 30.769 0.00 0.00 0.00 4.40
635 677 9.118300 CCTGATAGATGAAGACTAAAAATTGCT 57.882 33.333 0.00 0.00 0.00 3.91
636 678 8.897752 ACCTGATAGATGAAGACTAAAAATTGC 58.102 33.333 0.00 0.00 0.00 3.56
645 687 9.152327 TGATGAAATACCTGATAGATGAAGACT 57.848 33.333 0.00 0.00 0.00 3.24
646 688 9.770097 TTGATGAAATACCTGATAGATGAAGAC 57.230 33.333 0.00 0.00 0.00 3.01
657 699 9.753674 AGAACCTAAAATTGATGAAATACCTGA 57.246 29.630 0.00 0.00 0.00 3.86
689 731 9.767684 CGCATGTTGAAGATAGTTGTTATAAAA 57.232 29.630 0.00 0.00 0.00 1.52
690 732 8.941977 ACGCATGTTGAAGATAGTTGTTATAAA 58.058 29.630 0.00 0.00 0.00 1.40
691 733 8.387354 CACGCATGTTGAAGATAGTTGTTATAA 58.613 33.333 0.00 0.00 0.00 0.98
692 734 7.011016 CCACGCATGTTGAAGATAGTTGTTATA 59.989 37.037 0.00 0.00 0.00 0.98
693 735 6.183360 CCACGCATGTTGAAGATAGTTGTTAT 60.183 38.462 0.00 0.00 0.00 1.89
694 736 5.121611 CCACGCATGTTGAAGATAGTTGTTA 59.878 40.000 0.00 0.00 0.00 2.41
695 737 4.083324 CCACGCATGTTGAAGATAGTTGTT 60.083 41.667 0.00 0.00 0.00 2.83
696 738 3.436704 CCACGCATGTTGAAGATAGTTGT 59.563 43.478 0.00 0.00 0.00 3.32
697 739 3.684305 TCCACGCATGTTGAAGATAGTTG 59.316 43.478 0.00 0.00 0.00 3.16
698 740 3.684788 GTCCACGCATGTTGAAGATAGTT 59.315 43.478 0.00 0.00 0.00 2.24
699 741 3.262420 GTCCACGCATGTTGAAGATAGT 58.738 45.455 0.00 0.00 0.00 2.12
700 742 2.609459 GGTCCACGCATGTTGAAGATAG 59.391 50.000 0.00 0.00 0.00 2.08
701 743 2.236146 AGGTCCACGCATGTTGAAGATA 59.764 45.455 0.00 0.00 0.00 1.98
702 744 1.003580 AGGTCCACGCATGTTGAAGAT 59.996 47.619 0.00 0.00 0.00 2.40
703 745 0.396435 AGGTCCACGCATGTTGAAGA 59.604 50.000 0.00 0.00 0.00 2.87
704 746 0.518636 CAGGTCCACGCATGTTGAAG 59.481 55.000 0.00 0.00 0.00 3.02
705 747 0.107643 TCAGGTCCACGCATGTTGAA 59.892 50.000 0.00 0.00 0.00 2.69
706 748 0.320683 CTCAGGTCCACGCATGTTGA 60.321 55.000 0.00 0.00 0.00 3.18
707 749 0.320683 TCTCAGGTCCACGCATGTTG 60.321 55.000 0.00 0.00 0.00 3.33
708 750 0.615331 ATCTCAGGTCCACGCATGTT 59.385 50.000 0.00 0.00 0.00 2.71
709 751 0.107993 CATCTCAGGTCCACGCATGT 60.108 55.000 0.00 0.00 0.00 3.21
710 752 0.176449 TCATCTCAGGTCCACGCATG 59.824 55.000 0.00 0.00 0.00 4.06
711 753 0.176680 GTCATCTCAGGTCCACGCAT 59.823 55.000 0.00 0.00 0.00 4.73
712 754 0.900182 AGTCATCTCAGGTCCACGCA 60.900 55.000 0.00 0.00 0.00 5.24
713 755 1.103803 TAGTCATCTCAGGTCCACGC 58.896 55.000 0.00 0.00 0.00 5.34
714 756 2.544694 GCATAGTCATCTCAGGTCCACG 60.545 54.545 0.00 0.00 0.00 4.94
715 757 2.432146 TGCATAGTCATCTCAGGTCCAC 59.568 50.000 0.00 0.00 0.00 4.02
716 758 2.750814 TGCATAGTCATCTCAGGTCCA 58.249 47.619 0.00 0.00 0.00 4.02
717 759 4.769488 TCTATGCATAGTCATCTCAGGTCC 59.231 45.833 28.51 0.00 0.00 4.46
718 760 5.973899 TCTATGCATAGTCATCTCAGGTC 57.026 43.478 28.51 0.00 0.00 3.85
719 761 5.187381 CCATCTATGCATAGTCATCTCAGGT 59.813 44.000 28.51 0.47 0.00 4.00
720 762 5.187381 ACCATCTATGCATAGTCATCTCAGG 59.813 44.000 28.51 20.54 0.00 3.86
721 763 6.283544 ACCATCTATGCATAGTCATCTCAG 57.716 41.667 28.51 14.44 0.00 3.35
722 764 5.186603 GGACCATCTATGCATAGTCATCTCA 59.813 44.000 28.51 11.74 0.00 3.27
723 765 5.659463 GGACCATCTATGCATAGTCATCTC 58.341 45.833 28.51 18.08 0.00 2.75
724 766 4.159321 CGGACCATCTATGCATAGTCATCT 59.841 45.833 28.51 12.02 0.00 2.90
725 767 4.081972 ACGGACCATCTATGCATAGTCATC 60.082 45.833 28.51 21.05 0.00 2.92
726 768 3.834813 ACGGACCATCTATGCATAGTCAT 59.165 43.478 28.51 15.95 0.00 3.06
727 769 3.230976 ACGGACCATCTATGCATAGTCA 58.769 45.455 28.51 14.44 0.00 3.41
728 770 3.944055 ACGGACCATCTATGCATAGTC 57.056 47.619 28.51 20.36 0.00 2.59
729 771 3.898123 AGAACGGACCATCTATGCATAGT 59.102 43.478 28.51 13.87 0.00 2.12
730 772 4.527509 AGAACGGACCATCTATGCATAG 57.472 45.455 25.13 25.13 0.00 2.23
731 773 5.048013 CACTAGAACGGACCATCTATGCATA 60.048 44.000 6.20 6.20 0.00 3.14
732 774 3.898123 ACTAGAACGGACCATCTATGCAT 59.102 43.478 3.79 3.79 0.00 3.96
733 775 3.068165 CACTAGAACGGACCATCTATGCA 59.932 47.826 0.00 0.00 0.00 3.96
734 776 3.318275 TCACTAGAACGGACCATCTATGC 59.682 47.826 0.00 0.00 0.00 3.14
735 777 4.338400 TGTCACTAGAACGGACCATCTATG 59.662 45.833 0.00 6.16 0.00 2.23
736 778 4.533815 TGTCACTAGAACGGACCATCTAT 58.466 43.478 0.00 0.00 0.00 1.98
737 779 3.945921 CTGTCACTAGAACGGACCATCTA 59.054 47.826 0.00 4.42 0.00 1.98
738 780 2.755655 CTGTCACTAGAACGGACCATCT 59.244 50.000 0.00 2.60 0.00 2.90
739 781 2.735762 GCTGTCACTAGAACGGACCATC 60.736 54.545 11.46 0.00 0.00 3.51
740 782 1.204941 GCTGTCACTAGAACGGACCAT 59.795 52.381 11.46 0.00 0.00 3.55
741 783 0.601558 GCTGTCACTAGAACGGACCA 59.398 55.000 11.46 0.00 0.00 4.02
742 784 0.601558 TGCTGTCACTAGAACGGACC 59.398 55.000 11.46 0.00 0.00 4.46
743 785 2.656560 ATGCTGTCACTAGAACGGAC 57.343 50.000 11.46 7.16 0.00 4.79
744 786 2.094182 GGAATGCTGTCACTAGAACGGA 60.094 50.000 11.46 2.43 0.00 4.69
745 787 2.093973 AGGAATGCTGTCACTAGAACGG 60.094 50.000 0.00 0.38 0.00 4.44
746 788 3.238108 AGGAATGCTGTCACTAGAACG 57.762 47.619 0.00 0.00 0.00 3.95
747 789 5.331876 AGTAGGAATGCTGTCACTAGAAC 57.668 43.478 0.00 0.00 0.00 3.01
748 790 6.360370 AAAGTAGGAATGCTGTCACTAGAA 57.640 37.500 0.00 0.00 0.00 2.10
749 791 6.360370 AAAAGTAGGAATGCTGTCACTAGA 57.640 37.500 0.00 0.00 0.00 2.43
750 792 8.723942 AATAAAAGTAGGAATGCTGTCACTAG 57.276 34.615 0.00 0.00 0.00 2.57
752 794 9.331282 GATAATAAAAGTAGGAATGCTGTCACT 57.669 33.333 0.00 0.00 0.00 3.41
753 795 9.109393 TGATAATAAAAGTAGGAATGCTGTCAC 57.891 33.333 0.00 0.00 0.00 3.67
754 796 9.109393 GTGATAATAAAAGTAGGAATGCTGTCA 57.891 33.333 0.00 0.00 0.00 3.58
755 797 8.276325 CGTGATAATAAAAGTAGGAATGCTGTC 58.724 37.037 0.00 0.00 0.00 3.51
756 798 7.985184 TCGTGATAATAAAAGTAGGAATGCTGT 59.015 33.333 0.00 0.00 0.00 4.40
757 799 8.276325 GTCGTGATAATAAAAGTAGGAATGCTG 58.724 37.037 0.00 0.00 0.00 4.41
758 800 8.204836 AGTCGTGATAATAAAAGTAGGAATGCT 58.795 33.333 0.00 0.00 0.00 3.79
759 801 8.366671 AGTCGTGATAATAAAAGTAGGAATGC 57.633 34.615 0.00 0.00 0.00 3.56
767 809 9.901172 AAGGGAATTAGTCGTGATAATAAAAGT 57.099 29.630 0.00 0.00 0.00 2.66
769 811 9.675464 ACAAGGGAATTAGTCGTGATAATAAAA 57.325 29.630 0.00 0.00 0.00 1.52
771 813 9.754382 GTACAAGGGAATTAGTCGTGATAATAA 57.246 33.333 0.00 0.00 0.00 1.40
772 814 8.077991 CGTACAAGGGAATTAGTCGTGATAATA 58.922 37.037 0.00 0.00 0.00 0.98
773 815 6.921857 CGTACAAGGGAATTAGTCGTGATAAT 59.078 38.462 0.00 0.00 0.00 1.28
774 816 6.127647 ACGTACAAGGGAATTAGTCGTGATAA 60.128 38.462 0.00 0.00 0.00 1.75
775 817 5.357878 ACGTACAAGGGAATTAGTCGTGATA 59.642 40.000 0.00 0.00 0.00 2.15
776 818 4.159135 ACGTACAAGGGAATTAGTCGTGAT 59.841 41.667 0.00 0.00 0.00 3.06
777 819 3.507233 ACGTACAAGGGAATTAGTCGTGA 59.493 43.478 0.00 0.00 0.00 4.35
778 820 3.841643 ACGTACAAGGGAATTAGTCGTG 58.158 45.455 0.00 0.00 0.00 4.35
779 821 4.096984 CCTACGTACAAGGGAATTAGTCGT 59.903 45.833 3.72 0.00 0.00 4.34
780 822 4.336433 TCCTACGTACAAGGGAATTAGTCG 59.664 45.833 10.57 0.00 34.66 4.18
797 872 5.287226 ACACAAGTTGTTTACTCTCCTACG 58.713 41.667 5.57 0.00 33.09 3.51
816 944 5.554437 TGACACCACTTTATTCCTACACA 57.446 39.130 0.00 0.00 0.00 3.72
817 945 7.448748 AAATGACACCACTTTATTCCTACAC 57.551 36.000 0.00 0.00 0.00 2.90
886 1014 1.540267 TCCTACAATTTGTTGGGCCG 58.460 50.000 23.78 4.89 42.31 6.13
964 1092 0.177141 GCGGTGGAGTAGGTATTGCA 59.823 55.000 0.00 0.00 0.00 4.08
1323 1457 2.115266 CGGGCCTTGAGGGTGTTT 59.885 61.111 0.84 0.00 37.43 2.83
1496 1630 0.102663 GAGGAGGTAGTAGTTGCGCC 59.897 60.000 4.18 0.00 0.00 6.53
1696 1830 1.227943 TCACTGCCTGCCTGAACAC 60.228 57.895 0.00 0.00 0.00 3.32
1743 1877 1.033746 GCTTGAGCTTGGCTGCCATA 61.034 55.000 24.03 12.36 39.88 2.74
1858 1992 1.903183 GGTCAGGAACTCCTTAGCACT 59.097 52.381 4.60 0.00 46.09 4.40
2008 2142 4.991153 TCATCGTGTAGAAGCTCTGATT 57.009 40.909 0.00 0.00 0.00 2.57
2181 2315 7.255035 CCATTTAGATGGTTAGTGCAGATTCAG 60.255 40.741 4.06 0.00 46.48 3.02
2241 2375 1.134965 GCAGAGTACGCATCAGGAGTT 60.135 52.381 0.00 0.00 0.00 3.01
2252 2386 0.320771 AGCCCAAGTTGCAGAGTACG 60.321 55.000 0.00 0.00 0.00 3.67
2266 2400 1.565390 ATTCAGGTGCTAGCAGCCCA 61.565 55.000 36.39 23.68 44.62 5.36
2268 2402 1.020437 GAATTCAGGTGCTAGCAGCC 58.980 55.000 36.39 28.53 44.62 4.85
2269 2403 1.669779 CAGAATTCAGGTGCTAGCAGC 59.330 52.381 34.15 34.15 43.95 5.25
2308 2442 5.069251 AGCTGGGCACTATAAGTTAGTACTG 59.931 44.000 5.39 0.00 34.01 2.74
2362 2496 3.451141 AGCTGCATTCCGTTTCAAAAA 57.549 38.095 1.02 0.00 0.00 1.94
2363 2497 3.057596 CCTAGCTGCATTCCGTTTCAAAA 60.058 43.478 1.02 0.00 0.00 2.44
2364 2498 2.487762 CCTAGCTGCATTCCGTTTCAAA 59.512 45.455 1.02 0.00 0.00 2.69
2365 2499 2.083774 CCTAGCTGCATTCCGTTTCAA 58.916 47.619 1.02 0.00 0.00 2.69
2366 2500 1.003118 ACCTAGCTGCATTCCGTTTCA 59.997 47.619 1.02 0.00 0.00 2.69
2367 2501 1.739067 ACCTAGCTGCATTCCGTTTC 58.261 50.000 1.02 0.00 0.00 2.78
2368 2502 2.200373 AACCTAGCTGCATTCCGTTT 57.800 45.000 1.02 0.00 0.00 3.60
2369 2503 1.812571 CAAACCTAGCTGCATTCCGTT 59.187 47.619 1.02 0.00 0.00 4.44
2370 2504 1.453155 CAAACCTAGCTGCATTCCGT 58.547 50.000 1.02 0.00 0.00 4.69
2371 2505 0.734889 CCAAACCTAGCTGCATTCCG 59.265 55.000 1.02 0.00 0.00 4.30
2372 2506 2.128771 TCCAAACCTAGCTGCATTCC 57.871 50.000 1.02 0.00 0.00 3.01
2373 2507 3.950395 AGAATCCAAACCTAGCTGCATTC 59.050 43.478 1.02 0.00 0.00 2.67
2374 2508 3.698040 CAGAATCCAAACCTAGCTGCATT 59.302 43.478 1.02 0.00 0.00 3.56
2375 2509 3.054139 TCAGAATCCAAACCTAGCTGCAT 60.054 43.478 1.02 0.00 0.00 3.96
2376 2510 2.305635 TCAGAATCCAAACCTAGCTGCA 59.694 45.455 1.02 0.00 0.00 4.41
2377 2511 2.991250 TCAGAATCCAAACCTAGCTGC 58.009 47.619 0.00 0.00 0.00 5.25
2426 2570 4.009675 TGTGTTATCCCTGCAAACTCATC 58.990 43.478 0.35 0.00 0.00 2.92
2428 2572 3.500448 TGTGTTATCCCTGCAAACTCA 57.500 42.857 0.35 0.25 0.00 3.41
2442 2586 6.982852 TCCAAAACAAACAGAAGTTGTGTTA 58.017 32.000 17.79 0.00 40.74 2.41
2444 2588 5.010617 ACTCCAAAACAAACAGAAGTTGTGT 59.989 36.000 0.00 0.00 40.74 3.72
2445 2589 5.469479 ACTCCAAAACAAACAGAAGTTGTG 58.531 37.500 0.00 0.00 40.74 3.33
2446 2590 5.722021 ACTCCAAAACAAACAGAAGTTGT 57.278 34.783 0.00 0.00 43.45 3.32
2447 2591 5.925969 ACAACTCCAAAACAAACAGAAGTTG 59.074 36.000 9.63 9.63 38.17 3.16
2449 2593 5.722021 ACAACTCCAAAACAAACAGAAGT 57.278 34.783 0.00 0.00 0.00 3.01
2450 2594 6.697019 CCATACAACTCCAAAACAAACAGAAG 59.303 38.462 0.00 0.00 0.00 2.85
2453 2597 5.288804 CCCATACAACTCCAAAACAAACAG 58.711 41.667 0.00 0.00 0.00 3.16
2506 2653 1.140852 TCCCACAATTCTAGCATCCGG 59.859 52.381 0.00 0.00 0.00 5.14
2532 2680 1.872952 GCAAAAACCAATGAGCCAACC 59.127 47.619 0.00 0.00 0.00 3.77
2545 2693 7.687445 AGATTTTCATGTTCAAGTGCAAAAAC 58.313 30.769 0.00 0.00 0.00 2.43
2640 2788 9.664332 GTTGAGATTTATGTATGATGGATAGCT 57.336 33.333 0.00 0.00 0.00 3.32
2670 2818 1.005215 AGGAAAAGGCTGACCATGGAG 59.995 52.381 21.47 7.51 39.06 3.86
2694 2842 4.645535 TCAGAGACAAATTCCTGGTTCAG 58.354 43.478 0.00 0.00 0.00 3.02
2715 2863 5.816777 ACTCATCTAGCTGAAGAAAATGCTC 59.183 40.000 0.00 0.00 37.02 4.26
2809 2957 5.298276 TGTCAAACCAAACTTAGTGGATGAC 59.702 40.000 18.54 18.54 45.81 3.06
2852 3001 6.039047 AGCAACTATTAACAGGATGCATCAAG 59.961 38.462 27.25 20.12 42.53 3.02
2862 3011 9.559958 CTGAAAAACATAGCAACTATTAACAGG 57.440 33.333 0.00 0.00 0.00 4.00
2871 3023 6.756542 GGTCAAAACTGAAAAACATAGCAACT 59.243 34.615 0.00 0.00 0.00 3.16
2886 3038 6.867662 AAGATTCAGTACAGGTCAAAACTG 57.132 37.500 0.00 0.00 40.54 3.16
2896 3048 7.121168 TCAAATAAGCCCAAAGATTCAGTACAG 59.879 37.037 0.00 0.00 0.00 2.74
2903 3055 6.528072 CGAGTTTCAAATAAGCCCAAAGATTC 59.472 38.462 0.00 0.00 0.00 2.52
2936 3088 2.922387 CAGCGAGAGAGTGTCAATTCTG 59.078 50.000 0.00 0.00 0.00 3.02
2953 3105 1.634753 CATCAGCATCGACACAGCG 59.365 57.895 0.00 0.00 0.00 5.18
2957 3109 0.723414 CACACCATCAGCATCGACAC 59.277 55.000 0.00 0.00 0.00 3.67
3001 3153 9.706691 CAAAATATATCGACTTACCATACCAGT 57.293 33.333 0.00 0.00 0.00 4.00
3054 3207 4.527038 CCAAGGACTACTCCAGAGTAACAA 59.473 45.833 8.76 0.00 42.72 2.83
3073 3233 1.377333 GGACGAAGCTTCCCCCAAG 60.377 63.158 20.62 7.97 34.85 3.61
3090 3250 0.749649 CTGAGGAACTGGGAGATCGG 59.250 60.000 0.00 0.00 41.55 4.18
3091 3251 0.103937 GCTGAGGAACTGGGAGATCG 59.896 60.000 0.00 0.00 41.55 3.69
3093 3253 0.908198 GTGCTGAGGAACTGGGAGAT 59.092 55.000 0.00 0.00 41.55 2.75
3097 3257 2.046892 CGGTGCTGAGGAACTGGG 60.047 66.667 0.00 0.00 41.55 4.45
3115 3275 0.795698 CATTGTGTCGACGCCAATCA 59.204 50.000 25.28 4.26 0.00 2.57
3122 3282 3.606777 CAGTAGTAACCATTGTGTCGACG 59.393 47.826 11.62 0.00 0.00 5.12
3127 3287 6.212791 AGGATGTACAGTAGTAACCATTGTGT 59.787 38.462 0.33 0.00 30.67 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.