Multiple sequence alignment - TraesCS6B01G332900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G332900 chr6B 100.000 2784 0 0 2854 5637 584224590 584221807 0.000000e+00 5142.0
1 TraesCS6B01G332900 chr6B 100.000 1882 0 0 695 2576 584226749 584224868 0.000000e+00 3476.0
2 TraesCS6B01G332900 chr6B 82.490 1028 132 27 2866 3865 46649568 46648561 0.000000e+00 857.0
3 TraesCS6B01G332900 chr6B 82.194 1039 134 26 2857 3865 38620532 38621549 0.000000e+00 846.0
4 TraesCS6B01G332900 chr6B 84.248 711 87 9 4085 4789 46626517 46625826 0.000000e+00 669.0
5 TraesCS6B01G332900 chr6B 100.000 303 0 0 1 303 584227443 584227141 1.370000e-155 560.0
6 TraesCS6B01G332900 chr6B 85.806 465 46 17 4851 5312 38623039 38623486 5.110000e-130 475.0
7 TraesCS6B01G332900 chr6B 87.687 268 29 4 1446 1711 46651430 46651165 5.480000e-80 309.0
8 TraesCS6B01G332900 chr6B 80.366 382 40 15 4861 5213 46621844 46621469 2.020000e-64 257.0
9 TraesCS6B01G332900 chr6B 84.332 217 28 5 2195 2410 38620218 38620429 2.060000e-49 207.0
10 TraesCS6B01G332900 chr6D 95.481 1549 53 5 4088 5635 389983985 389985517 0.000000e+00 2457.0
11 TraesCS6B01G332900 chr6D 95.234 1196 56 1 2854 4049 389982788 389983982 0.000000e+00 1892.0
12 TraesCS6B01G332900 chr6D 86.147 1155 57 41 704 1794 389980680 389981795 0.000000e+00 1151.0
13 TraesCS6B01G332900 chr6D 82.291 1039 134 23 2857 3865 23738955 23739973 0.000000e+00 854.0
14 TraesCS6B01G332900 chr6D 82.988 964 112 25 3859 4815 23739998 23740916 0.000000e+00 824.0
15 TraesCS6B01G332900 chr6D 83.944 710 77 23 4858 5561 23746177 23746855 0.000000e+00 645.0
16 TraesCS6B01G332900 chr6D 90.741 378 29 6 2158 2530 389982422 389982798 3.030000e-137 499.0
17 TraesCS6B01G332900 chr6D 91.525 354 22 4 1791 2140 389981941 389982290 1.100000e-131 481.0
18 TraesCS6B01G332900 chr6A 92.407 1159 57 15 2860 4014 536435643 536436774 0.000000e+00 1624.0
19 TraesCS6B01G332900 chr6A 94.672 976 38 6 4060 5027 536436773 536437742 0.000000e+00 1502.0
20 TraesCS6B01G332900 chr6A 88.977 753 62 12 1780 2526 536434910 536435647 0.000000e+00 911.0
21 TraesCS6B01G332900 chr6A 82.529 1036 132 30 2857 3865 22348453 22349466 0.000000e+00 865.0
22 TraesCS6B01G332900 chr6A 83.194 958 121 22 3859 4810 22349491 22350414 0.000000e+00 841.0
23 TraesCS6B01G332900 chr6A 83.602 683 87 17 4870 5545 22274025 22274689 8.020000e-173 617.0
24 TraesCS6B01G332900 chr6A 93.500 400 26 0 5236 5635 536438093 536438492 3.760000e-166 595.0
25 TraesCS6B01G332900 chr6A 82.063 630 84 18 3257 3865 22264718 22265339 1.400000e-140 510.0
26 TraesCS6B01G332900 chr6A 95.031 322 12 4 1426 1747 536434450 536434767 2.340000e-138 503.0
27 TraesCS6B01G332900 chr6A 84.043 470 29 18 900 1348 536433716 536434160 1.460000e-110 411.0
28 TraesCS6B01G332900 chr6A 94.872 234 11 1 5024 5256 536437845 536438078 1.150000e-96 364.0
29 TraesCS6B01G332900 chr6A 85.047 321 33 11 1439 1757 22346709 22347016 4.240000e-81 313.0
30 TraesCS6B01G332900 chr6A 80.447 358 50 14 2059 2410 22348003 22348346 7.250000e-64 255.0
31 TraesCS6B01G332900 chr6A 87.791 172 21 0 2239 2410 22261891 22262062 9.580000e-48 202.0
32 TraesCS6B01G332900 chr6A 93.701 127 4 1 706 832 536433387 536433509 2.680000e-43 187.0
33 TraesCS6B01G332900 chr3B 82.523 658 92 13 3227 3865 745006062 745006715 1.770000e-154 556.0
34 TraesCS6B01G332900 chr1D 87.065 201 25 1 1 201 298312072 298312271 5.680000e-55 226.0
35 TraesCS6B01G332900 chr1D 83.938 193 28 3 10 202 186025146 186024957 1.250000e-41 182.0
36 TraesCS6B01G332900 chr1B 86.364 198 24 3 10 207 401193178 401193372 4.420000e-51 213.0
37 TraesCS6B01G332900 chr7D 82.843 204 32 3 1 203 433286030 433286231 4.490000e-41 180.0
38 TraesCS6B01G332900 chr7A 80.583 206 38 2 1 205 548038941 548039145 2.100000e-34 158.0
39 TraesCS6B01G332900 chr5B 83.448 145 24 0 1 145 599696070 599695926 9.850000e-28 135.0
40 TraesCS6B01G332900 chr3A 79.188 197 31 4 1 196 624063788 624063601 1.650000e-25 128.0
41 TraesCS6B01G332900 chr4A 77.387 199 42 3 1 198 82840487 82840683 1.280000e-21 115.0
42 TraesCS6B01G332900 chr3D 100.000 28 0 0 85 112 121532301 121532328 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G332900 chr6B 584221807 584227443 5636 True 3059.333333 5142 100.000000 1 5637 3 chr6B.!!$R3 5636
1 TraesCS6B01G332900 chr6B 46648561 46651430 2869 True 583.000000 857 85.088500 1446 3865 2 chr6B.!!$R2 2419
2 TraesCS6B01G332900 chr6B 38620218 38623486 3268 False 509.333333 846 84.110667 2195 5312 3 chr6B.!!$F1 3117
3 TraesCS6B01G332900 chr6B 46621469 46626517 5048 True 463.000000 669 82.307000 4085 5213 2 chr6B.!!$R1 1128
4 TraesCS6B01G332900 chr6D 389980680 389985517 4837 False 1296.000000 2457 91.825600 704 5635 5 chr6D.!!$F3 4931
5 TraesCS6B01G332900 chr6D 23738955 23740916 1961 False 839.000000 854 82.639500 2857 4815 2 chr6D.!!$F2 1958
6 TraesCS6B01G332900 chr6D 23746177 23746855 678 False 645.000000 645 83.944000 4858 5561 1 chr6D.!!$F1 703
7 TraesCS6B01G332900 chr6A 536433387 536438492 5105 False 762.125000 1624 92.150375 706 5635 8 chr6A.!!$F4 4929
8 TraesCS6B01G332900 chr6A 22274025 22274689 664 False 617.000000 617 83.602000 4870 5545 1 chr6A.!!$F1 675
9 TraesCS6B01G332900 chr6A 22346709 22350414 3705 False 568.500000 865 82.804250 1439 4810 4 chr6A.!!$F3 3371
10 TraesCS6B01G332900 chr6A 22261891 22265339 3448 False 356.000000 510 84.927000 2239 3865 2 chr6A.!!$F2 1626
11 TraesCS6B01G332900 chr3B 745006062 745006715 653 False 556.000000 556 82.523000 3227 3865 1 chr3B.!!$F1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.032540 CACCAAGCCCAAAAGTGCTC 59.967 55.000 0.00 0.00 36.66 4.26 F
95 96 0.037139 TTGATGCAATGCAGGCAACC 60.037 50.000 18.29 13.61 45.60 3.77 F
209 210 0.108851 CCAAACACGCCCCTTATTGC 60.109 55.000 0.00 0.00 0.00 3.56 F
1369 1570 0.108520 GGCCATCCGTCGTTCTTGTA 60.109 55.000 0.00 0.00 0.00 2.41 F
2204 3577 1.133730 GGTGGGTTACCTGTTGGAACA 60.134 52.381 0.00 0.00 46.51 3.18 F
2401 3852 1.302383 TTCGCCCGCATTTCGATGTT 61.302 50.000 0.00 0.00 41.67 2.71 F
2470 5097 6.142818 AGCTGCTACTTGTAATCTCTAGTG 57.857 41.667 0.00 0.00 0.00 2.74 F
3827 7500 1.072173 TCATCTGGTGGGTGTTGACAG 59.928 52.381 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1551 0.108520 TACAAGAACGACGGATGGCC 60.109 55.000 0.0 0.0 0.00 5.36 R
1369 1570 0.411058 AGCCAGGCAAAGAAAGGGAT 59.589 50.000 15.8 0.0 0.00 3.85 R
1379 1580 0.476338 TGAACTTGGTAGCCAGGCAA 59.524 50.000 15.8 0.0 33.66 4.52 R
2311 3684 1.002624 TTGGGTGATGTTCTCGGCC 60.003 57.895 0.0 0.0 0.00 6.13 R
3392 7045 0.034767 TTGCAGCAGGAATCTCCAGG 60.035 55.000 0.0 0.0 39.61 4.45 R
3778 7451 0.681733 TGGTCTTCCTCACTGCTCAC 59.318 55.000 0.0 0.0 34.23 3.51 R
4024 7730 1.732917 CCAGTTTTTGGCTGTCGCA 59.267 52.632 0.0 0.0 40.87 5.10 R
5302 13153 0.032130 TAGCTTCTTGATAGGGCGCG 59.968 55.000 0.0 0.0 0.00 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.896648 AACAACTATGGTTTGCGTCTG 57.103 42.857 0.00 0.00 32.73 3.51
22 23 1.535462 ACAACTATGGTTTGCGTCTGC 59.465 47.619 0.00 0.00 36.00 4.26
23 24 1.806542 CAACTATGGTTTGCGTCTGCT 59.193 47.619 0.00 0.00 36.28 4.24
24 25 1.726853 ACTATGGTTTGCGTCTGCTC 58.273 50.000 0.00 0.00 43.34 4.26
25 26 1.001974 ACTATGGTTTGCGTCTGCTCA 59.998 47.619 0.00 0.00 43.34 4.26
26 27 1.662629 CTATGGTTTGCGTCTGCTCAG 59.337 52.381 0.00 0.00 43.34 3.35
27 28 0.957395 ATGGTTTGCGTCTGCTCAGG 60.957 55.000 0.00 0.00 43.34 3.86
28 29 2.558313 GTTTGCGTCTGCTCAGGC 59.442 61.111 0.00 0.00 43.34 4.85
29 30 2.669569 TTTGCGTCTGCTCAGGCC 60.670 61.111 0.00 0.00 43.34 5.19
30 31 3.182590 TTTGCGTCTGCTCAGGCCT 62.183 57.895 0.00 0.00 43.34 5.19
31 32 2.680974 TTTGCGTCTGCTCAGGCCTT 62.681 55.000 0.00 0.00 43.34 4.35
32 33 1.826340 TTGCGTCTGCTCAGGCCTTA 61.826 55.000 0.00 0.00 43.34 2.69
33 34 1.079127 GCGTCTGCTCAGGCCTTAA 60.079 57.895 0.00 0.00 38.39 1.85
34 35 0.462759 GCGTCTGCTCAGGCCTTAAT 60.463 55.000 0.00 0.00 38.39 1.40
35 36 1.576356 CGTCTGCTCAGGCCTTAATC 58.424 55.000 0.00 0.00 37.74 1.75
36 37 1.134699 CGTCTGCTCAGGCCTTAATCA 60.135 52.381 0.00 0.00 37.74 2.57
37 38 2.284190 GTCTGCTCAGGCCTTAATCAC 58.716 52.381 0.00 0.00 37.74 3.06
38 39 1.908619 TCTGCTCAGGCCTTAATCACA 59.091 47.619 0.00 0.00 37.74 3.58
39 40 2.507058 TCTGCTCAGGCCTTAATCACAT 59.493 45.455 0.00 0.00 37.74 3.21
40 41 3.711190 TCTGCTCAGGCCTTAATCACATA 59.289 43.478 0.00 0.00 37.74 2.29
41 42 4.349048 TCTGCTCAGGCCTTAATCACATAT 59.651 41.667 0.00 0.00 37.74 1.78
42 43 4.392047 TGCTCAGGCCTTAATCACATATG 58.608 43.478 0.00 0.00 37.74 1.78
43 44 3.190118 GCTCAGGCCTTAATCACATATGC 59.810 47.826 0.00 0.00 0.00 3.14
44 45 3.402110 TCAGGCCTTAATCACATATGCG 58.598 45.455 0.00 0.00 0.00 4.73
45 46 2.485426 CAGGCCTTAATCACATATGCGG 59.515 50.000 0.00 0.00 0.00 5.69
46 47 1.812571 GGCCTTAATCACATATGCGGG 59.187 52.381 1.58 0.00 0.00 6.13
47 48 1.200020 GCCTTAATCACATATGCGGGC 59.800 52.381 1.58 0.00 0.00 6.13
48 49 2.503331 CCTTAATCACATATGCGGGCA 58.497 47.619 1.58 0.00 0.00 5.36
49 50 2.884012 CCTTAATCACATATGCGGGCAA 59.116 45.455 1.58 0.00 0.00 4.52
50 51 3.304659 CCTTAATCACATATGCGGGCAAC 60.305 47.826 1.58 0.00 0.00 4.17
62 63 4.436515 GGCAACCAAACACCAAGC 57.563 55.556 0.00 0.00 0.00 4.01
63 64 1.227527 GGCAACCAAACACCAAGCC 60.228 57.895 0.00 0.00 0.00 4.35
64 65 1.227527 GCAACCAAACACCAAGCCC 60.228 57.895 0.00 0.00 0.00 5.19
65 66 1.965754 GCAACCAAACACCAAGCCCA 61.966 55.000 0.00 0.00 0.00 5.36
66 67 0.539051 CAACCAAACACCAAGCCCAA 59.461 50.000 0.00 0.00 0.00 4.12
67 68 1.065854 CAACCAAACACCAAGCCCAAA 60.066 47.619 0.00 0.00 0.00 3.28
68 69 1.280457 ACCAAACACCAAGCCCAAAA 58.720 45.000 0.00 0.00 0.00 2.44
69 70 1.209261 ACCAAACACCAAGCCCAAAAG 59.791 47.619 0.00 0.00 0.00 2.27
70 71 1.209261 CCAAACACCAAGCCCAAAAGT 59.791 47.619 0.00 0.00 0.00 2.66
71 72 2.278854 CAAACACCAAGCCCAAAAGTG 58.721 47.619 0.00 0.00 34.61 3.16
72 73 0.177836 AACACCAAGCCCAAAAGTGC 59.822 50.000 0.00 0.00 31.58 4.40
73 74 0.687427 ACACCAAGCCCAAAAGTGCT 60.687 50.000 0.00 0.00 40.17 4.40
74 75 0.032540 CACCAAGCCCAAAAGTGCTC 59.967 55.000 0.00 0.00 36.66 4.26
75 76 0.396974 ACCAAGCCCAAAAGTGCTCA 60.397 50.000 0.00 0.00 36.66 4.26
76 77 0.971386 CCAAGCCCAAAAGTGCTCAT 59.029 50.000 0.00 0.00 36.66 2.90
77 78 1.345415 CCAAGCCCAAAAGTGCTCATT 59.655 47.619 0.00 0.00 36.66 2.57
78 79 2.409975 CAAGCCCAAAAGTGCTCATTG 58.590 47.619 0.00 0.00 36.66 2.82
79 80 1.999648 AGCCCAAAAGTGCTCATTGA 58.000 45.000 6.05 0.00 30.33 2.57
80 81 2.532843 AGCCCAAAAGTGCTCATTGAT 58.467 42.857 6.05 0.00 30.33 2.57
81 82 2.232941 AGCCCAAAAGTGCTCATTGATG 59.767 45.455 6.05 0.00 30.33 3.07
82 83 2.613691 CCCAAAAGTGCTCATTGATGC 58.386 47.619 6.05 0.00 0.00 3.91
83 84 2.028839 CCCAAAAGTGCTCATTGATGCA 60.029 45.455 0.00 0.00 36.79 3.96
84 85 3.555377 CCCAAAAGTGCTCATTGATGCAA 60.555 43.478 10.89 0.00 41.10 4.08
85 86 4.250464 CCAAAAGTGCTCATTGATGCAAT 58.750 39.130 10.89 8.23 41.10 3.56
92 93 3.750828 CATTGATGCAATGCAGGCA 57.249 47.368 14.98 16.95 43.38 4.75
93 94 2.017138 CATTGATGCAATGCAGGCAA 57.983 45.000 22.24 22.24 43.38 4.52
94 95 1.663643 CATTGATGCAATGCAGGCAAC 59.336 47.619 22.38 16.04 43.38 4.17
95 96 0.037139 TTGATGCAATGCAGGCAACC 60.037 50.000 18.29 13.61 45.60 3.77
96 97 1.186267 TGATGCAATGCAGGCAACCA 61.186 50.000 18.29 15.61 45.60 3.67
97 98 0.037139 GATGCAATGCAGGCAACCAA 60.037 50.000 18.29 0.00 45.60 3.67
98 99 0.397187 ATGCAATGCAGGCAACCAAA 59.603 45.000 18.29 0.00 45.60 3.28
99 100 0.532417 TGCAATGCAGGCAACCAAAC 60.532 50.000 12.89 0.00 38.54 2.93
100 101 0.532417 GCAATGCAGGCAACCAAACA 60.532 50.000 0.00 0.00 37.17 2.83
101 102 1.950828 CAATGCAGGCAACCAAACAA 58.049 45.000 0.00 0.00 37.17 2.83
102 103 1.598601 CAATGCAGGCAACCAAACAAC 59.401 47.619 0.00 0.00 37.17 3.32
103 104 0.829333 ATGCAGGCAACCAAACAACA 59.171 45.000 0.00 0.00 37.17 3.33
104 105 0.829333 TGCAGGCAACCAAACAACAT 59.171 45.000 0.00 0.00 37.17 2.71
105 106 2.034878 TGCAGGCAACCAAACAACATA 58.965 42.857 0.00 0.00 37.17 2.29
106 107 2.632028 TGCAGGCAACCAAACAACATAT 59.368 40.909 0.00 0.00 37.17 1.78
107 108 3.829026 TGCAGGCAACCAAACAACATATA 59.171 39.130 0.00 0.00 37.17 0.86
108 109 4.465660 TGCAGGCAACCAAACAACATATAT 59.534 37.500 0.00 0.00 37.17 0.86
109 110 5.654209 TGCAGGCAACCAAACAACATATATA 59.346 36.000 0.00 0.00 37.17 0.86
110 111 6.323482 TGCAGGCAACCAAACAACATATATAT 59.677 34.615 0.00 0.00 37.17 0.86
111 112 6.642131 GCAGGCAACCAAACAACATATATATG 59.358 38.462 19.21 19.21 37.16 1.78
112 113 7.684187 GCAGGCAACCAAACAACATATATATGT 60.684 37.037 20.49 20.49 43.42 2.29
127 128 8.748412 ACATATATATGTTGGTTTGTTGCTTGT 58.252 29.630 20.49 0.00 43.99 3.16
128 129 9.585099 CATATATATGTTGGTTTGTTGCTTGTT 57.415 29.630 13.69 0.00 0.00 2.83
130 131 8.900983 ATATATGTTGGTTTGTTGCTTGTTTT 57.099 26.923 0.00 0.00 0.00 2.43
131 132 5.956068 ATGTTGGTTTGTTGCTTGTTTTT 57.044 30.435 0.00 0.00 0.00 1.94
132 133 5.100751 TGTTGGTTTGTTGCTTGTTTTTG 57.899 34.783 0.00 0.00 0.00 2.44
133 134 4.576463 TGTTGGTTTGTTGCTTGTTTTTGT 59.424 33.333 0.00 0.00 0.00 2.83
134 135 5.066505 TGTTGGTTTGTTGCTTGTTTTTGTT 59.933 32.000 0.00 0.00 0.00 2.83
135 136 5.349824 TGGTTTGTTGCTTGTTTTTGTTC 57.650 34.783 0.00 0.00 0.00 3.18
136 137 4.816385 TGGTTTGTTGCTTGTTTTTGTTCA 59.184 33.333 0.00 0.00 0.00 3.18
137 138 5.296780 TGGTTTGTTGCTTGTTTTTGTTCAA 59.703 32.000 0.00 0.00 0.00 2.69
138 139 6.016777 TGGTTTGTTGCTTGTTTTTGTTCAAT 60.017 30.769 0.00 0.00 0.00 2.57
139 140 6.860539 GGTTTGTTGCTTGTTTTTGTTCAATT 59.139 30.769 0.00 0.00 0.00 2.32
140 141 8.017946 GGTTTGTTGCTTGTTTTTGTTCAATTA 58.982 29.630 0.00 0.00 0.00 1.40
141 142 9.049974 GTTTGTTGCTTGTTTTTGTTCAATTAG 57.950 29.630 0.00 0.00 0.00 1.73
142 143 7.301068 TGTTGCTTGTTTTTGTTCAATTAGG 57.699 32.000 0.00 0.00 0.00 2.69
143 144 5.982465 TGCTTGTTTTTGTTCAATTAGGC 57.018 34.783 0.00 0.00 0.00 3.93
144 145 5.669477 TGCTTGTTTTTGTTCAATTAGGCT 58.331 33.333 0.00 0.00 0.00 4.58
145 146 5.523188 TGCTTGTTTTTGTTCAATTAGGCTG 59.477 36.000 0.00 0.00 0.00 4.85
146 147 5.050159 GCTTGTTTTTGTTCAATTAGGCTGG 60.050 40.000 0.00 0.00 0.00 4.85
147 148 4.954875 TGTTTTTGTTCAATTAGGCTGGG 58.045 39.130 0.00 0.00 0.00 4.45
148 149 4.407296 TGTTTTTGTTCAATTAGGCTGGGT 59.593 37.500 0.00 0.00 0.00 4.51
149 150 5.104735 TGTTTTTGTTCAATTAGGCTGGGTT 60.105 36.000 0.00 0.00 0.00 4.11
150 151 6.098409 TGTTTTTGTTCAATTAGGCTGGGTTA 59.902 34.615 0.00 0.00 0.00 2.85
151 152 6.732896 TTTTGTTCAATTAGGCTGGGTTAA 57.267 33.333 0.00 0.00 0.00 2.01
152 153 5.975693 TTGTTCAATTAGGCTGGGTTAAG 57.024 39.130 0.00 0.00 0.00 1.85
153 154 5.249780 TGTTCAATTAGGCTGGGTTAAGA 57.750 39.130 0.00 0.00 0.00 2.10
154 155 5.826643 TGTTCAATTAGGCTGGGTTAAGAT 58.173 37.500 0.00 0.00 0.00 2.40
155 156 5.652014 TGTTCAATTAGGCTGGGTTAAGATG 59.348 40.000 0.00 0.00 0.00 2.90
156 157 4.792068 TCAATTAGGCTGGGTTAAGATGG 58.208 43.478 0.00 0.00 0.00 3.51
157 158 3.884037 ATTAGGCTGGGTTAAGATGGG 57.116 47.619 0.00 0.00 0.00 4.00
158 159 1.518367 TAGGCTGGGTTAAGATGGGG 58.482 55.000 0.00 0.00 0.00 4.96
159 160 0.253630 AGGCTGGGTTAAGATGGGGA 60.254 55.000 0.00 0.00 0.00 4.81
160 161 0.853530 GGCTGGGTTAAGATGGGGAT 59.146 55.000 0.00 0.00 0.00 3.85
161 162 1.479389 GGCTGGGTTAAGATGGGGATG 60.479 57.143 0.00 0.00 0.00 3.51
162 163 1.494721 GCTGGGTTAAGATGGGGATGA 59.505 52.381 0.00 0.00 0.00 2.92
163 164 2.091885 GCTGGGTTAAGATGGGGATGAA 60.092 50.000 0.00 0.00 0.00 2.57
164 165 3.627237 GCTGGGTTAAGATGGGGATGAAA 60.627 47.826 0.00 0.00 0.00 2.69
165 166 4.808042 CTGGGTTAAGATGGGGATGAAAT 58.192 43.478 0.00 0.00 0.00 2.17
166 167 4.545678 TGGGTTAAGATGGGGATGAAATG 58.454 43.478 0.00 0.00 0.00 2.32
167 168 3.321968 GGGTTAAGATGGGGATGAAATGC 59.678 47.826 0.00 0.00 0.00 3.56
168 169 3.960102 GGTTAAGATGGGGATGAAATGCA 59.040 43.478 0.00 0.00 35.75 3.96
169 170 4.038402 GGTTAAGATGGGGATGAAATGCAG 59.962 45.833 0.00 0.00 35.75 4.41
170 171 2.376695 AGATGGGGATGAAATGCAGG 57.623 50.000 0.00 0.00 35.75 4.85
171 172 1.572415 AGATGGGGATGAAATGCAGGT 59.428 47.619 0.00 0.00 35.75 4.00
172 173 1.684983 GATGGGGATGAAATGCAGGTG 59.315 52.381 0.00 0.00 35.75 4.00
173 174 0.971959 TGGGGATGAAATGCAGGTGC 60.972 55.000 0.00 0.00 35.75 5.01
174 175 1.679559 GGGGATGAAATGCAGGTGCC 61.680 60.000 0.00 0.00 41.18 5.01
175 176 1.434696 GGATGAAATGCAGGTGCCG 59.565 57.895 0.00 0.00 41.18 5.69
176 177 1.315257 GGATGAAATGCAGGTGCCGT 61.315 55.000 0.00 0.00 41.18 5.68
177 178 0.527565 GATGAAATGCAGGTGCCGTT 59.472 50.000 0.00 0.00 41.18 4.44
178 179 0.244450 ATGAAATGCAGGTGCCGTTG 59.756 50.000 0.00 0.00 41.18 4.10
179 180 1.734117 GAAATGCAGGTGCCGTTGC 60.734 57.895 0.00 0.00 41.18 4.17
180 181 2.146073 GAAATGCAGGTGCCGTTGCT 62.146 55.000 0.00 0.00 40.87 3.91
181 182 2.424705 AAATGCAGGTGCCGTTGCTG 62.425 55.000 0.00 0.00 40.87 4.41
184 185 3.594775 CAGGTGCCGTTGCTGCAA 61.595 61.111 11.69 11.69 41.06 4.08
185 186 3.289834 AGGTGCCGTTGCTGCAAG 61.290 61.111 16.53 6.28 41.06 4.01
186 187 4.347453 GGTGCCGTTGCTGCAAGG 62.347 66.667 23.93 23.93 41.06 3.61
193 194 3.626394 TTGCTGCAAGGCAACCAA 58.374 50.000 11.69 0.00 45.64 3.67
194 195 1.903294 TTGCTGCAAGGCAACCAAA 59.097 47.368 11.69 0.00 45.64 3.28
195 196 0.461693 TTGCTGCAAGGCAACCAAAC 60.462 50.000 11.69 0.00 45.64 2.93
196 197 1.143620 GCTGCAAGGCAACCAAACA 59.856 52.632 0.00 0.00 38.41 2.83
197 198 1.153597 GCTGCAAGGCAACCAAACAC 61.154 55.000 0.00 0.00 38.41 3.32
198 199 0.871163 CTGCAAGGCAACCAAACACG 60.871 55.000 0.00 0.00 38.41 4.49
199 200 2.237066 GCAAGGCAACCAAACACGC 61.237 57.895 0.00 0.00 37.17 5.34
200 201 1.591327 CAAGGCAACCAAACACGCC 60.591 57.895 0.00 0.00 45.23 5.68
201 202 2.791868 AAGGCAACCAAACACGCCC 61.792 57.895 0.00 0.00 46.08 6.13
202 203 4.293648 GGCAACCAAACACGCCCC 62.294 66.667 0.00 0.00 38.67 5.80
203 204 3.223589 GCAACCAAACACGCCCCT 61.224 61.111 0.00 0.00 0.00 4.79
204 205 2.791868 GCAACCAAACACGCCCCTT 61.792 57.895 0.00 0.00 0.00 3.95
205 206 1.457009 GCAACCAAACACGCCCCTTA 61.457 55.000 0.00 0.00 0.00 2.69
206 207 1.253100 CAACCAAACACGCCCCTTAT 58.747 50.000 0.00 0.00 0.00 1.73
207 208 1.616374 CAACCAAACACGCCCCTTATT 59.384 47.619 0.00 0.00 0.00 1.40
208 209 1.253100 ACCAAACACGCCCCTTATTG 58.747 50.000 0.00 0.00 0.00 1.90
209 210 0.108851 CCAAACACGCCCCTTATTGC 60.109 55.000 0.00 0.00 0.00 3.56
214 215 4.524869 CGCCCCTTATTGCGTGTA 57.475 55.556 0.00 0.00 45.43 2.90
215 216 2.770134 CGCCCCTTATTGCGTGTAA 58.230 52.632 0.00 0.00 45.43 2.41
216 217 1.305201 CGCCCCTTATTGCGTGTAAT 58.695 50.000 0.00 0.00 45.43 1.89
217 218 1.263217 CGCCCCTTATTGCGTGTAATC 59.737 52.381 0.00 0.00 45.43 1.75
218 219 2.572290 GCCCCTTATTGCGTGTAATCT 58.428 47.619 0.00 0.00 0.00 2.40
219 220 2.548480 GCCCCTTATTGCGTGTAATCTC 59.452 50.000 0.00 0.00 0.00 2.75
220 221 3.804036 CCCCTTATTGCGTGTAATCTCA 58.196 45.455 0.00 0.00 0.00 3.27
221 222 3.560068 CCCCTTATTGCGTGTAATCTCAC 59.440 47.826 0.00 0.00 35.28 3.51
222 223 4.442706 CCCTTATTGCGTGTAATCTCACT 58.557 43.478 0.00 0.00 36.33 3.41
223 224 4.271049 CCCTTATTGCGTGTAATCTCACTG 59.729 45.833 0.00 0.00 36.33 3.66
224 225 5.109210 CCTTATTGCGTGTAATCTCACTGA 58.891 41.667 0.00 0.00 36.33 3.41
225 226 5.755375 CCTTATTGCGTGTAATCTCACTGAT 59.245 40.000 0.00 0.00 36.33 2.90
226 227 6.292542 CCTTATTGCGTGTAATCTCACTGATG 60.293 42.308 0.00 0.00 35.21 3.07
227 228 2.270923 TGCGTGTAATCTCACTGATGC 58.729 47.619 0.00 0.00 35.21 3.91
228 229 2.270923 GCGTGTAATCTCACTGATGCA 58.729 47.619 0.00 0.00 35.21 3.96
229 230 2.672874 GCGTGTAATCTCACTGATGCAA 59.327 45.455 0.00 0.00 35.21 4.08
230 231 3.242220 GCGTGTAATCTCACTGATGCAAG 60.242 47.826 0.00 0.00 35.21 4.01
231 232 3.308053 CGTGTAATCTCACTGATGCAAGG 59.692 47.826 0.00 0.00 35.21 3.61
232 233 3.064545 GTGTAATCTCACTGATGCAAGGC 59.935 47.826 0.00 0.00 35.21 4.35
233 234 2.803030 AATCTCACTGATGCAAGGCT 57.197 45.000 0.00 0.00 35.21 4.58
234 235 3.920231 AATCTCACTGATGCAAGGCTA 57.080 42.857 0.00 0.00 35.21 3.93
235 236 4.434545 AATCTCACTGATGCAAGGCTAT 57.565 40.909 0.00 0.00 35.21 2.97
236 237 3.189618 TCTCACTGATGCAAGGCTATG 57.810 47.619 0.00 0.00 0.00 2.23
237 238 2.158856 TCTCACTGATGCAAGGCTATGG 60.159 50.000 0.00 0.00 0.00 2.74
238 239 0.666913 CACTGATGCAAGGCTATGGC 59.333 55.000 0.00 0.00 37.82 4.40
239 240 0.549950 ACTGATGCAAGGCTATGGCT 59.450 50.000 0.00 0.00 41.24 4.75
240 241 0.952280 CTGATGCAAGGCTATGGCTG 59.048 55.000 0.00 0.00 38.81 4.85
241 242 0.547553 TGATGCAAGGCTATGGCTGA 59.452 50.000 0.00 0.00 38.81 4.26
242 243 1.144298 TGATGCAAGGCTATGGCTGAT 59.856 47.619 0.00 0.00 38.81 2.90
243 244 2.372837 TGATGCAAGGCTATGGCTGATA 59.627 45.455 0.00 0.00 38.81 2.15
244 245 2.556144 TGCAAGGCTATGGCTGATAG 57.444 50.000 0.00 0.00 38.81 2.08
245 246 2.049372 TGCAAGGCTATGGCTGATAGA 58.951 47.619 0.00 0.00 38.81 1.98
246 247 2.224378 TGCAAGGCTATGGCTGATAGAC 60.224 50.000 0.00 4.69 42.56 2.59
247 248 2.873649 GCAAGGCTATGGCTGATAGACC 60.874 54.545 0.00 6.93 43.20 3.85
248 249 2.369860 CAAGGCTATGGCTGATAGACCA 59.630 50.000 0.00 0.00 43.20 4.02
249 250 2.255406 AGGCTATGGCTGATAGACCAG 58.745 52.381 0.00 0.00 43.20 4.00
250 251 2.158249 AGGCTATGGCTGATAGACCAGA 60.158 50.000 0.00 0.00 43.20 3.86
251 252 2.836981 GGCTATGGCTGATAGACCAGAT 59.163 50.000 0.00 0.00 36.73 2.90
252 253 4.026744 GGCTATGGCTGATAGACCAGATA 58.973 47.826 0.00 0.00 36.73 1.98
253 254 4.653341 GGCTATGGCTGATAGACCAGATAT 59.347 45.833 0.00 0.00 36.73 1.63
254 255 5.130145 GGCTATGGCTGATAGACCAGATATT 59.870 44.000 0.00 0.00 36.73 1.28
255 256 6.325028 GGCTATGGCTGATAGACCAGATATTA 59.675 42.308 0.00 0.00 36.73 0.98
256 257 7.016072 GGCTATGGCTGATAGACCAGATATTAT 59.984 40.741 0.00 0.00 36.73 1.28
257 258 8.087750 GCTATGGCTGATAGACCAGATATTATC 58.912 40.741 0.00 0.00 39.88 1.75
258 259 6.798427 TGGCTGATAGACCAGATATTATCC 57.202 41.667 0.00 0.00 36.29 2.59
259 260 5.360999 TGGCTGATAGACCAGATATTATCCG 59.639 44.000 0.00 0.00 36.29 4.18
260 261 5.361285 GGCTGATAGACCAGATATTATCCGT 59.639 44.000 0.00 0.00 36.29 4.69
261 262 6.546403 GGCTGATAGACCAGATATTATCCGTA 59.454 42.308 0.00 0.00 36.29 4.02
262 263 7.231722 GGCTGATAGACCAGATATTATCCGTAT 59.768 40.741 0.00 0.00 36.29 3.06
263 264 8.293867 GCTGATAGACCAGATATTATCCGTATC 58.706 40.741 0.00 2.27 36.29 2.24
264 265 8.693120 TGATAGACCAGATATTATCCGTATCC 57.307 38.462 0.00 0.00 30.53 2.59
265 266 7.724506 TGATAGACCAGATATTATCCGTATCCC 59.275 40.741 0.00 0.00 30.53 3.85
266 267 6.093617 AGACCAGATATTATCCGTATCCCT 57.906 41.667 0.00 0.00 30.53 4.20
267 268 6.503944 AGACCAGATATTATCCGTATCCCTT 58.496 40.000 0.00 0.00 30.53 3.95
268 269 6.608002 AGACCAGATATTATCCGTATCCCTTC 59.392 42.308 0.00 0.00 30.53 3.46
269 270 5.661759 ACCAGATATTATCCGTATCCCTTCC 59.338 44.000 0.00 0.00 30.53 3.46
270 271 5.070580 CCAGATATTATCCGTATCCCTTCCC 59.929 48.000 0.00 0.00 30.53 3.97
271 272 5.900123 CAGATATTATCCGTATCCCTTCCCT 59.100 44.000 0.00 0.00 30.53 4.20
272 273 6.041069 CAGATATTATCCGTATCCCTTCCCTC 59.959 46.154 0.00 0.00 30.53 4.30
273 274 2.617840 TATCCGTATCCCTTCCCTCC 57.382 55.000 0.00 0.00 0.00 4.30
274 275 0.178900 ATCCGTATCCCTTCCCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
275 276 1.074775 CCGTATCCCTTCCCTCCCA 60.075 63.158 0.00 0.00 0.00 4.37
276 277 0.693092 CCGTATCCCTTCCCTCCCAA 60.693 60.000 0.00 0.00 0.00 4.12
277 278 0.468648 CGTATCCCTTCCCTCCCAAC 59.531 60.000 0.00 0.00 0.00 3.77
278 279 1.591768 GTATCCCTTCCCTCCCAACA 58.408 55.000 0.00 0.00 0.00 3.33
279 280 2.136026 GTATCCCTTCCCTCCCAACAT 58.864 52.381 0.00 0.00 0.00 2.71
280 281 1.698874 ATCCCTTCCCTCCCAACATT 58.301 50.000 0.00 0.00 0.00 2.71
281 282 1.466858 TCCCTTCCCTCCCAACATTT 58.533 50.000 0.00 0.00 0.00 2.32
282 283 1.792651 TCCCTTCCCTCCCAACATTTT 59.207 47.619 0.00 0.00 0.00 1.82
283 284 1.901833 CCCTTCCCTCCCAACATTTTG 59.098 52.381 0.00 0.00 0.00 2.44
295 296 5.159399 CCAACATTTTGGCTTGAACAAAG 57.841 39.130 0.00 0.00 46.09 2.77
296 297 4.635324 CCAACATTTTGGCTTGAACAAAGT 59.365 37.500 0.00 0.00 46.09 2.66
297 298 5.447548 CCAACATTTTGGCTTGAACAAAGTG 60.448 40.000 10.50 10.50 46.09 3.16
298 299 4.190772 ACATTTTGGCTTGAACAAAGTGG 58.809 39.130 14.75 2.72 44.67 4.00
299 300 3.971245 TTTTGGCTTGAACAAAGTGGT 57.029 38.095 0.00 0.00 38.84 4.16
300 301 3.518634 TTTGGCTTGAACAAAGTGGTC 57.481 42.857 0.00 0.00 38.25 4.02
301 302 2.435372 TGGCTTGAACAAAGTGGTCT 57.565 45.000 0.00 0.00 34.53 3.85
302 303 3.569194 TGGCTTGAACAAAGTGGTCTA 57.431 42.857 0.00 0.00 34.53 2.59
773 776 2.091102 AACGGTACACACCCAGGACG 62.091 60.000 0.00 0.00 42.43 4.79
774 777 2.660802 GGTACACACCCAGGACGG 59.339 66.667 0.00 0.00 39.11 4.79
775 778 1.909781 GGTACACACCCAGGACGGA 60.910 63.158 0.00 0.00 39.11 4.69
776 779 1.291272 GTACACACCCAGGACGGAC 59.709 63.158 0.00 0.00 36.56 4.79
943 1113 2.264794 CCCGCCCGCCTACATATC 59.735 66.667 0.00 0.00 0.00 1.63
951 1121 0.852777 CGCCTACATATCACGCACAC 59.147 55.000 0.00 0.00 0.00 3.82
958 1128 0.389817 ATATCACGCACACGCACAGT 60.390 50.000 0.00 0.00 45.53 3.55
965 1135 2.016961 CACACGCACAGTTGAGCTT 58.983 52.632 0.00 0.00 0.00 3.74
993 1174 1.746171 CGTACCTCATCTCCGTCTCCA 60.746 57.143 0.00 0.00 0.00 3.86
1033 1214 1.791103 CTCTCCTCGTCGCATCCTCC 61.791 65.000 0.00 0.00 0.00 4.30
1085 1266 1.759459 CTTATCTGGTCCGGCCTCCC 61.759 65.000 14.76 0.00 38.35 4.30
1086 1267 2.252012 TTATCTGGTCCGGCCTCCCT 62.252 60.000 14.76 2.16 38.35 4.20
1087 1268 2.658321 TATCTGGTCCGGCCTCCCTC 62.658 65.000 14.76 0.00 38.35 4.30
1130 1311 0.248743 CAATGCCGCAGCTAACCATG 60.249 55.000 0.00 0.00 40.80 3.66
1133 1314 0.180171 TGCCGCAGCTAACCATGTAT 59.820 50.000 0.00 0.00 40.80 2.29
1134 1315 0.868406 GCCGCAGCTAACCATGTATC 59.132 55.000 0.00 0.00 35.50 2.24
1158 1342 7.957002 TCTATCTATCCATCTCAAACACCTTC 58.043 38.462 0.00 0.00 0.00 3.46
1173 1357 2.089980 ACCTTCTTCTCATGCATGCAC 58.910 47.619 25.37 0.00 0.00 4.57
1348 1549 1.067425 CACGGATACCAGGTTCGTTGA 60.067 52.381 0.00 0.00 31.35 3.18
1349 1550 1.829222 ACGGATACCAGGTTCGTTGAT 59.171 47.619 0.00 0.00 0.00 2.57
1350 1551 2.201732 CGGATACCAGGTTCGTTGATG 58.798 52.381 0.00 0.00 0.00 3.07
1351 1552 2.561569 GGATACCAGGTTCGTTGATGG 58.438 52.381 0.00 0.00 38.83 3.51
1352 1553 1.940613 GATACCAGGTTCGTTGATGGC 59.059 52.381 0.00 0.00 36.21 4.40
1354 1555 1.303236 CCAGGTTCGTTGATGGCCA 60.303 57.895 8.56 8.56 0.00 5.36
1356 1557 0.734889 CAGGTTCGTTGATGGCCATC 59.265 55.000 34.71 34.71 38.29 3.51
1357 1558 0.394352 AGGTTCGTTGATGGCCATCC 60.394 55.000 36.97 23.94 37.02 3.51
1358 1559 1.714899 GGTTCGTTGATGGCCATCCG 61.715 60.000 36.97 32.32 37.02 4.18
1359 1560 1.024579 GTTCGTTGATGGCCATCCGT 61.025 55.000 36.97 10.14 37.02 4.69
1360 1561 0.742990 TTCGTTGATGGCCATCCGTC 60.743 55.000 36.97 25.78 46.42 4.79
1364 1565 3.719214 GATGGCCATCCGTCGTTC 58.281 61.111 32.15 8.78 38.52 3.95
1365 1566 1.144057 GATGGCCATCCGTCGTTCT 59.856 57.895 32.15 0.23 38.52 3.01
1366 1567 0.462047 GATGGCCATCCGTCGTTCTT 60.462 55.000 32.15 0.00 38.52 2.52
1367 1568 0.744414 ATGGCCATCCGTCGTTCTTG 60.744 55.000 14.09 0.00 34.14 3.02
1368 1569 1.375523 GGCCATCCGTCGTTCTTGT 60.376 57.895 0.00 0.00 0.00 3.16
1369 1570 0.108520 GGCCATCCGTCGTTCTTGTA 60.109 55.000 0.00 0.00 0.00 2.41
1370 1571 1.472728 GGCCATCCGTCGTTCTTGTAT 60.473 52.381 0.00 0.00 0.00 2.29
1371 1572 1.859080 GCCATCCGTCGTTCTTGTATC 59.141 52.381 0.00 0.00 0.00 2.24
1372 1573 2.470821 CCATCCGTCGTTCTTGTATCC 58.529 52.381 0.00 0.00 0.00 2.59
1373 1574 2.470821 CATCCGTCGTTCTTGTATCCC 58.529 52.381 0.00 0.00 0.00 3.85
1374 1575 1.843368 TCCGTCGTTCTTGTATCCCT 58.157 50.000 0.00 0.00 0.00 4.20
1375 1576 2.173519 TCCGTCGTTCTTGTATCCCTT 58.826 47.619 0.00 0.00 0.00 3.95
1376 1577 2.564062 TCCGTCGTTCTTGTATCCCTTT 59.436 45.455 0.00 0.00 0.00 3.11
1377 1578 2.928116 CCGTCGTTCTTGTATCCCTTTC 59.072 50.000 0.00 0.00 0.00 2.62
1378 1579 3.368116 CCGTCGTTCTTGTATCCCTTTCT 60.368 47.826 0.00 0.00 0.00 2.52
1379 1580 4.243270 CGTCGTTCTTGTATCCCTTTCTT 58.757 43.478 0.00 0.00 0.00 2.52
1380 1581 4.689345 CGTCGTTCTTGTATCCCTTTCTTT 59.311 41.667 0.00 0.00 0.00 2.52
1381 1582 5.389516 CGTCGTTCTTGTATCCCTTTCTTTG 60.390 44.000 0.00 0.00 0.00 2.77
1382 1583 4.454504 TCGTTCTTGTATCCCTTTCTTTGC 59.545 41.667 0.00 0.00 0.00 3.68
1387 1588 1.751351 GTATCCCTTTCTTTGCCTGGC 59.249 52.381 12.87 12.87 0.00 4.85
1409 1610 4.035675 GCTACCAAGTTCATAGTTCATGGC 59.964 45.833 0.00 0.00 35.16 4.40
1432 1870 2.762887 TGGATCACGCATTTCTCTCTCT 59.237 45.455 0.00 0.00 0.00 3.10
1433 1871 3.122297 GGATCACGCATTTCTCTCTCTG 58.878 50.000 0.00 0.00 0.00 3.35
1434 1872 2.001812 TCACGCATTTCTCTCTCTGC 57.998 50.000 0.00 0.00 0.00 4.26
1435 1873 1.273327 TCACGCATTTCTCTCTCTGCA 59.727 47.619 0.00 0.00 34.29 4.41
1733 2174 2.011222 ACTCACTCTCCGTCGATCTTC 58.989 52.381 0.00 0.00 0.00 2.87
1803 2998 3.503748 CGTTTCATCTTCAGGGAAAAGCT 59.496 43.478 0.00 0.00 32.85 3.74
1809 3004 3.399330 TCTTCAGGGAAAAGCTTACGTG 58.601 45.455 0.00 5.77 33.31 4.49
1860 3055 4.394712 GGCCTCACCCACAGGACG 62.395 72.222 0.00 0.00 36.73 4.79
1878 3073 2.125713 TGCGCGTGGATGTCGAAT 60.126 55.556 8.43 0.00 0.00 3.34
1893 3088 2.033407 GTCGAATGGATTCATGAGCGTG 60.033 50.000 0.00 0.00 36.61 5.34
2141 3393 2.382882 TCATGGCAGTCTCAGAGGTAG 58.617 52.381 0.00 0.00 0.00 3.18
2146 3398 2.092321 GGCAGTCTCAGAGGTAGGAGTA 60.092 54.545 0.00 0.00 32.93 2.59
2147 3399 3.435890 GGCAGTCTCAGAGGTAGGAGTAT 60.436 52.174 0.00 0.00 32.93 2.12
2148 3400 3.568007 GCAGTCTCAGAGGTAGGAGTATG 59.432 52.174 0.00 0.00 32.93 2.39
2149 3401 3.568007 CAGTCTCAGAGGTAGGAGTATGC 59.432 52.174 0.00 0.00 32.93 3.14
2150 3402 3.203263 AGTCTCAGAGGTAGGAGTATGCA 59.797 47.826 0.00 0.00 32.93 3.96
2151 3403 4.141041 AGTCTCAGAGGTAGGAGTATGCAT 60.141 45.833 3.79 3.79 32.93 3.96
2152 3404 4.022416 GTCTCAGAGGTAGGAGTATGCATG 60.022 50.000 10.16 0.00 32.93 4.06
2153 3405 2.630098 TCAGAGGTAGGAGTATGCATGC 59.370 50.000 11.82 11.82 0.00 4.06
2168 3533 2.787601 CATGCAATGTAGCCATCCAC 57.212 50.000 0.00 0.00 40.20 4.02
2181 3546 1.140452 CCATCCACTCTGGGATCACAG 59.860 57.143 19.51 19.51 45.91 3.66
2204 3577 1.133730 GGTGGGTTACCTGTTGGAACA 60.134 52.381 0.00 0.00 46.51 3.18
2231 3604 1.870402 TGCGAATGAACACATCGTTGT 59.130 42.857 11.41 0.00 38.19 3.32
2311 3684 2.372690 CGAAGTCACTCCGGCGTTG 61.373 63.158 6.01 0.00 0.00 4.10
2338 3711 2.270352 ACATCACCCAACACGTTGAT 57.730 45.000 11.46 0.00 42.93 2.57
2401 3852 1.302383 TTCGCCCGCATTTCGATGTT 61.302 50.000 0.00 0.00 41.67 2.71
2470 5097 6.142818 AGCTGCTACTTGTAATCTCTAGTG 57.857 41.667 0.00 0.00 0.00 2.74
2486 5113 7.953158 TCTCTAGTGAAAATCAGTCAGTTTG 57.047 36.000 0.00 0.00 31.49 2.93
3077 5723 7.011389 TGGAAAACGCTTGATATTACTCTCATG 59.989 37.037 0.00 0.00 0.00 3.07
3376 7029 7.784633 AAAAACAACATGGAGGTAAACAATG 57.215 32.000 0.00 0.00 0.00 2.82
3379 7032 7.775053 AACAACATGGAGGTAAACAATGTAT 57.225 32.000 0.00 0.00 0.00 2.29
3480 7134 6.774673 TGGTTATATTCACAGTGAAAGGACA 58.225 36.000 19.92 11.28 40.12 4.02
3778 7451 1.473434 GCTTCAGGGATGGAGTTACCG 60.473 57.143 0.00 0.00 42.61 4.02
3820 7493 1.806542 CGAAGTTTCATCTGGTGGGTG 59.193 52.381 0.00 0.00 0.00 4.61
3827 7500 1.072173 TCATCTGGTGGGTGTTGACAG 59.928 52.381 0.00 0.00 0.00 3.51
4004 7710 7.846644 TTTTTGTCATGAAGTTGCTTTGATT 57.153 28.000 0.00 0.00 0.00 2.57
4005 7711 7.467557 TTTTGTCATGAAGTTGCTTTGATTC 57.532 32.000 0.00 0.00 0.00 2.52
4006 7712 4.786507 TGTCATGAAGTTGCTTTGATTCG 58.213 39.130 0.00 0.00 0.00 3.34
4007 7713 3.605486 GTCATGAAGTTGCTTTGATTCGC 59.395 43.478 0.00 0.00 0.00 4.70
4008 7714 2.704725 TGAAGTTGCTTTGATTCGCC 57.295 45.000 0.00 0.00 0.00 5.54
4024 7730 4.748277 TTCGCCTAGCTATTTACCTGTT 57.252 40.909 0.00 0.00 0.00 3.16
4056 7762 6.573617 CAAAAACTGGACACTTGTTCATTC 57.426 37.500 0.00 0.00 32.18 2.67
4069 7775 7.122055 ACACTTGTTCATTCAACTTTGGAAGTA 59.878 33.333 0.00 0.00 41.91 2.24
4093 7799 4.314961 ACTTATGCCGCGATTGATCATAA 58.685 39.130 8.23 10.03 0.00 1.90
4143 7849 2.673368 GCTAACGGAGAATGGACAACTG 59.327 50.000 0.00 0.00 0.00 3.16
4233 7939 7.392113 TCCATAACGAGTCACCACAAATTAATT 59.608 33.333 0.00 0.00 0.00 1.40
4238 7944 6.374333 ACGAGTCACCACAAATTAATTGCTAT 59.626 34.615 0.39 0.00 43.13 2.97
4497 8204 0.032815 GTGCCGGATCTAGAGAAGGC 59.967 60.000 21.41 21.41 40.82 4.35
4671 8378 0.804989 CGCCAGTTCATCTTGGAACC 59.195 55.000 2.68 0.00 46.52 3.62
4723 8432 9.750125 AATTCTTTAGTTGTTGTCAATCCTTTC 57.250 29.630 0.00 0.00 35.92 2.62
4784 8494 2.679837 ACTAGCAATGTGTATGTGCAGC 59.320 45.455 0.00 0.00 40.83 5.25
4794 11955 0.880441 TATGTGCAGCGCATGTGTTT 59.120 45.000 28.33 7.19 41.91 2.83
4795 11956 0.032403 ATGTGCAGCGCATGTGTTTT 59.968 45.000 20.85 0.00 41.91 2.43
4796 11957 0.665298 TGTGCAGCGCATGTGTTTTA 59.335 45.000 11.47 0.00 41.91 1.52
4810 11971 8.889000 CGCATGTGTTTTAAAAAGTAGACTAAC 58.111 33.333 1.31 0.00 0.00 2.34
4973 12649 1.876156 CTCTGAAGCACAACCAAGACC 59.124 52.381 0.00 0.00 0.00 3.85
5275 13126 0.865769 GGTACAAGCAACTGGACACG 59.134 55.000 0.00 0.00 31.07 4.49
5302 13153 1.942657 TGTGAAGCAGTTCAGAACAGC 59.057 47.619 20.22 20.22 43.55 4.40
5305 13156 1.835483 AAGCAGTTCAGAACAGCGCG 61.835 55.000 21.22 0.00 46.98 6.86
5386 13237 3.620488 TGAACTGCTTTCAGAACCTGTT 58.380 40.909 0.00 5.46 42.95 3.16
5500 13353 5.065988 GCTTGAACTAGCCATTTCCGAATTA 59.934 40.000 0.00 0.00 35.06 1.40
5561 13414 4.041321 AGGTTTGTACTCTCCTGGGTTTAC 59.959 45.833 0.00 0.00 0.00 2.01
5565 13418 1.657804 ACTCTCCTGGGTTTACTGGG 58.342 55.000 0.00 0.00 0.00 4.45
5566 13419 1.151413 ACTCTCCTGGGTTTACTGGGA 59.849 52.381 0.00 0.00 0.00 4.37
5572 13425 1.279271 CTGGGTTTACTGGGAGAGGTG 59.721 57.143 0.00 0.00 0.00 4.00
5587 13440 0.901580 AGGTGCCAAATGCTTCCAGG 60.902 55.000 0.00 0.00 42.00 4.45
5605 13458 2.751806 CAGGGCATCAAGGAAGAACTTC 59.248 50.000 6.06 6.06 38.80 3.01
5635 13488 5.049405 CGGAACAATACCCTGCTTATTCATC 60.049 44.000 0.00 0.00 0.00 2.92
5636 13489 5.241728 GGAACAATACCCTGCTTATTCATCC 59.758 44.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.550030 GCAGACGCAAACCATAGTTGTTT 60.550 43.478 0.00 0.00 35.97 2.83
1 2 2.031157 GCAGACGCAAACCATAGTTGTT 60.031 45.455 0.00 0.00 35.97 2.83
2 3 1.535462 GCAGACGCAAACCATAGTTGT 59.465 47.619 0.00 0.00 35.97 3.32
3 4 1.806542 AGCAGACGCAAACCATAGTTG 59.193 47.619 0.00 0.00 42.27 3.16
4 5 2.076863 GAGCAGACGCAAACCATAGTT 58.923 47.619 0.00 0.00 42.27 2.24
7 8 1.675714 CCTGAGCAGACGCAAACCATA 60.676 52.381 0.00 0.00 42.27 2.74
8 9 0.957395 CCTGAGCAGACGCAAACCAT 60.957 55.000 0.00 0.00 42.27 3.55
9 10 1.597854 CCTGAGCAGACGCAAACCA 60.598 57.895 0.00 0.00 42.27 3.67
10 11 2.970974 GCCTGAGCAGACGCAAACC 61.971 63.158 0.00 0.00 42.27 3.27
11 12 2.558313 GCCTGAGCAGACGCAAAC 59.442 61.111 0.00 0.00 42.27 2.93
12 13 2.669569 GGCCTGAGCAGACGCAAA 60.670 61.111 0.00 0.00 42.56 3.68
13 14 1.826340 TAAGGCCTGAGCAGACGCAA 61.826 55.000 5.69 0.00 42.56 4.85
14 15 1.826340 TTAAGGCCTGAGCAGACGCA 61.826 55.000 5.69 0.00 42.56 5.24
15 16 0.462759 ATTAAGGCCTGAGCAGACGC 60.463 55.000 5.69 0.00 42.56 5.19
16 17 1.134699 TGATTAAGGCCTGAGCAGACG 60.135 52.381 5.69 0.00 42.56 4.18
17 18 2.284190 GTGATTAAGGCCTGAGCAGAC 58.716 52.381 5.69 0.00 42.56 3.51
18 19 1.908619 TGTGATTAAGGCCTGAGCAGA 59.091 47.619 5.69 2.69 42.56 4.26
19 20 2.408271 TGTGATTAAGGCCTGAGCAG 57.592 50.000 5.69 0.00 42.56 4.24
20 21 4.392047 CATATGTGATTAAGGCCTGAGCA 58.608 43.478 5.69 4.26 42.56 4.26
21 22 3.190118 GCATATGTGATTAAGGCCTGAGC 59.810 47.826 5.69 0.88 38.76 4.26
22 23 3.434641 CGCATATGTGATTAAGGCCTGAG 59.565 47.826 5.69 0.00 0.00 3.35
23 24 3.402110 CGCATATGTGATTAAGGCCTGA 58.598 45.455 5.69 0.00 0.00 3.86
24 25 2.485426 CCGCATATGTGATTAAGGCCTG 59.515 50.000 17.89 0.00 0.00 4.85
25 26 2.553028 CCCGCATATGTGATTAAGGCCT 60.553 50.000 17.89 0.00 0.00 5.19
26 27 1.812571 CCCGCATATGTGATTAAGGCC 59.187 52.381 17.89 0.00 0.00 5.19
27 28 1.200020 GCCCGCATATGTGATTAAGGC 59.800 52.381 17.89 16.19 0.00 4.35
28 29 2.503331 TGCCCGCATATGTGATTAAGG 58.497 47.619 17.89 10.52 0.00 2.69
29 30 3.304659 GGTTGCCCGCATATGTGATTAAG 60.305 47.826 17.89 0.33 0.00 1.85
30 31 2.621055 GGTTGCCCGCATATGTGATTAA 59.379 45.455 17.89 6.42 0.00 1.40
31 32 2.226330 GGTTGCCCGCATATGTGATTA 58.774 47.619 17.89 0.41 0.00 1.75
32 33 1.032014 GGTTGCCCGCATATGTGATT 58.968 50.000 17.89 0.00 0.00 2.57
33 34 0.106769 TGGTTGCCCGCATATGTGAT 60.107 50.000 17.89 0.00 0.00 3.06
34 35 0.322906 TTGGTTGCCCGCATATGTGA 60.323 50.000 17.89 0.00 0.00 3.58
35 36 0.529833 TTTGGTTGCCCGCATATGTG 59.470 50.000 9.39 9.39 0.00 3.21
36 37 0.530288 GTTTGGTTGCCCGCATATGT 59.470 50.000 4.29 0.00 0.00 2.29
37 38 0.529833 TGTTTGGTTGCCCGCATATG 59.470 50.000 0.00 0.00 0.00 1.78
38 39 0.530288 GTGTTTGGTTGCCCGCATAT 59.470 50.000 0.00 0.00 0.00 1.78
39 40 1.528292 GGTGTTTGGTTGCCCGCATA 61.528 55.000 0.00 0.00 0.00 3.14
40 41 2.733945 GTGTTTGGTTGCCCGCAT 59.266 55.556 0.00 0.00 0.00 4.73
41 42 3.532155 GGTGTTTGGTTGCCCGCA 61.532 61.111 0.00 0.00 0.00 5.69
42 43 2.969677 CTTGGTGTTTGGTTGCCCGC 62.970 60.000 0.00 0.00 0.00 6.13
43 44 1.067250 CTTGGTGTTTGGTTGCCCG 59.933 57.895 0.00 0.00 0.00 6.13
44 45 1.227527 GCTTGGTGTTTGGTTGCCC 60.228 57.895 0.00 0.00 0.00 5.36
45 46 1.227527 GGCTTGGTGTTTGGTTGCC 60.228 57.895 0.00 0.00 0.00 4.52
46 47 1.227527 GGGCTTGGTGTTTGGTTGC 60.228 57.895 0.00 0.00 0.00 4.17
47 48 0.539051 TTGGGCTTGGTGTTTGGTTG 59.461 50.000 0.00 0.00 0.00 3.77
48 49 1.280457 TTTGGGCTTGGTGTTTGGTT 58.720 45.000 0.00 0.00 0.00 3.67
49 50 1.209261 CTTTTGGGCTTGGTGTTTGGT 59.791 47.619 0.00 0.00 0.00 3.67
50 51 1.209261 ACTTTTGGGCTTGGTGTTTGG 59.791 47.619 0.00 0.00 0.00 3.28
51 52 2.278854 CACTTTTGGGCTTGGTGTTTG 58.721 47.619 0.00 0.00 0.00 2.93
52 53 2.689553 CACTTTTGGGCTTGGTGTTT 57.310 45.000 0.00 0.00 0.00 2.83
62 63 2.028839 TGCATCAATGAGCACTTTTGGG 60.029 45.455 3.84 0.00 35.51 4.12
63 64 3.306917 TGCATCAATGAGCACTTTTGG 57.693 42.857 3.84 0.00 35.51 3.28
75 76 1.406341 GGTTGCCTGCATTGCATCAAT 60.406 47.619 21.42 0.00 38.13 2.57
76 77 0.037139 GGTTGCCTGCATTGCATCAA 60.037 50.000 12.53 15.50 38.13 2.57
77 78 1.186267 TGGTTGCCTGCATTGCATCA 61.186 50.000 12.53 10.40 38.13 3.07
78 79 0.037139 TTGGTTGCCTGCATTGCATC 60.037 50.000 12.53 7.85 38.13 3.91
79 80 0.397187 TTTGGTTGCCTGCATTGCAT 59.603 45.000 12.53 0.00 38.13 3.96
80 81 0.532417 GTTTGGTTGCCTGCATTGCA 60.532 50.000 11.50 11.50 36.84 4.08
81 82 0.532417 TGTTTGGTTGCCTGCATTGC 60.532 50.000 0.46 0.46 0.00 3.56
82 83 1.598601 GTTGTTTGGTTGCCTGCATTG 59.401 47.619 0.00 0.00 0.00 2.82
83 84 1.209019 TGTTGTTTGGTTGCCTGCATT 59.791 42.857 0.00 0.00 0.00 3.56
84 85 0.829333 TGTTGTTTGGTTGCCTGCAT 59.171 45.000 0.00 0.00 0.00 3.96
85 86 0.829333 ATGTTGTTTGGTTGCCTGCA 59.171 45.000 0.00 0.00 0.00 4.41
86 87 2.810439 TATGTTGTTTGGTTGCCTGC 57.190 45.000 0.00 0.00 0.00 4.85
87 88 7.715657 ACATATATATGTTGTTTGGTTGCCTG 58.284 34.615 20.49 0.00 43.99 4.85
88 89 7.896383 ACATATATATGTTGTTTGGTTGCCT 57.104 32.000 20.49 0.00 43.99 4.75
102 103 9.585099 AACAAGCAACAAACCAACATATATATG 57.415 29.630 19.21 19.21 39.55 1.78
104 105 9.988815 AAAACAAGCAACAAACCAACATATATA 57.011 25.926 0.00 0.00 0.00 0.86
105 106 8.900983 AAAACAAGCAACAAACCAACATATAT 57.099 26.923 0.00 0.00 0.00 0.86
106 107 8.607459 CAAAAACAAGCAACAAACCAACATATA 58.393 29.630 0.00 0.00 0.00 0.86
107 108 7.120432 ACAAAAACAAGCAACAAACCAACATAT 59.880 29.630 0.00 0.00 0.00 1.78
108 109 6.428159 ACAAAAACAAGCAACAAACCAACATA 59.572 30.769 0.00 0.00 0.00 2.29
109 110 5.240403 ACAAAAACAAGCAACAAACCAACAT 59.760 32.000 0.00 0.00 0.00 2.71
110 111 4.576463 ACAAAAACAAGCAACAAACCAACA 59.424 33.333 0.00 0.00 0.00 3.33
111 112 5.102020 ACAAAAACAAGCAACAAACCAAC 57.898 34.783 0.00 0.00 0.00 3.77
112 113 5.296780 TGAACAAAAACAAGCAACAAACCAA 59.703 32.000 0.00 0.00 0.00 3.67
113 114 4.816385 TGAACAAAAACAAGCAACAAACCA 59.184 33.333 0.00 0.00 0.00 3.67
114 115 5.349824 TGAACAAAAACAAGCAACAAACC 57.650 34.783 0.00 0.00 0.00 3.27
115 116 7.850268 AATTGAACAAAAACAAGCAACAAAC 57.150 28.000 0.00 0.00 0.00 2.93
116 117 8.233190 CCTAATTGAACAAAAACAAGCAACAAA 58.767 29.630 0.00 0.00 0.00 2.83
117 118 7.625185 GCCTAATTGAACAAAAACAAGCAACAA 60.625 33.333 0.00 0.00 0.00 2.83
118 119 6.183360 GCCTAATTGAACAAAAACAAGCAACA 60.183 34.615 0.00 0.00 0.00 3.33
119 120 6.037062 AGCCTAATTGAACAAAAACAAGCAAC 59.963 34.615 0.00 0.00 0.00 4.17
120 121 6.036953 CAGCCTAATTGAACAAAAACAAGCAA 59.963 34.615 0.00 0.00 0.00 3.91
121 122 5.523188 CAGCCTAATTGAACAAAAACAAGCA 59.477 36.000 0.00 0.00 0.00 3.91
122 123 5.050159 CCAGCCTAATTGAACAAAAACAAGC 60.050 40.000 0.00 0.00 0.00 4.01
123 124 5.466393 CCCAGCCTAATTGAACAAAAACAAG 59.534 40.000 0.00 0.00 0.00 3.16
124 125 5.104735 ACCCAGCCTAATTGAACAAAAACAA 60.105 36.000 0.00 0.00 0.00 2.83
125 126 4.407296 ACCCAGCCTAATTGAACAAAAACA 59.593 37.500 0.00 0.00 0.00 2.83
126 127 4.956085 ACCCAGCCTAATTGAACAAAAAC 58.044 39.130 0.00 0.00 0.00 2.43
127 128 5.622346 AACCCAGCCTAATTGAACAAAAA 57.378 34.783 0.00 0.00 0.00 1.94
128 129 6.551601 TCTTAACCCAGCCTAATTGAACAAAA 59.448 34.615 0.00 0.00 0.00 2.44
129 130 6.071984 TCTTAACCCAGCCTAATTGAACAAA 58.928 36.000 0.00 0.00 0.00 2.83
130 131 5.636123 TCTTAACCCAGCCTAATTGAACAA 58.364 37.500 0.00 0.00 0.00 2.83
131 132 5.249780 TCTTAACCCAGCCTAATTGAACA 57.750 39.130 0.00 0.00 0.00 3.18
132 133 5.067805 CCATCTTAACCCAGCCTAATTGAAC 59.932 44.000 0.00 0.00 0.00 3.18
133 134 5.200483 CCATCTTAACCCAGCCTAATTGAA 58.800 41.667 0.00 0.00 0.00 2.69
134 135 4.386312 CCCATCTTAACCCAGCCTAATTGA 60.386 45.833 0.00 0.00 0.00 2.57
135 136 3.891366 CCCATCTTAACCCAGCCTAATTG 59.109 47.826 0.00 0.00 0.00 2.32
136 137 3.117131 CCCCATCTTAACCCAGCCTAATT 60.117 47.826 0.00 0.00 0.00 1.40
137 138 2.447047 CCCCATCTTAACCCAGCCTAAT 59.553 50.000 0.00 0.00 0.00 1.73
138 139 1.850345 CCCCATCTTAACCCAGCCTAA 59.150 52.381 0.00 0.00 0.00 2.69
139 140 1.010294 TCCCCATCTTAACCCAGCCTA 59.990 52.381 0.00 0.00 0.00 3.93
140 141 0.253630 TCCCCATCTTAACCCAGCCT 60.254 55.000 0.00 0.00 0.00 4.58
141 142 0.853530 ATCCCCATCTTAACCCAGCC 59.146 55.000 0.00 0.00 0.00 4.85
142 143 1.494721 TCATCCCCATCTTAACCCAGC 59.505 52.381 0.00 0.00 0.00 4.85
143 144 3.951563 TTCATCCCCATCTTAACCCAG 57.048 47.619 0.00 0.00 0.00 4.45
144 145 4.545678 CATTTCATCCCCATCTTAACCCA 58.454 43.478 0.00 0.00 0.00 4.51
145 146 3.321968 GCATTTCATCCCCATCTTAACCC 59.678 47.826 0.00 0.00 0.00 4.11
146 147 3.960102 TGCATTTCATCCCCATCTTAACC 59.040 43.478 0.00 0.00 0.00 2.85
147 148 4.038402 CCTGCATTTCATCCCCATCTTAAC 59.962 45.833 0.00 0.00 0.00 2.01
148 149 4.217510 CCTGCATTTCATCCCCATCTTAA 58.782 43.478 0.00 0.00 0.00 1.85
149 150 3.205056 ACCTGCATTTCATCCCCATCTTA 59.795 43.478 0.00 0.00 0.00 2.10
150 151 2.023695 ACCTGCATTTCATCCCCATCTT 60.024 45.455 0.00 0.00 0.00 2.40
151 152 1.572415 ACCTGCATTTCATCCCCATCT 59.428 47.619 0.00 0.00 0.00 2.90
152 153 1.684983 CACCTGCATTTCATCCCCATC 59.315 52.381 0.00 0.00 0.00 3.51
153 154 1.784358 CACCTGCATTTCATCCCCAT 58.216 50.000 0.00 0.00 0.00 4.00
154 155 0.971959 GCACCTGCATTTCATCCCCA 60.972 55.000 0.00 0.00 41.59 4.96
155 156 1.679559 GGCACCTGCATTTCATCCCC 61.680 60.000 0.00 0.00 44.36 4.81
156 157 1.818555 GGCACCTGCATTTCATCCC 59.181 57.895 0.00 0.00 44.36 3.85
157 158 1.315257 ACGGCACCTGCATTTCATCC 61.315 55.000 0.00 0.00 44.36 3.51
158 159 0.527565 AACGGCACCTGCATTTCATC 59.472 50.000 0.00 0.00 44.36 2.92
159 160 0.244450 CAACGGCACCTGCATTTCAT 59.756 50.000 0.00 0.00 44.36 2.57
160 161 1.659233 CAACGGCACCTGCATTTCA 59.341 52.632 0.00 0.00 44.36 2.69
161 162 1.734117 GCAACGGCACCTGCATTTC 60.734 57.895 0.00 0.00 44.36 2.17
162 163 2.202395 AGCAACGGCACCTGCATTT 61.202 52.632 4.01 0.00 44.61 2.32
163 164 2.598394 AGCAACGGCACCTGCATT 60.598 55.556 4.01 0.00 44.61 3.56
164 165 3.367743 CAGCAACGGCACCTGCAT 61.368 61.111 4.01 0.00 44.61 3.96
167 168 3.547249 CTTGCAGCAACGGCACCTG 62.547 63.158 2.83 0.00 44.61 4.00
168 169 3.289834 CTTGCAGCAACGGCACCT 61.290 61.111 2.83 0.00 44.61 4.00
169 170 4.347453 CCTTGCAGCAACGGCACC 62.347 66.667 2.83 0.00 44.61 5.01
177 178 1.143620 GTTTGGTTGCCTTGCAGCA 59.856 52.632 5.32 0.00 41.44 4.41
178 179 1.143620 TGTTTGGTTGCCTTGCAGC 59.856 52.632 0.00 0.00 40.61 5.25
179 180 0.871163 CGTGTTTGGTTGCCTTGCAG 60.871 55.000 0.00 0.00 40.61 4.41
180 181 1.140589 CGTGTTTGGTTGCCTTGCA 59.859 52.632 0.00 0.00 36.47 4.08
181 182 2.237066 GCGTGTTTGGTTGCCTTGC 61.237 57.895 0.00 0.00 0.00 4.01
182 183 1.591327 GGCGTGTTTGGTTGCCTTG 60.591 57.895 0.00 0.00 44.16 3.61
183 184 2.791868 GGGCGTGTTTGGTTGCCTT 61.792 57.895 1.77 0.00 46.72 4.35
184 185 3.223589 GGGCGTGTTTGGTTGCCT 61.224 61.111 1.77 0.00 46.72 4.75
185 186 4.293648 GGGGCGTGTTTGGTTGCC 62.294 66.667 0.00 0.00 46.82 4.52
186 187 1.457009 TAAGGGGCGTGTTTGGTTGC 61.457 55.000 0.00 0.00 0.00 4.17
187 188 1.253100 ATAAGGGGCGTGTTTGGTTG 58.747 50.000 0.00 0.00 0.00 3.77
188 189 1.616374 CAATAAGGGGCGTGTTTGGTT 59.384 47.619 0.00 0.00 0.00 3.67
189 190 1.253100 CAATAAGGGGCGTGTTTGGT 58.747 50.000 0.00 0.00 0.00 3.67
190 191 0.108851 GCAATAAGGGGCGTGTTTGG 60.109 55.000 0.00 0.00 0.00 3.28
191 192 3.416955 GCAATAAGGGGCGTGTTTG 57.583 52.632 0.00 0.00 0.00 2.93
198 199 2.548480 GAGATTACACGCAATAAGGGGC 59.452 50.000 0.00 0.00 33.80 5.80
199 200 3.560068 GTGAGATTACACGCAATAAGGGG 59.440 47.826 0.00 0.00 33.80 4.79
200 201 4.271049 CAGTGAGATTACACGCAATAAGGG 59.729 45.833 0.00 0.00 44.35 3.95
201 202 5.109210 TCAGTGAGATTACACGCAATAAGG 58.891 41.667 0.00 0.00 44.35 2.69
202 203 6.643845 CATCAGTGAGATTACACGCAATAAG 58.356 40.000 0.00 0.00 44.35 1.73
203 204 5.006649 GCATCAGTGAGATTACACGCAATAA 59.993 40.000 0.00 0.00 44.35 1.40
204 205 4.507756 GCATCAGTGAGATTACACGCAATA 59.492 41.667 0.00 0.00 44.35 1.90
205 206 3.310774 GCATCAGTGAGATTACACGCAAT 59.689 43.478 0.00 0.00 44.35 3.56
206 207 2.672874 GCATCAGTGAGATTACACGCAA 59.327 45.455 0.00 0.00 44.35 4.85
207 208 2.270923 GCATCAGTGAGATTACACGCA 58.729 47.619 0.00 0.00 44.35 5.24
208 209 2.270923 TGCATCAGTGAGATTACACGC 58.729 47.619 0.00 0.00 44.35 5.34
209 210 3.308053 CCTTGCATCAGTGAGATTACACG 59.692 47.826 0.00 0.00 44.35 4.49
210 211 3.064545 GCCTTGCATCAGTGAGATTACAC 59.935 47.826 0.00 0.00 40.60 2.90
211 212 3.054875 AGCCTTGCATCAGTGAGATTACA 60.055 43.478 0.00 0.00 33.72 2.41
212 213 3.539604 AGCCTTGCATCAGTGAGATTAC 58.460 45.455 0.00 0.00 33.72 1.89
213 214 3.920231 AGCCTTGCATCAGTGAGATTA 57.080 42.857 0.00 0.00 33.72 1.75
214 215 2.803030 AGCCTTGCATCAGTGAGATT 57.197 45.000 0.00 0.00 33.72 2.40
215 216 3.496337 CCATAGCCTTGCATCAGTGAGAT 60.496 47.826 0.00 0.00 37.48 2.75
216 217 2.158856 CCATAGCCTTGCATCAGTGAGA 60.159 50.000 0.00 0.00 0.00 3.27
217 218 2.219458 CCATAGCCTTGCATCAGTGAG 58.781 52.381 0.00 0.00 0.00 3.51
218 219 1.748244 GCCATAGCCTTGCATCAGTGA 60.748 52.381 0.00 0.00 0.00 3.41
219 220 0.666913 GCCATAGCCTTGCATCAGTG 59.333 55.000 0.00 0.00 0.00 3.66
220 221 0.549950 AGCCATAGCCTTGCATCAGT 59.450 50.000 0.00 0.00 41.25 3.41
221 222 0.952280 CAGCCATAGCCTTGCATCAG 59.048 55.000 0.00 0.00 41.25 2.90
222 223 0.547553 TCAGCCATAGCCTTGCATCA 59.452 50.000 0.00 0.00 41.25 3.07
223 224 1.906990 ATCAGCCATAGCCTTGCATC 58.093 50.000 0.00 0.00 41.25 3.91
224 225 2.641321 TCTATCAGCCATAGCCTTGCAT 59.359 45.455 0.00 0.00 41.25 3.96
225 226 2.049372 TCTATCAGCCATAGCCTTGCA 58.951 47.619 0.00 0.00 41.25 4.08
226 227 2.421619 GTCTATCAGCCATAGCCTTGC 58.578 52.381 0.00 0.00 41.25 4.01
227 228 2.369860 TGGTCTATCAGCCATAGCCTTG 59.630 50.000 11.62 0.00 41.25 3.61
228 229 2.636893 CTGGTCTATCAGCCATAGCCTT 59.363 50.000 11.62 0.00 41.25 4.35
229 230 2.158249 TCTGGTCTATCAGCCATAGCCT 60.158 50.000 11.62 0.00 41.25 4.58
230 231 2.251818 TCTGGTCTATCAGCCATAGCC 58.748 52.381 0.00 2.56 41.25 3.93
231 232 5.867903 ATATCTGGTCTATCAGCCATAGC 57.132 43.478 0.00 0.00 35.27 2.97
232 233 8.584157 GGATAATATCTGGTCTATCAGCCATAG 58.416 40.741 0.00 0.00 36.50 2.23
233 234 7.231519 CGGATAATATCTGGTCTATCAGCCATA 59.768 40.741 1.15 0.00 34.91 2.74
234 235 6.041409 CGGATAATATCTGGTCTATCAGCCAT 59.959 42.308 1.15 0.00 34.91 4.40
235 236 5.360999 CGGATAATATCTGGTCTATCAGCCA 59.639 44.000 1.15 0.00 34.91 4.75
236 237 5.361285 ACGGATAATATCTGGTCTATCAGCC 59.639 44.000 13.15 0.00 40.02 4.85
237 238 6.458232 ACGGATAATATCTGGTCTATCAGC 57.542 41.667 13.15 0.00 40.02 4.26
238 239 8.788806 GGATACGGATAATATCTGGTCTATCAG 58.211 40.741 13.15 0.00 40.02 2.90
239 240 7.724506 GGGATACGGATAATATCTGGTCTATCA 59.275 40.741 13.15 0.00 40.02 2.15
240 241 7.945664 AGGGATACGGATAATATCTGGTCTATC 59.054 40.741 13.15 10.46 40.02 2.08
241 242 7.827787 AGGGATACGGATAATATCTGGTCTAT 58.172 38.462 13.15 2.93 40.02 1.98
242 243 7.222180 AGGGATACGGATAATATCTGGTCTA 57.778 40.000 13.15 0.00 40.02 2.59
243 244 6.093617 AGGGATACGGATAATATCTGGTCT 57.906 41.667 13.15 0.00 40.02 3.85
244 245 6.183360 GGAAGGGATACGGATAATATCTGGTC 60.183 46.154 13.15 10.08 40.02 4.02
245 246 5.661759 GGAAGGGATACGGATAATATCTGGT 59.338 44.000 13.15 8.03 40.02 4.00
246 247 5.070580 GGGAAGGGATACGGATAATATCTGG 59.929 48.000 13.15 2.83 40.02 3.86
247 248 5.900123 AGGGAAGGGATACGGATAATATCTG 59.100 44.000 7.51 7.51 41.49 2.90
248 249 6.106407 AGGGAAGGGATACGGATAATATCT 57.894 41.667 0.00 0.00 37.60 1.98
249 250 5.304871 GGAGGGAAGGGATACGGATAATATC 59.695 48.000 0.00 0.00 37.60 1.63
250 251 5.217400 GGAGGGAAGGGATACGGATAATAT 58.783 45.833 0.00 0.00 37.60 1.28
251 252 4.573520 GGGAGGGAAGGGATACGGATAATA 60.574 50.000 0.00 0.00 37.60 0.98
252 253 3.451890 GGAGGGAAGGGATACGGATAAT 58.548 50.000 0.00 0.00 37.60 1.28
253 254 2.494063 GGGAGGGAAGGGATACGGATAA 60.494 54.545 0.00 0.00 37.60 1.75
254 255 1.078324 GGGAGGGAAGGGATACGGATA 59.922 57.143 0.00 0.00 37.60 2.59
255 256 0.178900 GGGAGGGAAGGGATACGGAT 60.179 60.000 0.00 0.00 37.60 4.18
256 257 1.235112 GGGAGGGAAGGGATACGGA 59.765 63.158 0.00 0.00 37.60 4.69
257 258 0.693092 TTGGGAGGGAAGGGATACGG 60.693 60.000 0.00 0.00 37.60 4.02
258 259 0.468648 GTTGGGAGGGAAGGGATACG 59.531 60.000 0.00 0.00 37.60 3.06
259 260 1.591768 TGTTGGGAGGGAAGGGATAC 58.408 55.000 0.00 0.00 0.00 2.24
260 261 2.605825 ATGTTGGGAGGGAAGGGATA 57.394 50.000 0.00 0.00 0.00 2.59
261 262 1.698874 AATGTTGGGAGGGAAGGGAT 58.301 50.000 0.00 0.00 0.00 3.85
262 263 1.466858 AAATGTTGGGAGGGAAGGGA 58.533 50.000 0.00 0.00 0.00 4.20
263 264 1.901833 CAAAATGTTGGGAGGGAAGGG 59.098 52.381 0.00 0.00 0.00 3.95
274 275 5.447548 CCACTTTGTTCAAGCCAAAATGTTG 60.448 40.000 0.00 0.00 35.65 3.33
275 276 4.635324 CCACTTTGTTCAAGCCAAAATGTT 59.365 37.500 0.00 0.00 35.65 2.71
276 277 4.190772 CCACTTTGTTCAAGCCAAAATGT 58.809 39.130 0.00 0.00 35.65 2.71
277 278 4.190772 ACCACTTTGTTCAAGCCAAAATG 58.809 39.130 0.00 0.00 35.65 2.32
278 279 4.162131 AGACCACTTTGTTCAAGCCAAAAT 59.838 37.500 0.00 0.00 35.65 1.82
279 280 3.513515 AGACCACTTTGTTCAAGCCAAAA 59.486 39.130 0.00 0.00 35.65 2.44
280 281 3.096092 AGACCACTTTGTTCAAGCCAAA 58.904 40.909 0.00 0.00 35.65 3.28
281 282 2.733956 AGACCACTTTGTTCAAGCCAA 58.266 42.857 0.00 0.00 35.65 4.52
282 283 2.435372 AGACCACTTTGTTCAAGCCA 57.565 45.000 0.00 0.00 35.65 4.75
695 696 8.974238 TCTGCCTTGATTATCTGAAATGAATTT 58.026 29.630 0.00 0.00 0.00 1.82
696 697 8.529424 TCTGCCTTGATTATCTGAAATGAATT 57.471 30.769 0.00 0.00 0.00 2.17
697 698 8.529424 TTCTGCCTTGATTATCTGAAATGAAT 57.471 30.769 0.00 0.00 0.00 2.57
698 699 7.943079 TTCTGCCTTGATTATCTGAAATGAA 57.057 32.000 0.00 0.00 0.00 2.57
699 700 7.414429 CGTTTCTGCCTTGATTATCTGAAATGA 60.414 37.037 0.00 0.00 36.43 2.57
700 701 6.690098 CGTTTCTGCCTTGATTATCTGAAATG 59.310 38.462 0.00 0.00 32.11 2.32
701 702 6.183360 CCGTTTCTGCCTTGATTATCTGAAAT 60.183 38.462 0.00 0.00 32.11 2.17
702 703 5.123820 CCGTTTCTGCCTTGATTATCTGAAA 59.876 40.000 0.00 0.00 0.00 2.69
773 776 4.231439 GGATACGGCCGGTGGTCC 62.231 72.222 31.76 24.54 0.00 4.46
774 777 4.231439 GGGATACGGCCGGTGGTC 62.231 72.222 31.76 19.90 37.60 4.02
775 778 2.668106 ATAGGGATACGGCCGGTGGT 62.668 60.000 31.76 11.18 37.60 4.16
776 779 1.885163 GATAGGGATACGGCCGGTGG 61.885 65.000 31.76 0.90 37.60 4.61
951 1121 1.369689 GTGCAAGCTCAACTGTGCG 60.370 57.895 1.66 0.00 39.31 5.34
958 1128 0.320421 GTACGAGGGTGCAAGCTCAA 60.320 55.000 0.00 0.00 0.00 3.02
965 1135 0.324368 AGATGAGGTACGAGGGTGCA 60.324 55.000 0.00 0.00 0.00 4.57
1085 1266 3.417275 ATTGCGCGTCGAGGAGGAG 62.417 63.158 8.43 0.00 0.00 3.69
1086 1267 3.449227 ATTGCGCGTCGAGGAGGA 61.449 61.111 8.43 3.76 0.00 3.71
1087 1268 3.257561 CATTGCGCGTCGAGGAGG 61.258 66.667 8.43 0.64 0.00 4.30
1088 1269 3.918220 GCATTGCGCGTCGAGGAG 61.918 66.667 8.43 6.93 0.00 3.69
1117 1298 5.065704 AGATAGATACATGGTTAGCTGCG 57.934 43.478 0.00 0.00 0.00 5.18
1130 1311 9.030452 AGGTGTTTGAGATGGATAGATAGATAC 57.970 37.037 0.00 0.00 0.00 2.24
1133 1314 7.786943 AGAAGGTGTTTGAGATGGATAGATAGA 59.213 37.037 0.00 0.00 0.00 1.98
1134 1315 7.961351 AGAAGGTGTTTGAGATGGATAGATAG 58.039 38.462 0.00 0.00 0.00 2.08
1158 1342 0.800631 ACACGTGCATGCATGAGAAG 59.199 50.000 39.42 27.20 36.80 2.85
1237 1438 1.213799 GTCGTACGAGTTCCACCCC 59.786 63.158 20.18 0.00 0.00 4.95
1348 1549 0.744414 CAAGAACGACGGATGGCCAT 60.744 55.000 20.96 20.96 0.00 4.40
1349 1550 1.375396 CAAGAACGACGGATGGCCA 60.375 57.895 8.56 8.56 0.00 5.36
1350 1551 0.108520 TACAAGAACGACGGATGGCC 60.109 55.000 0.00 0.00 0.00 5.36
1351 1552 1.859080 GATACAAGAACGACGGATGGC 59.141 52.381 0.00 0.00 0.00 4.40
1352 1553 2.470821 GGATACAAGAACGACGGATGG 58.529 52.381 0.00 0.00 0.00 3.51
1354 1555 2.385803 AGGGATACAAGAACGACGGAT 58.614 47.619 0.00 0.00 39.74 4.18
1356 1557 2.667473 AAGGGATACAAGAACGACGG 57.333 50.000 0.00 0.00 39.74 4.79
1357 1558 3.846360 AGAAAGGGATACAAGAACGACG 58.154 45.455 0.00 0.00 39.74 5.12
1358 1559 5.617087 GCAAAGAAAGGGATACAAGAACGAC 60.617 44.000 0.00 0.00 39.74 4.34
1359 1560 4.454504 GCAAAGAAAGGGATACAAGAACGA 59.545 41.667 0.00 0.00 39.74 3.85
1360 1561 4.379499 GGCAAAGAAAGGGATACAAGAACG 60.379 45.833 0.00 0.00 39.74 3.95
1361 1562 4.767409 AGGCAAAGAAAGGGATACAAGAAC 59.233 41.667 0.00 0.00 39.74 3.01
1362 1563 4.766891 CAGGCAAAGAAAGGGATACAAGAA 59.233 41.667 0.00 0.00 39.74 2.52
1363 1564 4.335416 CAGGCAAAGAAAGGGATACAAGA 58.665 43.478 0.00 0.00 39.74 3.02
1364 1565 3.445096 CCAGGCAAAGAAAGGGATACAAG 59.555 47.826 0.00 0.00 39.74 3.16
1365 1566 3.430453 CCAGGCAAAGAAAGGGATACAA 58.570 45.455 0.00 0.00 39.74 2.41
1366 1567 2.883888 GCCAGGCAAAGAAAGGGATACA 60.884 50.000 6.55 0.00 39.74 2.29
1367 1568 1.751351 GCCAGGCAAAGAAAGGGATAC 59.249 52.381 6.55 0.00 0.00 2.24
1368 1569 1.640670 AGCCAGGCAAAGAAAGGGATA 59.359 47.619 15.80 0.00 0.00 2.59
1369 1570 0.411058 AGCCAGGCAAAGAAAGGGAT 59.589 50.000 15.80 0.00 0.00 3.85
1370 1571 1.072266 TAGCCAGGCAAAGAAAGGGA 58.928 50.000 15.80 0.00 0.00 4.20
1371 1572 1.177401 GTAGCCAGGCAAAGAAAGGG 58.823 55.000 15.80 0.00 0.00 3.95
1372 1573 1.177401 GGTAGCCAGGCAAAGAAAGG 58.823 55.000 15.80 0.00 0.00 3.11
1373 1574 1.909700 TGGTAGCCAGGCAAAGAAAG 58.090 50.000 15.80 0.00 0.00 2.62
1374 1575 2.238521 CTTGGTAGCCAGGCAAAGAAA 58.761 47.619 15.80 0.19 33.81 2.52
1375 1576 1.144913 ACTTGGTAGCCAGGCAAAGAA 59.855 47.619 15.80 0.00 33.66 2.52
1376 1577 0.771127 ACTTGGTAGCCAGGCAAAGA 59.229 50.000 15.80 0.00 33.66 2.52
1377 1578 1.541588 GAACTTGGTAGCCAGGCAAAG 59.458 52.381 15.80 13.62 33.66 2.77
1378 1579 1.133637 TGAACTTGGTAGCCAGGCAAA 60.134 47.619 15.80 0.00 33.66 3.68
1379 1580 0.476338 TGAACTTGGTAGCCAGGCAA 59.524 50.000 15.80 0.00 33.66 4.52
1380 1581 0.698238 ATGAACTTGGTAGCCAGGCA 59.302 50.000 15.80 0.00 33.66 4.75
1381 1582 2.092914 ACTATGAACTTGGTAGCCAGGC 60.093 50.000 1.84 1.84 33.66 4.85
1382 1583 3.914426 ACTATGAACTTGGTAGCCAGG 57.086 47.619 0.00 0.00 36.63 4.45
1387 1588 5.185454 TGCCATGAACTATGAACTTGGTAG 58.815 41.667 0.00 0.00 39.21 3.18
1409 1610 3.464907 AGAGAGAAATGCGTGATCCATG 58.535 45.455 0.00 0.00 0.00 3.66
1434 1872 2.096406 GTACTGCACGCACGCATG 59.904 61.111 0.00 0.00 42.06 4.06
1435 1873 3.478394 CGTACTGCACGCACGCAT 61.478 61.111 0.00 0.00 45.03 4.73
1499 1937 1.367599 CGAAGCCGTACGAGTCCTCT 61.368 60.000 18.76 0.78 0.00 3.69
1757 2198 9.038803 ACGAAGAAGAACGGTTATTATTATTCC 57.961 33.333 7.95 0.00 30.80 3.01
1763 2204 7.894376 TGAAACGAAGAAGAACGGTTATTAT 57.106 32.000 0.03 0.00 39.51 1.28
1765 2206 6.649557 AGATGAAACGAAGAAGAACGGTTATT 59.350 34.615 0.00 0.00 39.51 1.40
1766 2207 6.164176 AGATGAAACGAAGAAGAACGGTTAT 58.836 36.000 0.00 0.00 39.51 1.89
1767 2208 5.535333 AGATGAAACGAAGAAGAACGGTTA 58.465 37.500 0.00 0.00 39.51 2.85
1768 2209 4.377897 AGATGAAACGAAGAAGAACGGTT 58.622 39.130 0.00 0.00 42.09 4.44
1770 2211 4.447724 TGAAGATGAAACGAAGAAGAACGG 59.552 41.667 0.00 0.00 0.00 4.44
1771 2212 5.388890 CCTGAAGATGAAACGAAGAAGAACG 60.389 44.000 0.00 0.00 0.00 3.95
1772 2213 5.106908 CCCTGAAGATGAAACGAAGAAGAAC 60.107 44.000 0.00 0.00 0.00 3.01
1773 2214 4.997395 CCCTGAAGATGAAACGAAGAAGAA 59.003 41.667 0.00 0.00 0.00 2.52
1775 2216 4.569943 TCCCTGAAGATGAAACGAAGAAG 58.430 43.478 0.00 0.00 0.00 2.85
1803 2998 2.727392 CCGGCCATCCTCCACGTAA 61.727 63.158 2.24 0.00 0.00 3.18
1809 3004 4.996434 CATCGCCGGCCATCCTCC 62.996 72.222 23.46 0.00 0.00 4.30
1823 3018 2.947118 TATGTCGCGTGCCGTCCATC 62.947 60.000 5.77 0.00 38.35 3.51
1833 3028 2.494918 GTGAGGCCTATGTCGCGT 59.505 61.111 4.42 0.00 0.00 6.01
1860 3055 2.452813 ATTCGACATCCACGCGCAC 61.453 57.895 5.73 0.00 0.00 5.34
1878 3073 2.076100 GTGTTCACGCTCATGAATCCA 58.924 47.619 0.00 0.00 40.60 3.41
1984 3182 8.879427 AAAAATACTACTATGAAGTTTGGGCT 57.121 30.769 0.00 0.00 37.15 5.19
2039 3238 4.340097 AGTTTTAGGTTACCAACAGTTGCC 59.660 41.667 7.88 3.76 0.00 4.52
2128 3380 3.203263 TGCATACTCCTACCTCTGAGACT 59.797 47.826 6.17 0.00 32.84 3.24
2141 3393 2.227388 GGCTACATTGCATGCATACTCC 59.773 50.000 23.37 13.94 34.04 3.85
2146 3398 1.616865 GGATGGCTACATTGCATGCAT 59.383 47.619 23.37 9.62 37.47 3.96
2147 3399 1.034356 GGATGGCTACATTGCATGCA 58.966 50.000 18.46 18.46 37.47 3.96
2148 3400 1.034356 TGGATGGCTACATTGCATGC 58.966 50.000 11.82 11.82 37.47 4.06
2149 3401 2.292569 GAGTGGATGGCTACATTGCATG 59.707 50.000 0.00 0.00 37.47 4.06
2150 3402 2.174210 AGAGTGGATGGCTACATTGCAT 59.826 45.455 0.00 0.00 37.47 3.96
2151 3403 1.561076 AGAGTGGATGGCTACATTGCA 59.439 47.619 0.00 0.00 37.47 4.08
2152 3404 1.945394 CAGAGTGGATGGCTACATTGC 59.055 52.381 0.00 0.00 37.47 3.56
2153 3405 2.569059 CCAGAGTGGATGGCTACATTG 58.431 52.381 0.00 0.00 40.96 2.82
2163 3415 2.238144 CAACTGTGATCCCAGAGTGGAT 59.762 50.000 12.50 0.00 44.93 3.41
2226 3599 1.263217 GGGTCTGCAGTTAACACAACG 59.737 52.381 14.67 0.00 0.00 4.10
2231 3604 3.135712 TCTTTCAGGGTCTGCAGTTAACA 59.864 43.478 14.67 0.00 0.00 2.41
2311 3684 1.002624 TTGGGTGATGTTCTCGGCC 60.003 57.895 0.00 0.00 0.00 6.13
2338 3711 5.542635 GTCATCCCCTGTTATCCTGTACATA 59.457 44.000 0.00 0.00 0.00 2.29
2401 3852 1.578897 TGCTATCTGGTTACCTGGCA 58.421 50.000 8.40 7.40 0.00 4.92
2470 5097 7.497925 AGGTAGAACAAACTGACTGATTTTC 57.502 36.000 0.00 0.00 0.00 2.29
2486 5113 4.578928 TGCAGGTGAAAAAGAAGGTAGAAC 59.421 41.667 0.00 0.00 0.00 3.01
3069 5715 2.371841 TGGTTAACACCTGCATGAGAGT 59.628 45.455 8.10 0.00 44.61 3.24
3077 5723 1.977009 GGCCCTGGTTAACACCTGC 60.977 63.158 8.10 4.55 44.61 4.85
3306 6959 3.579151 GAGTAGGGTGGGTGATTAGATCC 59.421 52.174 0.00 0.00 0.00 3.36
3379 7032 7.503566 CAGGAATCTCCAGGCTTCAATTAATAA 59.496 37.037 0.00 0.00 39.61 1.40
3392 7045 0.034767 TTGCAGCAGGAATCTCCAGG 60.035 55.000 0.00 0.00 39.61 4.45
3480 7134 2.834549 AGACTGTTCATCGGGTTCTGAT 59.165 45.455 0.00 0.00 0.00 2.90
3582 7254 6.489700 TGCAAATGTGATCTTTTGAGGAACTA 59.510 34.615 15.80 0.00 41.55 2.24
3778 7451 0.681733 TGGTCTTCCTCACTGCTCAC 59.318 55.000 0.00 0.00 34.23 3.51
4000 7706 4.344102 ACAGGTAAATAGCTAGGCGAATCA 59.656 41.667 0.00 0.00 31.93 2.57
4001 7707 4.884247 ACAGGTAAATAGCTAGGCGAATC 58.116 43.478 0.00 0.00 31.93 2.52
4002 7708 4.957684 ACAGGTAAATAGCTAGGCGAAT 57.042 40.909 0.00 0.00 31.93 3.34
4004 7710 3.740141 GCAACAGGTAAATAGCTAGGCGA 60.740 47.826 0.00 0.00 31.93 5.54
4005 7711 2.544267 GCAACAGGTAAATAGCTAGGCG 59.456 50.000 0.00 0.00 31.93 5.52
4006 7712 2.544267 CGCAACAGGTAAATAGCTAGGC 59.456 50.000 0.00 0.00 31.93 3.93
4007 7713 3.802685 GTCGCAACAGGTAAATAGCTAGG 59.197 47.826 0.00 0.00 31.93 3.02
4008 7714 4.430007 TGTCGCAACAGGTAAATAGCTAG 58.570 43.478 0.00 0.00 31.93 3.42
4024 7730 1.732917 CCAGTTTTTGGCTGTCGCA 59.267 52.632 0.00 0.00 40.87 5.10
4056 7762 5.856455 CGGCATAAGTTTACTTCCAAAGTTG 59.144 40.000 0.00 0.00 42.81 3.16
4069 7775 2.942376 TGATCAATCGCGGCATAAGTTT 59.058 40.909 6.13 0.00 0.00 2.66
4093 7799 2.234414 CCTGCAGTTGTTATGGGCAAAT 59.766 45.455 13.81 0.00 33.58 2.32
4143 7849 4.006319 ACAATCCTGAGTAGCTGCTTTTC 58.994 43.478 7.79 6.81 0.00 2.29
4497 8204 0.538057 TGCCAACTTTCTCCCTGCAG 60.538 55.000 6.78 6.78 0.00 4.41
4671 8378 2.487934 CCAATCGTCCTATGCTTCCAG 58.512 52.381 0.00 0.00 0.00 3.86
4784 8494 8.889000 GTTAGTCTACTTTTTAAAACACATGCG 58.111 33.333 0.00 0.00 0.00 4.73
4815 11976 7.608761 TCTCGGTGCTTTAGGTAAATTTAATGT 59.391 33.333 0.00 0.00 0.00 2.71
4973 12649 7.941919 TGCTATACCTTCTGTTACTAGTGATG 58.058 38.462 5.39 0.00 0.00 3.07
5251 13100 3.134985 TGTCCAGTTGCTTGTACCAAGTA 59.865 43.478 5.92 0.00 0.00 2.24
5302 13153 0.032130 TAGCTTCTTGATAGGGCGCG 59.968 55.000 0.00 0.00 0.00 6.86
5305 13156 2.875317 GCAAGTAGCTTCTTGATAGGGC 59.125 50.000 30.50 14.35 45.11 5.19
5386 13237 0.179009 ACTCTGCAAGCAAGCCAGAA 60.179 50.000 0.00 0.00 0.00 3.02
5500 13353 5.480073 AGAGTCAAGTAGAGATTCTGCAAGT 59.520 40.000 0.00 0.00 31.82 3.16
5561 13414 1.318158 GCATTTGGCACCTCTCCCAG 61.318 60.000 0.00 0.00 43.97 4.45
5572 13425 2.285024 TGCCCTGGAAGCATTTGGC 61.285 57.895 0.00 0.00 45.30 4.52
5587 13440 6.457528 CGAATAAGAAGTTCTTCCTTGATGCC 60.458 42.308 21.25 5.08 37.89 4.40
5605 13458 4.451900 AGCAGGGTATTGTTCCGAATAAG 58.548 43.478 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.