Multiple sequence alignment - TraesCS6B01G332400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G332400 chr6B 100.000 4264 0 0 1 4264 583630001 583625738 0.000000e+00 7875
1 TraesCS6B01G332400 chr6B 96.296 81 1 2 3503 3582 693940031 693940110 9.620000e-27 132
2 TraesCS6B01G332400 chr6D 93.948 2710 108 17 559 3244 390833054 390835731 0.000000e+00 4045
3 TraesCS6B01G332400 chr6D 90.185 540 52 1 11 550 442277617 442277079 0.000000e+00 702
4 TraesCS6B01G332400 chr6D 88.545 550 54 8 1 547 390026850 390027393 0.000000e+00 658
5 TraesCS6B01G332400 chr6D 94.286 350 16 3 3153 3502 390835838 390836183 2.260000e-147 532
6 TraesCS6B01G332400 chr6D 84.008 494 35 14 3581 4042 390836187 390836668 6.550000e-118 435
7 TraesCS6B01G332400 chr6D 91.444 187 13 1 4078 4264 390836656 390836839 1.970000e-63 254
8 TraesCS6B01G332400 chr6D 96.739 92 3 0 3153 3244 390835739 390835830 2.050000e-33 154
9 TraesCS6B01G332400 chr6D 83.735 166 12 10 1876 2027 390834509 390834673 4.440000e-30 143
10 TraesCS6B01G332400 chr6D 93.827 81 2 3 3503 3581 42512837 42512916 7.490000e-23 119
11 TraesCS6B01G332400 chr6D 92.593 81 3 3 3503 3581 344165843 344165922 3.480000e-21 113
12 TraesCS6B01G332400 chr6A 93.516 1496 64 11 2022 3503 537314110 537315586 0.000000e+00 2194
13 TraesCS6B01G332400 chr6A 90.416 1513 93 24 549 2020 537312767 537314268 0.000000e+00 1943
14 TraesCS6B01G332400 chr6A 96.028 428 17 0 3580 4007 537315588 537316015 0.000000e+00 697
15 TraesCS6B01G332400 chr6A 96.277 188 6 1 4077 4264 537316056 537316242 1.490000e-79 307
16 TraesCS6B01G332400 chr5D 89.655 551 53 4 1 549 510060997 510061545 0.000000e+00 699
17 TraesCS6B01G332400 chr5D 92.771 83 2 4 3503 3582 190474020 190473939 2.690000e-22 117
18 TraesCS6B01G332400 chr2B 88.909 559 54 7 1 556 747813455 747812902 0.000000e+00 682
19 TraesCS6B01G332400 chr2B 87.477 551 65 4 1 549 402520393 402519845 2.160000e-177 632
20 TraesCS6B01G332400 chr3D 88.203 551 61 4 1 549 131491811 131492359 0.000000e+00 654
21 TraesCS6B01G332400 chr3D 88.225 552 56 9 1 549 50831028 50830483 0.000000e+00 651
22 TraesCS6B01G332400 chr3D 93.827 81 2 3 3503 3581 33368774 33368853 7.490000e-23 119
23 TraesCS6B01G332400 chr7D 87.659 551 64 4 1 549 523397953 523398501 4.650000e-179 638
24 TraesCS6B01G332400 chr7D 91.954 87 4 3 3503 3587 168059028 168058943 7.490000e-23 119
25 TraesCS6B01G332400 chr4D 87.004 554 65 7 1 550 484629073 484628523 6.060000e-173 617
26 TraesCS6B01G332400 chr4D 92.593 81 2 4 3499 3576 388098993 388099072 3.480000e-21 113
27 TraesCS6B01G332400 chr4B 91.667 84 6 1 3500 3583 604056683 604056765 9.690000e-22 115
28 TraesCS6B01G332400 chr3B 90.588 85 6 2 3500 3584 361219385 361219467 1.250000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G332400 chr6B 583625738 583630001 4263 True 7875.000000 7875 100.000000 1 4264 1 chr6B.!!$R1 4263
1 TraesCS6B01G332400 chr6D 390833054 390836839 3785 False 927.166667 4045 90.693333 559 4264 6 chr6D.!!$F4 3705
2 TraesCS6B01G332400 chr6D 442277079 442277617 538 True 702.000000 702 90.185000 11 550 1 chr6D.!!$R1 539
3 TraesCS6B01G332400 chr6D 390026850 390027393 543 False 658.000000 658 88.545000 1 547 1 chr6D.!!$F3 546
4 TraesCS6B01G332400 chr6A 537312767 537316242 3475 False 1285.250000 2194 94.059250 549 4264 4 chr6A.!!$F1 3715
5 TraesCS6B01G332400 chr5D 510060997 510061545 548 False 699.000000 699 89.655000 1 549 1 chr5D.!!$F1 548
6 TraesCS6B01G332400 chr2B 747812902 747813455 553 True 682.000000 682 88.909000 1 556 1 chr2B.!!$R2 555
7 TraesCS6B01G332400 chr2B 402519845 402520393 548 True 632.000000 632 87.477000 1 549 1 chr2B.!!$R1 548
8 TraesCS6B01G332400 chr3D 131491811 131492359 548 False 654.000000 654 88.203000 1 549 1 chr3D.!!$F2 548
9 TraesCS6B01G332400 chr3D 50830483 50831028 545 True 651.000000 651 88.225000 1 549 1 chr3D.!!$R1 548
10 TraesCS6B01G332400 chr7D 523397953 523398501 548 False 638.000000 638 87.659000 1 549 1 chr7D.!!$F1 548
11 TraesCS6B01G332400 chr4D 484628523 484629073 550 True 617.000000 617 87.004000 1 550 1 chr4D.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 660 0.033504 TTCGACCTGCTCCTGTGTTC 59.966 55.0 0.00 0.00 0.00 3.18 F
1283 1291 0.176910 CGGCCTTCCTCTCCTCTTTC 59.823 60.0 0.00 0.00 0.00 2.62 F
2859 2901 0.396435 TAGGAACACCAGTGGCAGTG 59.604 55.0 15.49 15.49 39.93 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1609 0.173708 CGGACTTCTCCTTTCCCTCG 59.826 60.0 0.0 0.0 33.79 4.63 R
3089 3131 0.320050 TGTATGCCAGTGAAGCGTCA 59.680 50.0 0.0 0.0 0.00 4.35 R
4047 4336 1.009078 TTTTGAGATGGAGATGCGCG 58.991 50.0 0.0 0.0 0.00 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 0.955428 ATGTTGTGCGGAACTGCGAT 60.955 50.000 0.00 0.00 37.81 4.58
79 80 5.629435 GCTAGTCAAAGGAAATTTCAAACGG 59.371 40.000 19.49 5.35 0.00 4.44
90 91 0.597898 TTCAAACGGTCGATCGTGCA 60.598 50.000 26.49 8.77 43.07 4.57
186 188 0.527600 CGAACCGATCGCCTGAATGA 60.528 55.000 10.32 0.00 45.89 2.57
195 197 1.546923 TCGCCTGAATGAAACCGTAGA 59.453 47.619 0.00 0.00 0.00 2.59
268 270 3.515502 TGTGTAGATCAGAGGGACAAAGG 59.484 47.826 0.00 0.00 0.00 3.11
273 275 4.171234 AGATCAGAGGGACAAAGGAAGAA 58.829 43.478 0.00 0.00 0.00 2.52
283 285 5.648526 GGGACAAAGGAAGAAAGGAGATTAC 59.351 44.000 0.00 0.00 0.00 1.89
285 287 6.887002 GGACAAAGGAAGAAAGGAGATTACAT 59.113 38.462 0.00 0.00 0.00 2.29
296 298 8.425703 AGAAAGGAGATTACATAGAAGCTTACC 58.574 37.037 0.00 0.00 0.00 2.85
298 300 6.069331 AGGAGATTACATAGAAGCTTACCGA 58.931 40.000 0.00 0.00 0.00 4.69
329 331 2.803956 AGACCTCACGTAATCACCTCA 58.196 47.619 0.00 0.00 0.00 3.86
331 333 1.201647 ACCTCACGTAATCACCTCACG 59.798 52.381 0.00 0.00 41.32 4.35
338 340 1.100510 TAATCACCTCACGTCCCTCG 58.899 55.000 0.00 0.00 46.00 4.63
480 483 2.054799 AGGCCTAACAGTGAAACCAGA 58.945 47.619 1.29 0.00 37.80 3.86
491 494 4.023291 AGTGAAACCAGACAACCAAACAT 58.977 39.130 0.00 0.00 37.80 2.71
499 502 4.278170 CCAGACAACCAAACATGCTTCTTA 59.722 41.667 0.00 0.00 0.00 2.10
507 510 3.418684 AACATGCTTCTTACTTCCCGT 57.581 42.857 0.00 0.00 0.00 5.28
557 560 1.830847 AAACACGCCCCCAAAGTCC 60.831 57.895 0.00 0.00 0.00 3.85
563 566 2.689813 CCCCCAAAGTCCCATCCC 59.310 66.667 0.00 0.00 0.00 3.85
566 569 1.307647 CCCAAAGTCCCATCCCCAG 59.692 63.158 0.00 0.00 0.00 4.45
607 610 1.338389 GGCTACCAAACGCCTACTTCA 60.338 52.381 0.00 0.00 42.98 3.02
651 654 1.519719 GCATCTTCGACCTGCTCCT 59.480 57.895 5.94 0.00 33.15 3.69
657 660 0.033504 TTCGACCTGCTCCTGTGTTC 59.966 55.000 0.00 0.00 0.00 3.18
725 728 7.268586 TGTTATTCTAGAGATCTTTGCACTCC 58.731 38.462 0.00 0.00 0.00 3.85
727 730 4.998671 TCTAGAGATCTTTGCACTCCTG 57.001 45.455 0.00 0.00 0.00 3.86
915 922 8.739972 GGGATCTGCCAATATAATTTCGTAATT 58.260 33.333 5.32 5.32 38.95 1.40
1014 1021 3.532155 GAGATGGCGGCGGAGAGT 61.532 66.667 9.78 0.00 0.00 3.24
1241 1248 1.492764 AACACCAGGTACCTATCCCG 58.507 55.000 15.80 1.05 0.00 5.14
1247 1255 2.732658 GTACCTATCCCGGCACCG 59.267 66.667 1.02 1.02 39.44 4.94
1282 1290 1.904990 GCGGCCTTCCTCTCCTCTTT 61.905 60.000 0.00 0.00 0.00 2.52
1283 1291 0.176910 CGGCCTTCCTCTCCTCTTTC 59.823 60.000 0.00 0.00 0.00 2.62
1284 1292 1.578897 GGCCTTCCTCTCCTCTTTCT 58.421 55.000 0.00 0.00 0.00 2.52
1325 1333 0.533491 TGGTTTCTGGATCCGTACGG 59.467 55.000 28.66 28.66 0.00 4.02
1380 1388 2.105128 CAGTCGGCGGATGAGACC 59.895 66.667 7.21 0.00 35.65 3.85
1522 1530 3.343617 TGTTTGGGGAATTGTCGATCTC 58.656 45.455 0.00 0.00 0.00 2.75
1601 1609 3.006003 AGAAGGAGAAGGTTTCTGTCGTC 59.994 47.826 0.00 0.00 40.87 4.20
1633 1653 1.205893 GAAGTCCGGATCTGAAGCAGT 59.794 52.381 7.81 0.00 32.61 4.40
1667 1687 4.655527 CCGTGTATGGATCGGCTC 57.344 61.111 0.00 0.00 37.90 4.70
1676 1696 1.762460 GGATCGGCTCAGGGAGGAA 60.762 63.158 0.00 0.00 0.00 3.36
1735 1755 3.882888 TCCTTGGTTTCATGTCTTGTCAC 59.117 43.478 0.00 0.00 0.00 3.67
1750 1770 6.313658 TGTCTTGTCACTGCATATGTGATTAC 59.686 38.462 10.12 7.30 44.74 1.89
1752 1772 4.119136 TGTCACTGCATATGTGATTACCG 58.881 43.478 10.12 0.00 44.74 4.02
1775 1795 6.367421 CGCTGAGTAGAGTATGATTAGTGTC 58.633 44.000 0.00 0.00 0.00 3.67
2060 2088 1.686587 GCACAGGGCCAAGTTTTAACT 59.313 47.619 6.18 0.00 37.42 2.24
2104 2132 5.828299 TTTGTTTCGTGAATTGTTCTCCT 57.172 34.783 0.00 0.00 0.00 3.69
2105 2133 4.811555 TGTTTCGTGAATTGTTCTCCTG 57.188 40.909 0.00 0.00 0.00 3.86
2107 2135 4.638421 TGTTTCGTGAATTGTTCTCCTGTT 59.362 37.500 0.00 0.00 0.00 3.16
2182 2210 6.463897 CCCATGTACTACCACGAATTAGGAAT 60.464 42.308 0.00 0.00 0.00 3.01
2259 2287 6.389906 ACTGTACTTGGCAATGCTTATTTTC 58.610 36.000 4.82 0.00 0.00 2.29
2341 2376 6.037610 GTGACAAAGATTAGCATCCCTGTTAG 59.962 42.308 0.00 0.00 29.00 2.34
2404 2445 4.511826 GTGTACTTCACTTAGTGCTTTGCT 59.488 41.667 7.61 0.00 43.13 3.91
2460 2501 6.205658 GCCCTGTAATTCAGAGATCAAATACC 59.794 42.308 0.00 0.00 46.27 2.73
2461 2502 6.425114 CCCTGTAATTCAGAGATCAAATACCG 59.575 42.308 0.00 0.00 46.27 4.02
2462 2503 6.425114 CCTGTAATTCAGAGATCAAATACCGG 59.575 42.308 0.00 0.00 46.27 5.28
2495 2536 3.264193 TGATCCTCATAACACTGTTGCCT 59.736 43.478 4.57 0.00 0.00 4.75
2508 2549 3.629398 ACTGTTGCCTCTTTCTTTCACTG 59.371 43.478 0.00 0.00 0.00 3.66
2592 2633 3.241067 TGCCGTCAGTTAATCAGGTAC 57.759 47.619 0.00 0.00 0.00 3.34
2597 2638 3.924686 CGTCAGTTAATCAGGTACGCTTT 59.075 43.478 0.00 0.00 0.00 3.51
2623 2665 4.997395 TCTTCAGATTTTGCACTACTCCAC 59.003 41.667 0.00 0.00 0.00 4.02
2656 2698 7.791029 AGAAAAACAAACATGGGTTCAACTAT 58.209 30.769 0.00 0.00 35.82 2.12
2702 2744 4.627035 TCAAGATCTTGCACTATCAACACG 59.373 41.667 27.45 2.29 40.24 4.49
2744 2786 5.068723 CCAACTCCTATTTCCTAGCGAAGTA 59.931 44.000 0.00 0.00 0.00 2.24
2783 2825 1.203441 TGGCCTCATCCTCAGCAAGT 61.203 55.000 3.32 0.00 0.00 3.16
2829 2871 4.455533 TGCCAAGAAGCAACAACTATACAG 59.544 41.667 0.00 0.00 40.56 2.74
2859 2901 0.396435 TAGGAACACCAGTGGCAGTG 59.604 55.000 15.49 15.49 39.93 3.66
2864 2906 3.492353 ACCAGTGGCAGTGGCAGT 61.492 61.111 35.57 20.93 42.53 4.40
2865 2907 2.146724 ACCAGTGGCAGTGGCAGTA 61.147 57.895 35.57 0.00 42.53 2.74
2866 2908 1.376424 CCAGTGGCAGTGGCAGTAG 60.376 63.158 27.35 15.56 39.77 2.57
2867 2909 1.376424 CAGTGGCAGTGGCAGTAGG 60.376 63.158 25.07 11.56 39.77 3.18
2868 2910 1.536418 AGTGGCAGTGGCAGTAGGA 60.536 57.895 24.43 0.00 39.98 2.94
2869 2911 1.078848 GTGGCAGTGGCAGTAGGAG 60.079 63.158 21.25 0.00 43.71 3.69
2875 2917 1.209019 CAGTGGCAGTAGGAGCTTCAT 59.791 52.381 0.00 0.00 0.00 2.57
2948 2990 1.742761 GCAGCAGAAGAAGTATGCCA 58.257 50.000 0.00 0.00 40.89 4.92
2950 2992 2.286872 CAGCAGAAGAAGTATGCCAGG 58.713 52.381 0.00 0.00 40.89 4.45
3020 3062 0.516439 GCACAAGAAGCAGAGACAGC 59.484 55.000 0.00 0.00 0.00 4.40
3035 3077 2.113986 AGCGGCAGAGGCTTTGTT 59.886 55.556 6.91 0.00 37.50 2.83
3044 3086 4.084888 GGCTTTGTTCGGGCGTCG 62.085 66.667 0.00 0.00 40.90 5.12
3045 3087 4.736631 GCTTTGTTCGGGCGTCGC 62.737 66.667 9.22 9.22 39.05 5.19
3089 3131 1.153086 GCGGTCAGGCCAATCTGAT 60.153 57.895 5.01 0.00 44.43 2.90
3101 3143 2.350804 CCAATCTGATGACGCTTCACTG 59.649 50.000 0.00 0.00 33.38 3.66
3321 3570 7.423844 TCTTTCTCTGGAAGAATGTAGCATA 57.576 36.000 0.00 0.00 46.34 3.14
3322 3571 7.851228 TCTTTCTCTGGAAGAATGTAGCATAA 58.149 34.615 0.00 0.00 46.34 1.90
3323 3572 7.984050 TCTTTCTCTGGAAGAATGTAGCATAAG 59.016 37.037 0.00 0.00 46.34 1.73
3324 3573 6.798427 TCTCTGGAAGAATGTAGCATAAGT 57.202 37.500 0.00 0.00 46.34 2.24
3325 3574 7.898014 TCTCTGGAAGAATGTAGCATAAGTA 57.102 36.000 0.00 0.00 46.34 2.24
3326 3575 7.717568 TCTCTGGAAGAATGTAGCATAAGTAC 58.282 38.462 0.00 0.00 46.34 2.73
3327 3576 6.817184 TCTGGAAGAATGTAGCATAAGTACC 58.183 40.000 0.00 0.00 42.31 3.34
3328 3577 5.597806 TGGAAGAATGTAGCATAAGTACCG 58.402 41.667 0.00 0.00 0.00 4.02
3329 3578 5.128171 TGGAAGAATGTAGCATAAGTACCGT 59.872 40.000 0.00 0.00 0.00 4.83
3342 3591 3.695830 AGTACCGTGGTGTGATCAATT 57.304 42.857 0.00 0.00 0.00 2.32
3371 3620 3.929417 TGTGTGAAAGTAAAACGACGG 57.071 42.857 0.00 0.00 0.00 4.79
3494 3743 3.947910 TCTCGGTTCGGTAGTTTGATT 57.052 42.857 0.00 0.00 0.00 2.57
3496 3745 5.587388 TCTCGGTTCGGTAGTTTGATTAT 57.413 39.130 0.00 0.00 0.00 1.28
3503 3752 8.131100 CGGTTCGGTAGTTTGATTATAGAACTA 58.869 37.037 4.82 0.00 36.62 2.24
3511 3760 8.252624 AGTTTGATTATAGAACTACTCCCTCC 57.747 38.462 0.00 0.00 32.22 4.30
3512 3761 6.896021 TTGATTATAGAACTACTCCCTCCG 57.104 41.667 0.00 0.00 0.00 4.63
3513 3762 5.950023 TGATTATAGAACTACTCCCTCCGT 58.050 41.667 0.00 0.00 0.00 4.69
3514 3763 6.002704 TGATTATAGAACTACTCCCTCCGTC 58.997 44.000 0.00 0.00 0.00 4.79
3515 3764 2.725221 TAGAACTACTCCCTCCGTCC 57.275 55.000 0.00 0.00 0.00 4.79
3516 3765 0.033306 AGAACTACTCCCTCCGTCCC 60.033 60.000 0.00 0.00 0.00 4.46
3517 3766 0.324091 GAACTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
3518 3767 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
3519 3768 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3520 3769 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
3521 3770 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
3522 3771 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3523 3772 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3524 3773 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3525 3774 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3526 3775 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3527 3776 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3528 3777 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3529 3778 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3530 3779 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3531 3780 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3532 3781 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3533 3782 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3534 3783 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3535 3784 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3536 3785 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3537 3786 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3538 3787 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3539 3788 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3540 3789 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3548 3797 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3549 3798 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3550 3799 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3551 3800 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3552 3801 8.784994 GTCTTAGATTTGTCTAGATACGGATGA 58.215 37.037 0.00 0.00 0.00 2.92
3553 3802 8.784994 TCTTAGATTTGTCTAGATACGGATGAC 58.215 37.037 0.00 0.00 0.00 3.06
3554 3803 6.961360 AGATTTGTCTAGATACGGATGACA 57.039 37.500 0.00 0.00 36.10 3.58
3555 3804 7.348080 AGATTTGTCTAGATACGGATGACAA 57.652 36.000 7.70 7.70 43.17 3.18
3556 3805 7.429633 AGATTTGTCTAGATACGGATGACAAG 58.570 38.462 10.79 0.00 44.72 3.16
3557 3806 6.769134 TTTGTCTAGATACGGATGACAAGA 57.231 37.500 10.79 2.71 44.72 3.02
3558 3807 6.769134 TTGTCTAGATACGGATGACAAGAA 57.231 37.500 7.70 0.00 41.02 2.52
3559 3808 6.961360 TGTCTAGATACGGATGACAAGAAT 57.039 37.500 0.00 0.00 35.15 2.40
3560 3809 7.348080 TGTCTAGATACGGATGACAAGAATT 57.652 36.000 0.00 0.00 35.15 2.17
3561 3810 7.782049 TGTCTAGATACGGATGACAAGAATTT 58.218 34.615 0.00 0.00 35.15 1.82
3562 3811 8.258007 TGTCTAGATACGGATGACAAGAATTTT 58.742 33.333 0.00 0.00 35.15 1.82
3563 3812 9.099454 GTCTAGATACGGATGACAAGAATTTTT 57.901 33.333 0.00 0.00 0.00 1.94
3590 3839 6.037940 GGACGGAGGGAGTATTTTACATTTTC 59.962 42.308 0.00 0.00 0.00 2.29
3668 3917 2.824689 TTCCATCAGCCAAAGCCATA 57.175 45.000 0.00 0.00 41.25 2.74
3787 4036 3.992643 TGCCATCAACAAAATTCCACTG 58.007 40.909 0.00 0.00 0.00 3.66
3903 4163 8.977412 TCTCTATGTATGTTGTTATCTGTTCCA 58.023 33.333 0.00 0.00 0.00 3.53
3920 4180 7.312154 TCTGTTCCATAAATTGATCCAAAACG 58.688 34.615 0.00 0.00 0.00 3.60
3922 4182 7.437748 TGTTCCATAAATTGATCCAAAACGTT 58.562 30.769 0.00 0.00 0.00 3.99
4049 4338 4.324424 AACACATGTTGCAAGCGC 57.676 50.000 0.00 0.00 36.80 5.92
4050 4339 1.658102 AACACATGTTGCAAGCGCG 60.658 52.632 0.00 0.00 42.97 6.86
4051 4340 3.463690 CACATGTTGCAAGCGCGC 61.464 61.111 26.66 26.66 42.97 6.86
4052 4341 3.963647 ACATGTTGCAAGCGCGCA 61.964 55.556 35.10 11.28 42.97 6.09
4053 4342 2.505337 CATGTTGCAAGCGCGCAT 60.505 55.556 35.10 20.88 42.62 4.73
4054 4343 2.202518 ATGTTGCAAGCGCGCATC 60.203 55.556 35.10 21.12 42.62 3.91
4055 4344 2.693762 ATGTTGCAAGCGCGCATCT 61.694 52.632 35.10 14.71 42.62 2.90
4056 4345 2.575262 GTTGCAAGCGCGCATCTC 60.575 61.111 35.10 18.87 42.62 2.75
4057 4346 3.803082 TTGCAAGCGCGCATCTCC 61.803 61.111 35.10 16.40 42.62 3.71
4059 4348 3.580193 GCAAGCGCGCATCTCCAT 61.580 61.111 35.10 7.55 0.00 3.41
4060 4349 2.630317 CAAGCGCGCATCTCCATC 59.370 61.111 35.10 0.00 0.00 3.51
4061 4350 1.886313 CAAGCGCGCATCTCCATCT 60.886 57.895 35.10 5.73 0.00 2.90
4062 4351 1.593750 AAGCGCGCATCTCCATCTC 60.594 57.895 35.10 0.00 0.00 2.75
4063 4352 2.279717 GCGCGCATCTCCATCTCA 60.280 61.111 29.10 0.00 0.00 3.27
4064 4353 1.884464 GCGCGCATCTCCATCTCAA 60.884 57.895 29.10 0.00 0.00 3.02
4065 4354 1.431488 GCGCGCATCTCCATCTCAAA 61.431 55.000 29.10 0.00 0.00 2.69
4066 4355 1.009078 CGCGCATCTCCATCTCAAAA 58.991 50.000 8.75 0.00 0.00 2.44
4067 4356 1.398041 CGCGCATCTCCATCTCAAAAA 59.602 47.619 8.75 0.00 0.00 1.94
4220 4509 1.081556 TCACGTCACGCCATATGTGC 61.082 55.000 0.00 4.17 37.26 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 5.950544 TTCCTTTGACTAGCAGCCTAATA 57.049 39.130 0.00 0.00 0.00 0.98
90 91 4.389077 GGACGAATTTTGTCAGATTCTCGT 59.611 41.667 16.72 0.00 38.10 4.18
186 188 3.520290 TGCATCTCGATTCTACGGTTT 57.480 42.857 0.00 0.00 0.00 3.27
195 197 4.393062 ACACGAAAAAGATGCATCTCGATT 59.607 37.500 30.98 24.06 35.76 3.34
268 270 8.956533 AAGCTTCTATGTAATCTCCTTTCTTC 57.043 34.615 0.00 0.00 0.00 2.87
273 275 6.550108 TCGGTAAGCTTCTATGTAATCTCCTT 59.450 38.462 0.00 0.00 0.00 3.36
283 285 3.066342 TCGACCTTCGGTAAGCTTCTATG 59.934 47.826 0.00 0.00 40.88 2.23
285 287 2.715046 TCGACCTTCGGTAAGCTTCTA 58.285 47.619 0.00 0.00 40.88 2.10
303 305 4.143179 GGTGATTACGTGAGGTCTTTTTCG 60.143 45.833 0.00 0.00 0.00 3.46
329 331 1.674980 GTGGAGACTCGAGGGACGT 60.675 63.158 18.41 0.00 43.13 4.34
331 333 2.484558 GAGTGGAGACTCGAGGGAC 58.515 63.158 18.41 7.86 39.44 4.46
338 340 0.389166 CCTTGCACGAGTGGAGACTC 60.389 60.000 5.32 0.00 44.70 3.36
480 483 5.221244 GGAAGTAAGAAGCATGTTTGGTTGT 60.221 40.000 0.00 0.00 43.35 3.32
491 494 1.270625 CCACACGGGAAGTAAGAAGCA 60.271 52.381 0.00 0.00 40.01 3.91
525 528 2.126502 GTTTGGTTGCCCGCATCG 60.127 61.111 0.00 0.00 0.00 3.84
566 569 0.251341 ACAGATTGTCCAACCAGCCC 60.251 55.000 0.00 0.00 0.00 5.19
607 610 2.222886 CGTCATCGTCCCTCTATCACT 58.777 52.381 0.00 0.00 0.00 3.41
645 648 0.240145 CGACTACGAACACAGGAGCA 59.760 55.000 0.00 0.00 42.66 4.26
651 654 0.936600 TGACGACGACTACGAACACA 59.063 50.000 0.00 0.00 42.66 3.72
657 660 0.236711 ACCACTTGACGACGACTACG 59.763 55.000 0.00 0.00 45.75 3.51
915 922 4.373116 GAGAGGCAACGGTCGGCA 62.373 66.667 0.00 0.00 46.39 5.69
1014 1021 3.521605 CGTGGTGCGGATCTAGGA 58.478 61.111 0.00 0.00 36.85 2.94
1275 1283 8.049721 AGACAAGAAAGAAAGAAAGAAAGAGGA 58.950 33.333 0.00 0.00 0.00 3.71
1282 1290 7.362920 CCAACCAAGACAAGAAAGAAAGAAAGA 60.363 37.037 0.00 0.00 0.00 2.52
1283 1291 6.753744 CCAACCAAGACAAGAAAGAAAGAAAG 59.246 38.462 0.00 0.00 0.00 2.62
1284 1292 6.210584 ACCAACCAAGACAAGAAAGAAAGAAA 59.789 34.615 0.00 0.00 0.00 2.52
1325 1333 1.069204 TCCTGCAGGACAGCGATAATC 59.931 52.381 32.00 0.00 45.78 1.75
1522 1530 7.393551 ACTGCAAAGATTTCAAATTAACACG 57.606 32.000 0.00 0.00 0.00 4.49
1552 1560 1.084370 CGCCTGCTTTACCTCCTTCG 61.084 60.000 0.00 0.00 0.00 3.79
1601 1609 0.173708 CGGACTTCTCCTTTCCCTCG 59.826 60.000 0.00 0.00 33.79 4.63
1667 1687 0.671781 CGCAAGACAGTTCCTCCCTG 60.672 60.000 0.00 0.00 43.02 4.45
1676 1696 0.320771 CCCTTACAGCGCAAGACAGT 60.321 55.000 11.47 0.20 43.02 3.55
1735 1755 3.392882 TCAGCGGTAATCACATATGCAG 58.607 45.455 1.58 0.00 0.00 4.41
1750 1770 5.239744 ACACTAATCATACTCTACTCAGCGG 59.760 44.000 0.00 0.00 0.00 5.52
1752 1772 7.227711 TCAGACACTAATCATACTCTACTCAGC 59.772 40.741 0.00 0.00 0.00 4.26
1800 1820 3.181462 TGGTACTTGGCTGATAGCAGATG 60.181 47.826 13.26 0.44 44.75 2.90
2107 2135 6.154363 ACACACTGAATCTTGGGAAAGAAAAA 59.846 34.615 0.00 0.00 31.77 1.94
2112 2140 4.136796 TCACACACTGAATCTTGGGAAAG 58.863 43.478 0.00 0.00 0.00 2.62
2114 2142 3.855255 TCACACACTGAATCTTGGGAA 57.145 42.857 0.00 0.00 0.00 3.97
2127 2155 4.585879 AGGGGTTTATACACATCACACAC 58.414 43.478 0.00 0.00 0.00 3.82
2182 2210 7.846644 TCTCGTAAAGTAACCAGAAACAAAA 57.153 32.000 0.00 0.00 0.00 2.44
2429 2470 5.912149 TCTCTGAATTACAGGGCCAATAT 57.088 39.130 6.18 0.00 45.96 1.28
2460 2501 3.208594 TGAGGATCAAGAATTGCATCCG 58.791 45.455 0.00 0.00 45.97 4.18
2495 2536 3.845781 AGCTGTCCAGTGAAAGAAAGA 57.154 42.857 0.00 0.00 0.00 2.52
2508 2549 1.730064 CATTGCATGCAAAAGCTGTCC 59.270 47.619 34.84 0.00 39.55 4.02
2592 2633 4.322804 GTGCAAAATCTGAAGATCAAAGCG 59.677 41.667 0.00 0.00 32.75 4.68
2597 2638 5.877012 GGAGTAGTGCAAAATCTGAAGATCA 59.123 40.000 0.00 0.00 32.75 2.92
2623 2665 7.610865 ACCCATGTTTGTTTTTCTACCATATG 58.389 34.615 0.00 0.00 0.00 1.78
2667 2709 5.353400 TGCAAGATCTTGAATTACTGCAGAG 59.647 40.000 34.43 5.24 42.93 3.35
2702 2744 2.304761 TTGGATGGTGTTCCAGAGTACC 59.695 50.000 0.00 0.00 46.22 3.34
2744 2786 1.756561 GGAGCTCTTCCTCGCCTCT 60.757 63.158 14.64 0.00 43.16 3.69
2783 2825 2.742053 GCTTTGCTTCACATCGTCCTTA 59.258 45.455 0.00 0.00 0.00 2.69
2829 2871 3.153919 TGGTGTTCCTAATGCCAACTTC 58.846 45.455 0.00 0.00 34.23 3.01
2859 2901 1.208052 TGTGATGAAGCTCCTACTGCC 59.792 52.381 0.00 0.00 0.00 4.85
2864 2906 2.497675 GTCCTGTGTGATGAAGCTCCTA 59.502 50.000 0.00 0.00 0.00 2.94
2865 2907 1.277557 GTCCTGTGTGATGAAGCTCCT 59.722 52.381 0.00 0.00 0.00 3.69
2866 2908 1.277557 AGTCCTGTGTGATGAAGCTCC 59.722 52.381 0.00 0.00 0.00 4.70
2867 2909 2.758736 AGTCCTGTGTGATGAAGCTC 57.241 50.000 0.00 0.00 0.00 4.09
2868 2910 2.899900 TGTAGTCCTGTGTGATGAAGCT 59.100 45.455 0.00 0.00 0.00 3.74
2869 2911 2.996621 GTGTAGTCCTGTGTGATGAAGC 59.003 50.000 0.00 0.00 0.00 3.86
2875 2917 5.886474 CCTATTCTAGTGTAGTCCTGTGTGA 59.114 44.000 0.00 0.00 0.00 3.58
2931 2973 1.407989 GCCTGGCATACTTCTTCTGCT 60.408 52.381 15.17 0.00 36.18 4.24
2948 2990 1.384191 GTTCATGGTTCCTGGGCCT 59.616 57.895 4.53 0.00 0.00 5.19
2950 2992 1.250840 GGTGTTCATGGTTCCTGGGC 61.251 60.000 0.00 0.00 0.00 5.36
3020 3062 2.680913 CCGAACAAAGCCTCTGCCG 61.681 63.158 0.00 0.00 38.69 5.69
3089 3131 0.320050 TGTATGCCAGTGAAGCGTCA 59.680 50.000 0.00 0.00 0.00 4.35
3101 3143 1.660560 CCTGCTGCAACCTGTATGCC 61.661 60.000 3.02 0.00 43.16 4.40
3321 3570 3.695830 ATTGATCACACCACGGTACTT 57.304 42.857 0.00 0.00 0.00 2.24
3322 3571 3.695830 AATTGATCACACCACGGTACT 57.304 42.857 0.00 0.00 0.00 2.73
3323 3572 4.501071 AGTAATTGATCACACCACGGTAC 58.499 43.478 0.00 0.00 0.00 3.34
3324 3573 4.811969 AGTAATTGATCACACCACGGTA 57.188 40.909 0.00 0.00 0.00 4.02
3325 3574 3.695830 AGTAATTGATCACACCACGGT 57.304 42.857 0.00 0.00 0.00 4.83
3326 3575 3.751175 ACAAGTAATTGATCACACCACGG 59.249 43.478 10.35 0.00 0.00 4.94
3327 3576 6.662414 ATACAAGTAATTGATCACACCACG 57.338 37.500 10.35 0.00 0.00 4.94
3328 3577 7.750458 CACAATACAAGTAATTGATCACACCAC 59.250 37.037 10.35 0.00 0.00 4.16
3329 3578 7.446931 ACACAATACAAGTAATTGATCACACCA 59.553 33.333 10.35 0.00 0.00 4.17
3342 3591 9.096160 TCGTTTTACTTTCACACAATACAAGTA 57.904 29.630 0.00 0.00 0.00 2.24
3371 3620 0.819582 AACACATATGGCTGGCTTGC 59.180 50.000 7.80 0.00 0.00 4.01
3429 3678 0.679505 TGCAGGGCTATACGACCATC 59.320 55.000 0.00 0.00 46.64 3.51
3494 3743 3.073650 GGGACGGAGGGAGTAGTTCTATA 59.926 52.174 0.00 0.00 0.00 1.31
3496 3745 1.213926 GGGACGGAGGGAGTAGTTCTA 59.786 57.143 0.00 0.00 0.00 2.10
3503 3752 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3504 3753 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3505 3754 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3506 3755 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3507 3756 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3508 3757 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3509 3758 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3510 3759 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3511 3760 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3512 3761 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3513 3762 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3514 3763 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3522 3771 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3523 3772 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3524 3773 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3525 3774 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3526 3775 8.784994 TCATCCGTATCTAGACAAATCTAAGAC 58.215 37.037 0.00 0.00 36.98 3.01
3527 3776 8.784994 GTCATCCGTATCTAGACAAATCTAAGA 58.215 37.037 0.00 0.00 36.98 2.10
3528 3777 8.568794 TGTCATCCGTATCTAGACAAATCTAAG 58.431 37.037 0.00 0.00 36.98 2.18
3529 3778 8.459911 TGTCATCCGTATCTAGACAAATCTAA 57.540 34.615 0.00 0.00 36.98 2.10
3530 3779 8.459911 TTGTCATCCGTATCTAGACAAATCTA 57.540 34.615 0.00 0.00 43.71 1.98
3531 3780 6.961360 TGTCATCCGTATCTAGACAAATCT 57.039 37.500 0.00 0.00 36.39 2.40
3532 3781 7.426410 TCTTGTCATCCGTATCTAGACAAATC 58.574 38.462 0.00 0.00 45.28 2.17
3533 3782 7.348080 TCTTGTCATCCGTATCTAGACAAAT 57.652 36.000 0.00 0.00 45.28 2.32
3534 3783 6.769134 TCTTGTCATCCGTATCTAGACAAA 57.231 37.500 0.00 0.00 45.28 2.83
3535 3784 6.769134 TTCTTGTCATCCGTATCTAGACAA 57.231 37.500 0.00 0.00 44.25 3.18
3536 3785 6.961360 ATTCTTGTCATCCGTATCTAGACA 57.039 37.500 0.00 0.00 37.43 3.41
3537 3786 8.649973 AAAATTCTTGTCATCCGTATCTAGAC 57.350 34.615 0.00 0.00 0.00 2.59
3560 3809 4.376225 AAATACTCCCTCCGTCCAAAAA 57.624 40.909 0.00 0.00 0.00 1.94
3561 3810 4.376225 AAAATACTCCCTCCGTCCAAAA 57.624 40.909 0.00 0.00 0.00 2.44
3562 3811 4.286549 TGTAAAATACTCCCTCCGTCCAAA 59.713 41.667 0.00 0.00 0.00 3.28
3563 3812 3.839490 TGTAAAATACTCCCTCCGTCCAA 59.161 43.478 0.00 0.00 0.00 3.53
3564 3813 3.443052 TGTAAAATACTCCCTCCGTCCA 58.557 45.455 0.00 0.00 0.00 4.02
3565 3814 4.684484 ATGTAAAATACTCCCTCCGTCC 57.316 45.455 0.00 0.00 0.00 4.79
3566 3815 6.238022 CGAAAATGTAAAATACTCCCTCCGTC 60.238 42.308 0.00 0.00 0.00 4.79
3567 3816 5.583457 CGAAAATGTAAAATACTCCCTCCGT 59.417 40.000 0.00 0.00 0.00 4.69
3568 3817 5.007332 CCGAAAATGTAAAATACTCCCTCCG 59.993 44.000 0.00 0.00 0.00 4.63
3569 3818 6.117488 TCCGAAAATGTAAAATACTCCCTCC 58.883 40.000 0.00 0.00 0.00 4.30
3570 3819 7.619964 TTCCGAAAATGTAAAATACTCCCTC 57.380 36.000 0.00 0.00 0.00 4.30
3571 3820 8.589701 AATTCCGAAAATGTAAAATACTCCCT 57.410 30.769 0.00 0.00 0.00 4.20
3687 3936 7.561722 ACACACATAGTCAGATGTAAGGAGTAT 59.438 37.037 0.00 0.00 37.99 2.12
3708 3957 2.657237 CCGAGACCCAGGACACAC 59.343 66.667 0.00 0.00 0.00 3.82
3768 4017 7.093988 TGGTATACAGTGGAATTTTGTTGATGG 60.094 37.037 5.01 0.00 0.00 3.51
3787 4036 7.611213 ACAGTAGCTTTGAACATTGGTATAC 57.389 36.000 0.00 0.00 0.00 1.47
3903 4163 9.927668 ATTTCTCAACGTTTTGGATCAATTTAT 57.072 25.926 0.00 0.00 33.06 1.40
3912 4172 4.517453 CCCTGTATTTCTCAACGTTTTGGA 59.483 41.667 0.00 0.00 33.06 3.53
3920 4180 3.073274 AGGCACCCTGTATTTCTCAAC 57.927 47.619 0.00 0.00 29.57 3.18
3922 4182 3.073798 TCAAAGGCACCCTGTATTTCTCA 59.926 43.478 0.00 0.00 32.13 3.27
4042 4331 3.518293 GATGGAGATGCGCGCTTGC 62.518 63.158 33.29 21.94 0.00 4.01
4043 4332 1.829349 GAGATGGAGATGCGCGCTTG 61.829 60.000 33.29 0.00 0.00 4.01
4044 4333 1.593750 GAGATGGAGATGCGCGCTT 60.594 57.895 33.29 27.00 0.00 4.68
4045 4334 2.028778 GAGATGGAGATGCGCGCT 59.971 61.111 33.29 17.95 0.00 5.92
4046 4335 1.431488 TTTGAGATGGAGATGCGCGC 61.431 55.000 27.26 27.26 0.00 6.86
4047 4336 1.009078 TTTTGAGATGGAGATGCGCG 58.991 50.000 0.00 0.00 0.00 6.86
4081 4370 9.405587 GCTTGTTATTGTTTGTATAACATGTGT 57.594 29.630 0.00 0.00 43.89 3.72
4082 4371 9.404348 TGCTTGTTATTGTTTGTATAACATGTG 57.596 29.630 0.00 9.44 43.89 3.21
4083 4372 9.624697 CTGCTTGTTATTGTTTGTATAACATGT 57.375 29.630 16.30 0.00 43.89 3.21
4084 4373 9.624697 ACTGCTTGTTATTGTTTGTATAACATG 57.375 29.630 8.69 11.18 43.89 3.21
4085 4374 9.624697 CACTGCTTGTTATTGTTTGTATAACAT 57.375 29.630 8.69 0.00 43.89 2.71
4086 4375 8.079203 CCACTGCTTGTTATTGTTTGTATAACA 58.921 33.333 0.00 0.00 43.21 2.41
4087 4376 7.061789 GCCACTGCTTGTTATTGTTTGTATAAC 59.938 37.037 0.00 0.00 35.71 1.89
4088 4377 7.087639 GCCACTGCTTGTTATTGTTTGTATAA 58.912 34.615 0.00 0.00 33.53 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.