Multiple sequence alignment - TraesCS6B01G332100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G332100 chr6B 100.000 6494 0 0 1 6494 583450820 583444327 0.000000e+00 11993.0
1 TraesCS6B01G332100 chr6B 92.655 177 8 4 4662 4838 36133494 36133665 3.890000e-62 250.0
2 TraesCS6B01G332100 chr6B 93.023 172 10 2 4674 4845 132353415 132353584 3.890000e-62 250.0
3 TraesCS6B01G332100 chr6B 98.750 80 1 0 2026 2105 583448722 583448643 6.790000e-30 143.0
4 TraesCS6B01G332100 chr6B 98.750 80 1 0 2099 2178 583448795 583448716 6.790000e-30 143.0
5 TraesCS6B01G332100 chr6B 100.000 50 0 0 2920 2969 422968809 422968760 6.930000e-15 93.5
6 TraesCS6B01G332100 chr6B 100.000 50 0 0 2920 2969 587089135 587089184 6.930000e-15 93.5
7 TraesCS6B01G332100 chr6D 91.078 3508 197 55 3050 6494 389702305 389698851 0.000000e+00 4638.0
8 TraesCS6B01G332100 chr6D 90.011 1772 113 36 348 2105 389704742 389703021 0.000000e+00 2233.0
9 TraesCS6B01G332100 chr6D 95.942 616 17 3 2100 2714 389703098 389702490 0.000000e+00 992.0
10 TraesCS6B01G332100 chr6D 90.000 190 12 7 4659 4843 162299577 162299390 8.420000e-59 239.0
11 TraesCS6B01G332100 chr6D 96.429 84 3 0 2967 3050 389702472 389702389 8.780000e-29 139.0
12 TraesCS6B01G332100 chr6A 94.798 1711 73 7 2967 4676 536216185 536214490 0.000000e+00 2652.0
13 TraesCS6B01G332100 chr6A 87.658 2131 178 53 18 2105 536218828 536216740 0.000000e+00 2399.0
14 TraesCS6B01G332100 chr6A 87.840 1727 106 35 4840 6494 536214468 536212774 0.000000e+00 1930.0
15 TraesCS6B01G332100 chr6A 98.052 616 11 1 2100 2714 536216818 536216203 0.000000e+00 1070.0
16 TraesCS6B01G332100 chr6A 97.129 209 6 0 2693 2901 540125977 540125769 2.880000e-93 353.0
17 TraesCS6B01G332100 chr6A 100.000 50 0 0 2920 2969 309812594 309812643 6.930000e-15 93.5
18 TraesCS6B01G332100 chr2A 98.477 197 3 0 2700 2896 463183646 463183842 1.340000e-91 348.0
19 TraesCS6B01G332100 chr2A 97.525 202 4 1 2697 2898 404938681 404938881 1.730000e-90 344.0
20 TraesCS6B01G332100 chr2A 96.172 209 5 3 2687 2892 50919993 50920201 8.070000e-89 339.0
21 TraesCS6B01G332100 chr2A 93.491 169 8 3 4670 4838 184561150 184561315 1.400000e-61 248.0
22 TraesCS6B01G332100 chr2A 82.775 209 27 9 4674 4878 107385616 107385819 1.860000e-40 178.0
23 TraesCS6B01G332100 chr2A 100.000 50 0 0 2920 2969 214057289 214057338 6.930000e-15 93.5
24 TraesCS6B01G332100 chr2A 100.000 50 0 0 2920 2969 356949973 356950022 6.930000e-15 93.5
25 TraesCS6B01G332100 chr2A 100.000 50 0 0 2920 2969 360744370 360744321 6.930000e-15 93.5
26 TraesCS6B01G332100 chr1A 98.000 200 2 2 2701 2898 534541862 534541663 4.820000e-91 346.0
27 TraesCS6B01G332100 chr7B 97.990 199 3 1 2700 2898 198242147 198242344 1.730000e-90 344.0
28 TraesCS6B01G332100 chr4A 100.000 185 0 0 2714 2898 338745894 338745710 6.240000e-90 342.0
29 TraesCS6B01G332100 chr4A 96.618 207 4 3 2695 2898 747529 747323 2.240000e-89 340.0
30 TraesCS6B01G332100 chr1B 94.977 219 5 5 2698 2912 671975674 671975458 8.070000e-89 339.0
31 TraesCS6B01G332100 chr4B 94.611 167 7 2 4675 4841 606916924 606916760 2.320000e-64 257.0
32 TraesCS6B01G332100 chr7A 92.655 177 10 3 4670 4846 494786825 494786998 1.080000e-62 252.0
33 TraesCS6B01G332100 chr7A 100.000 50 0 0 2920 2969 701676379 701676330 6.930000e-15 93.5
34 TraesCS6B01G332100 chr4D 94.012 167 8 2 4675 4841 479687421 479687257 1.080000e-62 252.0
35 TraesCS6B01G332100 chr4D 94.828 58 2 1 2920 2976 371127148 371127091 8.970000e-14 89.8
36 TraesCS6B01G332100 chr3D 94.012 167 8 2 4675 4841 87926161 87925997 1.080000e-62 252.0
37 TraesCS6B01G332100 chr3D 100.000 30 0 0 4047 4076 28240601 28240572 1.000000e-03 56.5
38 TraesCS6B01G332100 chr3B 89.908 109 11 0 1103 1211 19049865 19049973 2.440000e-29 141.0
39 TraesCS6B01G332100 chr3B 78.788 132 19 6 4045 4172 263274568 263274694 5.400000e-11 80.5
40 TraesCS6B01G332100 chr7D 96.250 80 3 0 1132 1211 553014429 553014350 1.470000e-26 132.0
41 TraesCS6B01G332100 chr7D 88.172 93 11 0 1119 1211 553013334 553013242 1.910000e-20 111.0
42 TraesCS6B01G332100 chr7D 91.379 58 4 1 4078 4134 128131136 128131193 1.940000e-10 78.7
43 TraesCS6B01G332100 chr5D 100.000 50 0 0 2920 2969 317284566 317284517 6.930000e-15 93.5
44 TraesCS6B01G332100 chr3A 100.000 30 0 0 4047 4076 38202396 38202367 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G332100 chr6B 583444327 583450820 6493 True 4093.00 11993 99.166667 1 6494 3 chr6B.!!$R2 6493
1 TraesCS6B01G332100 chr6D 389698851 389704742 5891 True 2000.50 4638 93.365000 348 6494 4 chr6D.!!$R2 6146
2 TraesCS6B01G332100 chr6A 536212774 536218828 6054 True 2012.75 2652 92.087000 18 6494 4 chr6A.!!$R2 6476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 199 0.173255 CGATTACCGGTTACACCCGT 59.827 55.0 15.04 0.0 46.66 5.28 F
539 542 0.179092 GCCGGTTAGTCCTTATGCGT 60.179 55.0 1.90 0.0 0.00 5.24 F
1483 1516 0.457509 TTGCTTTGTGGCGTGTGTTG 60.458 50.0 0.00 0.0 34.52 3.33 F
2723 2772 0.251341 TTTTCTGCTGAAGGGGAGCC 60.251 55.0 6.13 0.0 35.43 4.70 F
2933 2982 0.032416 TGTGTCCTCTAGCCTACCCC 60.032 60.0 0.00 0.0 0.00 4.95 F
4075 4208 0.179081 GGCAGTAAGGCGACCTAAGG 60.179 60.0 0.00 0.0 31.13 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1319 1350 0.250234 TGAGGAATGCAGGAAGACCG 59.750 55.0 0.00 0.00 41.83 4.79 R
2075 2123 0.690762 TCTCCAAGTACCAGTTGGGC 59.309 55.0 11.34 0.00 46.31 5.36 R
2744 2793 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.00 44.78 4.85 R
4162 4295 0.902531 CCCTCCTTTGGACGCTTAGA 59.097 55.0 0.00 0.00 0.00 2.10 R
4258 4392 2.770164 TAACTGGAGCTGGCTCTTTC 57.230 50.0 19.92 6.49 42.38 2.62 R
5570 5727 0.034337 ACGCTTAAACTCGGGAAGCA 59.966 50.0 7.84 0.00 44.71 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 3.806316 ACCGCTTTGTTCATTTCTACG 57.194 42.857 0.00 0.00 0.00 3.51
101 102 4.951254 TGTTCATTTCTACGTGGAACTCA 58.049 39.130 14.46 0.00 38.82 3.41
107 108 7.581476 TCATTTCTACGTGGAACTCATTTTTC 58.419 34.615 14.46 0.00 31.75 2.29
137 139 7.712205 TCCGTAAGATATTATGCATCCATGATG 59.288 37.037 0.19 0.00 40.83 3.07
150 152 8.102800 TGCATCCATGATGAAGTGTAATATTC 57.897 34.615 8.21 0.00 42.09 1.75
151 153 7.175467 TGCATCCATGATGAAGTGTAATATTCC 59.825 37.037 8.21 0.00 42.09 3.01
152 154 7.362401 GCATCCATGATGAAGTGTAATATTCCC 60.362 40.741 8.21 0.00 42.09 3.97
153 155 6.542821 TCCATGATGAAGTGTAATATTCCCC 58.457 40.000 0.00 0.00 0.00 4.81
170 172 5.567037 TTCCCCACATATGACTTATCCTG 57.433 43.478 10.38 0.00 0.00 3.86
174 176 6.042781 TCCCCACATATGACTTATCCTGTTAC 59.957 42.308 10.38 0.00 0.00 2.50
179 181 1.135527 TGACTTATCCTGTTACGGGCG 59.864 52.381 5.12 0.00 0.00 6.13
180 182 1.406539 GACTTATCCTGTTACGGGCGA 59.593 52.381 5.12 0.00 0.00 5.54
194 196 0.811219 GGGCGATTACCGGTTACACC 60.811 60.000 15.04 8.71 39.04 4.16
197 199 0.173255 CGATTACCGGTTACACCCGT 59.827 55.000 15.04 0.00 46.66 5.28
202 204 0.975887 ACCGGTTACACCCGTACAAT 59.024 50.000 0.00 0.00 46.66 2.71
204 206 2.166254 ACCGGTTACACCCGTACAATAG 59.834 50.000 0.00 0.00 46.66 1.73
206 208 3.438360 CGGTTACACCCGTACAATAGAC 58.562 50.000 0.00 0.00 43.07 2.59
216 218 6.537301 CACCCGTACAATAGACAATACACAAT 59.463 38.462 0.00 0.00 0.00 2.71
237 239 7.010552 CACAATGGTGTTCAAGTAGCTAGTATC 59.989 40.741 0.35 0.00 40.24 2.24
240 242 4.650131 GGTGTTCAAGTAGCTAGTATCCCT 59.350 45.833 0.35 0.00 0.00 4.20
242 244 6.274579 GTGTTCAAGTAGCTAGTATCCCTTC 58.725 44.000 0.35 0.00 0.00 3.46
262 264 9.020731 TCCCTTCAATTTGAATTTACTACCTTC 57.979 33.333 12.04 0.00 35.59 3.46
324 327 5.833131 TCAACTTTCCATAGCCTTCTGTTTT 59.167 36.000 0.00 0.00 0.00 2.43
325 328 7.001674 TCAACTTTCCATAGCCTTCTGTTTTA 58.998 34.615 0.00 0.00 0.00 1.52
335 338 4.347876 AGCCTTCTGTTTTAATTTTGCCCT 59.652 37.500 0.00 0.00 0.00 5.19
337 340 6.042666 AGCCTTCTGTTTTAATTTTGCCCTTA 59.957 34.615 0.00 0.00 0.00 2.69
339 342 7.213678 CCTTCTGTTTTAATTTTGCCCTTACA 58.786 34.615 0.00 0.00 0.00 2.41
341 344 9.921637 CTTCTGTTTTAATTTTGCCCTTACATA 57.078 29.630 0.00 0.00 0.00 2.29
343 346 8.861086 TCTGTTTTAATTTTGCCCTTACATACA 58.139 29.630 0.00 0.00 0.00 2.29
344 347 9.651913 CTGTTTTAATTTTGCCCTTACATACAT 57.348 29.630 0.00 0.00 0.00 2.29
348 351 8.918961 TTAATTTTGCCCTTACATACATTTCG 57.081 30.769 0.00 0.00 0.00 3.46
350 353 3.275617 TGCCCTTACATACATTTCGCT 57.724 42.857 0.00 0.00 0.00 4.93
351 354 3.616219 TGCCCTTACATACATTTCGCTT 58.384 40.909 0.00 0.00 0.00 4.68
352 355 4.013728 TGCCCTTACATACATTTCGCTTT 58.986 39.130 0.00 0.00 0.00 3.51
353 356 4.095782 TGCCCTTACATACATTTCGCTTTC 59.904 41.667 0.00 0.00 0.00 2.62
354 357 4.335594 GCCCTTACATACATTTCGCTTTCT 59.664 41.667 0.00 0.00 0.00 2.52
355 358 5.504173 GCCCTTACATACATTTCGCTTTCTC 60.504 44.000 0.00 0.00 0.00 2.87
356 359 5.007724 CCCTTACATACATTTCGCTTTCTCC 59.992 44.000 0.00 0.00 0.00 3.71
386 389 2.357034 ATGGACACGTGCACGACC 60.357 61.111 42.94 35.56 43.02 4.79
397 400 2.665000 CACGACCCCATGCAGAGT 59.335 61.111 0.00 0.00 0.00 3.24
424 427 0.448593 GCAGAGAACGTAGCGACTCT 59.551 55.000 13.23 13.23 41.21 3.24
470 473 6.183360 CGTTTACAATACTTCGGCTCTCAATT 60.183 38.462 0.00 0.00 0.00 2.32
471 474 7.527457 GTTTACAATACTTCGGCTCTCAATTT 58.473 34.615 0.00 0.00 0.00 1.82
499 502 6.514947 TGCAAGCAAAATAGTCAAGAAACAT 58.485 32.000 0.00 0.00 0.00 2.71
539 542 0.179092 GCCGGTTAGTCCTTATGCGT 60.179 55.000 1.90 0.00 0.00 5.24
541 544 2.861360 GCCGGTTAGTCCTTATGCGTAG 60.861 54.545 1.90 0.00 0.00 3.51
546 549 6.349944 CCGGTTAGTCCTTATGCGTAGAATAT 60.350 42.308 0.00 0.00 0.00 1.28
632 643 9.398170 CAACATACAAAGGTGACAATCTAAAAG 57.602 33.333 0.00 0.00 0.00 2.27
700 715 2.743928 GAGTGGCAACGGCTCTGG 60.744 66.667 0.00 0.00 40.87 3.86
703 718 1.741770 GTGGCAACGGCTCTGGTAG 60.742 63.158 0.00 0.00 40.87 3.18
711 726 3.851128 GCTCTGGTAGGCGGGACC 61.851 72.222 0.00 0.00 37.49 4.46
714 729 3.470888 CTGGTAGGCGGGACCCAG 61.471 72.222 12.15 4.60 40.58 4.45
716 731 2.686106 GGTAGGCGGGACCCAGAA 60.686 66.667 12.15 0.00 40.58 3.02
737 752 3.859411 AAAACAACGCCACTTCTTCAA 57.141 38.095 0.00 0.00 0.00 2.69
738 753 3.420839 AAACAACGCCACTTCTTCAAG 57.579 42.857 0.00 0.00 35.50 3.02
742 757 1.302832 CGCCACTTCTTCAAGGGCT 60.303 57.895 0.00 0.00 40.89 5.19
744 759 1.454201 GCCACTTCTTCAAGGGCTAC 58.546 55.000 0.00 0.00 40.35 3.58
745 760 1.271379 GCCACTTCTTCAAGGGCTACA 60.271 52.381 0.00 0.00 40.35 2.74
753 768 1.737838 TCAAGGGCTACATCGCAAAG 58.262 50.000 0.00 0.00 0.00 2.77
802 817 2.518112 TGCGCAAACTTCCAGGCA 60.518 55.556 8.16 0.00 0.00 4.75
884 905 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
937 963 1.857348 AAAACCCTAGCCCCAGCCT 60.857 57.895 0.00 0.00 41.25 4.58
956 982 4.787280 CCTCCTCCGGCCACCTCT 62.787 72.222 2.24 0.00 0.00 3.69
1340 1371 1.280421 GGTCTTCCTGCATTCCTCAGT 59.720 52.381 0.00 0.00 0.00 3.41
1359 1390 6.295123 CCTCAGTACCTTTTACTGCTGAAGTA 60.295 42.308 6.57 0.00 43.30 2.24
1361 1392 7.097192 TCAGTACCTTTTACTGCTGAAGTATG 58.903 38.462 6.57 0.00 43.30 2.39
1367 1398 5.611796 TTTACTGCTGAAGTATGCTGTTG 57.388 39.130 0.00 0.00 41.10 3.33
1392 1423 4.021280 TGCAGAAGCTTATTTTCCAATGCA 60.021 37.500 0.00 0.00 42.74 3.96
1425 1456 8.519799 ACCCAGTTAGTTTTACATCATATTGG 57.480 34.615 0.00 0.00 0.00 3.16
1475 1506 1.594397 GAAGTTGCTTTGCTTTGTGGC 59.406 47.619 0.00 0.00 0.00 5.01
1483 1516 0.457509 TTGCTTTGTGGCGTGTGTTG 60.458 50.000 0.00 0.00 34.52 3.33
1665 1711 3.062639 GTGATTGTATTGAGTGTGCTCCG 59.937 47.826 0.00 0.00 40.95 4.63
1781 1827 1.466856 ATTTGACCAGATGCATGCGT 58.533 45.000 13.43 13.43 0.00 5.24
1789 1835 0.467384 AGATGCATGCGTTAGAGGCT 59.533 50.000 14.88 2.06 0.00 4.58
1843 1890 2.972625 TGCTTGCGCATAGTTAACTCT 58.027 42.857 12.75 0.00 42.25 3.24
1849 1896 6.554334 TTGCGCATAGTTAACTCTTTTCTT 57.446 33.333 12.75 0.00 0.00 2.52
1934 1981 3.303526 GGCATGTACGTTTCGACTGTTTT 60.304 43.478 0.00 0.00 0.00 2.43
1950 1997 9.199982 TCGACTGTTTTTCTGGTACTTAATTAG 57.800 33.333 0.00 0.00 0.00 1.73
1974 2021 4.947388 CGTTCCATTCAATTTAGGGGAGAA 59.053 41.667 0.00 0.00 0.00 2.87
2007 2054 6.839124 AGATGATCCATGTTAGTTTTGCAA 57.161 33.333 0.00 0.00 0.00 4.08
2025 2073 2.857483 CAACTTGATACCACCACCACA 58.143 47.619 0.00 0.00 0.00 4.17
2030 2078 5.253330 ACTTGATACCACCACCACATTTAG 58.747 41.667 0.00 0.00 0.00 1.85
2062 2110 3.499537 TCACAATAACTTGAGCTGCACAG 59.500 43.478 1.02 0.00 36.20 3.66
2066 2114 4.756084 ATAACTTGAGCTGCACAGTTTC 57.244 40.909 13.91 0.00 33.24 2.78
2067 2115 1.312815 ACTTGAGCTGCACAGTTTCC 58.687 50.000 1.02 0.00 0.00 3.13
2068 2116 1.311859 CTTGAGCTGCACAGTTTCCA 58.688 50.000 1.02 0.00 0.00 3.53
2069 2117 1.677576 CTTGAGCTGCACAGTTTCCAA 59.322 47.619 1.02 0.00 0.00 3.53
2070 2118 1.985473 TGAGCTGCACAGTTTCCAAT 58.015 45.000 1.02 0.00 0.00 3.16
2071 2119 2.309613 TGAGCTGCACAGTTTCCAATT 58.690 42.857 1.02 0.00 0.00 2.32
2072 2120 2.694628 TGAGCTGCACAGTTTCCAATTT 59.305 40.909 1.02 0.00 0.00 1.82
2073 2121 3.888323 TGAGCTGCACAGTTTCCAATTTA 59.112 39.130 1.02 0.00 0.00 1.40
2074 2122 4.340666 TGAGCTGCACAGTTTCCAATTTAA 59.659 37.500 1.02 0.00 0.00 1.52
2075 2123 4.874970 AGCTGCACAGTTTCCAATTTAAG 58.125 39.130 1.02 0.00 0.00 1.85
2076 2124 3.429881 GCTGCACAGTTTCCAATTTAAGC 59.570 43.478 0.00 0.00 0.00 3.09
2077 2125 3.988819 TGCACAGTTTCCAATTTAAGCC 58.011 40.909 0.00 0.00 0.00 4.35
2078 2126 3.244044 TGCACAGTTTCCAATTTAAGCCC 60.244 43.478 0.00 0.00 0.00 5.19
2079 2127 3.244044 GCACAGTTTCCAATTTAAGCCCA 60.244 43.478 0.00 0.00 0.00 5.36
2080 2128 4.742138 GCACAGTTTCCAATTTAAGCCCAA 60.742 41.667 0.00 0.00 0.00 4.12
2081 2129 4.749598 CACAGTTTCCAATTTAAGCCCAAC 59.250 41.667 0.00 0.00 0.00 3.77
2082 2130 4.653801 ACAGTTTCCAATTTAAGCCCAACT 59.346 37.500 0.00 0.00 0.00 3.16
2083 2131 4.990426 CAGTTTCCAATTTAAGCCCAACTG 59.010 41.667 0.00 0.00 35.36 3.16
2084 2132 4.040339 AGTTTCCAATTTAAGCCCAACTGG 59.960 41.667 0.00 0.00 37.09 4.00
2085 2133 3.252554 TCCAATTTAAGCCCAACTGGT 57.747 42.857 0.00 0.00 36.04 4.00
2086 2134 4.390129 TCCAATTTAAGCCCAACTGGTA 57.610 40.909 0.00 0.00 36.04 3.25
2087 2135 4.083565 TCCAATTTAAGCCCAACTGGTAC 58.916 43.478 0.00 0.00 36.04 3.34
2088 2136 4.086457 CCAATTTAAGCCCAACTGGTACT 58.914 43.478 0.00 0.00 36.04 2.73
2089 2137 4.526650 CCAATTTAAGCCCAACTGGTACTT 59.473 41.667 6.53 6.53 36.04 2.24
2090 2138 5.469479 CAATTTAAGCCCAACTGGTACTTG 58.531 41.667 10.16 0.00 36.04 3.16
2091 2139 2.871096 TAAGCCCAACTGGTACTTGG 57.129 50.000 5.57 5.57 38.37 3.61
2092 2140 1.145571 AAGCCCAACTGGTACTTGGA 58.854 50.000 12.70 0.00 40.76 3.53
2093 2141 0.693049 AGCCCAACTGGTACTTGGAG 59.307 55.000 12.70 5.56 40.76 3.86
2094 2142 0.690762 GCCCAACTGGTACTTGGAGA 59.309 55.000 12.70 0.00 40.76 3.71
2095 2143 1.610886 GCCCAACTGGTACTTGGAGAC 60.611 57.143 12.70 0.75 40.76 3.36
2096 2144 1.697432 CCCAACTGGTACTTGGAGACA 59.303 52.381 12.70 0.00 40.76 3.41
2097 2145 2.305927 CCCAACTGGTACTTGGAGACAT 59.694 50.000 12.70 0.00 40.76 3.06
2098 2146 3.517901 CCCAACTGGTACTTGGAGACATA 59.482 47.826 12.70 0.00 40.76 2.29
2099 2147 4.164221 CCCAACTGGTACTTGGAGACATAT 59.836 45.833 12.70 0.00 40.76 1.78
2100 2148 5.339200 CCCAACTGGTACTTGGAGACATATT 60.339 44.000 12.70 0.00 40.76 1.28
2101 2149 6.180472 CCAACTGGTACTTGGAGACATATTT 58.820 40.000 6.53 0.00 40.76 1.40
2102 2150 7.335627 CCAACTGGTACTTGGAGACATATTTA 58.664 38.462 6.53 0.00 40.76 1.40
2103 2151 7.495934 CCAACTGGTACTTGGAGACATATTTAG 59.504 40.741 6.53 0.00 40.76 1.85
2104 2152 7.735326 ACTGGTACTTGGAGACATATTTAGT 57.265 36.000 0.00 0.00 42.32 2.24
2105 2153 8.147244 ACTGGTACTTGGAGACATATTTAGTT 57.853 34.615 0.00 0.00 42.32 2.24
2106 2154 8.041323 ACTGGTACTTGGAGACATATTTAGTTG 58.959 37.037 0.00 0.00 42.32 3.16
2107 2155 8.141298 TGGTACTTGGAGACATATTTAGTTGA 57.859 34.615 0.00 0.00 42.32 3.18
2108 2156 8.598916 TGGTACTTGGAGACATATTTAGTTGAA 58.401 33.333 0.00 0.00 42.32 2.69
2109 2157 9.444600 GGTACTTGGAGACATATTTAGTTGAAA 57.555 33.333 0.00 0.00 42.32 2.69
2115 2163 9.567776 TGGAGACATATTTAGTTGAAAAAGTCA 57.432 29.630 0.00 0.00 32.70 3.41
2116 2164 9.827411 GGAGACATATTTAGTTGAAAAAGTCAC 57.173 33.333 0.00 0.00 35.39 3.67
2135 2183 3.499537 TCACAATAACTTGAGCTGCACAG 59.500 43.478 1.02 0.00 36.20 3.66
2441 2489 1.817099 CTCATCGGGTTCAGGCTGC 60.817 63.158 10.34 0.00 0.00 5.25
2601 2649 2.347731 GGTAAGTTCTGTACCAGCTGC 58.652 52.381 8.66 0.00 40.73 5.25
2684 2732 1.880271 TATGTTTTTCCCGCGTGTGA 58.120 45.000 4.92 0.00 0.00 3.58
2700 2749 4.319766 GCGTGTGACATTCTTCATTTCTGT 60.320 41.667 0.00 0.00 0.00 3.41
2714 2763 6.206395 TCATTTCTGTTTGTTTTCTGCTGA 57.794 33.333 0.00 0.00 0.00 4.26
2715 2764 6.629128 TCATTTCTGTTTGTTTTCTGCTGAA 58.371 32.000 1.33 1.33 0.00 3.02
2716 2765 6.753279 TCATTTCTGTTTGTTTTCTGCTGAAG 59.247 34.615 6.13 0.00 33.28 3.02
2717 2766 4.637483 TCTGTTTGTTTTCTGCTGAAGG 57.363 40.909 6.13 0.00 33.28 3.46
2718 2767 3.381272 TCTGTTTGTTTTCTGCTGAAGGG 59.619 43.478 6.13 0.00 33.28 3.95
2719 2768 2.430332 TGTTTGTTTTCTGCTGAAGGGG 59.570 45.455 6.13 0.00 33.28 4.79
2720 2769 2.693074 GTTTGTTTTCTGCTGAAGGGGA 59.307 45.455 6.13 0.00 33.28 4.81
2721 2770 2.276732 TGTTTTCTGCTGAAGGGGAG 57.723 50.000 6.13 0.00 33.28 4.30
2722 2771 0.884514 GTTTTCTGCTGAAGGGGAGC 59.115 55.000 6.13 0.00 36.95 4.70
2723 2772 0.251341 TTTTCTGCTGAAGGGGAGCC 60.251 55.000 6.13 0.00 35.43 4.70
2724 2773 1.136329 TTTCTGCTGAAGGGGAGCCT 61.136 55.000 6.13 0.00 35.43 4.58
2725 2774 1.136329 TTCTGCTGAAGGGGAGCCTT 61.136 55.000 1.33 0.00 35.43 4.35
2726 2775 1.378250 CTGCTGAAGGGGAGCCTTG 60.378 63.158 0.00 0.00 35.43 3.61
2727 2776 2.044551 GCTGAAGGGGAGCCTTGG 60.045 66.667 0.00 0.00 0.00 3.61
2728 2777 2.044551 CTGAAGGGGAGCCTTGGC 60.045 66.667 2.97 2.97 0.00 4.52
2729 2778 3.984193 CTGAAGGGGAGCCTTGGCG 62.984 68.421 5.95 0.00 0.00 5.69
2737 2786 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2738 2787 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2739 2788 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2740 2789 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2741 2790 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2742 2791 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2743 2792 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2748 2797 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2749 2798 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2750 2799 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2751 2800 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2752 2801 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2753 2802 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2754 2803 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2755 2804 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2756 2805 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2757 2806 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2758 2807 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2759 2808 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2760 2809 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2761 2810 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2762 2811 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2777 2826 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2778 2827 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2779 2828 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2780 2829 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2781 2830 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2782 2831 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2783 2832 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2784 2833 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2785 2834 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2786 2835 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2800 2849 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2801 2850 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2802 2851 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2803 2852 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2804 2853 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2805 2854 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2806 2855 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2807 2856 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2808 2857 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2809 2858 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2810 2859 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2811 2860 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2812 2861 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2813 2862 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2814 2863 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2815 2864 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2816 2865 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2817 2866 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2818 2867 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2819 2868 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2820 2869 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2821 2870 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2822 2871 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2823 2872 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2824 2873 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2825 2874 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2826 2875 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2827 2876 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2828 2877 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2829 2878 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2830 2879 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2831 2880 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2832 2881 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2833 2882 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2834 2883 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2835 2884 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2836 2885 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2837 2886 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2842 2891 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2843 2892 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2844 2893 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2845 2894 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2846 2895 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2847 2896 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2848 2897 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2849 2898 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2850 2899 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2851 2900 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2852 2901 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2853 2902 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2854 2903 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2855 2904 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2856 2905 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2857 2906 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2858 2907 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2859 2908 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2860 2909 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2861 2910 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2886 2935 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2887 2936 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2888 2937 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2889 2938 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2890 2939 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2891 2940 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2892 2941 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2893 2942 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2894 2943 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
2895 2944 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
2921 2970 3.265737 TGGGTATTTGCATACTGTGTCCT 59.734 43.478 0.00 0.00 36.28 3.85
2922 2971 3.877508 GGGTATTTGCATACTGTGTCCTC 59.122 47.826 0.00 0.00 36.28 3.71
2923 2972 4.384208 GGGTATTTGCATACTGTGTCCTCT 60.384 45.833 0.00 0.00 36.28 3.69
2924 2973 5.163343 GGGTATTTGCATACTGTGTCCTCTA 60.163 44.000 0.00 0.00 36.28 2.43
2925 2974 5.986135 GGTATTTGCATACTGTGTCCTCTAG 59.014 44.000 0.00 0.00 36.28 2.43
2926 2975 3.526931 TTGCATACTGTGTCCTCTAGC 57.473 47.619 0.00 0.00 0.00 3.42
2927 2976 1.757118 TGCATACTGTGTCCTCTAGCC 59.243 52.381 0.00 0.00 0.00 3.93
2928 2977 2.035632 GCATACTGTGTCCTCTAGCCT 58.964 52.381 0.00 0.00 0.00 4.58
2929 2978 3.223435 GCATACTGTGTCCTCTAGCCTA 58.777 50.000 0.00 0.00 0.00 3.93
2930 2979 3.004944 GCATACTGTGTCCTCTAGCCTAC 59.995 52.174 0.00 0.00 0.00 3.18
2931 2980 2.146920 ACTGTGTCCTCTAGCCTACC 57.853 55.000 0.00 0.00 0.00 3.18
2932 2981 1.342175 ACTGTGTCCTCTAGCCTACCC 60.342 57.143 0.00 0.00 0.00 3.69
2933 2982 0.032416 TGTGTCCTCTAGCCTACCCC 60.032 60.000 0.00 0.00 0.00 4.95
2934 2983 0.032416 GTGTCCTCTAGCCTACCCCA 60.032 60.000 0.00 0.00 0.00 4.96
2935 2984 0.714180 TGTCCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
2936 2985 1.121378 GTCCTCTAGCCTACCCCAAC 58.879 60.000 0.00 0.00 0.00 3.77
2937 2986 1.016415 TCCTCTAGCCTACCCCAACT 58.984 55.000 0.00 0.00 0.00 3.16
2938 2987 1.365028 TCCTCTAGCCTACCCCAACTT 59.635 52.381 0.00 0.00 0.00 2.66
2939 2988 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
2940 2989 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
2941 2990 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
2942 2991 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2943 2992 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2955 3004 5.592104 CAACTTGTTTGGGACTAAAGGTT 57.408 39.130 0.00 0.00 0.00 3.50
2956 3005 5.972935 CAACTTGTTTGGGACTAAAGGTTT 58.027 37.500 0.00 0.00 0.00 3.27
2957 3006 6.403049 CAACTTGTTTGGGACTAAAGGTTTT 58.597 36.000 0.00 0.00 0.00 2.43
2958 3007 5.972935 ACTTGTTTGGGACTAAAGGTTTTG 58.027 37.500 0.00 0.00 0.00 2.44
2959 3008 5.482526 ACTTGTTTGGGACTAAAGGTTTTGT 59.517 36.000 0.00 0.00 0.00 2.83
2960 3009 6.014070 ACTTGTTTGGGACTAAAGGTTTTGTT 60.014 34.615 0.00 0.00 0.00 2.83
2961 3010 5.725362 TGTTTGGGACTAAAGGTTTTGTTG 58.275 37.500 0.00 0.00 0.00 3.33
2962 3011 5.246429 TGTTTGGGACTAAAGGTTTTGTTGT 59.754 36.000 0.00 0.00 0.00 3.32
2963 3012 6.167685 GTTTGGGACTAAAGGTTTTGTTGTT 58.832 36.000 0.00 0.00 0.00 2.83
2964 3013 5.331876 TGGGACTAAAGGTTTTGTTGTTG 57.668 39.130 0.00 0.00 0.00 3.33
2965 3014 4.773149 TGGGACTAAAGGTTTTGTTGTTGT 59.227 37.500 0.00 0.00 0.00 3.32
2966 3015 5.246429 TGGGACTAAAGGTTTTGTTGTTGTT 59.754 36.000 0.00 0.00 0.00 2.83
2967 3016 5.579119 GGGACTAAAGGTTTTGTTGTTGTTG 59.421 40.000 0.00 0.00 0.00 3.33
2968 3017 6.160684 GGACTAAAGGTTTTGTTGTTGTTGT 58.839 36.000 0.00 0.00 0.00 3.32
2969 3018 6.309494 GGACTAAAGGTTTTGTTGTTGTTGTC 59.691 38.462 0.00 0.00 0.00 3.18
2970 3019 6.160684 ACTAAAGGTTTTGTTGTTGTTGTCC 58.839 36.000 0.00 0.00 0.00 4.02
3015 3064 6.000246 TCATATTCATCCAGTTGCCTACAA 58.000 37.500 0.00 0.00 0.00 2.41
3033 3082 5.577945 CCTACAAATGGCATTTTAAGCTGTG 59.422 40.000 22.26 12.04 0.00 3.66
3050 3099 3.181487 GCTGTGACCATTCTTTGTGTTGT 60.181 43.478 0.00 0.00 0.00 3.32
3099 3232 7.327761 CCTTCTATGCACTCTTGAAACAAAATG 59.672 37.037 0.00 0.00 0.00 2.32
3105 3238 5.659463 CACTCTTGAAACAAAATGGTTGGA 58.341 37.500 0.00 0.00 0.00 3.53
3111 3244 5.982356 TGAAACAAAATGGTTGGAATGACA 58.018 33.333 0.00 0.00 0.00 3.58
3240 3373 4.154195 GGTAGCTATTTGGATGGTATTGCG 59.846 45.833 0.00 0.00 0.00 4.85
3327 3460 7.153217 TGGATTAGTTCGAAATTCCTTTTCC 57.847 36.000 15.23 10.75 40.60 3.13
3425 3558 9.737844 ATTTGTTCCTTTATATGGCAAATTGTT 57.262 25.926 0.00 0.00 33.12 2.83
3462 3595 6.769512 TGGTCTTTAGTTGCTCTAGTGATTT 58.230 36.000 0.00 0.00 0.00 2.17
3498 3631 2.494059 CTCCACTGACATCCGTGTTTT 58.506 47.619 3.24 0.00 39.09 2.43
3579 3712 5.280654 TGTTTTGAGGGTACTAACTTCGT 57.719 39.130 0.00 0.00 0.00 3.85
3818 3951 4.973168 ACTTCCAAATTCTGACTGCACTA 58.027 39.130 0.00 0.00 0.00 2.74
3832 3965 0.388649 GCACTACAGGTCACCACTCG 60.389 60.000 0.00 0.00 0.00 4.18
3846 3979 0.179124 CACTCGCCAGGAGCTAGTTC 60.179 60.000 0.00 0.00 44.66 3.01
3965 4098 3.550678 GCTTTCAGGTCGTTAATCCTACG 59.449 47.826 0.00 0.00 40.23 3.51
3997 4130 3.025262 AGGACGGAGAGGTATGTCTTTC 58.975 50.000 0.00 0.00 0.00 2.62
4018 4151 7.557719 TCTTTCTTGTCTCAGGAGAAAAATTGT 59.442 33.333 0.00 0.00 38.50 2.71
4058 4191 2.357637 TGCCGAGCATTGTTTATAAGGC 59.642 45.455 0.00 0.00 42.11 4.35
4059 4192 2.357637 GCCGAGCATTGTTTATAAGGCA 59.642 45.455 0.00 0.00 39.61 4.75
4064 4197 6.422223 CGAGCATTGTTTATAAGGCAGTAAG 58.578 40.000 0.00 0.00 39.61 2.34
4065 4198 6.511767 CGAGCATTGTTTATAAGGCAGTAAGG 60.512 42.308 0.00 0.00 39.61 2.69
4066 4199 5.067805 AGCATTGTTTATAAGGCAGTAAGGC 59.932 40.000 0.00 0.00 39.61 4.35
4074 4207 3.364277 GGCAGTAAGGCGACCTAAG 57.636 57.895 0.00 0.00 31.13 2.18
4075 4208 0.179081 GGCAGTAAGGCGACCTAAGG 60.179 60.000 0.00 0.00 31.13 2.69
4076 4209 0.535797 GCAGTAAGGCGACCTAAGGT 59.464 55.000 0.00 0.00 39.44 3.50
4115 4248 1.338769 CCAACAGCCTTACGCCTAAGT 60.339 52.381 2.43 0.00 38.78 2.24
4141 4274 1.103398 AGCGGGCATAATGTCAAGGC 61.103 55.000 0.00 0.00 0.00 4.35
4142 4275 1.103398 GCGGGCATAATGTCAAGGCT 61.103 55.000 0.00 0.00 0.00 4.58
4178 4311 1.337823 GCTGTCTAAGCGTCCAAAGGA 60.338 52.381 0.00 0.00 43.45 3.36
4338 4472 1.974236 CTCCTTCCAGTGTGTTCTCCT 59.026 52.381 0.00 0.00 0.00 3.69
4339 4473 1.694150 TCCTTCCAGTGTGTTCTCCTG 59.306 52.381 0.00 0.00 0.00 3.86
4347 4481 4.067896 CAGTGTGTTCTCCTGCAGTTTAT 58.932 43.478 13.81 0.00 0.00 1.40
4384 4518 2.970987 AGTTGGTGGGTAAAATGGCTT 58.029 42.857 0.00 0.00 0.00 4.35
4391 4525 3.320826 GTGGGTAAAATGGCTTCAACTGT 59.679 43.478 0.00 0.00 0.00 3.55
4413 4547 7.599245 ACTGTGAAAACAAGATACTGTACTAGC 59.401 37.037 0.00 0.00 0.00 3.42
4415 4549 7.929245 TGTGAAAACAAGATACTGTACTAGCAA 59.071 33.333 0.00 0.00 0.00 3.91
4433 4567 7.338710 ACTAGCAAGATTTCTATAGTTTGGCA 58.661 34.615 0.00 0.00 0.00 4.92
4631 4766 2.226674 GACAGCTGAGCCCTTTTGTAAC 59.773 50.000 23.35 0.00 0.00 2.50
4632 4767 2.229792 CAGCTGAGCCCTTTTGTAACA 58.770 47.619 8.42 0.00 0.00 2.41
4658 4793 2.159430 CACAGCGCATAAACTTACTGCA 59.841 45.455 11.47 0.00 35.64 4.41
4696 4833 9.670442 AACATACTCCCTCTGTTCCTAAATATA 57.330 33.333 0.00 0.00 0.00 0.86
4697 4834 9.670442 ACATACTCCCTCTGTTCCTAAATATAA 57.330 33.333 0.00 0.00 0.00 0.98
4722 4859 8.171164 AGTCTTTTTAGAGATTTCAACAAGGG 57.829 34.615 0.00 0.00 0.00 3.95
4723 4860 7.998964 AGTCTTTTTAGAGATTTCAACAAGGGA 59.001 33.333 0.00 0.00 0.00 4.20
4724 4861 8.076781 GTCTTTTTAGAGATTTCAACAAGGGAC 58.923 37.037 0.00 0.00 0.00 4.46
4731 4869 8.095452 AGAGATTTCAACAAGGGACTACATAT 57.905 34.615 0.00 0.00 38.49 1.78
4777 4915 5.886960 AGTGTAGATTCACTCATTTTGCC 57.113 39.130 0.00 0.00 44.07 4.52
4790 4928 3.199071 TCATTTTGCCCCGTATGTAGTCT 59.801 43.478 0.00 0.00 0.00 3.24
4791 4929 2.973694 TTTGCCCCGTATGTAGTCTC 57.026 50.000 0.00 0.00 0.00 3.36
4794 4932 3.301794 TGCCCCGTATGTAGTCTCTTA 57.698 47.619 0.00 0.00 0.00 2.10
4838 4976 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
4848 4986 6.239515 GGAACGGAGGGAGTATATGTTTGTAT 60.240 42.308 0.00 0.00 0.00 2.29
4937 5083 2.679837 CTGTTTTGCGGCTCTGTGATAT 59.320 45.455 0.00 0.00 0.00 1.63
4938 5084 2.677836 TGTTTTGCGGCTCTGTGATATC 59.322 45.455 0.00 0.00 0.00 1.63
4939 5085 2.677836 GTTTTGCGGCTCTGTGATATCA 59.322 45.455 0.00 0.00 0.00 2.15
4940 5086 2.916702 TTGCGGCTCTGTGATATCAT 57.083 45.000 9.02 0.00 0.00 2.45
4941 5087 2.445565 TGCGGCTCTGTGATATCATC 57.554 50.000 9.02 3.70 0.00 2.92
5017 5163 2.093235 AGAAGTCACCAGAGCCTATTGC 60.093 50.000 0.00 0.00 41.71 3.56
5049 5195 3.244422 ACGTGAGTGCTTAAATCTTGGGA 60.244 43.478 0.00 0.00 46.97 4.37
5052 5198 5.760253 CGTGAGTGCTTAAATCTTGGGATAT 59.240 40.000 0.00 0.00 0.00 1.63
5053 5199 6.293081 CGTGAGTGCTTAAATCTTGGGATATG 60.293 42.308 0.00 0.00 0.00 1.78
5055 5201 6.543465 TGAGTGCTTAAATCTTGGGATATGTG 59.457 38.462 0.00 0.00 0.00 3.21
5056 5202 6.426587 AGTGCTTAAATCTTGGGATATGTGT 58.573 36.000 0.00 0.00 0.00 3.72
5058 5204 7.067494 AGTGCTTAAATCTTGGGATATGTGTTC 59.933 37.037 0.00 0.00 0.00 3.18
5066 5213 6.409704 TCTTGGGATATGTGTTCTCTCAAAG 58.590 40.000 0.00 0.00 0.00 2.77
5068 5215 5.734720 TGGGATATGTGTTCTCTCAAAGTC 58.265 41.667 0.00 0.00 0.00 3.01
5071 5218 7.180229 TGGGATATGTGTTCTCTCAAAGTCTAA 59.820 37.037 0.00 0.00 0.00 2.10
5436 5593 5.739358 GCCATCGAACTTACATAGGCTACTT 60.739 44.000 0.00 0.00 37.89 2.24
5460 5617 1.739196 CTGCTGCTCGCTGCTGTTA 60.739 57.895 19.07 1.31 43.37 2.41
5549 5706 4.707448 CCCCTGTATATCGCATAAGTCTCT 59.293 45.833 0.00 0.00 0.00 3.10
5551 5708 6.096036 CCCTGTATATCGCATAAGTCTCTTG 58.904 44.000 0.00 0.00 0.00 3.02
5570 5727 1.134521 TGTGTCAGCTGTTTCGGAAGT 60.135 47.619 14.67 0.00 0.00 3.01
5594 5751 0.819582 CCCGAGTTTAAGCGTAGGGA 59.180 55.000 12.11 0.00 39.71 4.20
5597 5754 3.551659 CCCGAGTTTAAGCGTAGGGATAC 60.552 52.174 12.11 0.00 39.71 2.24
5631 5790 2.579201 CGAATGGGTCACTCGCCT 59.421 61.111 0.00 0.00 0.00 5.52
5637 5796 2.027751 GGTCACTCGCCTATCGCC 59.972 66.667 0.00 0.00 38.27 5.54
5642 5801 4.685026 CTCGCCTATCGCCCGTCG 62.685 72.222 0.00 0.00 38.27 5.12
5665 5833 6.641314 TCGATCTTAAAAGAACACTGACAGAC 59.359 38.462 10.08 0.00 38.77 3.51
5682 5853 0.234884 GACCGGTTTGCTGAGAAACG 59.765 55.000 9.42 0.00 36.80 3.60
5736 5907 1.136110 AGGAAACGGTGCAAAAACCAG 59.864 47.619 0.00 0.00 40.53 4.00
5746 5917 1.036707 CAAAAACCAGGAAGCCGGAA 58.963 50.000 5.05 0.00 0.00 4.30
5747 5918 1.000274 CAAAAACCAGGAAGCCGGAAG 60.000 52.381 5.05 0.00 0.00 3.46
5748 5919 1.179174 AAAACCAGGAAGCCGGAAGC 61.179 55.000 5.05 0.00 44.25 3.86
5776 5947 1.178276 GAAGAGGAGGAAGAGCGTGA 58.822 55.000 0.00 0.00 0.00 4.35
5791 5962 3.465701 TGACCGTGCAGTCATCCA 58.534 55.556 4.76 0.00 41.78 3.41
5866 6065 3.046087 CGGTCTGCACTGCACCTG 61.046 66.667 0.00 0.00 33.79 4.00
5931 6130 0.593128 GGCCTACTGCAACACACAAG 59.407 55.000 0.00 0.00 43.89 3.16
5954 6153 3.503363 GCACCGAGCCACTGCATC 61.503 66.667 0.00 0.00 41.13 3.91
5955 6154 2.267006 CACCGAGCCACTGCATCT 59.733 61.111 0.00 0.00 41.13 2.90
5981 6180 2.202146 GACCGTCGTCGTCGTCAG 60.202 66.667 10.76 0.00 38.33 3.51
5982 6181 2.947890 GACCGTCGTCGTCGTCAGT 61.948 63.158 10.76 2.02 38.33 3.41
5983 6182 2.202146 CCGTCGTCGTCGTCAGTC 60.202 66.667 10.76 0.00 38.33 3.51
5984 6183 2.547798 CGTCGTCGTCGTCAGTCA 59.452 61.111 3.67 0.00 38.33 3.41
5985 6184 1.787438 CGTCGTCGTCGTCAGTCAC 60.787 63.158 3.67 0.00 38.33 3.67
6018 6226 3.551496 CTCGCACCACCACCACCAT 62.551 63.158 0.00 0.00 0.00 3.55
6087 6305 1.153188 CAGCCTCCACACACACACA 60.153 57.895 0.00 0.00 0.00 3.72
6093 6311 0.675208 TCCACACACACACACACACC 60.675 55.000 0.00 0.00 0.00 4.16
6094 6312 0.957888 CCACACACACACACACACCA 60.958 55.000 0.00 0.00 0.00 4.17
6095 6313 0.447406 CACACACACACACACACCAG 59.553 55.000 0.00 0.00 0.00 4.00
6154 6375 1.443802 CCTTCTTCAGGTCGCCTTTC 58.556 55.000 0.00 0.00 37.99 2.62
6220 6441 2.800273 CGTGCCATTATGCATGCACAAT 60.800 45.455 28.72 21.56 44.30 2.71
6249 6470 0.691413 GCTACCTAGGCCCTCCACTT 60.691 60.000 9.30 0.00 33.74 3.16
6272 6493 0.166814 CGGGCTTCTTGCTTCTTTCG 59.833 55.000 0.00 0.00 42.39 3.46
6276 6497 1.463198 GCTTCTTGCTTCTTTCGCTCG 60.463 52.381 0.00 0.00 38.95 5.03
6293 6514 0.448197 TCGCTCACTCGTCACTCATC 59.552 55.000 0.00 0.00 0.00 2.92
6296 6517 1.135915 GCTCACTCGTCACTCATCCAT 59.864 52.381 0.00 0.00 0.00 3.41
6392 6617 4.270153 TGGGTGGAGGCCAGAGGT 62.270 66.667 5.01 0.00 32.34 3.85
6458 6686 3.838271 TCCGGATGGACTGCGAGC 61.838 66.667 0.00 0.00 41.93 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.333908 CATTTGAATGAATGTTGGAAACGAAAA 58.666 29.630 0.00 0.00 43.93 2.29
1 2 7.493971 ACATTTGAATGAATGTTGGAAACGAAA 59.506 29.630 10.48 0.00 45.38 3.46
2 3 6.983307 ACATTTGAATGAATGTTGGAAACGAA 59.017 30.769 10.48 0.00 45.38 3.85
4 5 6.768029 ACATTTGAATGAATGTTGGAAACG 57.232 33.333 10.48 0.00 45.38 3.60
35 36 7.285069 TGTAACGTTTGAATGTTTCTGTATCG 58.715 34.615 5.91 0.00 38.88 2.92
38 39 8.144155 TCATGTAACGTTTGAATGTTTCTGTA 57.856 30.769 5.91 0.00 38.88 2.74
92 93 5.528870 ACGGATTTGAAAAATGAGTTCCAC 58.471 37.500 0.00 0.00 0.00 4.02
107 108 8.267620 TGGATGCATAATATCTTACGGATTTG 57.732 34.615 0.00 0.00 35.98 2.32
137 139 8.157476 AGTCATATGTGGGGAATATTACACTTC 58.843 37.037 0.63 0.00 35.02 3.01
150 152 4.982241 ACAGGATAAGTCATATGTGGGG 57.018 45.455 1.90 0.00 0.00 4.96
151 153 5.926542 CGTAACAGGATAAGTCATATGTGGG 59.073 44.000 1.90 0.00 0.00 4.61
152 154 5.926542 CCGTAACAGGATAAGTCATATGTGG 59.073 44.000 1.90 0.00 0.00 4.17
153 155 5.926542 CCCGTAACAGGATAAGTCATATGTG 59.073 44.000 1.90 0.00 0.00 3.21
170 172 0.460109 AACCGGTAATCGCCCGTAAC 60.460 55.000 8.00 0.00 43.98 2.50
174 176 1.141449 TGTAACCGGTAATCGCCCG 59.859 57.895 8.00 0.00 45.07 6.13
194 196 6.537301 ACCATTGTGTATTGTCTATTGTACGG 59.463 38.462 0.00 0.00 0.00 4.02
216 218 4.404715 GGGATACTAGCTACTTGAACACCA 59.595 45.833 0.00 0.00 0.00 4.17
223 225 7.987458 TCAAATTGAAGGGATACTAGCTACTTG 59.013 37.037 0.00 0.00 0.00 3.16
224 226 8.090788 TCAAATTGAAGGGATACTAGCTACTT 57.909 34.615 0.00 0.00 0.00 2.24
237 239 8.802267 TGAAGGTAGTAAATTCAAATTGAAGGG 58.198 33.333 14.10 0.00 40.05 3.95
292 295 5.250774 AGGCTATGGAAAGTTGAAACTCCTA 59.749 40.000 0.00 0.00 38.57 2.94
295 298 5.707764 AGAAGGCTATGGAAAGTTGAAACTC 59.292 40.000 0.00 0.00 38.57 3.01
308 311 6.313658 GGCAAAATTAAAACAGAAGGCTATGG 59.686 38.462 4.84 0.00 0.00 2.74
324 327 6.975772 GCGAAATGTATGTAAGGGCAAAATTA 59.024 34.615 0.00 0.00 0.00 1.40
325 328 5.810074 GCGAAATGTATGTAAGGGCAAAATT 59.190 36.000 0.00 0.00 0.00 1.82
335 338 6.260050 GGATGGAGAAAGCGAAATGTATGTAA 59.740 38.462 0.00 0.00 0.00 2.41
337 340 4.576463 GGATGGAGAAAGCGAAATGTATGT 59.424 41.667 0.00 0.00 0.00 2.29
339 342 4.576463 GTGGATGGAGAAAGCGAAATGTAT 59.424 41.667 0.00 0.00 0.00 2.29
341 344 2.749621 GTGGATGGAGAAAGCGAAATGT 59.250 45.455 0.00 0.00 0.00 2.71
343 346 3.356529 AGTGGATGGAGAAAGCGAAAT 57.643 42.857 0.00 0.00 0.00 2.17
344 347 2.859165 AGTGGATGGAGAAAGCGAAA 57.141 45.000 0.00 0.00 0.00 3.46
345 348 3.973206 TTAGTGGATGGAGAAAGCGAA 57.027 42.857 0.00 0.00 0.00 4.70
347 350 4.191544 TCAATTAGTGGATGGAGAAAGCG 58.808 43.478 0.00 0.00 0.00 4.68
348 351 6.069684 CATCAATTAGTGGATGGAGAAAGC 57.930 41.667 0.00 0.00 37.77 3.51
356 359 4.034394 CACGTGTCCATCAATTAGTGGATG 59.966 45.833 7.58 5.61 45.57 3.51
372 375 3.876589 ATGGGGTCGTGCACGTGTC 62.877 63.158 35.74 25.53 40.80 3.67
386 389 3.369410 ATGGGCCACTCTGCATGGG 62.369 63.158 9.28 0.00 37.73 4.00
397 400 1.549243 TACGTTCTCTGCATGGGCCA 61.549 55.000 9.61 9.61 40.13 5.36
451 454 7.959651 GCATATAAATTGAGAGCCGAAGTATTG 59.040 37.037 0.00 0.00 0.00 1.90
455 458 5.368145 TGCATATAAATTGAGAGCCGAAGT 58.632 37.500 0.00 0.00 0.00 3.01
471 474 9.787532 GTTTCTTGACTATTTTGCTTGCATATA 57.212 29.630 0.00 0.00 0.00 0.86
499 502 2.688902 TAATAGGGGGCTTCGCTAGA 57.311 50.000 0.00 0.47 42.89 2.43
651 666 5.119931 TCGGTTGCTACGAGTACTTTTTA 57.880 39.130 0.00 0.00 35.12 1.52
661 676 2.345760 GGTCCCTCGGTTGCTACGA 61.346 63.158 0.00 0.00 38.79 3.43
662 677 2.162338 TTGGTCCCTCGGTTGCTACG 62.162 60.000 0.00 0.00 0.00 3.51
665 680 1.002134 CATTGGTCCCTCGGTTGCT 60.002 57.895 0.00 0.00 0.00 3.91
694 709 3.851128 GGTCCCGCCTACCAGAGC 61.851 72.222 0.00 0.00 36.96 4.09
700 715 0.037160 TTTTTCTGGGTCCCGCCTAC 59.963 55.000 2.65 0.00 37.43 3.18
716 731 3.859411 TGAAGAAGTGGCGTTGTTTTT 57.141 38.095 0.00 0.00 0.00 1.94
721 736 0.593128 CCCTTGAAGAAGTGGCGTTG 59.407 55.000 0.00 0.00 0.00 4.10
723 738 1.600916 GCCCTTGAAGAAGTGGCGT 60.601 57.895 0.00 0.00 36.45 5.68
724 739 0.036388 TAGCCCTTGAAGAAGTGGCG 60.036 55.000 4.86 0.00 44.29 5.69
726 741 2.859165 TGTAGCCCTTGAAGAAGTGG 57.141 50.000 0.00 0.00 0.00 4.00
727 742 2.932614 CGATGTAGCCCTTGAAGAAGTG 59.067 50.000 0.00 0.00 0.00 3.16
728 743 2.678190 GCGATGTAGCCCTTGAAGAAGT 60.678 50.000 0.00 0.00 0.00 3.01
729 744 1.936547 GCGATGTAGCCCTTGAAGAAG 59.063 52.381 0.00 0.00 0.00 2.85
737 752 0.745845 CAGCTTTGCGATGTAGCCCT 60.746 55.000 0.00 0.00 35.53 5.19
738 753 1.723870 CAGCTTTGCGATGTAGCCC 59.276 57.895 0.00 0.00 35.53 5.19
742 757 1.242989 TTTGGCAGCTTTGCGATGTA 58.757 45.000 0.00 0.00 35.24 2.29
744 759 0.785979 GTTTTGGCAGCTTTGCGATG 59.214 50.000 0.00 0.00 35.24 3.84
745 760 0.319813 GGTTTTGGCAGCTTTGCGAT 60.320 50.000 0.00 0.00 35.24 4.58
753 768 1.172812 ACGGAGAAGGTTTTGGCAGC 61.173 55.000 0.00 0.00 0.00 5.25
802 817 2.282180 GCGGTGGTGGTGATGGTT 60.282 61.111 0.00 0.00 0.00 3.67
910 931 1.683441 CTAGGGTTTTCGGGGTGCT 59.317 57.895 0.00 0.00 0.00 4.40
911 932 2.044555 GCTAGGGTTTTCGGGGTGC 61.045 63.158 0.00 0.00 0.00 5.01
917 938 1.749258 GCTGGGGCTAGGGTTTTCG 60.749 63.158 0.00 0.00 35.22 3.46
919 940 1.857348 AGGCTGGGGCTAGGGTTTT 60.857 57.895 0.00 0.00 36.44 2.43
1319 1350 0.250234 TGAGGAATGCAGGAAGACCG 59.750 55.000 0.00 0.00 41.83 4.79
1326 1357 3.356529 AAAGGTACTGAGGAATGCAGG 57.643 47.619 0.00 0.00 40.86 4.85
1340 1371 5.874810 CAGCATACTTCAGCAGTAAAAGGTA 59.125 40.000 0.00 0.00 41.56 3.08
1359 1390 1.835494 AGCTTCTGCATCAACAGCAT 58.165 45.000 0.00 0.00 41.82 3.79
1361 1392 4.367386 AATAAGCTTCTGCATCAACAGC 57.633 40.909 0.00 0.00 42.74 4.40
1367 1398 5.233689 GCATTGGAAAATAAGCTTCTGCATC 59.766 40.000 0.00 0.00 42.74 3.91
1392 1423 8.661752 ATGTAAAACTAACTGGGTCTAGTAGT 57.338 34.615 0.00 0.00 0.00 2.73
1441 1472 8.820933 GCAAAGCAACTTCTCTTTTTCTAATTT 58.179 29.630 0.00 0.00 30.79 1.82
1475 1506 3.272439 AGATTCACAATGCAACACACG 57.728 42.857 0.00 0.00 0.00 4.49
1483 1516 3.057033 GGCCCATCATAGATTCACAATGC 60.057 47.826 0.00 0.00 0.00 3.56
1528 1574 4.275936 GCACAGACAGAAGTAACACCATTT 59.724 41.667 0.00 0.00 0.00 2.32
1653 1699 2.280797 GCCAACGGAGCACACTCA 60.281 61.111 0.00 0.00 45.42 3.41
1665 1711 0.887387 TTTCACGGTAGCCAGCCAAC 60.887 55.000 0.00 0.00 0.00 3.77
1711 1757 2.825532 GCAGACCCCAACACAATGTTAT 59.174 45.455 0.00 0.00 38.77 1.89
1724 1770 1.992519 ATCCAGCATCTGCAGACCCC 61.993 60.000 20.97 10.24 45.16 4.95
1781 1827 5.296780 GCAATAGTATGTGCAAAGCCTCTAA 59.703 40.000 10.55 0.00 40.58 2.10
1934 1981 6.040209 TGGAACGCTAATTAAGTACCAGAA 57.960 37.500 0.00 0.00 0.00 3.02
1950 1997 3.020984 TCCCCTAAATTGAATGGAACGC 58.979 45.455 0.00 0.00 0.00 4.84
1974 2021 8.878211 ACTAACATGGATCATCTATGTGAATCT 58.122 33.333 16.76 4.22 45.90 2.40
2007 2054 3.806949 AATGTGGTGGTGGTATCAAGT 57.193 42.857 0.00 0.00 0.00 3.16
2030 2078 7.702348 AGCTCAAGTTATTGTGACTTTTTCAAC 59.298 33.333 0.00 0.00 35.26 3.18
2062 2110 4.202315 ACCAGTTGGGCTTAAATTGGAAAC 60.202 41.667 13.52 0.00 42.05 2.78
2066 2114 4.086457 AGTACCAGTTGGGCTTAAATTGG 58.914 43.478 2.79 7.66 42.05 3.16
2067 2115 5.469479 CAAGTACCAGTTGGGCTTAAATTG 58.531 41.667 2.79 0.00 42.05 2.32
2068 2116 4.526650 CCAAGTACCAGTTGGGCTTAAATT 59.473 41.667 2.79 0.00 43.38 1.82
2069 2117 4.086457 CCAAGTACCAGTTGGGCTTAAAT 58.914 43.478 2.79 0.00 43.38 1.40
2070 2118 3.138653 TCCAAGTACCAGTTGGGCTTAAA 59.861 43.478 11.34 0.00 46.31 1.52
2071 2119 2.712087 TCCAAGTACCAGTTGGGCTTAA 59.288 45.455 11.34 0.00 46.31 1.85
2072 2120 2.304761 CTCCAAGTACCAGTTGGGCTTA 59.695 50.000 11.34 0.00 46.31 3.09
2073 2121 1.073923 CTCCAAGTACCAGTTGGGCTT 59.926 52.381 11.34 4.08 46.31 4.35
2074 2122 0.693049 CTCCAAGTACCAGTTGGGCT 59.307 55.000 11.34 0.00 46.31 5.19
2075 2123 0.690762 TCTCCAAGTACCAGTTGGGC 59.309 55.000 11.34 0.00 46.31 5.36
2076 2124 1.697432 TGTCTCCAAGTACCAGTTGGG 59.303 52.381 11.34 4.31 46.31 4.12
2078 2126 8.041323 ACTAAATATGTCTCCAAGTACCAGTTG 58.959 37.037 0.00 0.00 0.00 3.16
2079 2127 8.147244 ACTAAATATGTCTCCAAGTACCAGTT 57.853 34.615 0.00 0.00 0.00 3.16
2080 2128 7.735326 ACTAAATATGTCTCCAAGTACCAGT 57.265 36.000 0.00 0.00 0.00 4.00
2081 2129 8.258007 TCAACTAAATATGTCTCCAAGTACCAG 58.742 37.037 0.00 0.00 0.00 4.00
2082 2130 8.141298 TCAACTAAATATGTCTCCAAGTACCA 57.859 34.615 0.00 0.00 0.00 3.25
2083 2131 9.444600 TTTCAACTAAATATGTCTCCAAGTACC 57.555 33.333 0.00 0.00 0.00 3.34
2089 2137 9.567776 TGACTTTTTCAACTAAATATGTCTCCA 57.432 29.630 0.00 0.00 0.00 3.86
2090 2138 9.827411 GTGACTTTTTCAACTAAATATGTCTCC 57.173 33.333 0.00 0.00 35.39 3.71
2102 2150 7.702348 GCTCAAGTTATTGTGACTTTTTCAACT 59.298 33.333 0.00 0.00 35.26 3.16
2103 2151 7.702348 AGCTCAAGTTATTGTGACTTTTTCAAC 59.298 33.333 0.00 0.00 35.26 3.18
2104 2152 7.701924 CAGCTCAAGTTATTGTGACTTTTTCAA 59.298 33.333 0.00 0.00 35.26 2.69
2105 2153 7.195646 CAGCTCAAGTTATTGTGACTTTTTCA 58.804 34.615 0.00 0.00 35.26 2.69
2106 2154 6.142958 GCAGCTCAAGTTATTGTGACTTTTTC 59.857 38.462 0.00 0.00 35.26 2.29
2107 2155 5.979517 GCAGCTCAAGTTATTGTGACTTTTT 59.020 36.000 0.00 0.00 35.26 1.94
2108 2156 5.067674 TGCAGCTCAAGTTATTGTGACTTTT 59.932 36.000 0.00 0.00 35.26 2.27
2109 2157 4.580167 TGCAGCTCAAGTTATTGTGACTTT 59.420 37.500 0.00 0.00 35.26 2.66
2110 2158 4.023707 GTGCAGCTCAAGTTATTGTGACTT 60.024 41.667 0.00 0.00 37.82 3.01
2111 2159 3.499918 GTGCAGCTCAAGTTATTGTGACT 59.500 43.478 0.00 0.00 37.68 3.41
2112 2160 3.250762 TGTGCAGCTCAAGTTATTGTGAC 59.749 43.478 0.00 0.00 37.68 3.67
2113 2161 3.475575 TGTGCAGCTCAAGTTATTGTGA 58.524 40.909 0.00 0.00 37.68 3.58
2114 2162 3.251729 ACTGTGCAGCTCAAGTTATTGTG 59.748 43.478 0.00 0.00 37.68 3.33
2115 2163 3.480470 ACTGTGCAGCTCAAGTTATTGT 58.520 40.909 0.00 0.00 37.68 2.71
2116 2164 4.494350 AACTGTGCAGCTCAAGTTATTG 57.506 40.909 0.00 0.00 37.80 1.90
2117 2165 4.022849 GGAAACTGTGCAGCTCAAGTTATT 60.023 41.667 7.95 0.00 0.00 1.40
2118 2166 3.503748 GGAAACTGTGCAGCTCAAGTTAT 59.496 43.478 7.95 1.40 0.00 1.89
2119 2167 2.878406 GGAAACTGTGCAGCTCAAGTTA 59.122 45.455 7.95 0.00 0.00 2.24
2120 2168 1.678101 GGAAACTGTGCAGCTCAAGTT 59.322 47.619 0.00 0.82 0.00 2.66
2121 2169 1.312815 GGAAACTGTGCAGCTCAAGT 58.687 50.000 0.00 0.00 0.00 3.16
2122 2170 1.311859 TGGAAACTGTGCAGCTCAAG 58.688 50.000 0.00 0.00 0.00 3.02
2123 2171 1.761449 TTGGAAACTGTGCAGCTCAA 58.239 45.000 0.00 0.00 0.00 3.02
2135 2183 4.314961 CCAGTTGGGCTTAAATTGGAAAC 58.685 43.478 4.47 0.00 0.00 2.78
2441 2489 1.183676 AAGGCTGCTTTGGGCTTGAG 61.184 55.000 0.00 0.00 45.57 3.02
2684 2732 9.090692 CAGAAAACAAACAGAAATGAAGAATGT 57.909 29.630 0.00 0.00 0.00 2.71
2700 2749 2.958355 CTCCCCTTCAGCAGAAAACAAA 59.042 45.455 0.00 0.00 32.35 2.83
2719 2768 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2720 2769 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2721 2770 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2722 2771 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2723 2772 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2724 2773 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2725 2774 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2726 2775 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2730 2779 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2731 2780 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2732 2781 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2733 2782 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2734 2783 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2735 2784 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2736 2785 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2737 2786 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2738 2787 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2739 2788 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2740 2789 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2741 2790 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2742 2791 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2743 2792 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2744 2793 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2745 2794 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2757 2806 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2758 2807 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2759 2808 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2760 2809 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2761 2810 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2762 2811 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2763 2812 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2764 2813 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2765 2814 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2766 2815 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2767 2816 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2768 2817 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2769 2818 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2770 2819 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2771 2820 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2772 2821 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2773 2822 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2774 2823 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2775 2824 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2776 2825 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2777 2826 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2778 2827 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2790 2839 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2791 2840 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2792 2841 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2793 2842 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2794 2843 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2795 2844 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2796 2845 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2797 2846 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2798 2847 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2799 2848 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2800 2849 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2801 2850 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2802 2851 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2803 2852 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2804 2853 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2805 2854 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2806 2855 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2807 2856 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2808 2857 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2809 2858 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2810 2859 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2811 2860 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2812 2861 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2813 2862 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2814 2863 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2815 2864 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2816 2865 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2826 2875 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2827 2876 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2828 2877 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2829 2878 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2830 2879 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2831 2880 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2832 2881 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2833 2882 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2834 2883 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2835 2884 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2836 2885 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2837 2886 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2838 2887 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2839 2888 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2840 2889 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2841 2890 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2842 2891 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2843 2892 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2844 2893 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2856 2905 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2859 2908 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2860 2909 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2861 2910 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2862 2911 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2868 2917 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2869 2918 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2870 2919 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2871 2920 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2872 2921 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2893 2942 6.183360 ACACAGTATGCAAATACCCACAAAAA 60.183 34.615 0.00 0.00 42.53 1.94
2894 2943 5.303078 ACACAGTATGCAAATACCCACAAAA 59.697 36.000 0.00 0.00 42.53 2.44
2895 2944 4.830046 ACACAGTATGCAAATACCCACAAA 59.170 37.500 0.00 0.00 42.53 2.83
2896 2945 4.402829 ACACAGTATGCAAATACCCACAA 58.597 39.130 0.00 0.00 42.53 3.33
2897 2946 4.006989 GACACAGTATGCAAATACCCACA 58.993 43.478 0.00 0.00 42.53 4.17
2898 2947 3.377172 GGACACAGTATGCAAATACCCAC 59.623 47.826 0.00 0.00 42.53 4.61
2921 2970 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2922 2971 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2923 2972 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2924 2973 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2933 2982 5.592104 AACCTTTAGTCCCAAACAAGTTG 57.408 39.130 0.00 0.00 36.94 3.16
2934 2983 6.014070 ACAAAACCTTTAGTCCCAAACAAGTT 60.014 34.615 0.00 0.00 0.00 2.66
2935 2984 5.482526 ACAAAACCTTTAGTCCCAAACAAGT 59.517 36.000 0.00 0.00 0.00 3.16
2936 2985 5.972935 ACAAAACCTTTAGTCCCAAACAAG 58.027 37.500 0.00 0.00 0.00 3.16
2937 2986 6.166982 CAACAAAACCTTTAGTCCCAAACAA 58.833 36.000 0.00 0.00 0.00 2.83
2938 2987 5.246429 ACAACAAAACCTTTAGTCCCAAACA 59.754 36.000 0.00 0.00 0.00 2.83
2939 2988 5.726397 ACAACAAAACCTTTAGTCCCAAAC 58.274 37.500 0.00 0.00 0.00 2.93
2940 2989 6.166982 CAACAACAAAACCTTTAGTCCCAAA 58.833 36.000 0.00 0.00 0.00 3.28
2941 2990 5.246429 ACAACAACAAAACCTTTAGTCCCAA 59.754 36.000 0.00 0.00 0.00 4.12
2942 2991 4.773149 ACAACAACAAAACCTTTAGTCCCA 59.227 37.500 0.00 0.00 0.00 4.37
2943 2992 5.333299 ACAACAACAAAACCTTTAGTCCC 57.667 39.130 0.00 0.00 0.00 4.46
2944 2993 6.160684 ACAACAACAACAAAACCTTTAGTCC 58.839 36.000 0.00 0.00 0.00 3.85
2945 2994 6.309494 GGACAACAACAACAAAACCTTTAGTC 59.691 38.462 0.00 0.00 0.00 2.59
2946 2995 6.160684 GGACAACAACAACAAAACCTTTAGT 58.839 36.000 0.00 0.00 0.00 2.24
2947 2996 6.090223 GTGGACAACAACAACAAAACCTTTAG 59.910 38.462 0.00 0.00 0.00 1.85
2948 2997 5.927115 GTGGACAACAACAACAAAACCTTTA 59.073 36.000 0.00 0.00 0.00 1.85
2949 2998 4.752604 GTGGACAACAACAACAAAACCTTT 59.247 37.500 0.00 0.00 0.00 3.11
2950 2999 4.311606 GTGGACAACAACAACAAAACCTT 58.688 39.130 0.00 0.00 0.00 3.50
2951 3000 3.306433 GGTGGACAACAACAACAAAACCT 60.306 43.478 0.00 0.00 36.56 3.50
2952 3001 2.997303 GGTGGACAACAACAACAAAACC 59.003 45.455 0.00 0.00 36.56 3.27
2953 3002 3.677596 CAGGTGGACAACAACAACAAAAC 59.322 43.478 0.00 0.00 40.07 2.43
2954 3003 3.306364 CCAGGTGGACAACAACAACAAAA 60.306 43.478 0.00 0.00 40.07 2.44
2955 3004 2.232452 CCAGGTGGACAACAACAACAAA 59.768 45.455 0.00 0.00 40.07 2.83
2956 3005 1.821753 CCAGGTGGACAACAACAACAA 59.178 47.619 0.00 0.00 40.07 2.83
2957 3006 1.004862 TCCAGGTGGACAACAACAACA 59.995 47.619 0.00 0.00 40.07 3.33
2958 3007 1.757682 TCCAGGTGGACAACAACAAC 58.242 50.000 0.00 0.00 40.07 3.32
2968 3017 0.915872 ATGATGCAGGTCCAGGTGGA 60.916 55.000 0.00 0.00 43.08 4.02
2969 3018 0.839277 TATGATGCAGGTCCAGGTGG 59.161 55.000 0.00 0.00 0.00 4.61
2970 3019 2.945080 ATATGATGCAGGTCCAGGTG 57.055 50.000 0.00 0.00 0.00 4.00
3015 3064 3.577848 TGGTCACAGCTTAAAATGCCATT 59.422 39.130 0.00 0.00 0.00 3.16
3099 3232 3.285484 AGCATCATCTGTCATTCCAACC 58.715 45.455 0.00 0.00 0.00 3.77
3105 3238 5.353400 CAGTACACAAGCATCATCTGTCATT 59.647 40.000 0.00 0.00 0.00 2.57
3111 3244 5.411831 TCTTCAGTACACAAGCATCATCT 57.588 39.130 0.00 0.00 0.00 2.90
3198 3331 1.880027 CCACTTTGCTTCCTACCACAC 59.120 52.381 0.00 0.00 0.00 3.82
3240 3373 1.034292 GGCCAAGAAGTCCATCTGGC 61.034 60.000 0.00 2.74 40.18 4.85
3327 3460 6.377996 TCCCAGAATATTCCTTGAAACACATG 59.622 38.462 11.92 0.00 0.00 3.21
3425 3558 6.697641 ACTAAAGACCATTCCAAGGAACTA 57.302 37.500 3.19 0.00 38.49 2.24
3462 3595 6.430000 GTCAGTGGAGCTGGAAATAACTTAAA 59.570 38.462 0.00 0.00 45.08 1.52
3498 3631 5.010617 GCATAAGTTTGACTGGGAGGAAAAA 59.989 40.000 0.00 0.00 0.00 1.94
3579 3712 3.521531 TGTTCCACTATCAACTATGGCCA 59.478 43.478 8.56 8.56 31.87 5.36
3669 3802 9.959749 AAAATTTATCTACGAGTGAGAGATCTC 57.040 33.333 15.29 15.29 43.15 2.75
3713 3846 5.783100 ACTTGTTTGTCAAACTGCAAATG 57.217 34.783 24.94 11.70 41.90 2.32
3802 3935 4.202357 TGACCTGTAGTGCAGTCAGAATTT 60.202 41.667 17.44 4.44 43.55 1.82
3818 3951 2.842462 TGGCGAGTGGTGACCTGT 60.842 61.111 2.11 0.00 0.00 4.00
3832 3965 2.317530 AAATCGAACTAGCTCCTGGC 57.682 50.000 0.00 0.00 42.19 4.85
3846 3979 7.319380 CAGTGCAAATGAAAATGTCAAAAATCG 59.681 33.333 0.00 0.00 40.50 3.34
3974 4107 3.947612 AGACATACCTCTCCGTCCTTA 57.052 47.619 0.00 0.00 0.00 2.69
3997 4130 8.159344 ACTTACAATTTTTCTCCTGAGACAAG 57.841 34.615 0.00 0.00 37.14 3.16
4018 4151 4.614764 CGGCAATGCACACAACATAACTTA 60.615 41.667 7.79 0.00 0.00 2.24
4058 4191 1.134788 CCACCTTAGGTCGCCTTACTG 60.135 57.143 0.00 0.00 34.61 2.74
4059 4192 1.192428 CCACCTTAGGTCGCCTTACT 58.808 55.000 0.00 0.00 34.61 2.24
4064 4197 3.766691 TCGCCACCTTAGGTCGCC 61.767 66.667 15.00 0.00 36.48 5.54
4065 4198 2.508663 GTCGCCACCTTAGGTCGC 60.509 66.667 10.99 10.99 36.49 5.19
4066 4199 2.183555 GGTCGCCACCTTAGGTCG 59.816 66.667 0.00 3.21 40.00 4.79
4074 4207 3.718210 CTCGCCTTAGGTCGCCACC 62.718 68.421 9.56 0.00 44.19 4.61
4075 4208 2.202756 CTCGCCTTAGGTCGCCAC 60.203 66.667 9.56 0.00 0.00 5.01
4076 4209 4.143333 GCTCGCCTTAGGTCGCCA 62.143 66.667 9.56 0.00 0.00 5.69
4141 4274 2.435586 CAAGGCGCCCTGTCAGAG 60.436 66.667 26.15 0.00 32.13 3.35
4142 4275 4.704833 GCAAGGCGCCCTGTCAGA 62.705 66.667 26.15 0.00 32.13 3.27
4162 4295 0.902531 CCCTCCTTTGGACGCTTAGA 59.097 55.000 0.00 0.00 0.00 2.10
4204 4337 8.604035 TCGATTTGCATATAAGAACTTGTTCTC 58.396 33.333 15.27 4.13 0.00 2.87
4221 4354 5.895636 AATACAAATGGAGTCGATTTGCA 57.104 34.783 29.69 22.24 42.26 4.08
4258 4392 2.770164 TAACTGGAGCTGGCTCTTTC 57.230 50.000 19.92 6.49 42.38 2.62
4266 4400 3.706594 TGTAAGGGAGATAACTGGAGCTG 59.293 47.826 0.00 0.00 0.00 4.24
4347 4481 9.184523 CCCACCAACTATATCTGTTTAATCAAA 57.815 33.333 0.00 0.00 0.00 2.69
4384 4518 7.985184 AGTACAGTATCTTGTTTTCACAGTTGA 59.015 33.333 0.00 0.00 33.22 3.18
4391 4525 8.364894 TCTTGCTAGTACAGTATCTTGTTTTCA 58.635 33.333 0.00 0.00 32.56 2.69
4413 4547 6.749118 GCAAGTGCCAAACTATAGAAATCTTG 59.251 38.462 6.78 11.42 38.56 3.02
4415 4549 6.183347 AGCAAGTGCCAAACTATAGAAATCT 58.817 36.000 6.78 0.00 43.38 2.40
4433 4567 7.569240 ACTTTTAATAGATGAGCCTAGCAAGT 58.431 34.615 0.00 0.00 0.00 3.16
4573 4708 5.866633 GCATCACTAATGGTACTCTCATAGC 59.133 44.000 0.00 0.00 35.77 2.97
4658 4793 7.554118 CAGAGGGAGTATGTTACAACAAATCAT 59.446 37.037 0.00 0.00 43.03 2.45
4696 4833 8.633561 CCCTTGTTGAAATCTCTAAAAAGACTT 58.366 33.333 0.00 0.00 0.00 3.01
4697 4834 7.998964 TCCCTTGTTGAAATCTCTAAAAAGACT 59.001 33.333 0.00 0.00 0.00 3.24
4777 4915 8.361139 AGATTTCAATAAGAGACTACATACGGG 58.639 37.037 0.00 0.00 0.00 5.28
4815 4953 9.417561 CATATACTCCCTCCGTTCCTAAATATA 57.582 37.037 0.00 0.00 0.00 0.86
4838 4976 8.458052 CACATCTGCCTTTTGTATACAAACATA 58.542 33.333 26.72 15.94 44.56 2.29
4848 4986 5.334802 CGAAATGACACATCTGCCTTTTGTA 60.335 40.000 0.00 0.00 0.00 2.41
4902 5048 5.523916 CCGCAAAACAGCTACAGTTCTATAT 59.476 40.000 0.00 0.00 0.00 0.86
4903 5049 4.868171 CCGCAAAACAGCTACAGTTCTATA 59.132 41.667 0.00 0.00 0.00 1.31
4930 5076 7.450903 AGCAAATGAGATGAGATGATATCACA 58.549 34.615 7.78 2.01 34.47 3.58
4937 5083 7.771826 TGAACATTAGCAAATGAGATGAGATGA 59.228 33.333 5.18 0.00 44.50 2.92
4938 5084 7.927048 TGAACATTAGCAAATGAGATGAGATG 58.073 34.615 5.18 0.00 44.50 2.90
4939 5085 7.228906 CCTGAACATTAGCAAATGAGATGAGAT 59.771 37.037 5.18 0.00 44.50 2.75
4940 5086 6.541278 CCTGAACATTAGCAAATGAGATGAGA 59.459 38.462 5.18 0.00 44.50 3.27
4941 5087 6.238676 CCCTGAACATTAGCAAATGAGATGAG 60.239 42.308 5.18 0.00 44.50 2.90
5017 5163 4.685169 AAGCACTCACGTCCAATAATTG 57.315 40.909 0.00 0.00 0.00 2.32
5039 5185 6.962182 TGAGAGAACACATATCCCAAGATTT 58.038 36.000 0.00 0.00 33.67 2.17
5044 5190 6.013379 AGACTTTGAGAGAACACATATCCCAA 60.013 38.462 0.00 0.00 0.00 4.12
5095 5242 0.464036 TCTGCATCCACGGATACCAC 59.536 55.000 0.00 0.00 32.93 4.16
5204 5351 9.594478 GGACAAAGGAAAATGTCTTTCTTTTTA 57.406 29.630 5.95 0.00 44.20 1.52
5214 5361 6.279882 TGTTTCATGGACAAAGGAAAATGTC 58.720 36.000 0.00 0.00 44.07 3.06
5221 5368 5.563867 GCGTTAATGTTTCATGGACAAAGGA 60.564 40.000 6.87 0.00 0.00 3.36
5222 5369 4.621034 GCGTTAATGTTTCATGGACAAAGG 59.379 41.667 6.87 5.42 0.00 3.11
5223 5370 5.460646 AGCGTTAATGTTTCATGGACAAAG 58.539 37.500 6.87 0.00 0.00 2.77
5224 5371 5.009110 TGAGCGTTAATGTTTCATGGACAAA 59.991 36.000 6.87 0.00 0.00 2.83
5225 5372 4.517075 TGAGCGTTAATGTTTCATGGACAA 59.483 37.500 6.87 0.00 0.00 3.18
5226 5373 4.068599 TGAGCGTTAATGTTTCATGGACA 58.931 39.130 5.50 5.50 0.00 4.02
5227 5374 4.678509 TGAGCGTTAATGTTTCATGGAC 57.321 40.909 0.00 0.00 0.00 4.02
5415 5572 5.290386 GCAAGTAGCCTATGTAAGTTCGAT 58.710 41.667 0.00 0.00 37.23 3.59
5460 5617 0.832135 ACACGGTGGAGATGGTCAGT 60.832 55.000 13.48 0.00 0.00 3.41
5549 5706 1.939934 CTTCCGAAACAGCTGACACAA 59.060 47.619 23.35 4.20 0.00 3.33
5551 5708 1.261619 CACTTCCGAAACAGCTGACAC 59.738 52.381 23.35 9.55 0.00 3.67
5570 5727 0.034337 ACGCTTAAACTCGGGAAGCA 59.966 50.000 7.84 0.00 44.71 3.91
5594 5751 1.279271 GCTGGTGGAGTGGAGTTGTAT 59.721 52.381 0.00 0.00 0.00 2.29
5597 5754 1.669115 CGCTGGTGGAGTGGAGTTG 60.669 63.158 0.00 0.00 0.00 3.16
5637 5796 4.921515 TCAGTGTTCTTTTAAGATCGACGG 59.078 41.667 0.00 0.00 34.49 4.79
5642 5801 6.128795 CGGTCTGTCAGTGTTCTTTTAAGATC 60.129 42.308 0.00 0.00 34.49 2.75
5649 5811 1.485066 ACCGGTCTGTCAGTGTTCTTT 59.515 47.619 0.00 0.00 0.00 2.52
5665 5833 0.234884 GACGTTTCTCAGCAAACCGG 59.765 55.000 0.00 0.00 33.37 5.28
5736 5907 1.745320 TATCCTCGCTTCCGGCTTCC 61.745 60.000 0.00 0.00 39.13 3.46
5746 5917 2.175931 TCCTCCTCTTCTTATCCTCGCT 59.824 50.000 0.00 0.00 0.00 4.93
5747 5918 2.588620 TCCTCCTCTTCTTATCCTCGC 58.411 52.381 0.00 0.00 0.00 5.03
5748 5919 4.465886 TCTTCCTCCTCTTCTTATCCTCG 58.534 47.826 0.00 0.00 0.00 4.63
5756 5927 1.181786 CACGCTCTTCCTCCTCTTCT 58.818 55.000 0.00 0.00 0.00 2.85
5776 5947 1.153568 CGATGGATGACTGCACGGT 60.154 57.895 0.00 0.00 0.00 4.83
5791 5962 2.369394 GAAAAAGGGACTGCCATCGAT 58.631 47.619 0.00 0.00 40.86 3.59
5866 6065 4.996434 AGTGCAGAGTGCCCGTGC 62.996 66.667 0.00 0.00 44.23 5.34
5868 6067 4.996434 GCAGTGCAGAGTGCCCGT 62.996 66.667 11.09 0.00 44.23 5.28
5870 6069 3.360340 GTGCAGTGCAGAGTGCCC 61.360 66.667 20.42 0.14 46.58 5.36
5871 6070 3.360340 GGTGCAGTGCAGAGTGCC 61.360 66.667 20.42 12.26 46.58 5.01
5953 6152 2.432456 GACGGTCGTGCATGCAGA 60.432 61.111 23.41 17.44 0.00 4.26
5954 6153 3.842126 CGACGGTCGTGCATGCAG 61.842 66.667 23.41 15.31 34.72 4.41
5977 6176 2.426738 CCTCTCCTCTCATGTGACTGAC 59.573 54.545 0.00 0.00 0.00 3.51
5978 6177 2.732763 CCTCTCCTCTCATGTGACTGA 58.267 52.381 0.00 0.00 0.00 3.41
5979 6178 1.136695 GCCTCTCCTCTCATGTGACTG 59.863 57.143 0.00 0.00 0.00 3.51
5980 6179 1.484038 GCCTCTCCTCTCATGTGACT 58.516 55.000 0.00 0.00 0.00 3.41
5981 6180 0.463620 GGCCTCTCCTCTCATGTGAC 59.536 60.000 0.00 0.00 0.00 3.67
5982 6181 0.337773 AGGCCTCTCCTCTCATGTGA 59.662 55.000 0.00 0.00 43.20 3.58
5983 6182 2.913463 AGGCCTCTCCTCTCATGTG 58.087 57.895 0.00 0.00 43.20 3.21
6220 6441 2.385803 GCCTAGGTAGCTAGTGTTGGA 58.614 52.381 23.74 0.00 0.00 3.53
6272 6493 1.513160 GAGTGACGAGTGAGCGAGC 60.513 63.158 0.00 0.00 34.83 5.03
6276 6497 0.528017 TGGATGAGTGACGAGTGAGC 59.472 55.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.