Multiple sequence alignment - TraesCS6B01G331800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G331800 chr6B 100.000 2315 0 0 1 2315 583191719 583189405 0.000000e+00 4276.0
1 TraesCS6B01G331800 chr6B 86.598 97 7 2 1976 2066 583189711 583189615 4.070000e-18 102.0
2 TraesCS6B01G331800 chr6D 93.253 1734 88 13 3 1714 389608390 389606664 0.000000e+00 2527.0
3 TraesCS6B01G331800 chr6D 91.935 124 9 1 1697 1819 389606645 389606522 3.060000e-39 172.0
4 TraesCS6B01G331800 chr6A 92.356 1609 88 12 286 1872 535994786 535993191 0.000000e+00 2257.0
5 TraesCS6B01G331800 chr6A 91.855 221 8 5 3 215 535995003 535994785 1.340000e-77 300.0
6 TraesCS6B01G331800 chr4D 82.312 995 145 20 658 1634 31762690 31763671 0.000000e+00 833.0
7 TraesCS6B01G331800 chr4D 86.538 156 21 0 1804 1959 55271205 55271360 3.060000e-39 172.0
8 TraesCS6B01G331800 chr4D 84.404 109 16 1 1872 1979 15550524 15550416 3.150000e-19 106.0
9 TraesCS6B01G331800 chr4B 83.483 890 112 23 754 1634 45206075 45206938 0.000000e+00 797.0
10 TraesCS6B01G331800 chr4B 88.764 89 5 3 214 298 172508729 172508816 1.130000e-18 104.0
11 TraesCS6B01G331800 chr4B 78.082 146 29 3 1834 1977 102969700 102969844 3.170000e-14 89.8
12 TraesCS6B01G331800 chr4A 80.561 998 147 31 668 1638 571031940 571030963 0.000000e+00 725.0
13 TraesCS6B01G331800 chr4A 89.247 93 3 5 215 305 683423534 683423447 2.430000e-20 110.0
14 TraesCS6B01G331800 chr4A 88.506 87 5 4 201 287 621127573 621127654 1.460000e-17 100.0
15 TraesCS6B01G331800 chr4A 86.170 94 7 5 214 304 683417920 683417830 1.890000e-16 97.1
16 TraesCS6B01G331800 chr2D 82.353 170 29 1 1803 1971 142062662 142062831 1.850000e-31 147.0
17 TraesCS6B01G331800 chr3D 83.673 147 23 1 1834 1979 532762092 532762238 1.120000e-28 137.0
18 TraesCS6B01G331800 chr3D 82.667 150 23 3 1807 1954 159475517 159475369 1.870000e-26 130.0
19 TraesCS6B01G331800 chr2B 95.946 74 2 1 214 287 417500765 417500837 4.040000e-23 119.0
20 TraesCS6B01G331800 chr5B 94.595 74 2 1 214 287 244748290 244748361 1.880000e-21 113.0
21 TraesCS6B01G331800 chr7B 85.437 103 15 0 1876 1978 612250803 612250701 8.750000e-20 108.0
22 TraesCS6B01G331800 chr3A 89.157 83 8 1 205 287 101905560 101905479 4.070000e-18 102.0
23 TraesCS6B01G331800 chr3A 96.970 33 1 0 5 37 383695568 383695536 3.210000e-04 56.5
24 TraesCS6B01G331800 chr3A 90.244 41 4 0 1877 1917 595920728 595920688 1.000000e-03 54.7
25 TraesCS6B01G331800 chr2A 89.286 84 6 1 214 294 729674188 729674105 4.070000e-18 102.0
26 TraesCS6B01G331800 chr1D 88.136 59 6 1 1807 1864 332207357 332207415 4.130000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G331800 chr6B 583189405 583191719 2314 True 2189.0 4276 93.2990 1 2315 2 chr6B.!!$R1 2314
1 TraesCS6B01G331800 chr6D 389606522 389608390 1868 True 1349.5 2527 92.5940 3 1819 2 chr6D.!!$R1 1816
2 TraesCS6B01G331800 chr6A 535993191 535995003 1812 True 1278.5 2257 92.1055 3 1872 2 chr6A.!!$R1 1869
3 TraesCS6B01G331800 chr4D 31762690 31763671 981 False 833.0 833 82.3120 658 1634 1 chr4D.!!$F1 976
4 TraesCS6B01G331800 chr4B 45206075 45206938 863 False 797.0 797 83.4830 754 1634 1 chr4B.!!$F1 880
5 TraesCS6B01G331800 chr4A 571030963 571031940 977 True 725.0 725 80.5610 668 1638 1 chr4A.!!$R1 970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 560 0.242017 AAATTCTCGGTGCTTGCAGC 59.758 50.0 13.97 13.97 42.82 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 2617 0.035056 AGCTTGAACGCTAATGGGCT 60.035 50.0 0.0 0.0 38.76 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.461992 AAATGGCGAATTTACGTATCCG 57.538 40.909 0.00 0.00 36.69 4.18
116 117 8.750515 TGTTTTGAGATAAGATAATCATGCCA 57.249 30.769 0.00 0.00 0.00 4.92
129 130 1.276138 TCATGCCATCGTGAACTCTGT 59.724 47.619 0.00 0.00 35.43 3.41
222 231 6.444704 TCATTCCTTCATAGTTACTCCCTCT 58.555 40.000 0.00 0.00 0.00 3.69
240 249 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
241 250 5.485353 CCCTCTGTCCCATAATATAAGAGCA 59.515 44.000 0.00 0.00 0.00 4.26
242 251 6.157645 CCCTCTGTCCCATAATATAAGAGCAT 59.842 42.308 0.00 0.00 0.00 3.79
450 470 6.603997 AGATGACGTTACAAGATAGACTCCTT 59.396 38.462 0.00 0.00 0.00 3.36
505 525 7.531716 TGAAAATAATCGATTTAAGCACGGTT 58.468 30.769 17.19 0.00 36.71 4.44
533 553 9.901724 CGTATTTATATATCAAATTCTCGGTGC 57.098 33.333 0.00 0.00 0.00 5.01
537 557 2.927553 ATCAAATTCTCGGTGCTTGC 57.072 45.000 0.00 0.00 0.00 4.01
538 558 1.603456 TCAAATTCTCGGTGCTTGCA 58.397 45.000 0.00 0.00 0.00 4.08
539 559 1.536766 TCAAATTCTCGGTGCTTGCAG 59.463 47.619 0.00 0.00 0.00 4.41
540 560 0.242017 AAATTCTCGGTGCTTGCAGC 59.758 50.000 13.97 13.97 42.82 5.25
553 573 4.401525 GCTTGCAGCATGATCATACTAC 57.598 45.455 8.15 3.39 41.89 2.73
554 574 4.063689 GCTTGCAGCATGATCATACTACT 58.936 43.478 8.15 1.00 41.89 2.57
555 575 4.083961 GCTTGCAGCATGATCATACTACTG 60.084 45.833 8.15 13.86 41.89 2.74
556 576 4.677673 TGCAGCATGATCATACTACTGT 57.322 40.909 19.84 0.00 39.69 3.55
557 577 5.027293 TGCAGCATGATCATACTACTGTT 57.973 39.130 19.84 3.17 39.69 3.16
558 578 6.160576 TGCAGCATGATCATACTACTGTTA 57.839 37.500 19.84 11.86 39.69 2.41
559 579 6.762333 TGCAGCATGATCATACTACTGTTAT 58.238 36.000 19.84 0.00 39.69 1.89
560 580 7.219322 TGCAGCATGATCATACTACTGTTATT 58.781 34.615 19.84 0.00 39.69 1.40
561 581 7.716560 TGCAGCATGATCATACTACTGTTATTT 59.283 33.333 19.84 0.00 39.69 1.40
562 582 8.562892 GCAGCATGATCATACTACTGTTATTTT 58.437 33.333 19.84 0.00 39.69 1.82
585 605 7.795431 TTTTATGTAAGCGCTCAATTTTCTG 57.205 32.000 12.06 0.00 0.00 3.02
586 606 6.735678 TTATGTAAGCGCTCAATTTTCTGA 57.264 33.333 12.06 0.00 0.00 3.27
587 607 5.824904 ATGTAAGCGCTCAATTTTCTGAT 57.175 34.783 12.06 0.00 0.00 2.90
588 608 4.973396 TGTAAGCGCTCAATTTTCTGATG 58.027 39.130 12.06 0.00 0.00 3.07
589 609 4.694982 TGTAAGCGCTCAATTTTCTGATGA 59.305 37.500 12.06 0.00 0.00 2.92
590 610 4.771590 AAGCGCTCAATTTTCTGATGAA 57.228 36.364 12.06 0.00 0.00 2.57
591 611 4.978083 AGCGCTCAATTTTCTGATGAAT 57.022 36.364 2.64 0.00 31.56 2.57
592 612 4.918037 AGCGCTCAATTTTCTGATGAATC 58.082 39.130 2.64 0.00 31.56 2.52
593 613 4.639310 AGCGCTCAATTTTCTGATGAATCT 59.361 37.500 2.64 0.00 31.56 2.40
594 614 5.125097 AGCGCTCAATTTTCTGATGAATCTT 59.875 36.000 2.64 0.00 31.56 2.40
595 615 5.454877 GCGCTCAATTTTCTGATGAATCTTC 59.545 40.000 0.00 0.00 31.56 2.87
596 616 6.677431 GCGCTCAATTTTCTGATGAATCTTCT 60.677 38.462 0.00 0.00 31.56 2.85
597 617 7.466455 GCGCTCAATTTTCTGATGAATCTTCTA 60.466 37.037 0.00 0.00 31.56 2.10
598 618 8.557864 CGCTCAATTTTCTGATGAATCTTCTAT 58.442 33.333 0.00 0.00 31.56 1.98
599 619 9.881529 GCTCAATTTTCTGATGAATCTTCTATC 57.118 33.333 0.00 0.00 31.56 2.08
603 623 9.571816 AATTTTCTGATGAATCTTCTATCCTCC 57.428 33.333 0.00 0.00 31.56 4.30
604 624 7.927683 TTTCTGATGAATCTTCTATCCTCCT 57.072 36.000 0.00 0.00 31.56 3.69
605 625 7.927683 TTCTGATGAATCTTCTATCCTCCTT 57.072 36.000 0.00 0.00 0.00 3.36
606 626 7.927683 TCTGATGAATCTTCTATCCTCCTTT 57.072 36.000 0.00 0.00 0.00 3.11
607 627 7.733969 TCTGATGAATCTTCTATCCTCCTTTG 58.266 38.462 0.00 0.00 0.00 2.77
608 628 7.346698 TCTGATGAATCTTCTATCCTCCTTTGT 59.653 37.037 0.00 0.00 0.00 2.83
609 629 7.865820 TGATGAATCTTCTATCCTCCTTTGTT 58.134 34.615 0.00 0.00 0.00 2.83
610 630 8.331740 TGATGAATCTTCTATCCTCCTTTGTTT 58.668 33.333 0.00 0.00 0.00 2.83
611 631 9.838339 GATGAATCTTCTATCCTCCTTTGTTTA 57.162 33.333 0.00 0.00 0.00 2.01
612 632 9.844257 ATGAATCTTCTATCCTCCTTTGTTTAG 57.156 33.333 0.00 0.00 0.00 1.85
613 633 9.046846 TGAATCTTCTATCCTCCTTTGTTTAGA 57.953 33.333 0.00 0.00 0.00 2.10
614 634 9.541143 GAATCTTCTATCCTCCTTTGTTTAGAG 57.459 37.037 0.00 0.00 0.00 2.43
615 635 8.846423 ATCTTCTATCCTCCTTTGTTTAGAGA 57.154 34.615 0.00 0.00 0.00 3.10
616 636 8.846423 TCTTCTATCCTCCTTTGTTTAGAGAT 57.154 34.615 0.00 0.00 0.00 2.75
617 637 9.937876 TCTTCTATCCTCCTTTGTTTAGAGATA 57.062 33.333 0.00 0.00 0.00 1.98
648 668 8.682936 ATTAGGCAGTTATGAACTCTATTTGG 57.317 34.615 0.00 0.00 40.46 3.28
649 669 6.067217 AGGCAGTTATGAACTCTATTTGGT 57.933 37.500 0.00 0.00 40.46 3.67
650 670 5.882557 AGGCAGTTATGAACTCTATTTGGTG 59.117 40.000 0.00 0.00 40.46 4.17
651 671 5.066505 GGCAGTTATGAACTCTATTTGGTGG 59.933 44.000 0.00 0.00 40.46 4.61
652 672 5.648092 GCAGTTATGAACTCTATTTGGTGGT 59.352 40.000 0.00 0.00 40.46 4.16
653 673 6.151144 GCAGTTATGAACTCTATTTGGTGGTT 59.849 38.462 0.00 0.00 40.46 3.67
654 674 7.530010 CAGTTATGAACTCTATTTGGTGGTTG 58.470 38.462 0.00 0.00 40.46 3.77
655 675 6.151144 AGTTATGAACTCTATTTGGTGGTTGC 59.849 38.462 0.00 0.00 37.02 4.17
656 676 4.098914 TGAACTCTATTTGGTGGTTGCT 57.901 40.909 0.00 0.00 0.00 3.91
665 685 0.482446 TGGTGGTTGCTCCCATCTTT 59.518 50.000 6.97 0.00 36.51 2.52
666 686 0.890683 GGTGGTTGCTCCCATCTTTG 59.109 55.000 0.00 0.00 36.74 2.77
672 692 4.263905 TGGTTGCTCCCATCTTTGATAGTT 60.264 41.667 0.00 0.00 34.77 2.24
680 700 5.488919 TCCCATCTTTGATAGTTGAGGAACT 59.511 40.000 0.00 0.00 44.90 3.01
686 706 7.603651 TCTTTGATAGTTGAGGAACTGAGTAC 58.396 38.462 0.00 0.00 42.66 2.73
688 708 2.726832 AGTTGAGGAACTGAGTACGC 57.273 50.000 0.00 0.00 41.12 4.42
696 716 2.029290 GGAACTGAGTACGCCTTCAGAA 60.029 50.000 14.78 0.00 34.59 3.02
699 719 3.851098 ACTGAGTACGCCTTCAGAATTC 58.149 45.455 14.78 0.00 34.59 2.17
707 727 2.159599 CGCCTTCAGAATTCAGAGTTGC 60.160 50.000 8.44 7.98 0.00 4.17
717 737 6.921857 CAGAATTCAGAGTTGCTGTTTTCATT 59.078 34.615 8.44 0.00 45.14 2.57
720 740 7.750229 ATTCAGAGTTGCTGTTTTCATTCTA 57.250 32.000 0.00 0.00 45.14 2.10
721 741 7.750229 TTCAGAGTTGCTGTTTTCATTCTAT 57.250 32.000 0.00 0.00 45.14 1.98
723 743 9.453572 TTCAGAGTTGCTGTTTTCATTCTATAT 57.546 29.630 0.00 0.00 45.14 0.86
747 769 7.485418 TTTATTTCAGTAAGAGTTTGACGCA 57.515 32.000 0.00 0.00 0.00 5.24
749 771 8.766000 TTATTTCAGTAAGAGTTTGACGCATA 57.234 30.769 0.00 0.00 0.00 3.14
751 773 8.942338 ATTTCAGTAAGAGTTTGACGCATATA 57.058 30.769 0.00 0.00 0.00 0.86
752 774 8.942338 TTTCAGTAAGAGTTTGACGCATATAT 57.058 30.769 0.00 0.00 0.00 0.86
753 775 8.942338 TTCAGTAAGAGTTTGACGCATATATT 57.058 30.769 0.00 0.00 0.00 1.28
754 776 8.942338 TCAGTAAGAGTTTGACGCATATATTT 57.058 30.769 0.00 0.00 0.00 1.40
755 777 9.031360 TCAGTAAGAGTTTGACGCATATATTTC 57.969 33.333 0.00 0.00 0.00 2.17
756 778 8.817100 CAGTAAGAGTTTGACGCATATATTTCA 58.183 33.333 0.00 0.00 0.00 2.69
831 1213 5.946298 TCTTGCAATGCTCTGAAAATAGTG 58.054 37.500 6.82 0.00 0.00 2.74
884 1267 3.242549 TCTCAGTACTTGCAGCATGAG 57.757 47.619 14.99 14.71 39.69 2.90
885 1268 2.564504 TCTCAGTACTTGCAGCATGAGT 59.435 45.455 18.34 12.53 39.69 3.41
911 1296 7.988599 TGTACTCCTGTTTGTTTACATTAGTGT 59.011 33.333 0.00 0.00 42.39 3.55
938 1324 6.581171 ATTTCTGATGAACCTTTTGTCCTC 57.419 37.500 0.00 0.00 31.02 3.71
978 1365 7.703058 AGTCGGAAACAAATATTTCATCCTT 57.297 32.000 15.95 1.32 39.85 3.36
982 1369 7.177568 TCGGAAACAAATATTTCATCCTTGGAA 59.822 33.333 15.95 0.00 39.85 3.53
1023 1410 2.361119 GGAAGCCAAGTTCTTTCGGTTT 59.639 45.455 0.00 0.00 0.00 3.27
1245 1632 3.630312 GCAAACCTCCAGAAGTGTACAAA 59.370 43.478 0.00 0.00 0.00 2.83
1287 1674 3.057104 TCGACGAGGTCATAAAGCTGAAA 60.057 43.478 0.00 0.00 35.33 2.69
1356 1747 7.337942 CCCATTTGACTTCTAGCTTGTTTAGAT 59.662 37.037 0.00 0.00 0.00 1.98
1357 1748 9.383519 CCATTTGACTTCTAGCTTGTTTAGATA 57.616 33.333 0.00 0.00 0.00 1.98
1408 1806 0.168128 GGTTTTCTCGTGCCGGATTG 59.832 55.000 5.05 0.00 0.00 2.67
1423 1824 0.749454 GATTGTGGCTAGCCCCAGTG 60.749 60.000 30.81 0.00 35.05 3.66
1572 1977 5.104527 TGGCTAGATGCATGTAACCTACTTT 60.105 40.000 20.44 0.00 45.15 2.66
1583 1988 5.741011 TGTAACCTACTTTCAATAGCCCAG 58.259 41.667 0.00 0.00 0.00 4.45
1772 2215 1.799403 GATGAGCTTGCATCCGAGATG 59.201 52.381 4.41 8.90 38.95 2.90
1786 2229 1.998315 CGAGATGGAAAGAGCACACAG 59.002 52.381 0.00 0.00 0.00 3.66
1815 2262 7.363443 GCTTTTTAACTTATAGGACAATGCCCA 60.363 37.037 0.00 0.00 0.00 5.36
1828 2275 2.273912 TGCCCATGCATTGCAACGA 61.274 52.632 16.46 0.00 44.23 3.85
1831 2278 0.099968 CCCATGCATTGCAACGAGAG 59.900 55.000 16.46 1.99 43.62 3.20
1832 2279 0.099968 CCATGCATTGCAACGAGAGG 59.900 55.000 16.46 7.23 43.62 3.69
1842 2289 6.751888 GCATTGCAACGAGAGGTAAATATTTT 59.248 34.615 5.91 0.00 0.00 1.82
1870 2317 8.952278 GTATGTTAGTTTGTGATTACCCATTCA 58.048 33.333 0.00 0.00 0.00 2.57
1871 2318 8.593945 ATGTTAGTTTGTGATTACCCATTCAT 57.406 30.769 0.00 0.00 0.00 2.57
1872 2319 9.693739 ATGTTAGTTTGTGATTACCCATTCATA 57.306 29.630 0.00 0.00 0.00 2.15
1873 2320 9.693739 TGTTAGTTTGTGATTACCCATTCATAT 57.306 29.630 0.00 0.00 0.00 1.78
1879 2326 9.979578 TTTGTGATTACCCATTCATATTAATGC 57.020 29.630 4.37 0.00 35.85 3.56
1880 2327 7.815641 TGTGATTACCCATTCATATTAATGCG 58.184 34.615 4.37 0.00 35.85 4.73
1881 2328 7.663493 TGTGATTACCCATTCATATTAATGCGA 59.337 33.333 4.37 0.00 35.85 5.10
1882 2329 8.677300 GTGATTACCCATTCATATTAATGCGAT 58.323 33.333 4.37 0.00 35.85 4.58
1883 2330 9.241919 TGATTACCCATTCATATTAATGCGATT 57.758 29.630 4.37 0.00 35.85 3.34
1884 2331 9.507280 GATTACCCATTCATATTAATGCGATTG 57.493 33.333 4.37 1.88 35.85 2.67
1885 2332 6.899393 ACCCATTCATATTAATGCGATTGT 57.101 33.333 4.37 0.00 35.85 2.71
1886 2333 6.913170 ACCCATTCATATTAATGCGATTGTC 58.087 36.000 4.37 0.00 35.85 3.18
1887 2334 6.716628 ACCCATTCATATTAATGCGATTGTCT 59.283 34.615 4.37 0.00 35.85 3.41
1888 2335 7.882791 ACCCATTCATATTAATGCGATTGTCTA 59.117 33.333 4.37 0.00 35.85 2.59
1889 2336 8.729756 CCCATTCATATTAATGCGATTGTCTAA 58.270 33.333 4.37 0.00 35.85 2.10
1914 2361 9.801873 AAATAAATGTTTATCAAATCCCGTCAG 57.198 29.630 0.00 0.00 32.46 3.51
1915 2362 6.834168 AAATGTTTATCAAATCCCGTCAGT 57.166 33.333 0.00 0.00 0.00 3.41
1916 2363 5.818136 ATGTTTATCAAATCCCGTCAGTG 57.182 39.130 0.00 0.00 0.00 3.66
1917 2364 4.900684 TGTTTATCAAATCCCGTCAGTGA 58.099 39.130 0.00 0.00 0.00 3.41
1918 2365 5.496556 TGTTTATCAAATCCCGTCAGTGAT 58.503 37.500 0.00 0.00 33.63 3.06
1919 2366 5.943416 TGTTTATCAAATCCCGTCAGTGATT 59.057 36.000 0.00 0.00 32.72 2.57
1920 2367 6.432783 TGTTTATCAAATCCCGTCAGTGATTT 59.567 34.615 0.00 0.00 40.79 2.17
1921 2368 7.608376 TGTTTATCAAATCCCGTCAGTGATTTA 59.392 33.333 0.00 0.00 38.73 1.40
1922 2369 7.548196 TTATCAAATCCCGTCAGTGATTTAC 57.452 36.000 0.00 0.00 38.73 2.01
1923 2370 4.258543 TCAAATCCCGTCAGTGATTTACC 58.741 43.478 0.00 0.00 38.73 2.85
1924 2371 4.019681 TCAAATCCCGTCAGTGATTTACCT 60.020 41.667 0.00 0.00 38.73 3.08
1925 2372 4.569719 AATCCCGTCAGTGATTTACCTT 57.430 40.909 0.00 0.00 0.00 3.50
1926 2373 5.687166 AATCCCGTCAGTGATTTACCTTA 57.313 39.130 0.00 0.00 0.00 2.69
1927 2374 4.460948 TCCCGTCAGTGATTTACCTTAC 57.539 45.455 0.00 0.00 0.00 2.34
1928 2375 3.833650 TCCCGTCAGTGATTTACCTTACA 59.166 43.478 0.00 0.00 0.00 2.41
1929 2376 4.081862 TCCCGTCAGTGATTTACCTTACAG 60.082 45.833 0.00 0.00 0.00 2.74
1930 2377 4.322499 CCCGTCAGTGATTTACCTTACAGT 60.322 45.833 0.00 0.00 0.00 3.55
1931 2378 5.235516 CCGTCAGTGATTTACCTTACAGTT 58.764 41.667 0.00 0.00 0.00 3.16
1932 2379 5.699458 CCGTCAGTGATTTACCTTACAGTTT 59.301 40.000 0.00 0.00 0.00 2.66
1933 2380 6.347402 CCGTCAGTGATTTACCTTACAGTTTG 60.347 42.308 0.00 0.00 0.00 2.93
1934 2381 6.422701 CGTCAGTGATTTACCTTACAGTTTGA 59.577 38.462 0.00 0.00 0.00 2.69
1935 2382 7.117812 CGTCAGTGATTTACCTTACAGTTTGAT 59.882 37.037 0.00 0.00 0.00 2.57
1936 2383 8.230486 GTCAGTGATTTACCTTACAGTTTGATG 58.770 37.037 0.00 0.00 0.00 3.07
1937 2384 7.390440 TCAGTGATTTACCTTACAGTTTGATGG 59.610 37.037 0.00 0.00 0.00 3.51
1938 2385 6.659242 AGTGATTTACCTTACAGTTTGATGGG 59.341 38.462 0.00 0.00 0.00 4.00
1939 2386 6.657541 GTGATTTACCTTACAGTTTGATGGGA 59.342 38.462 0.00 0.00 0.00 4.37
1940 2387 7.175990 GTGATTTACCTTACAGTTTGATGGGAA 59.824 37.037 0.00 0.00 0.00 3.97
1941 2388 7.393234 TGATTTACCTTACAGTTTGATGGGAAG 59.607 37.037 0.00 0.00 0.00 3.46
1942 2389 4.724279 ACCTTACAGTTTGATGGGAAGT 57.276 40.909 0.00 0.00 0.00 3.01
1943 2390 5.061721 ACCTTACAGTTTGATGGGAAGTT 57.938 39.130 0.00 0.00 0.00 2.66
1944 2391 5.454966 ACCTTACAGTTTGATGGGAAGTTT 58.545 37.500 0.00 0.00 0.00 2.66
1945 2392 5.301805 ACCTTACAGTTTGATGGGAAGTTTG 59.698 40.000 0.00 0.00 0.00 2.93
1946 2393 5.278957 CCTTACAGTTTGATGGGAAGTTTGG 60.279 44.000 0.00 0.00 0.00 3.28
1947 2394 3.642141 ACAGTTTGATGGGAAGTTTGGT 58.358 40.909 0.00 0.00 0.00 3.67
1948 2395 4.798882 ACAGTTTGATGGGAAGTTTGGTA 58.201 39.130 0.00 0.00 0.00 3.25
1949 2396 5.205056 ACAGTTTGATGGGAAGTTTGGTAA 58.795 37.500 0.00 0.00 0.00 2.85
1950 2397 5.301805 ACAGTTTGATGGGAAGTTTGGTAAG 59.698 40.000 0.00 0.00 0.00 2.34
1951 2398 5.301805 CAGTTTGATGGGAAGTTTGGTAAGT 59.698 40.000 0.00 0.00 0.00 2.24
1952 2399 6.488683 CAGTTTGATGGGAAGTTTGGTAAGTA 59.511 38.462 0.00 0.00 0.00 2.24
1953 2400 7.013846 CAGTTTGATGGGAAGTTTGGTAAGTAA 59.986 37.037 0.00 0.00 0.00 2.24
1954 2401 7.562088 AGTTTGATGGGAAGTTTGGTAAGTAAA 59.438 33.333 0.00 0.00 0.00 2.01
1955 2402 8.364894 GTTTGATGGGAAGTTTGGTAAGTAAAT 58.635 33.333 0.00 0.00 0.00 1.40
1956 2403 8.485578 TTGATGGGAAGTTTGGTAAGTAAATT 57.514 30.769 0.00 0.00 0.00 1.82
1957 2404 9.589461 TTGATGGGAAGTTTGGTAAGTAAATTA 57.411 29.630 0.00 0.00 0.00 1.40
1958 2405 9.589461 TGATGGGAAGTTTGGTAAGTAAATTAA 57.411 29.630 0.00 0.00 0.00 1.40
1960 2407 9.816787 ATGGGAAGTTTGGTAAGTAAATTAAGA 57.183 29.630 0.00 0.00 0.00 2.10
1961 2408 9.816787 TGGGAAGTTTGGTAAGTAAATTAAGAT 57.183 29.630 0.00 0.00 0.00 2.40
1974 2421 9.995003 AAGTAAATTAAGATGAAATTGGTGCAA 57.005 25.926 0.00 0.00 0.00 4.08
1975 2422 9.995003 AGTAAATTAAGATGAAATTGGTGCAAA 57.005 25.926 0.00 0.00 0.00 3.68
1978 2425 7.910441 ATTAAGATGAAATTGGTGCAAAAGG 57.090 32.000 0.00 0.00 0.00 3.11
1979 2426 5.549742 AAGATGAAATTGGTGCAAAAGGA 57.450 34.783 0.00 0.00 0.00 3.36
1980 2427 5.750352 AGATGAAATTGGTGCAAAAGGAT 57.250 34.783 0.00 0.00 0.00 3.24
1981 2428 5.484715 AGATGAAATTGGTGCAAAAGGATG 58.515 37.500 0.00 0.00 0.00 3.51
1982 2429 3.401182 TGAAATTGGTGCAAAAGGATGC 58.599 40.909 0.00 0.00 46.58 3.91
1992 2439 3.378339 GCAAAAGGATGCATCACATAGC 58.622 45.455 27.25 19.89 45.70 2.97
1993 2440 3.067742 GCAAAAGGATGCATCACATAGCT 59.932 43.478 27.25 11.63 45.70 3.32
1994 2441 4.792057 GCAAAAGGATGCATCACATAGCTC 60.792 45.833 27.25 8.02 45.70 4.09
1995 2442 3.851458 AAGGATGCATCACATAGCTCA 57.149 42.857 27.25 0.00 39.84 4.26
1996 2443 3.851458 AGGATGCATCACATAGCTCAA 57.149 42.857 27.25 0.00 39.84 3.02
1997 2444 4.160642 AGGATGCATCACATAGCTCAAA 57.839 40.909 27.25 0.00 39.84 2.69
1998 2445 4.529897 AGGATGCATCACATAGCTCAAAA 58.470 39.130 27.25 0.00 39.84 2.44
1999 2446 4.579340 AGGATGCATCACATAGCTCAAAAG 59.421 41.667 27.25 0.00 39.84 2.27
2000 2447 4.577693 GGATGCATCACATAGCTCAAAAGA 59.422 41.667 27.25 0.00 39.84 2.52
2001 2448 5.066893 GGATGCATCACATAGCTCAAAAGAA 59.933 40.000 27.25 0.00 39.84 2.52
2002 2449 5.963176 TGCATCACATAGCTCAAAAGAAA 57.037 34.783 0.00 0.00 0.00 2.52
2003 2450 6.519679 TGCATCACATAGCTCAAAAGAAAT 57.480 33.333 0.00 0.00 0.00 2.17
2004 2451 6.927416 TGCATCACATAGCTCAAAAGAAATT 58.073 32.000 0.00 0.00 0.00 1.82
2005 2452 8.054152 TGCATCACATAGCTCAAAAGAAATTA 57.946 30.769 0.00 0.00 0.00 1.40
2006 2453 8.522003 TGCATCACATAGCTCAAAAGAAATTAA 58.478 29.630 0.00 0.00 0.00 1.40
2007 2454 9.525409 GCATCACATAGCTCAAAAGAAATTAAT 57.475 29.630 0.00 0.00 0.00 1.40
2016 2463 8.752187 AGCTCAAAAGAAATTAATAAGGATGCA 58.248 29.630 0.00 0.00 0.00 3.96
2017 2464 9.538508 GCTCAAAAGAAATTAATAAGGATGCAT 57.461 29.630 0.00 0.00 0.00 3.96
2025 2472 9.565213 GAAATTAATAAGGATGCATCACATAGC 57.435 33.333 27.25 9.47 39.84 2.97
2026 2473 8.874744 AATTAATAAGGATGCATCACATAGCT 57.125 30.769 27.25 11.63 39.84 3.32
2027 2474 7.912056 TTAATAAGGATGCATCACATAGCTC 57.088 36.000 27.25 8.02 39.84 4.09
2028 2475 3.851458 AAGGATGCATCACATAGCTCA 57.149 42.857 27.25 0.00 39.84 4.26
2029 2476 3.851458 AGGATGCATCACATAGCTCAA 57.149 42.857 27.25 0.00 39.84 3.02
2030 2477 4.160642 AGGATGCATCACATAGCTCAAA 57.839 40.909 27.25 0.00 39.84 2.69
2031 2478 4.529897 AGGATGCATCACATAGCTCAAAA 58.470 39.130 27.25 0.00 39.84 2.44
2032 2479 4.579340 AGGATGCATCACATAGCTCAAAAG 59.421 41.667 27.25 0.00 39.84 2.27
2033 2480 4.577693 GGATGCATCACATAGCTCAAAAGA 59.422 41.667 27.25 0.00 39.84 2.52
2034 2481 5.066893 GGATGCATCACATAGCTCAAAAGAA 59.933 40.000 27.25 0.00 39.84 2.52
2035 2482 5.963176 TGCATCACATAGCTCAAAAGAAA 57.037 34.783 0.00 0.00 0.00 2.52
2036 2483 6.330004 TGCATCACATAGCTCAAAAGAAAA 57.670 33.333 0.00 0.00 0.00 2.29
2037 2484 6.384224 TGCATCACATAGCTCAAAAGAAAAG 58.616 36.000 0.00 0.00 0.00 2.27
2038 2485 6.207221 TGCATCACATAGCTCAAAAGAAAAGA 59.793 34.615 0.00 0.00 0.00 2.52
2039 2486 7.086376 GCATCACATAGCTCAAAAGAAAAGAA 58.914 34.615 0.00 0.00 0.00 2.52
2040 2487 7.596248 GCATCACATAGCTCAAAAGAAAAGAAA 59.404 33.333 0.00 0.00 0.00 2.52
2041 2488 9.125906 CATCACATAGCTCAAAAGAAAAGAAAG 57.874 33.333 0.00 0.00 0.00 2.62
2042 2489 7.651808 TCACATAGCTCAAAAGAAAAGAAAGG 58.348 34.615 0.00 0.00 0.00 3.11
2043 2490 6.865205 CACATAGCTCAAAAGAAAAGAAAGGG 59.135 38.462 0.00 0.00 0.00 3.95
2044 2491 6.777580 ACATAGCTCAAAAGAAAAGAAAGGGA 59.222 34.615 0.00 0.00 0.00 4.20
2045 2492 7.287696 ACATAGCTCAAAAGAAAAGAAAGGGAA 59.712 33.333 0.00 0.00 0.00 3.97
2046 2493 6.544928 AGCTCAAAAGAAAAGAAAGGGAAA 57.455 33.333 0.00 0.00 0.00 3.13
2047 2494 6.946340 AGCTCAAAAGAAAAGAAAGGGAAAA 58.054 32.000 0.00 0.00 0.00 2.29
2048 2495 7.394016 AGCTCAAAAGAAAAGAAAGGGAAAAA 58.606 30.769 0.00 0.00 0.00 1.94
2049 2496 8.049117 AGCTCAAAAGAAAAGAAAGGGAAAAAT 58.951 29.630 0.00 0.00 0.00 1.82
2050 2497 8.124823 GCTCAAAAGAAAAGAAAGGGAAAAATG 58.875 33.333 0.00 0.00 0.00 2.32
2051 2498 9.382275 CTCAAAAGAAAAGAAAGGGAAAAATGA 57.618 29.630 0.00 0.00 0.00 2.57
2052 2499 9.904198 TCAAAAGAAAAGAAAGGGAAAAATGAT 57.096 25.926 0.00 0.00 0.00 2.45
2053 2500 9.940166 CAAAAGAAAAGAAAGGGAAAAATGATG 57.060 29.630 0.00 0.00 0.00 3.07
2054 2501 7.734924 AAGAAAAGAAAGGGAAAAATGATGC 57.265 32.000 0.00 0.00 0.00 3.91
2055 2502 6.829849 AGAAAAGAAAGGGAAAAATGATGCA 58.170 32.000 0.00 0.00 0.00 3.96
2056 2503 7.455891 AGAAAAGAAAGGGAAAAATGATGCAT 58.544 30.769 0.00 0.00 0.00 3.96
2057 2504 7.605309 AGAAAAGAAAGGGAAAAATGATGCATC 59.395 33.333 20.14 20.14 0.00 3.91
2058 2505 6.363167 AAGAAAGGGAAAAATGATGCATCA 57.637 33.333 30.47 30.47 41.70 3.07
2059 2506 5.727434 AGAAAGGGAAAAATGATGCATCAC 58.273 37.500 30.92 17.49 40.03 3.06
2060 2507 5.246656 AGAAAGGGAAAAATGATGCATCACA 59.753 36.000 30.92 11.23 40.03 3.58
2061 2508 5.687166 AAGGGAAAAATGATGCATCACAT 57.313 34.783 30.92 19.83 43.54 3.21
2062 2509 6.795144 AAGGGAAAAATGATGCATCACATA 57.205 33.333 30.92 9.33 39.84 2.29
2063 2510 6.401047 AGGGAAAAATGATGCATCACATAG 57.599 37.500 30.92 0.00 39.84 2.23
2064 2511 4.986659 GGGAAAAATGATGCATCACATAGC 59.013 41.667 30.92 19.12 39.84 2.97
2065 2512 5.221382 GGGAAAAATGATGCATCACATAGCT 60.221 40.000 30.92 11.96 39.84 3.32
2066 2513 5.919141 GGAAAAATGATGCATCACATAGCTC 59.081 40.000 30.92 20.19 39.84 4.09
2067 2514 6.459670 AAAAATGATGCATCACATAGCTCA 57.540 33.333 30.92 7.47 39.84 4.26
2068 2515 6.459670 AAAATGATGCATCACATAGCTCAA 57.540 33.333 30.92 4.97 39.84 3.02
2069 2516 6.459670 AAATGATGCATCACATAGCTCAAA 57.540 33.333 30.92 4.42 39.84 2.69
2070 2517 6.459670 AATGATGCATCACATAGCTCAAAA 57.540 33.333 30.92 4.20 39.84 2.44
2071 2518 5.494632 TGATGCATCACATAGCTCAAAAG 57.505 39.130 25.42 0.00 39.84 2.27
2072 2519 5.187687 TGATGCATCACATAGCTCAAAAGA 58.812 37.500 25.42 0.00 39.84 2.52
2073 2520 5.648960 TGATGCATCACATAGCTCAAAAGAA 59.351 36.000 25.42 0.00 39.84 2.52
2074 2521 5.963176 TGCATCACATAGCTCAAAAGAAA 57.037 34.783 0.00 0.00 0.00 2.52
2075 2522 6.330004 TGCATCACATAGCTCAAAAGAAAA 57.670 33.333 0.00 0.00 0.00 2.29
2076 2523 6.384224 TGCATCACATAGCTCAAAAGAAAAG 58.616 36.000 0.00 0.00 0.00 2.27
2077 2524 6.207221 TGCATCACATAGCTCAAAAGAAAAGA 59.793 34.615 0.00 0.00 0.00 2.52
2078 2525 7.086376 GCATCACATAGCTCAAAAGAAAAGAA 58.914 34.615 0.00 0.00 0.00 2.52
2079 2526 7.596248 GCATCACATAGCTCAAAAGAAAAGAAA 59.404 33.333 0.00 0.00 0.00 2.52
2080 2527 9.467258 CATCACATAGCTCAAAAGAAAAGAAAA 57.533 29.630 0.00 0.00 0.00 2.29
2081 2528 9.688592 ATCACATAGCTCAAAAGAAAAGAAAAG 57.311 29.630 0.00 0.00 0.00 2.27
2082 2529 8.137437 TCACATAGCTCAAAAGAAAAGAAAAGG 58.863 33.333 0.00 0.00 0.00 3.11
2083 2530 8.137437 CACATAGCTCAAAAGAAAAGAAAAGGA 58.863 33.333 0.00 0.00 0.00 3.36
2084 2531 8.695456 ACATAGCTCAAAAGAAAAGAAAAGGAA 58.305 29.630 0.00 0.00 0.00 3.36
2085 2532 9.533253 CATAGCTCAAAAGAAAAGAAAAGGAAA 57.467 29.630 0.00 0.00 0.00 3.13
2087 2534 8.846943 AGCTCAAAAGAAAAGAAAAGGAAAAA 57.153 26.923 0.00 0.00 0.00 1.94
2088 2535 9.453572 AGCTCAAAAGAAAAGAAAAGGAAAAAT 57.546 25.926 0.00 0.00 0.00 1.82
2089 2536 9.494479 GCTCAAAAGAAAAGAAAAGGAAAAATG 57.506 29.630 0.00 0.00 0.00 2.32
2094 2541 8.735692 AAGAAAAGAAAAGGAAAAATGATGCA 57.264 26.923 0.00 0.00 0.00 3.96
2095 2542 8.913487 AGAAAAGAAAAGGAAAAATGATGCAT 57.087 26.923 0.00 0.00 0.00 3.96
2096 2543 8.996271 AGAAAAGAAAAGGAAAAATGATGCATC 58.004 29.630 20.14 20.14 0.00 3.91
2097 2544 8.680039 AAAAGAAAAGGAAAAATGATGCATCA 57.320 26.923 30.47 30.47 41.70 3.07
2098 2545 7.662604 AAGAAAAGGAAAAATGATGCATCAC 57.337 32.000 30.92 17.49 40.03 3.06
2099 2546 7.001099 AGAAAAGGAAAAATGATGCATCACT 57.999 32.000 30.92 19.04 40.03 3.41
2100 2547 7.447594 AGAAAAGGAAAAATGATGCATCACTT 58.552 30.769 30.92 24.07 40.03 3.16
2101 2548 8.587608 AGAAAAGGAAAAATGATGCATCACTTA 58.412 29.630 30.92 9.33 40.03 2.24
2102 2549 9.206870 GAAAAGGAAAAATGATGCATCACTTAA 57.793 29.630 30.92 8.92 40.03 1.85
2103 2550 8.538409 AAAGGAAAAATGATGCATCACTTAAC 57.462 30.769 30.92 21.09 40.03 2.01
2104 2551 7.472334 AGGAAAAATGATGCATCACTTAACT 57.528 32.000 30.92 20.30 40.03 2.24
2105 2552 7.318141 AGGAAAAATGATGCATCACTTAACTG 58.682 34.615 30.92 0.00 40.03 3.16
2106 2553 7.039504 AGGAAAAATGATGCATCACTTAACTGT 60.040 33.333 30.92 10.41 40.03 3.55
2107 2554 8.243426 GGAAAAATGATGCATCACTTAACTGTA 58.757 33.333 30.92 4.97 40.03 2.74
2108 2555 9.793252 GAAAAATGATGCATCACTTAACTGTAT 57.207 29.630 30.92 8.88 40.03 2.29
2109 2556 9.577110 AAAAATGATGCATCACTTAACTGTATG 57.423 29.630 30.92 0.00 40.03 2.39
2110 2557 8.510243 AAATGATGCATCACTTAACTGTATGA 57.490 30.769 30.92 3.73 40.03 2.15
2111 2558 8.687292 AATGATGCATCACTTAACTGTATGAT 57.313 30.769 30.92 7.67 40.03 2.45
2112 2559 9.783081 AATGATGCATCACTTAACTGTATGATA 57.217 29.630 30.92 2.64 40.03 2.15
2113 2560 9.955102 ATGATGCATCACTTAACTGTATGATAT 57.045 29.630 30.92 6.60 40.03 1.63
2117 2564 9.191995 TGCATCACTTAACTGTATGATATAACG 57.808 33.333 0.00 0.00 30.64 3.18
2118 2565 8.648097 GCATCACTTAACTGTATGATATAACGG 58.352 37.037 0.00 0.00 30.64 4.44
2119 2566 9.692749 CATCACTTAACTGTATGATATAACGGT 57.307 33.333 0.00 0.00 36.78 4.83
2120 2567 9.692749 ATCACTTAACTGTATGATATAACGGTG 57.307 33.333 0.00 0.00 35.42 4.94
2121 2568 8.689061 TCACTTAACTGTATGATATAACGGTGT 58.311 33.333 0.00 0.00 35.42 4.16
2122 2569 8.965172 CACTTAACTGTATGATATAACGGTGTC 58.035 37.037 0.00 0.00 35.42 3.67
2123 2570 7.859377 ACTTAACTGTATGATATAACGGTGTCG 59.141 37.037 0.00 0.00 43.02 4.35
2134 2581 2.517598 CGGTGTCGTTGAGAACAGG 58.482 57.895 0.00 0.00 0.00 4.00
2135 2582 0.944311 CGGTGTCGTTGAGAACAGGG 60.944 60.000 0.00 0.00 0.00 4.45
2136 2583 0.106149 GGTGTCGTTGAGAACAGGGT 59.894 55.000 0.00 0.00 0.00 4.34
2137 2584 1.217882 GTGTCGTTGAGAACAGGGTG 58.782 55.000 0.00 0.00 0.00 4.61
2138 2585 1.116308 TGTCGTTGAGAACAGGGTGA 58.884 50.000 0.00 0.00 0.00 4.02
2139 2586 1.202486 TGTCGTTGAGAACAGGGTGAC 60.202 52.381 0.00 0.00 0.00 3.67
2140 2587 1.116308 TCGTTGAGAACAGGGTGACA 58.884 50.000 0.00 0.00 0.00 3.58
2141 2588 1.691976 TCGTTGAGAACAGGGTGACAT 59.308 47.619 0.00 0.00 0.00 3.06
2142 2589 2.104111 TCGTTGAGAACAGGGTGACATT 59.896 45.455 0.00 0.00 0.00 2.71
2143 2590 2.224079 CGTTGAGAACAGGGTGACATTG 59.776 50.000 0.00 0.00 0.00 2.82
2144 2591 2.554032 GTTGAGAACAGGGTGACATTGG 59.446 50.000 0.00 0.00 0.00 3.16
2145 2592 1.168714 GAGAACAGGGTGACATTGGC 58.831 55.000 0.00 0.00 0.00 4.52
2146 2593 0.773644 AGAACAGGGTGACATTGGCT 59.226 50.000 0.00 0.00 0.00 4.75
2147 2594 1.985159 AGAACAGGGTGACATTGGCTA 59.015 47.619 0.00 0.00 0.00 3.93
2148 2595 2.026822 AGAACAGGGTGACATTGGCTAG 60.027 50.000 0.00 0.00 0.00 3.42
2149 2596 0.620556 ACAGGGTGACATTGGCTAGG 59.379 55.000 0.00 0.00 0.00 3.02
2150 2597 0.749454 CAGGGTGACATTGGCTAGGC 60.749 60.000 9.85 9.85 0.00 3.93
2151 2598 1.207488 AGGGTGACATTGGCTAGGCA 61.207 55.000 16.16 16.16 0.00 4.75
2152 2599 0.106519 GGGTGACATTGGCTAGGCAT 60.107 55.000 20.94 5.03 0.00 4.40
2153 2600 1.312815 GGTGACATTGGCTAGGCATC 58.687 55.000 20.94 15.07 0.00 3.91
2154 2601 1.408683 GGTGACATTGGCTAGGCATCA 60.409 52.381 20.94 17.56 0.00 3.07
2155 2602 2.579873 GTGACATTGGCTAGGCATCAT 58.420 47.619 20.94 8.81 0.00 2.45
2156 2603 2.292569 GTGACATTGGCTAGGCATCATG 59.707 50.000 20.94 22.02 0.00 3.07
2157 2604 1.268899 GACATTGGCTAGGCATCATGC 59.731 52.381 23.75 15.69 44.08 4.06
2173 2620 3.429925 GCAAGGAGCATGCTAGCC 58.570 61.111 22.74 18.83 44.79 3.93
2174 2621 2.192187 GCAAGGAGCATGCTAGCCC 61.192 63.158 22.74 18.04 44.79 5.19
2175 2622 1.225426 CAAGGAGCATGCTAGCCCA 59.775 57.895 22.74 0.00 33.13 5.36
2176 2623 0.178998 CAAGGAGCATGCTAGCCCAT 60.179 55.000 22.74 8.10 33.13 4.00
2177 2624 0.554792 AAGGAGCATGCTAGCCCATT 59.445 50.000 22.74 9.31 33.13 3.16
2178 2625 1.438469 AGGAGCATGCTAGCCCATTA 58.562 50.000 22.74 0.00 31.62 1.90
2179 2626 1.350351 AGGAGCATGCTAGCCCATTAG 59.650 52.381 22.74 0.00 31.62 1.73
2180 2627 1.163554 GAGCATGCTAGCCCATTAGC 58.836 55.000 22.74 7.12 44.97 3.09
2185 2632 3.379650 GCTAGCCCATTAGCGTTCA 57.620 52.632 2.29 0.00 36.97 3.18
2186 2633 1.663695 GCTAGCCCATTAGCGTTCAA 58.336 50.000 2.29 0.00 36.97 2.69
2187 2634 1.599542 GCTAGCCCATTAGCGTTCAAG 59.400 52.381 2.29 0.00 36.97 3.02
2188 2635 1.599542 CTAGCCCATTAGCGTTCAAGC 59.400 52.381 0.00 0.00 38.01 4.01
2190 2637 0.378610 GCCCATTAGCGTTCAAGCTC 59.621 55.000 0.00 0.00 45.67 4.09
2191 2638 2.014068 GCCCATTAGCGTTCAAGCTCT 61.014 52.381 0.00 0.00 45.67 4.09
2192 2639 2.359900 CCCATTAGCGTTCAAGCTCTT 58.640 47.619 0.00 0.00 45.67 2.85
2193 2640 3.531538 CCCATTAGCGTTCAAGCTCTTA 58.468 45.455 0.00 0.00 45.67 2.10
2194 2641 3.557595 CCCATTAGCGTTCAAGCTCTTAG 59.442 47.826 0.00 0.00 45.67 2.18
2195 2642 4.184629 CCATTAGCGTTCAAGCTCTTAGT 58.815 43.478 0.00 0.00 45.67 2.24
2196 2643 4.033358 CCATTAGCGTTCAAGCTCTTAGTG 59.967 45.833 0.00 0.00 45.67 2.74
2197 2644 2.086054 AGCGTTCAAGCTCTTAGTGG 57.914 50.000 0.00 0.00 45.67 4.00
2198 2645 1.344763 AGCGTTCAAGCTCTTAGTGGT 59.655 47.619 0.00 0.00 45.67 4.16
2199 2646 1.461127 GCGTTCAAGCTCTTAGTGGTG 59.539 52.381 0.00 0.00 0.00 4.17
2200 2647 1.461127 CGTTCAAGCTCTTAGTGGTGC 59.539 52.381 0.00 0.00 0.00 5.01
2201 2648 2.772287 GTTCAAGCTCTTAGTGGTGCT 58.228 47.619 0.00 0.00 37.37 4.40
2202 2649 2.462456 TCAAGCTCTTAGTGGTGCTG 57.538 50.000 0.00 0.00 35.79 4.41
2203 2650 1.002430 TCAAGCTCTTAGTGGTGCTGG 59.998 52.381 0.00 0.00 35.79 4.85
2204 2651 1.059913 AAGCTCTTAGTGGTGCTGGT 58.940 50.000 0.00 0.00 35.79 4.00
2205 2652 0.322975 AGCTCTTAGTGGTGCTGGTG 59.677 55.000 0.00 0.00 34.19 4.17
2206 2653 1.301677 GCTCTTAGTGGTGCTGGTGC 61.302 60.000 0.00 0.00 40.20 5.01
2207 2654 0.322975 CTCTTAGTGGTGCTGGTGCT 59.677 55.000 0.00 0.00 40.48 4.40
2208 2655 0.764890 TCTTAGTGGTGCTGGTGCTT 59.235 50.000 0.00 0.00 40.48 3.91
2209 2656 1.974957 TCTTAGTGGTGCTGGTGCTTA 59.025 47.619 0.00 0.00 40.48 3.09
2210 2657 2.028112 TCTTAGTGGTGCTGGTGCTTAG 60.028 50.000 0.00 0.00 40.48 2.18
2211 2658 1.639722 TAGTGGTGCTGGTGCTTAGA 58.360 50.000 0.00 0.00 40.48 2.10
2212 2659 0.322975 AGTGGTGCTGGTGCTTAGAG 59.677 55.000 0.00 0.00 40.48 2.43
2213 2660 0.321671 GTGGTGCTGGTGCTTAGAGA 59.678 55.000 0.00 0.00 40.48 3.10
2214 2661 1.065854 GTGGTGCTGGTGCTTAGAGAT 60.066 52.381 0.00 0.00 40.48 2.75
2215 2662 1.630369 TGGTGCTGGTGCTTAGAGATT 59.370 47.619 0.00 0.00 40.48 2.40
2216 2663 2.040278 TGGTGCTGGTGCTTAGAGATTT 59.960 45.455 0.00 0.00 40.48 2.17
2217 2664 3.084786 GGTGCTGGTGCTTAGAGATTTT 58.915 45.455 0.00 0.00 40.48 1.82
2218 2665 3.507622 GGTGCTGGTGCTTAGAGATTTTT 59.492 43.478 0.00 0.00 40.48 1.94
2258 2705 8.747538 TTTTTAAGGGCTAATCTTAGATGGTC 57.252 34.615 0.00 0.00 32.47 4.02
2259 2706 7.691993 TTTAAGGGCTAATCTTAGATGGTCT 57.308 36.000 0.00 0.00 32.47 3.85
2260 2707 5.816955 AAGGGCTAATCTTAGATGGTCTC 57.183 43.478 0.00 0.00 32.47 3.36
2261 2708 3.829601 AGGGCTAATCTTAGATGGTCTCG 59.170 47.826 0.00 0.00 32.47 4.04
2262 2709 3.574826 GGGCTAATCTTAGATGGTCTCGT 59.425 47.826 0.00 0.00 32.47 4.18
2263 2710 4.039366 GGGCTAATCTTAGATGGTCTCGTT 59.961 45.833 0.00 0.00 32.47 3.85
2264 2711 5.453480 GGGCTAATCTTAGATGGTCTCGTTT 60.453 44.000 0.00 0.00 32.47 3.60
2265 2712 6.049790 GGCTAATCTTAGATGGTCTCGTTTT 58.950 40.000 0.00 0.00 32.47 2.43
2266 2713 6.201234 GGCTAATCTTAGATGGTCTCGTTTTC 59.799 42.308 0.00 0.00 32.47 2.29
2267 2714 6.981559 GCTAATCTTAGATGGTCTCGTTTTCT 59.018 38.462 0.00 0.00 32.47 2.52
2268 2715 7.492994 GCTAATCTTAGATGGTCTCGTTTTCTT 59.507 37.037 0.00 0.00 32.47 2.52
2269 2716 9.372369 CTAATCTTAGATGGTCTCGTTTTCTTT 57.628 33.333 0.00 0.00 32.47 2.52
2270 2717 8.622948 AATCTTAGATGGTCTCGTTTTCTTTT 57.377 30.769 0.00 0.00 0.00 2.27
2271 2718 8.622948 ATCTTAGATGGTCTCGTTTTCTTTTT 57.377 30.769 0.00 0.00 0.00 1.94
2272 2719 8.084590 TCTTAGATGGTCTCGTTTTCTTTTTC 57.915 34.615 0.00 0.00 0.00 2.29
2273 2720 5.344207 AGATGGTCTCGTTTTCTTTTTCG 57.656 39.130 0.00 0.00 0.00 3.46
2274 2721 5.054477 AGATGGTCTCGTTTTCTTTTTCGA 58.946 37.500 0.00 0.00 0.00 3.71
2275 2722 5.701290 AGATGGTCTCGTTTTCTTTTTCGAT 59.299 36.000 0.00 0.00 0.00 3.59
2276 2723 6.872020 AGATGGTCTCGTTTTCTTTTTCGATA 59.128 34.615 0.00 0.00 0.00 2.92
2277 2724 7.549488 AGATGGTCTCGTTTTCTTTTTCGATAT 59.451 33.333 0.00 0.00 0.00 1.63
2278 2725 8.712285 ATGGTCTCGTTTTCTTTTTCGATATA 57.288 30.769 0.00 0.00 0.00 0.86
2279 2726 8.537049 TGGTCTCGTTTTCTTTTTCGATATAA 57.463 30.769 0.00 0.00 0.00 0.98
2280 2727 9.158233 TGGTCTCGTTTTCTTTTTCGATATAAT 57.842 29.630 0.00 0.00 0.00 1.28
2281 2728 9.983804 GGTCTCGTTTTCTTTTTCGATATAATT 57.016 29.630 0.00 0.00 0.00 1.40
2291 2738 9.362539 TCTTTTTCGATATAATTATACCGCTCC 57.637 33.333 13.52 0.00 0.00 4.70
2292 2739 9.146984 CTTTTTCGATATAATTATACCGCTCCA 57.853 33.333 13.52 0.00 0.00 3.86
2293 2740 9.491675 TTTTTCGATATAATTATACCGCTCCAA 57.508 29.630 13.52 1.46 0.00 3.53
2294 2741 9.661563 TTTTCGATATAATTATACCGCTCCAAT 57.338 29.630 13.52 0.00 0.00 3.16
2296 2743 9.961265 TTCGATATAATTATACCGCTCCAATAG 57.039 33.333 13.52 0.00 0.00 1.73
2297 2744 8.573885 TCGATATAATTATACCGCTCCAATAGG 58.426 37.037 13.52 0.00 0.00 2.57
2298 2745 7.328737 CGATATAATTATACCGCTCCAATAGGC 59.671 40.741 6.31 0.00 33.74 3.93
2299 2746 4.910458 AATTATACCGCTCCAATAGGCT 57.090 40.909 0.00 0.00 33.74 4.58
2300 2747 3.678056 TTATACCGCTCCAATAGGCTG 57.322 47.619 0.00 0.00 33.74 4.85
2301 2748 1.424638 ATACCGCTCCAATAGGCTGT 58.575 50.000 0.00 0.00 33.74 4.40
2302 2749 0.750850 TACCGCTCCAATAGGCTGTC 59.249 55.000 0.00 0.00 33.74 3.51
2303 2750 0.978146 ACCGCTCCAATAGGCTGTCT 60.978 55.000 0.00 0.00 33.74 3.41
2304 2751 0.531532 CCGCTCCAATAGGCTGTCTG 60.532 60.000 0.00 0.00 33.74 3.51
2305 2752 0.531532 CGCTCCAATAGGCTGTCTGG 60.532 60.000 0.00 0.69 33.74 3.86
2306 2753 0.543749 GCTCCAATAGGCTGTCTGGT 59.456 55.000 0.00 0.00 33.74 4.00
2307 2754 1.762957 GCTCCAATAGGCTGTCTGGTA 59.237 52.381 0.00 0.00 33.74 3.25
2308 2755 2.224161 GCTCCAATAGGCTGTCTGGTAG 60.224 54.545 0.00 2.58 33.74 3.18
2309 2756 3.300388 CTCCAATAGGCTGTCTGGTAGA 58.700 50.000 0.00 0.00 33.74 2.59
2310 2757 3.706594 CTCCAATAGGCTGTCTGGTAGAA 59.293 47.826 0.00 0.00 33.74 2.10
2311 2758 4.298626 TCCAATAGGCTGTCTGGTAGAAT 58.701 43.478 0.00 0.00 33.74 2.40
2312 2759 4.101585 TCCAATAGGCTGTCTGGTAGAATG 59.898 45.833 0.00 0.00 33.74 2.67
2313 2760 4.384056 CAATAGGCTGTCTGGTAGAATGG 58.616 47.826 0.00 0.00 0.00 3.16
2314 2761 0.543749 AGGCTGTCTGGTAGAATGGC 59.456 55.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.665972 TCGCCATTTTGGAAAAGCGC 60.666 50.000 0.00 0.00 40.96 5.92
1 2 1.777101 TTCGCCATTTTGGAAAAGCG 58.223 45.000 10.56 10.56 40.96 4.68
32 33 3.791353 GGCAAGCTAAAATGCGTTGATAC 59.209 43.478 2.18 0.00 43.47 2.24
39 40 1.987770 CAAGTGGCAAGCTAAAATGCG 59.012 47.619 2.18 0.00 43.47 4.73
116 117 1.873591 GCACCAAACAGAGTTCACGAT 59.126 47.619 0.00 0.00 0.00 3.73
129 130 1.004745 GAGATGAGGGAAGGCACCAAA 59.995 52.381 3.41 0.00 0.00 3.28
240 249 5.510671 AGAGCGTTTGTAGTGTCAAAAATG 58.489 37.500 0.00 0.00 38.71 2.32
241 250 5.751243 AGAGCGTTTGTAGTGTCAAAAAT 57.249 34.783 0.00 0.00 38.71 1.82
242 251 5.554822 AAGAGCGTTTGTAGTGTCAAAAA 57.445 34.783 0.00 0.00 38.71 1.94
277 297 6.726764 ACAACTCTTACTGAAATACTCCCTCT 59.273 38.462 0.00 0.00 0.00 3.69
513 533 6.934083 TGCAAGCACCGAGAATTTGATATATA 59.066 34.615 0.00 0.00 0.00 0.86
514 534 5.764686 TGCAAGCACCGAGAATTTGATATAT 59.235 36.000 0.00 0.00 0.00 0.86
515 535 5.122519 TGCAAGCACCGAGAATTTGATATA 58.877 37.500 0.00 0.00 0.00 0.86
516 536 3.947196 TGCAAGCACCGAGAATTTGATAT 59.053 39.130 0.00 0.00 0.00 1.63
517 537 3.342719 TGCAAGCACCGAGAATTTGATA 58.657 40.909 0.00 0.00 0.00 2.15
518 538 2.161855 TGCAAGCACCGAGAATTTGAT 58.838 42.857 0.00 0.00 0.00 2.57
519 539 1.536766 CTGCAAGCACCGAGAATTTGA 59.463 47.619 0.00 0.00 0.00 2.69
520 540 1.973138 CTGCAAGCACCGAGAATTTG 58.027 50.000 0.00 0.00 0.00 2.32
533 553 5.055144 ACAGTAGTATGATCATGCTGCAAG 58.945 41.667 32.08 26.75 38.26 4.01
534 554 5.027293 ACAGTAGTATGATCATGCTGCAA 57.973 39.130 32.08 15.26 38.26 4.08
535 555 4.677673 ACAGTAGTATGATCATGCTGCA 57.322 40.909 32.08 15.88 38.26 4.41
536 556 7.664082 AATAACAGTAGTATGATCATGCTGC 57.336 36.000 29.90 28.25 36.66 5.25
560 580 8.079203 TCAGAAAATTGAGCGCTTACATAAAAA 58.921 29.630 13.26 0.00 0.00 1.94
561 581 7.589395 TCAGAAAATTGAGCGCTTACATAAAA 58.411 30.769 13.26 0.00 0.00 1.52
562 582 7.139896 TCAGAAAATTGAGCGCTTACATAAA 57.860 32.000 13.26 0.00 0.00 1.40
563 583 6.735678 TCAGAAAATTGAGCGCTTACATAA 57.264 33.333 13.26 2.79 0.00 1.90
564 584 6.538381 TCATCAGAAAATTGAGCGCTTACATA 59.462 34.615 13.26 0.00 0.00 2.29
565 585 5.355071 TCATCAGAAAATTGAGCGCTTACAT 59.645 36.000 13.26 0.44 0.00 2.29
566 586 4.694982 TCATCAGAAAATTGAGCGCTTACA 59.305 37.500 13.26 2.07 0.00 2.41
567 587 5.221891 TCATCAGAAAATTGAGCGCTTAC 57.778 39.130 13.26 0.00 0.00 2.34
568 588 5.878332 TTCATCAGAAAATTGAGCGCTTA 57.122 34.783 13.26 3.74 0.00 3.09
569 589 4.771590 TTCATCAGAAAATTGAGCGCTT 57.228 36.364 13.26 0.00 0.00 4.68
570 590 4.639310 AGATTCATCAGAAAATTGAGCGCT 59.361 37.500 11.27 11.27 37.29 5.92
571 591 4.918037 AGATTCATCAGAAAATTGAGCGC 58.082 39.130 0.00 0.00 37.29 5.92
572 592 6.783162 AGAAGATTCATCAGAAAATTGAGCG 58.217 36.000 0.00 0.00 37.29 5.03
573 593 9.881529 GATAGAAGATTCATCAGAAAATTGAGC 57.118 33.333 0.00 0.00 37.29 4.26
577 597 9.571816 GGAGGATAGAAGATTCATCAGAAAATT 57.428 33.333 0.00 0.00 37.29 1.82
578 598 8.947305 AGGAGGATAGAAGATTCATCAGAAAAT 58.053 33.333 0.00 0.00 37.29 1.82
579 599 8.329346 AGGAGGATAGAAGATTCATCAGAAAA 57.671 34.615 0.00 0.00 37.29 2.29
580 600 7.927683 AGGAGGATAGAAGATTCATCAGAAA 57.072 36.000 0.00 0.00 37.29 2.52
581 601 7.927683 AAGGAGGATAGAAGATTCATCAGAA 57.072 36.000 0.00 0.00 38.31 3.02
582 602 7.346698 ACAAAGGAGGATAGAAGATTCATCAGA 59.653 37.037 0.00 0.00 0.00 3.27
583 603 7.507829 ACAAAGGAGGATAGAAGATTCATCAG 58.492 38.462 0.00 0.00 0.00 2.90
584 604 7.443302 ACAAAGGAGGATAGAAGATTCATCA 57.557 36.000 0.00 0.00 0.00 3.07
585 605 8.744568 AAACAAAGGAGGATAGAAGATTCATC 57.255 34.615 0.00 0.00 0.00 2.92
586 606 9.844257 CTAAACAAAGGAGGATAGAAGATTCAT 57.156 33.333 0.00 0.00 0.00 2.57
587 607 9.046846 TCTAAACAAAGGAGGATAGAAGATTCA 57.953 33.333 0.00 0.00 0.00 2.57
588 608 9.541143 CTCTAAACAAAGGAGGATAGAAGATTC 57.459 37.037 0.00 0.00 0.00 2.52
589 609 9.273137 TCTCTAAACAAAGGAGGATAGAAGATT 57.727 33.333 0.00 0.00 0.00 2.40
590 610 8.846423 TCTCTAAACAAAGGAGGATAGAAGAT 57.154 34.615 0.00 0.00 0.00 2.40
591 611 8.846423 ATCTCTAAACAAAGGAGGATAGAAGA 57.154 34.615 0.00 0.00 0.00 2.87
622 642 9.125026 CCAAATAGAGTTCATAACTGCCTAATT 57.875 33.333 0.00 0.00 43.03 1.40
623 643 8.275040 ACCAAATAGAGTTCATAACTGCCTAAT 58.725 33.333 0.00 0.00 43.03 1.73
624 644 7.552687 CACCAAATAGAGTTCATAACTGCCTAA 59.447 37.037 0.00 0.00 43.03 2.69
625 645 7.047891 CACCAAATAGAGTTCATAACTGCCTA 58.952 38.462 0.00 0.00 43.03 3.93
626 646 5.882557 CACCAAATAGAGTTCATAACTGCCT 59.117 40.000 0.00 0.00 43.03 4.75
627 647 5.066505 CCACCAAATAGAGTTCATAACTGCC 59.933 44.000 0.00 0.00 43.03 4.85
628 648 5.648092 ACCACCAAATAGAGTTCATAACTGC 59.352 40.000 0.00 0.00 43.03 4.40
629 649 7.530010 CAACCACCAAATAGAGTTCATAACTG 58.470 38.462 0.00 0.00 43.03 3.16
630 650 6.151144 GCAACCACCAAATAGAGTTCATAACT 59.849 38.462 0.00 0.00 46.38 2.24
631 651 6.151144 AGCAACCACCAAATAGAGTTCATAAC 59.849 38.462 0.00 0.00 0.00 1.89
632 652 6.245408 AGCAACCACCAAATAGAGTTCATAA 58.755 36.000 0.00 0.00 0.00 1.90
633 653 5.815581 AGCAACCACCAAATAGAGTTCATA 58.184 37.500 0.00 0.00 0.00 2.15
634 654 4.666512 AGCAACCACCAAATAGAGTTCAT 58.333 39.130 0.00 0.00 0.00 2.57
635 655 4.072131 GAGCAACCACCAAATAGAGTTCA 58.928 43.478 0.00 0.00 0.00 3.18
636 656 3.440522 GGAGCAACCACCAAATAGAGTTC 59.559 47.826 0.00 0.00 38.79 3.01
637 657 3.421844 GGAGCAACCACCAAATAGAGTT 58.578 45.455 0.00 0.00 38.79 3.01
638 658 2.290960 GGGAGCAACCACCAAATAGAGT 60.291 50.000 2.58 0.00 41.20 3.24
639 659 2.290896 TGGGAGCAACCACCAAATAGAG 60.291 50.000 0.00 0.00 41.20 2.43
640 660 1.707989 TGGGAGCAACCACCAAATAGA 59.292 47.619 0.00 0.00 41.20 1.98
641 661 2.214376 TGGGAGCAACCACCAAATAG 57.786 50.000 0.00 0.00 41.20 1.73
642 662 2.311542 AGATGGGAGCAACCACCAAATA 59.688 45.455 1.10 0.00 44.72 1.40
643 663 1.077663 AGATGGGAGCAACCACCAAAT 59.922 47.619 1.10 0.00 44.72 2.32
644 664 0.482446 AGATGGGAGCAACCACCAAA 59.518 50.000 1.10 0.00 44.72 3.28
645 665 0.482446 AAGATGGGAGCAACCACCAA 59.518 50.000 1.10 0.00 44.72 3.67
646 666 0.482446 AAAGATGGGAGCAACCACCA 59.518 50.000 1.10 0.00 44.72 4.17
647 667 0.890683 CAAAGATGGGAGCAACCACC 59.109 55.000 1.10 0.00 44.72 4.61
648 668 1.909700 TCAAAGATGGGAGCAACCAC 58.090 50.000 1.10 0.00 44.72 4.16
649 669 2.905415 ATCAAAGATGGGAGCAACCA 57.095 45.000 1.61 1.61 46.24 3.67
650 670 3.891049 ACTATCAAAGATGGGAGCAACC 58.109 45.455 0.00 0.00 38.08 3.77
651 671 4.943705 TCAACTATCAAAGATGGGAGCAAC 59.056 41.667 0.00 0.00 0.00 4.17
652 672 5.178096 TCAACTATCAAAGATGGGAGCAA 57.822 39.130 0.00 0.00 0.00 3.91
653 673 4.384537 CCTCAACTATCAAAGATGGGAGCA 60.385 45.833 0.00 0.00 29.99 4.26
654 674 4.133078 CCTCAACTATCAAAGATGGGAGC 58.867 47.826 0.00 0.00 29.99 4.70
655 675 5.620738 TCCTCAACTATCAAAGATGGGAG 57.379 43.478 0.00 0.00 29.99 4.30
656 676 5.488919 AGTTCCTCAACTATCAAAGATGGGA 59.511 40.000 0.00 0.00 41.39 4.37
665 685 4.142447 GCGTACTCAGTTCCTCAACTATCA 60.142 45.833 0.00 0.00 41.24 2.15
666 686 4.352887 GCGTACTCAGTTCCTCAACTATC 58.647 47.826 0.00 0.00 41.24 2.08
672 692 1.544691 GAAGGCGTACTCAGTTCCTCA 59.455 52.381 0.00 0.00 0.00 3.86
680 700 3.509967 TCTGAATTCTGAAGGCGTACTCA 59.490 43.478 12.17 0.00 0.00 3.41
686 706 2.159599 GCAACTCTGAATTCTGAAGGCG 60.160 50.000 14.97 7.03 0.00 5.52
688 708 4.070716 ACAGCAACTCTGAATTCTGAAGG 58.929 43.478 14.97 7.95 45.72 3.46
696 716 6.645790 AGAATGAAAACAGCAACTCTGAAT 57.354 33.333 0.00 0.00 45.72 2.57
721 741 9.210329 TGCGTCAAACTCTTACTGAAATAAATA 57.790 29.630 0.00 0.00 0.00 1.40
723 743 7.485418 TGCGTCAAACTCTTACTGAAATAAA 57.515 32.000 0.00 0.00 0.00 1.40
741 763 8.207521 TCACAAAGAATGAAATATATGCGTCA 57.792 30.769 0.00 0.00 0.00 4.35
742 764 8.551205 TCTCACAAAGAATGAAATATATGCGTC 58.449 33.333 0.00 0.00 0.00 5.19
743 765 8.437360 TCTCACAAAGAATGAAATATATGCGT 57.563 30.769 0.00 0.00 0.00 5.24
744 766 9.326339 CATCTCACAAAGAATGAAATATATGCG 57.674 33.333 0.00 0.00 37.61 4.73
752 774 9.611284 CGTAATTTCATCTCACAAAGAATGAAA 57.389 29.630 10.67 10.67 41.84 2.69
753 775 8.236586 CCGTAATTTCATCTCACAAAGAATGAA 58.763 33.333 0.00 0.00 37.61 2.57
754 776 7.148255 CCCGTAATTTCATCTCACAAAGAATGA 60.148 37.037 0.00 0.00 37.61 2.57
755 777 6.968904 CCCGTAATTTCATCTCACAAAGAATG 59.031 38.462 0.00 0.00 37.61 2.67
756 778 6.884295 TCCCGTAATTTCATCTCACAAAGAAT 59.116 34.615 0.00 0.00 37.61 2.40
860 1243 5.005740 TCATGCTGCAAGTACTGAGAATTT 58.994 37.500 6.36 0.00 35.30 1.82
869 1252 3.589988 AGTACACTCATGCTGCAAGTAC 58.410 45.455 6.36 13.90 35.30 2.73
884 1267 8.280497 CACTAATGTAAACAAACAGGAGTACAC 58.720 37.037 0.00 0.00 30.89 2.90
885 1268 7.988599 ACACTAATGTAAACAAACAGGAGTACA 59.011 33.333 0.00 0.00 37.26 2.90
911 1296 7.069826 AGGACAAAAGGTTCATCAGAAATTGAA 59.930 33.333 0.00 0.00 39.77 2.69
938 1324 3.556775 TCCGACTTTACCTTCACAAAACG 59.443 43.478 0.00 0.00 0.00 3.60
978 1365 2.639347 TGCAAGATGAGAAGTCCTTCCA 59.361 45.455 3.47 2.76 40.33 3.53
982 1369 3.265221 TCCATTGCAAGATGAGAAGTCCT 59.735 43.478 4.94 0.00 0.00 3.85
1023 1410 2.575532 CCAACTCCAACAAGCTTCAGA 58.424 47.619 0.00 0.00 0.00 3.27
1224 1611 4.275936 CCTTTGTACACTTCTGGAGGTTTG 59.724 45.833 0.00 0.00 0.00 2.93
1245 1632 2.263895 TGTACAGTATGCCCTTCCCT 57.736 50.000 0.00 0.00 42.53 4.20
1287 1674 3.249189 TGCTGCTTCTTCCCCGGT 61.249 61.111 0.00 0.00 0.00 5.28
1374 1771 2.723124 AAACCACATGAAATCGGCAC 57.277 45.000 0.00 0.00 0.00 5.01
1378 1775 4.151070 CACGAGAAAACCACATGAAATCG 58.849 43.478 0.00 0.32 0.00 3.34
1408 1806 4.803908 GGCACTGGGGCTAGCCAC 62.804 72.222 34.09 32.21 46.26 5.01
1501 1906 4.424711 GTGCTGATCCGCCCCCAA 62.425 66.667 6.66 0.00 0.00 4.12
1572 1977 3.222173 ACAAACACACTGGGCTATTGA 57.778 42.857 0.00 0.00 0.00 2.57
1583 1988 5.734855 AGTAGTGACATCAACAAACACAC 57.265 39.130 0.00 0.00 34.47 3.82
1772 2215 0.888285 AGCTGCTGTGTGCTCTTTCC 60.888 55.000 0.00 0.00 43.37 3.13
1781 2224 6.940298 TCCTATAAGTTAAAAAGCTGCTGTGT 59.060 34.615 1.35 0.00 0.00 3.72
1786 2229 7.220875 GCATTGTCCTATAAGTTAAAAAGCTGC 59.779 37.037 0.00 0.00 0.00 5.25
1790 2233 8.062065 TGGGCATTGTCCTATAAGTTAAAAAG 57.938 34.615 9.08 0.00 0.00 2.27
1815 2262 2.401583 TACCTCTCGTTGCAATGCAT 57.598 45.000 9.39 0.00 38.76 3.96
1853 2300 9.979578 GCATTAATATGAATGGGTAATCACAAA 57.020 29.630 13.72 0.00 37.31 2.83
1862 2309 6.716628 AGACAATCGCATTAATATGAATGGGT 59.283 34.615 22.80 12.00 45.31 4.51
1863 2310 7.149569 AGACAATCGCATTAATATGAATGGG 57.850 36.000 19.44 19.44 46.03 4.00
1888 2335 9.801873 CTGACGGGATTTGATAAACATTTATTT 57.198 29.630 0.00 0.00 33.72 1.40
1889 2336 8.966868 ACTGACGGGATTTGATAAACATTTATT 58.033 29.630 0.00 0.00 33.72 1.40
1890 2337 8.405531 CACTGACGGGATTTGATAAACATTTAT 58.594 33.333 0.00 0.00 36.14 1.40
1891 2338 7.608376 TCACTGACGGGATTTGATAAACATTTA 59.392 33.333 0.00 0.00 0.00 1.40
1892 2339 6.432783 TCACTGACGGGATTTGATAAACATTT 59.567 34.615 0.00 0.00 0.00 2.32
1893 2340 5.943416 TCACTGACGGGATTTGATAAACATT 59.057 36.000 0.00 0.00 0.00 2.71
1894 2341 5.496556 TCACTGACGGGATTTGATAAACAT 58.503 37.500 0.00 0.00 0.00 2.71
1895 2342 4.900684 TCACTGACGGGATTTGATAAACA 58.099 39.130 0.00 0.00 0.00 2.83
1896 2343 6.436843 AATCACTGACGGGATTTGATAAAC 57.563 37.500 0.00 0.00 29.77 2.01
1897 2344 7.066525 GGTAAATCACTGACGGGATTTGATAAA 59.933 37.037 11.63 0.00 42.13 1.40
1898 2345 6.540914 GGTAAATCACTGACGGGATTTGATAA 59.459 38.462 11.63 0.00 42.13 1.75
1899 2346 6.053005 GGTAAATCACTGACGGGATTTGATA 58.947 40.000 11.63 0.00 42.13 2.15
1900 2347 4.881850 GGTAAATCACTGACGGGATTTGAT 59.118 41.667 11.63 0.12 42.13 2.57
1901 2348 4.019681 AGGTAAATCACTGACGGGATTTGA 60.020 41.667 11.63 0.00 42.13 2.69
1902 2349 4.261801 AGGTAAATCACTGACGGGATTTG 58.738 43.478 11.63 0.00 42.13 2.32
1903 2350 4.569719 AGGTAAATCACTGACGGGATTT 57.430 40.909 7.58 7.58 43.84 2.17
1904 2351 4.569719 AAGGTAAATCACTGACGGGATT 57.430 40.909 0.00 0.00 35.34 3.01
1905 2352 4.468510 TGTAAGGTAAATCACTGACGGGAT 59.531 41.667 0.00 0.00 0.00 3.85
1906 2353 3.833650 TGTAAGGTAAATCACTGACGGGA 59.166 43.478 0.00 0.00 0.00 5.14
1907 2354 4.181578 CTGTAAGGTAAATCACTGACGGG 58.818 47.826 0.00 0.00 0.00 5.28
1908 2355 4.817517 ACTGTAAGGTAAATCACTGACGG 58.182 43.478 0.00 0.00 39.30 4.79
1909 2356 6.422701 TCAAACTGTAAGGTAAATCACTGACG 59.577 38.462 0.00 0.00 39.30 4.35
1910 2357 7.724305 TCAAACTGTAAGGTAAATCACTGAC 57.276 36.000 0.00 0.00 39.30 3.51
1911 2358 7.390440 CCATCAAACTGTAAGGTAAATCACTGA 59.610 37.037 0.00 0.00 39.30 3.41
1912 2359 7.362056 CCCATCAAACTGTAAGGTAAATCACTG 60.362 40.741 0.00 0.00 39.30 3.66
1913 2360 6.659242 CCCATCAAACTGTAAGGTAAATCACT 59.341 38.462 0.00 0.00 39.30 3.41
1914 2361 6.657541 TCCCATCAAACTGTAAGGTAAATCAC 59.342 38.462 0.00 0.00 39.30 3.06
1915 2362 6.785076 TCCCATCAAACTGTAAGGTAAATCA 58.215 36.000 0.00 0.00 39.30 2.57
1916 2363 7.393515 ACTTCCCATCAAACTGTAAGGTAAATC 59.606 37.037 0.00 0.00 39.30 2.17
1917 2364 7.238710 ACTTCCCATCAAACTGTAAGGTAAAT 58.761 34.615 0.00 0.00 39.30 1.40
1918 2365 6.607019 ACTTCCCATCAAACTGTAAGGTAAA 58.393 36.000 0.00 0.00 39.30 2.01
1919 2366 6.195600 ACTTCCCATCAAACTGTAAGGTAA 57.804 37.500 0.00 0.00 39.30 2.85
1920 2367 5.836024 ACTTCCCATCAAACTGTAAGGTA 57.164 39.130 0.00 0.00 39.30 3.08
1921 2368 4.724279 ACTTCCCATCAAACTGTAAGGT 57.276 40.909 0.00 0.00 39.30 3.50
1922 2369 5.278957 CCAAACTTCCCATCAAACTGTAAGG 60.279 44.000 0.00 0.00 39.30 2.69
1923 2370 5.301805 ACCAAACTTCCCATCAAACTGTAAG 59.698 40.000 0.00 0.00 42.29 2.34
1924 2371 5.205056 ACCAAACTTCCCATCAAACTGTAA 58.795 37.500 0.00 0.00 0.00 2.41
1925 2372 4.798882 ACCAAACTTCCCATCAAACTGTA 58.201 39.130 0.00 0.00 0.00 2.74
1926 2373 3.642141 ACCAAACTTCCCATCAAACTGT 58.358 40.909 0.00 0.00 0.00 3.55
1927 2374 5.301805 ACTTACCAAACTTCCCATCAAACTG 59.698 40.000 0.00 0.00 0.00 3.16
1928 2375 5.454966 ACTTACCAAACTTCCCATCAAACT 58.545 37.500 0.00 0.00 0.00 2.66
1929 2376 5.784578 ACTTACCAAACTTCCCATCAAAC 57.215 39.130 0.00 0.00 0.00 2.93
1930 2377 7.899648 TTTACTTACCAAACTTCCCATCAAA 57.100 32.000 0.00 0.00 0.00 2.69
1931 2378 8.485578 AATTTACTTACCAAACTTCCCATCAA 57.514 30.769 0.00 0.00 0.00 2.57
1932 2379 9.589461 TTAATTTACTTACCAAACTTCCCATCA 57.411 29.630 0.00 0.00 0.00 3.07
1934 2381 9.816787 TCTTAATTTACTTACCAAACTTCCCAT 57.183 29.630 0.00 0.00 0.00 4.00
1935 2382 9.816787 ATCTTAATTTACTTACCAAACTTCCCA 57.183 29.630 0.00 0.00 0.00 4.37
1948 2395 9.995003 TTGCACCAATTTCATCTTAATTTACTT 57.005 25.926 0.00 0.00 0.00 2.24
1949 2396 9.995003 TTTGCACCAATTTCATCTTAATTTACT 57.005 25.926 0.00 0.00 0.00 2.24
1952 2399 8.785946 CCTTTTGCACCAATTTCATCTTAATTT 58.214 29.630 0.00 0.00 0.00 1.82
1953 2400 8.156165 TCCTTTTGCACCAATTTCATCTTAATT 58.844 29.630 0.00 0.00 0.00 1.40
1954 2401 7.678837 TCCTTTTGCACCAATTTCATCTTAAT 58.321 30.769 0.00 0.00 0.00 1.40
1955 2402 7.060383 TCCTTTTGCACCAATTTCATCTTAA 57.940 32.000 0.00 0.00 0.00 1.85
1956 2403 6.662865 TCCTTTTGCACCAATTTCATCTTA 57.337 33.333 0.00 0.00 0.00 2.10
1957 2404 5.549742 TCCTTTTGCACCAATTTCATCTT 57.450 34.783 0.00 0.00 0.00 2.40
1958 2405 5.484715 CATCCTTTTGCACCAATTTCATCT 58.515 37.500 0.00 0.00 0.00 2.90
1959 2406 4.093850 GCATCCTTTTGCACCAATTTCATC 59.906 41.667 0.00 0.00 42.31 2.92
1960 2407 4.004982 GCATCCTTTTGCACCAATTTCAT 58.995 39.130 0.00 0.00 42.31 2.57
1961 2408 3.401182 GCATCCTTTTGCACCAATTTCA 58.599 40.909 0.00 0.00 42.31 2.69
1971 2418 3.067742 AGCTATGTGATGCATCCTTTTGC 59.932 43.478 23.67 20.02 43.07 3.68
1972 2419 4.337274 TGAGCTATGTGATGCATCCTTTTG 59.663 41.667 23.67 12.02 38.94 2.44
1973 2420 4.529897 TGAGCTATGTGATGCATCCTTTT 58.470 39.130 23.67 8.73 38.94 2.27
1974 2421 4.160642 TGAGCTATGTGATGCATCCTTT 57.839 40.909 23.67 10.44 38.94 3.11
1975 2422 3.851458 TGAGCTATGTGATGCATCCTT 57.149 42.857 23.67 14.50 38.94 3.36
1976 2423 3.851458 TTGAGCTATGTGATGCATCCT 57.149 42.857 23.67 12.07 38.94 3.24
1977 2424 4.577693 TCTTTTGAGCTATGTGATGCATCC 59.422 41.667 23.67 15.02 38.94 3.51
1978 2425 5.746307 TCTTTTGAGCTATGTGATGCATC 57.254 39.130 20.14 20.14 38.94 3.91
1979 2426 6.519679 TTTCTTTTGAGCTATGTGATGCAT 57.480 33.333 0.00 0.00 41.42 3.96
1980 2427 5.963176 TTTCTTTTGAGCTATGTGATGCA 57.037 34.783 0.00 0.00 0.00 3.96
1981 2428 8.915871 TTAATTTCTTTTGAGCTATGTGATGC 57.084 30.769 0.00 0.00 0.00 3.91
1990 2437 8.752187 TGCATCCTTATTAATTTCTTTTGAGCT 58.248 29.630 0.00 0.00 0.00 4.09
1991 2438 8.931385 TGCATCCTTATTAATTTCTTTTGAGC 57.069 30.769 0.00 0.00 0.00 4.26
1999 2446 9.565213 GCTATGTGATGCATCCTTATTAATTTC 57.435 33.333 23.67 0.00 38.94 2.17
2000 2447 9.305555 AGCTATGTGATGCATCCTTATTAATTT 57.694 29.630 23.67 0.00 38.94 1.82
2001 2448 8.874744 AGCTATGTGATGCATCCTTATTAATT 57.125 30.769 23.67 0.00 38.94 1.40
2002 2449 8.105197 TGAGCTATGTGATGCATCCTTATTAAT 58.895 33.333 23.67 9.06 38.94 1.40
2003 2450 7.452562 TGAGCTATGTGATGCATCCTTATTAA 58.547 34.615 23.67 0.00 38.94 1.40
2004 2451 7.008021 TGAGCTATGTGATGCATCCTTATTA 57.992 36.000 23.67 0.77 38.94 0.98
2005 2452 5.872963 TGAGCTATGTGATGCATCCTTATT 58.127 37.500 23.67 7.04 38.94 1.40
2006 2453 5.494390 TGAGCTATGTGATGCATCCTTAT 57.506 39.130 23.67 16.25 38.94 1.73
2007 2454 4.961438 TGAGCTATGTGATGCATCCTTA 57.039 40.909 23.67 14.80 38.94 2.69
2008 2455 3.851458 TGAGCTATGTGATGCATCCTT 57.149 42.857 23.67 14.50 38.94 3.36
2009 2456 3.851458 TTGAGCTATGTGATGCATCCT 57.149 42.857 23.67 12.07 38.94 3.24
2010 2457 4.577693 TCTTTTGAGCTATGTGATGCATCC 59.422 41.667 23.67 15.02 38.94 3.51
2011 2458 5.746307 TCTTTTGAGCTATGTGATGCATC 57.254 39.130 20.14 20.14 38.94 3.91
2012 2459 6.519679 TTTCTTTTGAGCTATGTGATGCAT 57.480 33.333 0.00 0.00 41.42 3.96
2013 2460 5.963176 TTTCTTTTGAGCTATGTGATGCA 57.037 34.783 0.00 0.00 0.00 3.96
2014 2461 6.615088 TCTTTTCTTTTGAGCTATGTGATGC 58.385 36.000 0.00 0.00 0.00 3.91
2015 2462 9.125906 CTTTCTTTTCTTTTGAGCTATGTGATG 57.874 33.333 0.00 0.00 0.00 3.07
2016 2463 8.302438 CCTTTCTTTTCTTTTGAGCTATGTGAT 58.698 33.333 0.00 0.00 0.00 3.06
2017 2464 7.255590 CCCTTTCTTTTCTTTTGAGCTATGTGA 60.256 37.037 0.00 0.00 0.00 3.58
2018 2465 6.865205 CCCTTTCTTTTCTTTTGAGCTATGTG 59.135 38.462 0.00 0.00 0.00 3.21
2019 2466 6.777580 TCCCTTTCTTTTCTTTTGAGCTATGT 59.222 34.615 0.00 0.00 0.00 2.29
2020 2467 7.219484 TCCCTTTCTTTTCTTTTGAGCTATG 57.781 36.000 0.00 0.00 0.00 2.23
2021 2468 7.839680 TTCCCTTTCTTTTCTTTTGAGCTAT 57.160 32.000 0.00 0.00 0.00 2.97
2022 2469 7.654022 TTTCCCTTTCTTTTCTTTTGAGCTA 57.346 32.000 0.00 0.00 0.00 3.32
2023 2470 6.544928 TTTCCCTTTCTTTTCTTTTGAGCT 57.455 33.333 0.00 0.00 0.00 4.09
2024 2471 7.609760 TTTTTCCCTTTCTTTTCTTTTGAGC 57.390 32.000 0.00 0.00 0.00 4.26
2025 2472 9.382275 TCATTTTTCCCTTTCTTTTCTTTTGAG 57.618 29.630 0.00 0.00 0.00 3.02
2026 2473 9.904198 ATCATTTTTCCCTTTCTTTTCTTTTGA 57.096 25.926 0.00 0.00 0.00 2.69
2027 2474 9.940166 CATCATTTTTCCCTTTCTTTTCTTTTG 57.060 29.630 0.00 0.00 0.00 2.44
2028 2475 8.623903 GCATCATTTTTCCCTTTCTTTTCTTTT 58.376 29.630 0.00 0.00 0.00 2.27
2029 2476 7.774625 TGCATCATTTTTCCCTTTCTTTTCTTT 59.225 29.630 0.00 0.00 0.00 2.52
2030 2477 7.281841 TGCATCATTTTTCCCTTTCTTTTCTT 58.718 30.769 0.00 0.00 0.00 2.52
2031 2478 6.829849 TGCATCATTTTTCCCTTTCTTTTCT 58.170 32.000 0.00 0.00 0.00 2.52
2032 2479 7.388500 TGATGCATCATTTTTCCCTTTCTTTTC 59.612 33.333 25.42 0.00 0.00 2.29
2033 2480 7.173735 GTGATGCATCATTTTTCCCTTTCTTTT 59.826 33.333 30.89 0.00 39.30 2.27
2034 2481 6.652062 GTGATGCATCATTTTTCCCTTTCTTT 59.348 34.615 30.89 0.00 39.30 2.52
2035 2482 6.168389 GTGATGCATCATTTTTCCCTTTCTT 58.832 36.000 30.89 0.00 39.30 2.52
2036 2483 5.246656 TGTGATGCATCATTTTTCCCTTTCT 59.753 36.000 30.89 0.00 39.30 2.52
2037 2484 5.481105 TGTGATGCATCATTTTTCCCTTTC 58.519 37.500 30.89 14.41 39.30 2.62
2038 2485 5.486735 TGTGATGCATCATTTTTCCCTTT 57.513 34.783 30.89 0.00 39.30 3.11
2039 2486 5.687166 ATGTGATGCATCATTTTTCCCTT 57.313 34.783 30.89 12.25 39.30 3.95
2040 2487 5.221382 GCTATGTGATGCATCATTTTTCCCT 60.221 40.000 30.89 13.01 39.30 4.20
2041 2488 4.986659 GCTATGTGATGCATCATTTTTCCC 59.013 41.667 30.89 16.96 39.30 3.97
2042 2489 5.839621 AGCTATGTGATGCATCATTTTTCC 58.160 37.500 30.89 17.65 39.30 3.13
2043 2490 6.500910 TGAGCTATGTGATGCATCATTTTTC 58.499 36.000 30.89 21.69 39.30 2.29
2044 2491 6.459670 TGAGCTATGTGATGCATCATTTTT 57.540 33.333 30.89 17.88 39.30 1.94
2045 2492 6.459670 TTGAGCTATGTGATGCATCATTTT 57.540 33.333 30.89 20.11 39.30 1.82
2046 2493 6.459670 TTTGAGCTATGTGATGCATCATTT 57.540 33.333 30.89 22.38 39.30 2.32
2047 2494 6.320418 TCTTTTGAGCTATGTGATGCATCATT 59.680 34.615 30.89 22.71 39.30 2.57
2048 2495 5.826208 TCTTTTGAGCTATGTGATGCATCAT 59.174 36.000 30.89 19.08 39.30 2.45
2049 2496 5.187687 TCTTTTGAGCTATGTGATGCATCA 58.812 37.500 25.42 25.42 38.94 3.07
2050 2497 5.746307 TCTTTTGAGCTATGTGATGCATC 57.254 39.130 20.14 20.14 38.94 3.91
2051 2498 6.519679 TTTCTTTTGAGCTATGTGATGCAT 57.480 33.333 0.00 0.00 41.42 3.96
2052 2499 5.963176 TTTCTTTTGAGCTATGTGATGCA 57.037 34.783 0.00 0.00 0.00 3.96
2053 2500 6.615088 TCTTTTCTTTTGAGCTATGTGATGC 58.385 36.000 0.00 0.00 0.00 3.91
2054 2501 9.467258 TTTTCTTTTCTTTTGAGCTATGTGATG 57.533 29.630 0.00 0.00 0.00 3.07
2055 2502 9.688592 CTTTTCTTTTCTTTTGAGCTATGTGAT 57.311 29.630 0.00 0.00 0.00 3.06
2056 2503 8.137437 CCTTTTCTTTTCTTTTGAGCTATGTGA 58.863 33.333 0.00 0.00 0.00 3.58
2057 2504 8.137437 TCCTTTTCTTTTCTTTTGAGCTATGTG 58.863 33.333 0.00 0.00 0.00 3.21
2058 2505 8.237811 TCCTTTTCTTTTCTTTTGAGCTATGT 57.762 30.769 0.00 0.00 0.00 2.29
2059 2506 9.533253 TTTCCTTTTCTTTTCTTTTGAGCTATG 57.467 29.630 0.00 0.00 0.00 2.23
2061 2508 9.936759 TTTTTCCTTTTCTTTTCTTTTGAGCTA 57.063 25.926 0.00 0.00 0.00 3.32
2062 2509 8.846943 TTTTTCCTTTTCTTTTCTTTTGAGCT 57.153 26.923 0.00 0.00 0.00 4.09
2063 2510 9.494479 CATTTTTCCTTTTCTTTTCTTTTGAGC 57.506 29.630 0.00 0.00 0.00 4.26
2068 2515 9.176460 TGCATCATTTTTCCTTTTCTTTTCTTT 57.824 25.926 0.00 0.00 0.00 2.52
2069 2516 8.735692 TGCATCATTTTTCCTTTTCTTTTCTT 57.264 26.923 0.00 0.00 0.00 2.52
2070 2517 8.913487 ATGCATCATTTTTCCTTTTCTTTTCT 57.087 26.923 0.00 0.00 0.00 2.52
2071 2518 8.776470 TGATGCATCATTTTTCCTTTTCTTTTC 58.224 29.630 25.42 0.00 0.00 2.29
2072 2519 8.562052 GTGATGCATCATTTTTCCTTTTCTTTT 58.438 29.630 30.89 0.00 39.30 2.27
2073 2520 7.935210 AGTGATGCATCATTTTTCCTTTTCTTT 59.065 29.630 30.89 0.00 39.30 2.52
2074 2521 7.447594 AGTGATGCATCATTTTTCCTTTTCTT 58.552 30.769 30.89 0.00 39.30 2.52
2075 2522 7.001099 AGTGATGCATCATTTTTCCTTTTCT 57.999 32.000 30.89 15.95 39.30 2.52
2076 2523 7.662604 AAGTGATGCATCATTTTTCCTTTTC 57.337 32.000 30.89 14.01 39.30 2.29
2077 2524 8.992073 GTTAAGTGATGCATCATTTTTCCTTTT 58.008 29.630 33.65 15.79 37.77 2.27
2078 2525 8.370182 AGTTAAGTGATGCATCATTTTTCCTTT 58.630 29.630 33.65 16.41 37.77 3.11
2079 2526 7.816031 CAGTTAAGTGATGCATCATTTTTCCTT 59.184 33.333 33.65 28.10 37.77 3.36
2080 2527 7.039504 ACAGTTAAGTGATGCATCATTTTTCCT 60.040 33.333 33.65 24.51 37.77 3.36
2081 2528 7.092716 ACAGTTAAGTGATGCATCATTTTTCC 58.907 34.615 33.65 23.15 37.77 3.13
2082 2529 9.793252 ATACAGTTAAGTGATGCATCATTTTTC 57.207 29.630 33.65 26.15 37.77 2.29
2083 2530 9.577110 CATACAGTTAAGTGATGCATCATTTTT 57.423 29.630 33.65 26.44 37.77 1.94
2084 2531 8.959548 TCATACAGTTAAGTGATGCATCATTTT 58.040 29.630 33.65 28.38 37.77 1.82
2085 2532 8.510243 TCATACAGTTAAGTGATGCATCATTT 57.490 30.769 31.92 31.92 39.58 2.32
2086 2533 8.687292 ATCATACAGTTAAGTGATGCATCATT 57.313 30.769 30.89 24.57 39.30 2.57
2087 2534 9.955102 ATATCATACAGTTAAGTGATGCATCAT 57.045 29.630 30.89 19.08 39.30 2.45
2091 2538 9.191995 CGTTATATCATACAGTTAAGTGATGCA 57.808 33.333 17.23 0.00 33.65 3.96
2092 2539 8.648097 CCGTTATATCATACAGTTAAGTGATGC 58.352 37.037 17.23 2.85 33.65 3.91
2093 2540 9.692749 ACCGTTATATCATACAGTTAAGTGATG 57.307 33.333 17.23 14.46 33.65 3.07
2094 2541 9.692749 CACCGTTATATCATACAGTTAAGTGAT 57.307 33.333 17.23 2.68 35.62 3.06
2095 2542 8.689061 ACACCGTTATATCATACAGTTAAGTGA 58.311 33.333 17.23 1.47 0.00 3.41
2096 2543 8.867112 ACACCGTTATATCATACAGTTAAGTG 57.133 34.615 8.81 8.81 0.00 3.16
2097 2544 7.859377 CGACACCGTTATATCATACAGTTAAGT 59.141 37.037 0.00 0.00 0.00 2.24
2098 2545 8.212372 CGACACCGTTATATCATACAGTTAAG 57.788 38.462 0.00 0.00 0.00 1.85
2116 2563 0.944311 CCCTGTTCTCAACGACACCG 60.944 60.000 0.00 0.00 42.50 4.94
2117 2564 0.106149 ACCCTGTTCTCAACGACACC 59.894 55.000 0.00 0.00 0.00 4.16
2118 2565 1.202486 TCACCCTGTTCTCAACGACAC 60.202 52.381 0.00 0.00 0.00 3.67
2119 2566 1.116308 TCACCCTGTTCTCAACGACA 58.884 50.000 0.00 0.00 0.00 4.35
2120 2567 1.202486 TGTCACCCTGTTCTCAACGAC 60.202 52.381 0.00 0.00 0.00 4.34
2121 2568 1.116308 TGTCACCCTGTTCTCAACGA 58.884 50.000 0.00 0.00 0.00 3.85
2122 2569 2.169832 ATGTCACCCTGTTCTCAACG 57.830 50.000 0.00 0.00 0.00 4.10
2123 2570 2.554032 CCAATGTCACCCTGTTCTCAAC 59.446 50.000 0.00 0.00 0.00 3.18
2124 2571 2.862541 CCAATGTCACCCTGTTCTCAA 58.137 47.619 0.00 0.00 0.00 3.02
2125 2572 1.545428 GCCAATGTCACCCTGTTCTCA 60.545 52.381 0.00 0.00 0.00 3.27
2126 2573 1.168714 GCCAATGTCACCCTGTTCTC 58.831 55.000 0.00 0.00 0.00 2.87
2127 2574 0.773644 AGCCAATGTCACCCTGTTCT 59.226 50.000 0.00 0.00 0.00 3.01
2128 2575 2.359900 CTAGCCAATGTCACCCTGTTC 58.640 52.381 0.00 0.00 0.00 3.18
2129 2576 1.004745 CCTAGCCAATGTCACCCTGTT 59.995 52.381 0.00 0.00 0.00 3.16
2130 2577 0.620556 CCTAGCCAATGTCACCCTGT 59.379 55.000 0.00 0.00 0.00 4.00
2131 2578 0.749454 GCCTAGCCAATGTCACCCTG 60.749 60.000 0.00 0.00 0.00 4.45
2132 2579 1.207488 TGCCTAGCCAATGTCACCCT 61.207 55.000 0.00 0.00 0.00 4.34
2133 2580 0.106519 ATGCCTAGCCAATGTCACCC 60.107 55.000 0.00 0.00 0.00 4.61
2134 2581 1.312815 GATGCCTAGCCAATGTCACC 58.687 55.000 0.00 0.00 0.00 4.02
2135 2582 2.042686 TGATGCCTAGCCAATGTCAC 57.957 50.000 0.00 0.00 0.00 3.67
2136 2583 2.578786 CATGATGCCTAGCCAATGTCA 58.421 47.619 0.00 0.00 0.00 3.58
2137 2584 1.268899 GCATGATGCCTAGCCAATGTC 59.731 52.381 6.04 0.00 37.42 3.06
2138 2585 1.325355 GCATGATGCCTAGCCAATGT 58.675 50.000 6.04 0.00 37.42 2.71
2139 2586 1.324383 TGCATGATGCCTAGCCAATG 58.676 50.000 15.70 0.00 44.23 2.82
2140 2587 1.961394 CTTGCATGATGCCTAGCCAAT 59.039 47.619 15.70 0.00 44.23 3.16
2141 2588 1.395635 CTTGCATGATGCCTAGCCAA 58.604 50.000 15.70 0.01 44.23 4.52
2142 2589 0.466739 CCTTGCATGATGCCTAGCCA 60.467 55.000 15.70 0.00 44.23 4.75
2143 2590 0.179009 TCCTTGCATGATGCCTAGCC 60.179 55.000 15.70 0.00 44.23 3.93
2144 2591 1.236628 CTCCTTGCATGATGCCTAGC 58.763 55.000 15.70 0.00 44.23 3.42
2145 2592 1.236628 GCTCCTTGCATGATGCCTAG 58.763 55.000 15.70 11.81 44.23 3.02
2146 2593 3.409201 GCTCCTTGCATGATGCCTA 57.591 52.632 15.70 1.95 44.23 3.93
2147 2594 4.254721 GCTCCTTGCATGATGCCT 57.745 55.556 15.70 0.00 44.23 4.75
2156 2603 2.192187 GGGCTAGCATGCTCCTTGC 61.192 63.158 26.57 22.22 43.25 4.01
2157 2604 0.178998 ATGGGCTAGCATGCTCCTTG 60.179 55.000 26.57 13.93 31.16 3.61
2158 2605 0.554792 AATGGGCTAGCATGCTCCTT 59.445 50.000 26.57 14.64 31.16 3.36
2159 2606 1.350351 CTAATGGGCTAGCATGCTCCT 59.650 52.381 26.57 7.18 31.16 3.69
2160 2607 1.818642 CTAATGGGCTAGCATGCTCC 58.181 55.000 26.57 20.19 31.16 4.70
2161 2608 1.163554 GCTAATGGGCTAGCATGCTC 58.836 55.000 26.57 11.06 43.25 4.26
2162 2609 0.604780 CGCTAATGGGCTAGCATGCT 60.605 55.000 25.99 25.99 43.84 3.79
2163 2610 0.886490 ACGCTAATGGGCTAGCATGC 60.886 55.000 18.24 10.51 43.84 4.06
2164 2611 1.532868 GAACGCTAATGGGCTAGCATG 59.467 52.381 18.24 0.51 43.84 4.06
2165 2612 1.140852 TGAACGCTAATGGGCTAGCAT 59.859 47.619 18.24 0.00 43.84 3.79
2166 2613 0.539518 TGAACGCTAATGGGCTAGCA 59.460 50.000 18.24 0.00 43.84 3.49
2167 2614 1.599542 CTTGAACGCTAATGGGCTAGC 59.400 52.381 6.04 6.04 40.83 3.42
2168 2615 1.599542 GCTTGAACGCTAATGGGCTAG 59.400 52.381 0.00 0.00 0.00 3.42
2169 2616 1.209504 AGCTTGAACGCTAATGGGCTA 59.790 47.619 0.00 0.00 38.76 3.93
2170 2617 0.035056 AGCTTGAACGCTAATGGGCT 60.035 50.000 0.00 0.00 38.76 5.19
2171 2618 0.378610 GAGCTTGAACGCTAATGGGC 59.621 55.000 0.00 0.00 41.08 5.36
2172 2619 2.029838 AGAGCTTGAACGCTAATGGG 57.970 50.000 0.00 0.00 41.08 4.00
2173 2620 4.033358 CACTAAGAGCTTGAACGCTAATGG 59.967 45.833 0.00 0.00 41.08 3.16
2174 2621 4.033358 CCACTAAGAGCTTGAACGCTAATG 59.967 45.833 0.00 0.00 41.08 1.90
2175 2622 4.184629 CCACTAAGAGCTTGAACGCTAAT 58.815 43.478 0.00 0.00 41.08 1.73
2176 2623 3.006537 ACCACTAAGAGCTTGAACGCTAA 59.993 43.478 0.00 0.00 41.08 3.09
2177 2624 2.561419 ACCACTAAGAGCTTGAACGCTA 59.439 45.455 0.00 0.00 41.08 4.26
2178 2625 1.344763 ACCACTAAGAGCTTGAACGCT 59.655 47.619 0.00 0.00 44.33 5.07
2179 2626 1.461127 CACCACTAAGAGCTTGAACGC 59.539 52.381 0.00 0.00 0.00 4.84
2180 2627 1.461127 GCACCACTAAGAGCTTGAACG 59.539 52.381 0.00 0.00 0.00 3.95
2181 2628 2.481952 CAGCACCACTAAGAGCTTGAAC 59.518 50.000 0.00 0.00 34.61 3.18
2182 2629 2.550855 CCAGCACCACTAAGAGCTTGAA 60.551 50.000 0.00 0.00 34.61 2.69
2183 2630 1.002430 CCAGCACCACTAAGAGCTTGA 59.998 52.381 0.00 0.00 34.61 3.02
2184 2631 1.271054 ACCAGCACCACTAAGAGCTTG 60.271 52.381 0.00 0.00 34.61 4.01
2185 2632 1.059913 ACCAGCACCACTAAGAGCTT 58.940 50.000 0.00 0.00 34.61 3.74
2186 2633 0.322975 CACCAGCACCACTAAGAGCT 59.677 55.000 0.00 0.00 37.95 4.09
2187 2634 1.301677 GCACCAGCACCACTAAGAGC 61.302 60.000 0.00 0.00 41.58 4.09
2188 2635 0.322975 AGCACCAGCACCACTAAGAG 59.677 55.000 0.00 0.00 45.49 2.85
2189 2636 0.764890 AAGCACCAGCACCACTAAGA 59.235 50.000 0.00 0.00 45.49 2.10
2190 2637 2.028112 TCTAAGCACCAGCACCACTAAG 60.028 50.000 0.00 0.00 45.49 2.18
2191 2638 1.974957 TCTAAGCACCAGCACCACTAA 59.025 47.619 0.00 0.00 45.49 2.24
2192 2639 1.550524 CTCTAAGCACCAGCACCACTA 59.449 52.381 0.00 0.00 45.49 2.74
2193 2640 0.322975 CTCTAAGCACCAGCACCACT 59.677 55.000 0.00 0.00 45.49 4.00
2194 2641 0.321671 TCTCTAAGCACCAGCACCAC 59.678 55.000 0.00 0.00 45.49 4.16
2195 2642 1.279496 ATCTCTAAGCACCAGCACCA 58.721 50.000 0.00 0.00 45.49 4.17
2196 2643 2.409948 AATCTCTAAGCACCAGCACC 57.590 50.000 0.00 0.00 45.49 5.01
2197 2644 4.773323 AAAAATCTCTAAGCACCAGCAC 57.227 40.909 0.00 0.00 45.49 4.40
2232 2679 9.355916 GACCATCTAAGATTAGCCCTTAAAAAT 57.644 33.333 0.00 0.00 0.00 1.82
2233 2680 8.557450 AGACCATCTAAGATTAGCCCTTAAAAA 58.443 33.333 0.00 0.00 0.00 1.94
2234 2681 8.102484 AGACCATCTAAGATTAGCCCTTAAAA 57.898 34.615 0.00 0.00 0.00 1.52
2235 2682 7.471539 CGAGACCATCTAAGATTAGCCCTTAAA 60.472 40.741 0.00 0.00 0.00 1.52
2236 2683 6.015350 CGAGACCATCTAAGATTAGCCCTTAA 60.015 42.308 0.00 0.00 0.00 1.85
2237 2684 5.477291 CGAGACCATCTAAGATTAGCCCTTA 59.523 44.000 0.00 0.00 0.00 2.69
2238 2685 4.282195 CGAGACCATCTAAGATTAGCCCTT 59.718 45.833 0.00 0.00 0.00 3.95
2239 2686 3.829601 CGAGACCATCTAAGATTAGCCCT 59.170 47.826 0.00 0.00 0.00 5.19
2240 2687 3.574826 ACGAGACCATCTAAGATTAGCCC 59.425 47.826 0.00 0.00 0.00 5.19
2241 2688 4.857509 ACGAGACCATCTAAGATTAGCC 57.142 45.455 0.00 0.00 0.00 3.93
2242 2689 6.981559 AGAAAACGAGACCATCTAAGATTAGC 59.018 38.462 0.00 0.00 0.00 3.09
2243 2690 8.934507 AAGAAAACGAGACCATCTAAGATTAG 57.065 34.615 0.00 0.00 0.00 1.73
2244 2691 9.720769 AAAAGAAAACGAGACCATCTAAGATTA 57.279 29.630 0.00 0.00 0.00 1.75
2245 2692 8.622948 AAAAGAAAACGAGACCATCTAAGATT 57.377 30.769 0.00 0.00 0.00 2.40
2246 2693 8.622948 AAAAAGAAAACGAGACCATCTAAGAT 57.377 30.769 0.00 0.00 0.00 2.40
2247 2694 7.095774 CGAAAAAGAAAACGAGACCATCTAAGA 60.096 37.037 0.00 0.00 0.00 2.10
2248 2695 7.010023 CGAAAAAGAAAACGAGACCATCTAAG 58.990 38.462 0.00 0.00 0.00 2.18
2249 2696 6.702723 TCGAAAAAGAAAACGAGACCATCTAA 59.297 34.615 0.00 0.00 0.00 2.10
2250 2697 6.218019 TCGAAAAAGAAAACGAGACCATCTA 58.782 36.000 0.00 0.00 0.00 1.98
2251 2698 5.054477 TCGAAAAAGAAAACGAGACCATCT 58.946 37.500 0.00 0.00 0.00 2.90
2252 2699 5.338614 TCGAAAAAGAAAACGAGACCATC 57.661 39.130 0.00 0.00 0.00 3.51
2253 2700 5.941948 ATCGAAAAAGAAAACGAGACCAT 57.058 34.783 0.00 0.00 38.12 3.55
2254 2701 8.537049 TTATATCGAAAAAGAAAACGAGACCA 57.463 30.769 0.00 0.00 38.12 4.02
2255 2702 9.983804 AATTATATCGAAAAAGAAAACGAGACC 57.016 29.630 0.00 0.00 38.12 3.85
2265 2712 9.362539 GGAGCGGTATAATTATATCGAAAAAGA 57.637 33.333 32.37 0.00 43.51 2.52
2266 2713 9.146984 TGGAGCGGTATAATTATATCGAAAAAG 57.853 33.333 32.37 10.76 43.51 2.27
2267 2714 9.491675 TTGGAGCGGTATAATTATATCGAAAAA 57.508 29.630 32.37 20.10 43.51 1.94
2268 2715 9.661563 ATTGGAGCGGTATAATTATATCGAAAA 57.338 29.630 32.37 21.67 43.51 2.29
2270 2717 9.961265 CTATTGGAGCGGTATAATTATATCGAA 57.039 33.333 32.37 21.16 43.51 3.71
2271 2718 8.573885 CCTATTGGAGCGGTATAATTATATCGA 58.426 37.037 32.37 17.13 39.03 3.59
2272 2719 7.328737 GCCTATTGGAGCGGTATAATTATATCG 59.671 40.741 26.68 26.68 39.37 2.92
2273 2720 8.368668 AGCCTATTGGAGCGGTATAATTATATC 58.631 37.037 8.40 7.04 34.57 1.63
2274 2721 8.150945 CAGCCTATTGGAGCGGTATAATTATAT 58.849 37.037 8.40 0.00 34.57 0.86
2275 2722 7.125204 ACAGCCTATTGGAGCGGTATAATTATA 59.875 37.037 0.81 0.81 35.60 0.98
2276 2723 6.070194 ACAGCCTATTGGAGCGGTATAATTAT 60.070 38.462 2.97 2.97 35.60 1.28
2277 2724 5.247564 ACAGCCTATTGGAGCGGTATAATTA 59.752 40.000 0.00 0.00 35.60 1.40
2278 2725 4.041691 ACAGCCTATTGGAGCGGTATAATT 59.958 41.667 0.00 0.00 35.60 1.40
2279 2726 3.583086 ACAGCCTATTGGAGCGGTATAAT 59.417 43.478 0.00 0.00 35.60 1.28
2280 2727 2.969950 ACAGCCTATTGGAGCGGTATAA 59.030 45.455 0.00 0.00 35.60 0.98
2281 2728 2.561419 GACAGCCTATTGGAGCGGTATA 59.439 50.000 0.00 0.00 37.54 1.47
2282 2729 1.344763 GACAGCCTATTGGAGCGGTAT 59.655 52.381 0.00 0.00 37.54 2.73
2283 2730 0.750850 GACAGCCTATTGGAGCGGTA 59.249 55.000 0.00 0.00 37.54 4.02
2284 2731 0.978146 AGACAGCCTATTGGAGCGGT 60.978 55.000 0.00 0.00 40.18 5.68
2285 2732 0.531532 CAGACAGCCTATTGGAGCGG 60.532 60.000 0.00 0.00 34.57 5.52
2286 2733 0.531532 CCAGACAGCCTATTGGAGCG 60.532 60.000 0.00 0.00 34.57 5.03
2287 2734 0.543749 ACCAGACAGCCTATTGGAGC 59.456 55.000 0.00 0.00 34.76 4.70
2288 2735 3.300388 TCTACCAGACAGCCTATTGGAG 58.700 50.000 0.00 0.00 34.76 3.86
2289 2736 3.398318 TCTACCAGACAGCCTATTGGA 57.602 47.619 0.00 0.00 34.76 3.53
2290 2737 4.384056 CATTCTACCAGACAGCCTATTGG 58.616 47.826 0.00 0.00 36.76 3.16
2291 2738 4.384056 CCATTCTACCAGACAGCCTATTG 58.616 47.826 0.00 0.00 0.00 1.90
2292 2739 3.181450 GCCATTCTACCAGACAGCCTATT 60.181 47.826 0.00 0.00 0.00 1.73
2293 2740 2.370189 GCCATTCTACCAGACAGCCTAT 59.630 50.000 0.00 0.00 0.00 2.57
2294 2741 1.762957 GCCATTCTACCAGACAGCCTA 59.237 52.381 0.00 0.00 0.00 3.93
2295 2742 0.543749 GCCATTCTACCAGACAGCCT 59.456 55.000 0.00 0.00 0.00 4.58
2296 2743 3.086733 GCCATTCTACCAGACAGCC 57.913 57.895 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.