Multiple sequence alignment - TraesCS6B01G330800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G330800 | chr6B | 100.000 | 4338 | 0 | 0 | 1 | 4338 | 580381050 | 580376713 | 0.000000e+00 | 8011 |
1 | TraesCS6B01G330800 | chr6D | 92.032 | 3878 | 225 | 44 | 156 | 3991 | 388339799 | 388335964 | 0.000000e+00 | 5373 |
2 | TraesCS6B01G330800 | chr6D | 84.404 | 327 | 28 | 15 | 4025 | 4338 | 388334533 | 388334217 | 2.540000e-77 | 300 |
3 | TraesCS6B01G330800 | chr6D | 79.767 | 257 | 41 | 6 | 2331 | 2578 | 388337317 | 388337063 | 4.460000e-40 | 176 |
4 | TraesCS6B01G330800 | chr6A | 86.381 | 1307 | 143 | 21 | 2235 | 3523 | 534963199 | 534961910 | 0.000000e+00 | 1395 |
5 | TraesCS6B01G330800 | chr6A | 82.840 | 1352 | 156 | 42 | 925 | 2231 | 534964561 | 534963241 | 0.000000e+00 | 1142 |
6 | TraesCS6B01G330800 | chr6A | 83.916 | 286 | 16 | 14 | 4051 | 4330 | 534961340 | 534961079 | 3.350000e-61 | 246 |
7 | TraesCS6B01G330800 | chr6A | 86.111 | 180 | 17 | 4 | 3824 | 3995 | 534961659 | 534961480 | 2.060000e-43 | 187 |
8 | TraesCS6B01G330800 | chr4A | 94.565 | 184 | 5 | 5 | 1 | 179 | 558700435 | 558700618 | 3.300000e-71 | 279 |
9 | TraesCS6B01G330800 | chr3A | 96.988 | 166 | 3 | 2 | 1 | 165 | 489281104 | 489281268 | 1.190000e-70 | 278 |
10 | TraesCS6B01G330800 | chr7A | 95.402 | 174 | 6 | 2 | 1 | 172 | 65427080 | 65426907 | 4.270000e-70 | 276 |
11 | TraesCS6B01G330800 | chr1A | 95.882 | 170 | 5 | 2 | 1 | 168 | 6143463 | 6143632 | 1.540000e-69 | 274 |
12 | TraesCS6B01G330800 | chr5B | 95.858 | 169 | 5 | 2 | 1 | 168 | 311069627 | 311069794 | 5.530000e-69 | 272 |
13 | TraesCS6B01G330800 | chr2D | 92.268 | 194 | 11 | 3 | 1 | 192 | 600084654 | 600084845 | 5.530000e-69 | 272 |
14 | TraesCS6B01G330800 | chr2D | 94.828 | 174 | 7 | 2 | 1 | 172 | 56833970 | 56833797 | 1.990000e-68 | 270 |
15 | TraesCS6B01G330800 | chr3D | 95.349 | 172 | 5 | 3 | 1 | 170 | 231110801 | 231110971 | 1.990000e-68 | 270 |
16 | TraesCS6B01G330800 | chr1D | 93.889 | 180 | 7 | 3 | 1 | 179 | 409952105 | 409952281 | 7.150000e-68 | 268 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G330800 | chr6B | 580376713 | 580381050 | 4337 | True | 8011.000000 | 8011 | 100.000 | 1 | 4338 | 1 | chr6B.!!$R1 | 4337 |
1 | TraesCS6B01G330800 | chr6D | 388334217 | 388339799 | 5582 | True | 1949.666667 | 5373 | 85.401 | 156 | 4338 | 3 | chr6D.!!$R1 | 4182 |
2 | TraesCS6B01G330800 | chr6A | 534961079 | 534964561 | 3482 | True | 742.500000 | 1395 | 84.812 | 925 | 4330 | 4 | chr6A.!!$R1 | 3405 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
30 | 31 | 0.038892 | ACGACTACATCAACCGCGTT | 60.039 | 50.0 | 4.92 | 0.00 | 0.00 | 4.84 | F |
52 | 53 | 0.095417 | GCTAACGCTTCCGCTTTCAG | 59.905 | 55.0 | 0.00 | 0.00 | 38.22 | 3.02 | F |
99 | 100 | 0.107456 | CCCCTCTCGTTGCTATGCAT | 59.893 | 55.0 | 3.79 | 3.79 | 38.76 | 3.96 | F |
119 | 120 | 0.179181 | CACCATGATCTTGCGTGTGC | 60.179 | 55.0 | 15.81 | 0.00 | 43.20 | 4.57 | F |
2066 | 2132 | 0.804364 | TGCTGGTGCTAGAAATTGCG | 59.196 | 50.0 | 0.00 | 0.00 | 40.48 | 4.85 | F |
2561 | 2667 | 0.951558 | ACGTGAAGAATGGTGCCAAC | 59.048 | 50.0 | 0.00 | 0.00 | 0.00 | 3.77 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1311 | 1331 | 0.541998 | TCCTCTTGGAGTTGGAGCGA | 60.542 | 55.000 | 0.0 | 0.0 | 37.46 | 4.93 | R |
1625 | 1672 | 0.832135 | TCGACCAACTCCAGGCTCTT | 60.832 | 55.000 | 0.0 | 0.0 | 0.00 | 2.85 | R |
2086 | 2152 | 1.275856 | TGCAACCTGGGAAATGAATGC | 59.724 | 47.619 | 0.0 | 0.0 | 0.00 | 3.56 | R |
2100 | 2166 | 2.024176 | TCTCGCCTTATCTTGCAACC | 57.976 | 50.000 | 0.0 | 0.0 | 0.00 | 3.77 | R |
2881 | 2996 | 0.110486 | TTCAACAGAACCTGGAGGGC | 59.890 | 55.000 | 0.0 | 0.0 | 40.27 | 5.19 | R |
4257 | 5892 | 0.033504 | TTGTCCCTGCTCGTCTGAAC | 59.966 | 55.000 | 0.0 | 0.0 | 0.00 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 2.861763 | CGTGAAGACGTACGACTACA | 57.138 | 50.000 | 24.41 | 13.28 | 42.54 | 2.74 |
20 | 21 | 3.380486 | CGTGAAGACGTACGACTACAT | 57.620 | 47.619 | 24.41 | 6.17 | 42.54 | 2.29 |
21 | 22 | 3.340552 | CGTGAAGACGTACGACTACATC | 58.659 | 50.000 | 24.41 | 15.62 | 42.54 | 3.06 |
22 | 23 | 3.181527 | CGTGAAGACGTACGACTACATCA | 60.182 | 47.826 | 24.41 | 18.00 | 42.54 | 3.07 |
23 | 24 | 4.667415 | CGTGAAGACGTACGACTACATCAA | 60.667 | 45.833 | 24.41 | 4.49 | 42.54 | 2.57 |
24 | 25 | 4.552660 | GTGAAGACGTACGACTACATCAAC | 59.447 | 45.833 | 24.41 | 11.90 | 0.00 | 3.18 |
25 | 26 | 3.754188 | AGACGTACGACTACATCAACC | 57.246 | 47.619 | 24.41 | 0.00 | 0.00 | 3.77 |
26 | 27 | 2.094894 | AGACGTACGACTACATCAACCG | 59.905 | 50.000 | 24.41 | 0.00 | 0.00 | 4.44 |
27 | 28 | 1.186030 | CGTACGACTACATCAACCGC | 58.814 | 55.000 | 10.44 | 0.00 | 0.00 | 5.68 |
28 | 29 | 1.186030 | GTACGACTACATCAACCGCG | 58.814 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
29 | 30 | 0.804364 | TACGACTACATCAACCGCGT | 59.196 | 50.000 | 4.92 | 0.00 | 0.00 | 6.01 |
30 | 31 | 0.038892 | ACGACTACATCAACCGCGTT | 60.039 | 50.000 | 4.92 | 0.00 | 0.00 | 4.84 |
31 | 32 | 0.365523 | CGACTACATCAACCGCGTTG | 59.634 | 55.000 | 4.92 | 10.14 | 43.99 | 4.10 |
32 | 33 | 1.425412 | GACTACATCAACCGCGTTGT | 58.575 | 50.000 | 16.97 | 9.99 | 43.23 | 3.32 |
33 | 34 | 1.126113 | GACTACATCAACCGCGTTGTG | 59.874 | 52.381 | 16.97 | 15.92 | 43.23 | 3.33 |
34 | 35 | 0.179225 | CTACATCAACCGCGTTGTGC | 60.179 | 55.000 | 16.97 | 0.00 | 43.23 | 4.57 |
35 | 36 | 0.601576 | TACATCAACCGCGTTGTGCT | 60.602 | 50.000 | 16.97 | 6.88 | 43.23 | 4.40 |
36 | 37 | 0.601576 | ACATCAACCGCGTTGTGCTA | 60.602 | 50.000 | 16.97 | 3.28 | 43.23 | 3.49 |
37 | 38 | 0.515127 | CATCAACCGCGTTGTGCTAA | 59.485 | 50.000 | 16.97 | 2.99 | 43.23 | 3.09 |
38 | 39 | 0.515564 | ATCAACCGCGTTGTGCTAAC | 59.484 | 50.000 | 16.97 | 0.00 | 43.23 | 2.34 |
39 | 40 | 1.438059 | CAACCGCGTTGTGCTAACG | 60.438 | 57.895 | 18.25 | 18.25 | 45.56 | 3.18 |
45 | 46 | 1.129809 | CGTTGTGCTAACGCTTCCG | 59.870 | 57.895 | 12.46 | 0.00 | 36.82 | 4.30 |
46 | 47 | 1.154469 | GTTGTGCTAACGCTTCCGC | 60.154 | 57.895 | 0.00 | 0.00 | 38.22 | 5.54 |
47 | 48 | 1.301401 | TTGTGCTAACGCTTCCGCT | 60.301 | 52.632 | 0.00 | 0.00 | 38.22 | 5.52 |
48 | 49 | 0.882927 | TTGTGCTAACGCTTCCGCTT | 60.883 | 50.000 | 0.00 | 0.00 | 38.22 | 4.68 |
49 | 50 | 0.882927 | TGTGCTAACGCTTCCGCTTT | 60.883 | 50.000 | 0.00 | 0.00 | 38.22 | 3.51 |
50 | 51 | 0.179222 | GTGCTAACGCTTCCGCTTTC | 60.179 | 55.000 | 0.00 | 0.00 | 38.22 | 2.62 |
51 | 52 | 0.601576 | TGCTAACGCTTCCGCTTTCA | 60.602 | 50.000 | 0.00 | 0.00 | 38.22 | 2.69 |
52 | 53 | 0.095417 | GCTAACGCTTCCGCTTTCAG | 59.905 | 55.000 | 0.00 | 0.00 | 38.22 | 3.02 |
53 | 54 | 1.429463 | CTAACGCTTCCGCTTTCAGT | 58.571 | 50.000 | 0.00 | 0.00 | 38.22 | 3.41 |
54 | 55 | 1.390463 | CTAACGCTTCCGCTTTCAGTC | 59.610 | 52.381 | 0.00 | 0.00 | 38.22 | 3.51 |
55 | 56 | 0.249911 | AACGCTTCCGCTTTCAGTCT | 60.250 | 50.000 | 0.00 | 0.00 | 38.22 | 3.24 |
56 | 57 | 0.601558 | ACGCTTCCGCTTTCAGTCTA | 59.398 | 50.000 | 0.00 | 0.00 | 38.22 | 2.59 |
57 | 58 | 0.992802 | CGCTTCCGCTTTCAGTCTAC | 59.007 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
58 | 59 | 0.992802 | GCTTCCGCTTTCAGTCTACG | 59.007 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
59 | 60 | 1.402456 | GCTTCCGCTTTCAGTCTACGA | 60.402 | 52.381 | 0.00 | 0.00 | 0.00 | 3.43 |
60 | 61 | 2.520979 | CTTCCGCTTTCAGTCTACGAG | 58.479 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
61 | 62 | 0.809385 | TCCGCTTTCAGTCTACGAGG | 59.191 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
62 | 63 | 0.179134 | CCGCTTTCAGTCTACGAGGG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
63 | 64 | 0.526662 | CGCTTTCAGTCTACGAGGGT | 59.473 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
64 | 65 | 1.741706 | CGCTTTCAGTCTACGAGGGTA | 59.258 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
65 | 66 | 2.477525 | CGCTTTCAGTCTACGAGGGTAC | 60.478 | 54.545 | 0.00 | 0.00 | 0.00 | 3.34 |
66 | 67 | 2.477525 | GCTTTCAGTCTACGAGGGTACG | 60.478 | 54.545 | 0.00 | 0.00 | 39.31 | 3.67 |
68 | 69 | 1.730501 | TCAGTCTACGAGGGTACGTG | 58.269 | 55.000 | 0.00 | 0.00 | 46.02 | 4.49 |
69 | 70 | 0.731417 | CAGTCTACGAGGGTACGTGG | 59.269 | 60.000 | 0.00 | 0.00 | 46.02 | 4.94 |
71 | 72 | 3.159298 | TCTACGAGGGTACGTGGAC | 57.841 | 57.895 | 0.00 | 0.00 | 45.53 | 4.02 |
72 | 73 | 0.324614 | TCTACGAGGGTACGTGGACA | 59.675 | 55.000 | 0.00 | 0.00 | 45.53 | 4.02 |
73 | 74 | 1.167851 | CTACGAGGGTACGTGGACAA | 58.832 | 55.000 | 0.00 | 0.00 | 44.98 | 3.18 |
74 | 75 | 0.881118 | TACGAGGGTACGTGGACAAC | 59.119 | 55.000 | 0.00 | 0.00 | 46.02 | 3.32 |
75 | 76 | 1.108727 | ACGAGGGTACGTGGACAACA | 61.109 | 55.000 | 0.00 | 0.00 | 44.84 | 3.33 |
76 | 77 | 0.665369 | CGAGGGTACGTGGACAACAC | 60.665 | 60.000 | 0.00 | 0.00 | 46.78 | 3.32 |
84 | 85 | 2.453242 | GTGGACAACACTCTCCCCT | 58.547 | 57.895 | 0.00 | 0.00 | 46.72 | 4.79 |
85 | 86 | 0.321996 | GTGGACAACACTCTCCCCTC | 59.678 | 60.000 | 0.00 | 0.00 | 46.72 | 4.30 |
86 | 87 | 0.191064 | TGGACAACACTCTCCCCTCT | 59.809 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
87 | 88 | 0.899019 | GGACAACACTCTCCCCTCTC | 59.101 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
88 | 89 | 0.528470 | GACAACACTCTCCCCTCTCG | 59.472 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
89 | 90 | 0.178958 | ACAACACTCTCCCCTCTCGT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
90 | 91 | 0.969894 | CAACACTCTCCCCTCTCGTT | 59.030 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
91 | 92 | 0.969894 | AACACTCTCCCCTCTCGTTG | 59.030 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
92 | 93 | 1.216710 | CACTCTCCCCTCTCGTTGC | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
93 | 94 | 1.077625 | ACTCTCCCCTCTCGTTGCT | 59.922 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
94 | 95 | 0.331954 | ACTCTCCCCTCTCGTTGCTA | 59.668 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
95 | 96 | 1.063567 | ACTCTCCCCTCTCGTTGCTAT | 60.064 | 52.381 | 0.00 | 0.00 | 0.00 | 2.97 |
96 | 97 | 1.339610 | CTCTCCCCTCTCGTTGCTATG | 59.660 | 57.143 | 0.00 | 0.00 | 0.00 | 2.23 |
97 | 98 | 0.249657 | CTCCCCTCTCGTTGCTATGC | 60.250 | 60.000 | 0.00 | 0.00 | 0.00 | 3.14 |
98 | 99 | 0.975556 | TCCCCTCTCGTTGCTATGCA | 60.976 | 55.000 | 0.00 | 0.00 | 36.47 | 3.96 |
99 | 100 | 0.107456 | CCCCTCTCGTTGCTATGCAT | 59.893 | 55.000 | 3.79 | 3.79 | 38.76 | 3.96 |
100 | 101 | 1.506493 | CCCTCTCGTTGCTATGCATC | 58.494 | 55.000 | 0.19 | 0.00 | 38.76 | 3.91 |
101 | 102 | 1.202568 | CCCTCTCGTTGCTATGCATCA | 60.203 | 52.381 | 0.19 | 0.00 | 38.76 | 3.07 |
102 | 103 | 1.863454 | CCTCTCGTTGCTATGCATCAC | 59.137 | 52.381 | 0.19 | 0.00 | 38.76 | 3.06 |
103 | 104 | 1.863454 | CTCTCGTTGCTATGCATCACC | 59.137 | 52.381 | 0.19 | 0.00 | 38.76 | 4.02 |
104 | 105 | 1.206849 | TCTCGTTGCTATGCATCACCA | 59.793 | 47.619 | 0.19 | 0.00 | 38.76 | 4.17 |
105 | 106 | 2.158914 | TCTCGTTGCTATGCATCACCAT | 60.159 | 45.455 | 0.19 | 0.00 | 38.76 | 3.55 |
106 | 107 | 1.941975 | TCGTTGCTATGCATCACCATG | 59.058 | 47.619 | 0.19 | 0.00 | 38.76 | 3.66 |
107 | 108 | 1.941975 | CGTTGCTATGCATCACCATGA | 59.058 | 47.619 | 0.19 | 0.00 | 38.76 | 3.07 |
108 | 109 | 2.551032 | CGTTGCTATGCATCACCATGAT | 59.449 | 45.455 | 0.19 | 0.00 | 38.76 | 2.45 |
109 | 110 | 3.364664 | CGTTGCTATGCATCACCATGATC | 60.365 | 47.826 | 0.19 | 0.00 | 38.76 | 2.92 |
110 | 111 | 3.782656 | TGCTATGCATCACCATGATCT | 57.217 | 42.857 | 0.19 | 0.00 | 34.28 | 2.75 |
111 | 112 | 4.094830 | TGCTATGCATCACCATGATCTT | 57.905 | 40.909 | 0.19 | 0.00 | 34.28 | 2.40 |
112 | 113 | 3.818773 | TGCTATGCATCACCATGATCTTG | 59.181 | 43.478 | 0.19 | 1.60 | 34.28 | 3.02 |
113 | 114 | 3.366070 | GCTATGCATCACCATGATCTTGC | 60.366 | 47.826 | 0.19 | 0.00 | 34.28 | 4.01 |
114 | 115 | 1.018910 | TGCATCACCATGATCTTGCG | 58.981 | 50.000 | 3.07 | 0.30 | 34.28 | 4.85 |
115 | 116 | 1.019673 | GCATCACCATGATCTTGCGT | 58.980 | 50.000 | 3.07 | 0.87 | 34.28 | 5.24 |
116 | 117 | 1.268386 | GCATCACCATGATCTTGCGTG | 60.268 | 52.381 | 17.02 | 17.02 | 34.28 | 5.34 |
117 | 118 | 2.011947 | CATCACCATGATCTTGCGTGT | 58.988 | 47.619 | 19.89 | 6.63 | 34.28 | 4.49 |
118 | 119 | 1.441738 | TCACCATGATCTTGCGTGTG | 58.558 | 50.000 | 19.89 | 14.96 | 0.00 | 3.82 |
119 | 120 | 0.179181 | CACCATGATCTTGCGTGTGC | 60.179 | 55.000 | 15.81 | 0.00 | 43.20 | 4.57 |
131 | 132 | 2.325509 | GCGTGTGCGTAGGAAATTTT | 57.674 | 45.000 | 0.00 | 0.00 | 40.81 | 1.82 |
132 | 133 | 2.657184 | GCGTGTGCGTAGGAAATTTTT | 58.343 | 42.857 | 0.00 | 0.00 | 40.81 | 1.94 |
133 | 134 | 2.403698 | GCGTGTGCGTAGGAAATTTTTG | 59.596 | 45.455 | 0.00 | 0.00 | 40.81 | 2.44 |
134 | 135 | 3.850374 | GCGTGTGCGTAGGAAATTTTTGA | 60.850 | 43.478 | 0.00 | 0.00 | 40.81 | 2.69 |
135 | 136 | 4.283678 | CGTGTGCGTAGGAAATTTTTGAA | 58.716 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
136 | 137 | 4.735822 | CGTGTGCGTAGGAAATTTTTGAAA | 59.264 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
137 | 138 | 5.401079 | CGTGTGCGTAGGAAATTTTTGAAAT | 59.599 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
138 | 139 | 6.074569 | CGTGTGCGTAGGAAATTTTTGAAATT | 60.075 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
139 | 140 | 7.113684 | CGTGTGCGTAGGAAATTTTTGAAATTA | 59.886 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
140 | 141 | 8.211838 | GTGTGCGTAGGAAATTTTTGAAATTAC | 58.788 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
141 | 142 | 8.138712 | TGTGCGTAGGAAATTTTTGAAATTACT | 58.861 | 29.630 | 0.00 | 4.52 | 0.00 | 2.24 |
142 | 143 | 9.615295 | GTGCGTAGGAAATTTTTGAAATTACTA | 57.385 | 29.630 | 0.00 | 3.76 | 0.00 | 1.82 |
143 | 144 | 9.615295 | TGCGTAGGAAATTTTTGAAATTACTAC | 57.385 | 29.630 | 18.73 | 18.73 | 32.65 | 2.73 |
144 | 145 | 8.782327 | GCGTAGGAAATTTTTGAAATTACTACG | 58.218 | 33.333 | 29.83 | 29.83 | 44.82 | 3.51 |
145 | 146 | 9.815936 | CGTAGGAAATTTTTGAAATTACTACGT | 57.184 | 29.630 | 28.22 | 0.00 | 41.82 | 3.57 |
148 | 149 | 9.687210 | AGGAAATTTTTGAAATTACTACGTTCC | 57.313 | 29.630 | 0.00 | 0.00 | 0.00 | 3.62 |
149 | 150 | 9.687210 | GGAAATTTTTGAAATTACTACGTTCCT | 57.313 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
153 | 154 | 9.673454 | ATTTTTGAAATTACTACGTTCCTCAAC | 57.327 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
154 | 155 | 7.789273 | TTTGAAATTACTACGTTCCTCAACA | 57.211 | 32.000 | 0.00 | 0.00 | 32.14 | 3.33 |
163 | 164 | 3.203716 | ACGTTCCTCAACACTTTCCTTC | 58.796 | 45.455 | 0.00 | 0.00 | 32.14 | 3.46 |
165 | 166 | 3.551846 | GTTCCTCAACACTTTCCTTCCA | 58.448 | 45.455 | 0.00 | 0.00 | 32.14 | 3.53 |
171 | 172 | 5.048434 | CCTCAACACTTTCCTTCCATCTTTC | 60.048 | 44.000 | 0.00 | 0.00 | 0.00 | 2.62 |
172 | 173 | 5.694995 | TCAACACTTTCCTTCCATCTTTCT | 58.305 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
173 | 174 | 6.837312 | TCAACACTTTCCTTCCATCTTTCTA | 58.163 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
180 | 181 | 9.593565 | ACTTTCCTTCCATCTTTCTAATTTTCT | 57.406 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
237 | 239 | 5.432885 | TTCTTGAACATTTTTCGAGGTCC | 57.567 | 39.130 | 0.97 | 0.00 | 32.17 | 4.46 |
247 | 249 | 7.368059 | ACATTTTTCGAGGTCCTTAACATTTC | 58.632 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
280 | 282 | 9.897744 | TCATAAACATTTCTCAACTTCATGAAC | 57.102 | 29.630 | 3.38 | 0.00 | 0.00 | 3.18 |
281 | 283 | 9.681692 | CATAAACATTTCTCAACTTCATGAACA | 57.318 | 29.630 | 3.38 | 0.00 | 0.00 | 3.18 |
282 | 284 | 7.992180 | AAACATTTCTCAACTTCATGAACAC | 57.008 | 32.000 | 3.38 | 0.00 | 0.00 | 3.32 |
283 | 285 | 6.949352 | ACATTTCTCAACTTCATGAACACT | 57.051 | 33.333 | 3.38 | 0.00 | 0.00 | 3.55 |
301 | 303 | 8.195617 | TGAACACTTTTTGGAAAATCATGAAC | 57.804 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
302 | 304 | 7.821359 | TGAACACTTTTTGGAAAATCATGAACA | 59.179 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
303 | 305 | 8.558973 | AACACTTTTTGGAAAATCATGAACAA | 57.441 | 26.923 | 0.00 | 0.00 | 0.00 | 2.83 |
362 | 367 | 6.831769 | ACATTTTATGACACTCGTGAACATC | 58.168 | 36.000 | 3.74 | 0.00 | 34.92 | 3.06 |
388 | 396 | 7.290118 | GTTTTGAATTGGTGAATTTTGATCGG | 58.710 | 34.615 | 0.00 | 0.00 | 31.58 | 4.18 |
390 | 398 | 2.627863 | TTGGTGAATTTTGATCGGCG | 57.372 | 45.000 | 0.00 | 0.00 | 0.00 | 6.46 |
401 | 409 | 7.543868 | TGAATTTTGATCGGCGAACATATTTTT | 59.456 | 29.630 | 20.51 | 10.10 | 0.00 | 1.94 |
454 | 462 | 9.932699 | TTACAAACAATTTTTGAATCATTGCAG | 57.067 | 25.926 | 15.45 | 0.00 | 32.08 | 4.41 |
649 | 659 | 9.834628 | TGTGAAAAATATTTTGAATCTACGGAC | 57.165 | 29.630 | 14.04 | 3.71 | 0.00 | 4.79 |
793 | 803 | 8.878769 | GCATTTTTGTAATCCCGAATTATTTGT | 58.121 | 29.630 | 0.00 | 0.00 | 32.53 | 2.83 |
849 | 862 | 8.851960 | AAGGAAAAGAGAAAAACGAAATGTAC | 57.148 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
860 | 873 | 3.822940 | ACGAAATGTACAAAACAGGGGA | 58.177 | 40.909 | 0.00 | 0.00 | 42.70 | 4.81 |
949 | 969 | 1.967597 | GCGCCGTAGAGAGTTTTGCC | 61.968 | 60.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1311 | 1331 | 4.538283 | CTCGGCGTGCTCGATCGT | 62.538 | 66.667 | 15.94 | 0.00 | 39.71 | 3.73 |
1438 | 1458 | 3.616219 | ACTGGCTGTGTTTTGACACTTA | 58.384 | 40.909 | 10.59 | 0.00 | 40.97 | 2.24 |
1523 | 1556 | 8.877864 | ATTATATGAGGAGGTTTTGTTGTTGA | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
1560 | 1601 | 3.402628 | TTCTTAGTGGTCTCTGGTTGC | 57.597 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
1581 | 1622 | 2.489329 | CGGAATTGCATTGCTATAGGGG | 59.511 | 50.000 | 10.49 | 0.00 | 0.00 | 4.79 |
1585 | 1626 | 3.805066 | TTGCATTGCTATAGGGGCATA | 57.195 | 42.857 | 10.49 | 0.00 | 39.54 | 3.14 |
1625 | 1672 | 1.885887 | GTGGCCAGACTGTTATTTGCA | 59.114 | 47.619 | 5.11 | 0.00 | 0.00 | 4.08 |
1633 | 1680 | 3.755378 | AGACTGTTATTTGCAAGAGCCTG | 59.245 | 43.478 | 0.00 | 0.00 | 41.13 | 4.85 |
1684 | 1737 | 1.065401 | ACAATGCACTGGTTCGTGTTG | 59.935 | 47.619 | 0.00 | 0.00 | 37.24 | 3.33 |
1782 | 1840 | 6.754209 | GGTCTATTGTCTGTGATAAGTGAGTG | 59.246 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
1791 | 1849 | 4.221924 | TGTGATAAGTGAGTGAAATCGGGA | 59.778 | 41.667 | 0.00 | 0.00 | 0.00 | 5.14 |
1914 | 1980 | 6.493189 | AGGATAGAAAAGAGAGATGGAACC | 57.507 | 41.667 | 0.00 | 0.00 | 0.00 | 3.62 |
1917 | 1983 | 4.566426 | AGAAAAGAGAGATGGAACCCAG | 57.434 | 45.455 | 0.00 | 0.00 | 36.75 | 4.45 |
1978 | 2044 | 6.261603 | TCTGCATTCAACATATTAGCCTTCTG | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2066 | 2132 | 0.804364 | TGCTGGTGCTAGAAATTGCG | 59.196 | 50.000 | 0.00 | 0.00 | 40.48 | 4.85 |
2081 | 2147 | 5.931146 | AGAAATTGCGTAATTGAATTGGCAA | 59.069 | 32.000 | 23.56 | 23.56 | 42.72 | 4.52 |
2082 | 2148 | 6.594937 | AGAAATTGCGTAATTGAATTGGCAAT | 59.405 | 30.769 | 25.07 | 25.07 | 46.26 | 3.56 |
2083 | 2149 | 6.740411 | AATTGCGTAATTGAATTGGCAATT | 57.260 | 29.167 | 29.88 | 29.88 | 46.60 | 2.32 |
2084 | 2150 | 6.740411 | ATTGCGTAATTGAATTGGCAATTT | 57.260 | 29.167 | 25.02 | 12.69 | 43.83 | 1.82 |
2085 | 2151 | 5.527511 | TGCGTAATTGAATTGGCAATTTG | 57.472 | 34.783 | 25.02 | 11.06 | 43.83 | 2.32 |
2086 | 2152 | 4.391216 | TGCGTAATTGAATTGGCAATTTGG | 59.609 | 37.500 | 25.02 | 11.19 | 43.83 | 3.28 |
2087 | 2153 | 4.727448 | GCGTAATTGAATTGGCAATTTGGC | 60.727 | 41.667 | 25.02 | 15.53 | 43.83 | 4.52 |
2100 | 2166 | 3.375922 | GCAATTTGGCATTCATTTCCCAG | 59.624 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
2103 | 2170 | 2.323999 | TGGCATTCATTTCCCAGGTT | 57.676 | 45.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2104 | 2171 | 1.901159 | TGGCATTCATTTCCCAGGTTG | 59.099 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
2167 | 2235 | 8.367660 | TGTGACTATTATCCTGTTCTTCTTCT | 57.632 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
2242 | 2348 | 3.181329 | TCTTGCAGGAGGAAATAGGTCA | 58.819 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2419 | 2525 | 9.703892 | CTTCTGATAATATCCCTAGTTTCACTG | 57.296 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
2561 | 2667 | 0.951558 | ACGTGAAGAATGGTGCCAAC | 59.048 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2587 | 2693 | 3.828451 | CCAGGTTCTGTTGGATGTTCATT | 59.172 | 43.478 | 0.00 | 0.00 | 36.55 | 2.57 |
2647 | 2760 | 7.414436 | TGCAAAATTACTTATCTGCGGAATAC | 58.586 | 34.615 | 0.00 | 0.00 | 32.45 | 1.89 |
2666 | 2779 | 7.363431 | GGAATACCTTGTTAATATGCTTGAGC | 58.637 | 38.462 | 0.00 | 0.00 | 42.50 | 4.26 |
2881 | 2996 | 2.163010 | GTGACATGAAGAATGGTGCCAG | 59.837 | 50.000 | 0.00 | 0.00 | 40.94 | 4.85 |
2936 | 3051 | 2.753966 | CGCTGCAAATCCTGGTCCG | 61.754 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
2968 | 3083 | 3.771798 | CCGAGCTTCTAAGGTAACAGAC | 58.228 | 50.000 | 0.00 | 0.00 | 36.78 | 3.51 |
3026 | 3141 | 2.989422 | AACAAAAGCATACCGAGCAC | 57.011 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3028 | 3143 | 1.535462 | ACAAAAGCATACCGAGCACAC | 59.465 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
3241 | 3357 | 2.557920 | AGAAGAAGGGTTCTGCTGTG | 57.442 | 50.000 | 0.00 | 0.00 | 44.18 | 3.66 |
3292 | 3408 | 0.734309 | GGCAATCGTCACATGCATCA | 59.266 | 50.000 | 0.00 | 0.00 | 41.80 | 3.07 |
3365 | 3481 | 2.670934 | CAGGACTGCTGGTGCACC | 60.671 | 66.667 | 29.67 | 29.67 | 45.31 | 5.01 |
3368 | 3484 | 2.203337 | GACTGCTGGTGCACCCAA | 60.203 | 61.111 | 32.62 | 14.74 | 44.65 | 4.12 |
3374 | 3490 | 0.322456 | GCTGGTGCACCCAATCTGTA | 60.322 | 55.000 | 32.62 | 10.79 | 44.65 | 2.74 |
3395 | 3511 | 9.964354 | TCTGTAAACTGTACACTAGGTAGAATA | 57.036 | 33.333 | 0.00 | 0.00 | 31.13 | 1.75 |
3411 | 3527 | 5.221263 | GGTAGAATACAATCTCTTCGCCTGA | 60.221 | 44.000 | 0.00 | 0.00 | 45.43 | 3.86 |
3419 | 3535 | 2.171840 | TCTCTTCGCCTGAGTAAGCTT | 58.828 | 47.619 | 3.48 | 3.48 | 33.59 | 3.74 |
3421 | 3537 | 0.723981 | CTTCGCCTGAGTAAGCTTGC | 59.276 | 55.000 | 9.86 | 8.07 | 0.00 | 4.01 |
3423 | 3539 | 0.670546 | TCGCCTGAGTAAGCTTGCAC | 60.671 | 55.000 | 17.21 | 11.09 | 0.00 | 4.57 |
3442 | 3558 | 2.177580 | CACTGCGTCACGGTTGGTT | 61.178 | 57.895 | 0.00 | 0.00 | 34.87 | 3.67 |
3444 | 3560 | 1.885388 | CTGCGTCACGGTTGGTTCA | 60.885 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
3446 | 3562 | 1.278637 | GCGTCACGGTTGGTTCAAG | 59.721 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
3447 | 3563 | 1.155424 | GCGTCACGGTTGGTTCAAGA | 61.155 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3489 | 3606 | 0.803768 | CTCTGCGACACTCGGATTGG | 60.804 | 60.000 | 0.29 | 0.00 | 40.01 | 3.16 |
3490 | 3607 | 1.079819 | CTGCGACACTCGGATTGGT | 60.080 | 57.895 | 0.29 | 0.00 | 40.01 | 3.67 |
3491 | 3608 | 1.078759 | CTGCGACACTCGGATTGGTC | 61.079 | 60.000 | 0.29 | 0.00 | 40.01 | 4.02 |
3493 | 3610 | 1.078759 | GCGACACTCGGATTGGTCTG | 61.079 | 60.000 | 0.29 | 0.00 | 40.84 | 3.51 |
3494 | 3611 | 0.526211 | CGACACTCGGATTGGTCTGA | 59.474 | 55.000 | 0.29 | 0.00 | 37.41 | 3.27 |
3495 | 3612 | 1.135139 | CGACACTCGGATTGGTCTGAT | 59.865 | 52.381 | 0.29 | 0.00 | 39.00 | 2.90 |
3523 | 3641 | 6.197364 | TGTGTTCGTTAAAATGTTTCCAGT | 57.803 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
3547 | 3688 | 0.967380 | CGGGGCCTCTTTTGCTTCAT | 60.967 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3549 | 3690 | 1.549203 | GGGCCTCTTTTGCTTCATGA | 58.451 | 50.000 | 0.84 | 0.00 | 0.00 | 3.07 |
3550 | 3691 | 1.475682 | GGGCCTCTTTTGCTTCATGAG | 59.524 | 52.381 | 0.84 | 0.00 | 0.00 | 2.90 |
3551 | 3692 | 1.475682 | GGCCTCTTTTGCTTCATGAGG | 59.524 | 52.381 | 0.00 | 0.00 | 45.05 | 3.86 |
3552 | 3693 | 2.935481 | CCTCTTTTGCTTCATGAGGC | 57.065 | 50.000 | 22.04 | 22.04 | 37.98 | 4.70 |
3580 | 3721 | 4.202090 | CCTGTATCTACCCGTAACTGAACC | 60.202 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3584 | 3725 | 0.038343 | TACCCGTAACTGAACCGTGC | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3586 | 3727 | 2.030958 | CCGTAACTGAACCGTGCCC | 61.031 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
3599 | 3740 | 1.068434 | CCGTGCCCTGTGTGAAATTTT | 59.932 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
3604 | 3745 | 2.758009 | CCCTGTGTGAAATTTTGGCAG | 58.242 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
3613 | 3754 | 6.205270 | GTGTGAAATTTTGGCAGAATTCCAAT | 59.795 | 34.615 | 15.39 | 1.25 | 42.11 | 3.16 |
3617 | 3758 | 7.501559 | TGAAATTTTGGCAGAATTCCAATGAAA | 59.498 | 29.630 | 15.39 | 0.00 | 42.11 | 2.69 |
3619 | 3760 | 5.549742 | TTTGGCAGAATTCCAATGAAACT | 57.450 | 34.783 | 0.65 | 0.00 | 42.11 | 2.66 |
3621 | 3762 | 4.885413 | TGGCAGAATTCCAATGAAACTTG | 58.115 | 39.130 | 0.65 | 0.00 | 33.32 | 3.16 |
3627 | 3768 | 4.582701 | ATTCCAATGAAACTTGCGAACA | 57.417 | 36.364 | 0.00 | 0.00 | 33.32 | 3.18 |
3629 | 3770 | 4.582701 | TCCAATGAAACTTGCGAACAAT | 57.417 | 36.364 | 0.00 | 0.00 | 34.61 | 2.71 |
3646 | 3787 | 6.513180 | CGAACAATAGAAGCCCTGAATACTA | 58.487 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3667 | 3808 | 2.566833 | ACTGGTTGTGCTTCATGCTA | 57.433 | 45.000 | 0.00 | 0.00 | 43.37 | 3.49 |
3693 | 3839 | 7.465900 | AATTAGGGGACATGGAAATCTTAGA | 57.534 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3695 | 3841 | 8.757307 | ATTAGGGGACATGGAAATCTTAGATA | 57.243 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
3703 | 3849 | 9.660180 | GACATGGAAATCTTAGATAATAGTCCC | 57.340 | 37.037 | 0.00 | 0.00 | 0.00 | 4.46 |
3784 | 3930 | 0.988063 | GATCAAGGGGAGGGATAGGC | 59.012 | 60.000 | 0.00 | 0.00 | 0.00 | 3.93 |
3812 | 3958 | 9.346725 | GTTTTAGCAAATCTGGAGATGTTAAAG | 57.653 | 33.333 | 0.00 | 0.00 | 34.49 | 1.85 |
3813 | 3959 | 8.635765 | TTTAGCAAATCTGGAGATGTTAAAGT | 57.364 | 30.769 | 0.00 | 0.00 | 34.49 | 2.66 |
3814 | 3960 | 6.506500 | AGCAAATCTGGAGATGTTAAAGTG | 57.493 | 37.500 | 0.00 | 0.00 | 34.49 | 3.16 |
3815 | 3961 | 6.006449 | AGCAAATCTGGAGATGTTAAAGTGT | 58.994 | 36.000 | 0.00 | 0.00 | 34.49 | 3.55 |
3816 | 3962 | 6.072286 | AGCAAATCTGGAGATGTTAAAGTGTG | 60.072 | 38.462 | 0.00 | 0.00 | 34.49 | 3.82 |
3817 | 3963 | 6.294176 | GCAAATCTGGAGATGTTAAAGTGTGT | 60.294 | 38.462 | 0.00 | 0.00 | 34.49 | 3.72 |
3895 | 4045 | 1.205893 | ACGGAGAAGAACAGATCCAGC | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
3984 | 4141 | 1.604604 | CTTGGGACACGTTCATGGTT | 58.395 | 50.000 | 0.00 | 0.00 | 39.29 | 3.67 |
4028 | 5583 | 8.382405 | TCCATCATATTTGTTATAGCTGGCTTA | 58.618 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
4042 | 5597 | 3.371898 | GCTGGCTTAAAATTCCACAATGC | 59.628 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
4046 | 5601 | 6.105333 | TGGCTTAAAATTCCACAATGCATAC | 58.895 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
4048 | 5603 | 6.035975 | GGCTTAAAATTCCACAATGCATACAC | 59.964 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
4071 | 5678 | 7.180408 | ACACCATCTTTAGCTTAAGACCTTCTA | 59.820 | 37.037 | 16.88 | 0.00 | 37.00 | 2.10 |
4076 | 5683 | 8.834004 | TCTTTAGCTTAAGACCTTCTACCATA | 57.166 | 34.615 | 11.03 | 0.00 | 0.00 | 2.74 |
4077 | 5684 | 9.435570 | TCTTTAGCTTAAGACCTTCTACCATAT | 57.564 | 33.333 | 11.03 | 0.00 | 0.00 | 1.78 |
4078 | 5685 | 9.482627 | CTTTAGCTTAAGACCTTCTACCATATG | 57.517 | 37.037 | 6.63 | 0.00 | 0.00 | 1.78 |
4079 | 5686 | 8.548880 | TTAGCTTAAGACCTTCTACCATATGT | 57.451 | 34.615 | 6.67 | 0.00 | 0.00 | 2.29 |
4104 | 5716 | 6.174720 | TGTGATCGGATCTTAAGGCTATTT | 57.825 | 37.500 | 18.16 | 0.00 | 0.00 | 1.40 |
4106 | 5718 | 5.346281 | GTGATCGGATCTTAAGGCTATTTCG | 59.654 | 44.000 | 18.16 | 0.00 | 0.00 | 3.46 |
4107 | 5719 | 5.243060 | TGATCGGATCTTAAGGCTATTTCGA | 59.757 | 40.000 | 18.16 | 4.12 | 0.00 | 3.71 |
4108 | 5720 | 5.723672 | TCGGATCTTAAGGCTATTTCGAT | 57.276 | 39.130 | 1.85 | 0.00 | 0.00 | 3.59 |
4110 | 5722 | 5.243060 | TCGGATCTTAAGGCTATTTCGATCA | 59.757 | 40.000 | 1.85 | 0.00 | 0.00 | 2.92 |
4130 | 5750 | 8.595533 | TCGATCATTTTCTTTCGAATTCAGTAG | 58.404 | 33.333 | 6.22 | 0.00 | 37.64 | 2.57 |
4131 | 5751 | 8.383619 | CGATCATTTTCTTTCGAATTCAGTAGT | 58.616 | 33.333 | 6.22 | 0.00 | 33.59 | 2.73 |
4134 | 5754 | 8.221100 | TCATTTTCTTTCGAATTCAGTAGTTCG | 58.779 | 33.333 | 6.22 | 1.44 | 46.20 | 3.95 |
4135 | 5755 | 7.473027 | TTTTCTTTCGAATTCAGTAGTTCGT | 57.527 | 32.000 | 6.22 | 0.00 | 45.34 | 3.85 |
4136 | 5756 | 8.578308 | TTTTCTTTCGAATTCAGTAGTTCGTA | 57.422 | 30.769 | 6.22 | 0.00 | 45.34 | 3.43 |
4137 | 5757 | 8.752766 | TTTCTTTCGAATTCAGTAGTTCGTAT | 57.247 | 30.769 | 6.22 | 0.00 | 45.34 | 3.06 |
4138 | 5758 | 7.966157 | TCTTTCGAATTCAGTAGTTCGTATC | 57.034 | 36.000 | 6.22 | 0.00 | 45.34 | 2.24 |
4139 | 5759 | 6.685828 | TCTTTCGAATTCAGTAGTTCGTATCG | 59.314 | 38.462 | 6.22 | 0.00 | 45.34 | 2.92 |
4140 | 5760 | 5.475273 | TCGAATTCAGTAGTTCGTATCGT | 57.525 | 39.130 | 6.22 | 0.00 | 45.34 | 3.73 |
4141 | 5761 | 6.588348 | TCGAATTCAGTAGTTCGTATCGTA | 57.412 | 37.500 | 6.22 | 0.00 | 45.34 | 3.43 |
4145 | 5765 | 7.585210 | CGAATTCAGTAGTTCGTATCGTATGAA | 59.415 | 37.037 | 6.22 | 0.00 | 41.52 | 2.57 |
4153 | 5788 | 9.277565 | GTAGTTCGTATCGTATGAAAACAGTAA | 57.722 | 33.333 | 0.00 | 0.00 | 35.63 | 2.24 |
4155 | 5790 | 7.487189 | AGTTCGTATCGTATGAAAACAGTAAGG | 59.513 | 37.037 | 0.00 | 0.00 | 35.63 | 2.69 |
4176 | 5811 | 3.585862 | GAGATACTTGGAACGAGCAACA | 58.414 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
4215 | 5850 | 4.008933 | GCACGGCCCTGTCTGTCT | 62.009 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
4216 | 5851 | 2.047844 | CACGGCCCTGTCTGTCTG | 60.048 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4257 | 5892 | 6.605849 | CGTCCATTGAATAATGCAGGATTAG | 58.394 | 40.000 | 0.52 | 0.00 | 41.87 | 1.73 |
4287 | 5922 | 1.679139 | CAGGGACAAAACTGCACAGA | 58.321 | 50.000 | 4.31 | 0.00 | 0.00 | 3.41 |
4288 | 5923 | 1.334869 | CAGGGACAAAACTGCACAGAC | 59.665 | 52.381 | 4.31 | 0.00 | 0.00 | 3.51 |
4293 | 5928 | 4.494484 | GGACAAAACTGCACAGACTTTTT | 58.506 | 39.130 | 4.31 | 0.00 | 0.00 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 4.332186 | TGATGTAGTCGTACGTCTTCAC | 57.668 | 45.455 | 19.61 | 13.19 | 43.23 | 3.18 |
2 | 3 | 4.378770 | GGTTGATGTAGTCGTACGTCTTCA | 60.379 | 45.833 | 19.61 | 19.79 | 43.23 | 3.02 |
3 | 4 | 4.094212 | GGTTGATGTAGTCGTACGTCTTC | 58.906 | 47.826 | 19.61 | 15.02 | 43.23 | 2.87 |
4 | 5 | 3.425359 | CGGTTGATGTAGTCGTACGTCTT | 60.425 | 47.826 | 19.61 | 2.66 | 43.23 | 3.01 |
5 | 6 | 2.094894 | CGGTTGATGTAGTCGTACGTCT | 59.905 | 50.000 | 18.54 | 18.54 | 43.23 | 4.18 |
6 | 7 | 2.434761 | CGGTTGATGTAGTCGTACGTC | 58.565 | 52.381 | 16.05 | 10.06 | 43.16 | 4.34 |
7 | 8 | 1.466360 | GCGGTTGATGTAGTCGTACGT | 60.466 | 52.381 | 16.05 | 0.00 | 30.95 | 3.57 |
8 | 9 | 1.186030 | GCGGTTGATGTAGTCGTACG | 58.814 | 55.000 | 9.53 | 9.53 | 30.95 | 3.67 |
9 | 10 | 1.186030 | CGCGGTTGATGTAGTCGTAC | 58.814 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
10 | 11 | 0.804364 | ACGCGGTTGATGTAGTCGTA | 59.196 | 50.000 | 12.47 | 0.00 | 0.00 | 3.43 |
11 | 12 | 0.038892 | AACGCGGTTGATGTAGTCGT | 60.039 | 50.000 | 12.47 | 0.00 | 0.00 | 4.34 |
12 | 13 | 0.365523 | CAACGCGGTTGATGTAGTCG | 59.634 | 55.000 | 12.47 | 0.00 | 45.28 | 4.18 |
13 | 14 | 1.126113 | CACAACGCGGTTGATGTAGTC | 59.874 | 52.381 | 22.26 | 0.00 | 45.28 | 2.59 |
14 | 15 | 1.144969 | CACAACGCGGTTGATGTAGT | 58.855 | 50.000 | 22.26 | 2.04 | 45.28 | 2.73 |
15 | 16 | 0.179225 | GCACAACGCGGTTGATGTAG | 60.179 | 55.000 | 22.26 | 1.41 | 45.28 | 2.74 |
16 | 17 | 0.601576 | AGCACAACGCGGTTGATGTA | 60.602 | 50.000 | 22.26 | 0.00 | 45.28 | 2.29 |
17 | 18 | 0.601576 | TAGCACAACGCGGTTGATGT | 60.602 | 50.000 | 22.26 | 11.72 | 45.28 | 3.06 |
18 | 19 | 0.515127 | TTAGCACAACGCGGTTGATG | 59.485 | 50.000 | 22.26 | 17.39 | 45.28 | 3.07 |
19 | 20 | 0.515564 | GTTAGCACAACGCGGTTGAT | 59.484 | 50.000 | 22.26 | 13.46 | 45.28 | 2.57 |
20 | 21 | 1.823260 | CGTTAGCACAACGCGGTTGA | 61.823 | 55.000 | 22.26 | 3.38 | 45.28 | 3.18 |
40 | 41 | 2.520979 | CTCGTAGACTGAAAGCGGAAG | 58.479 | 52.381 | 0.00 | 0.00 | 37.60 | 3.46 |
41 | 42 | 1.201647 | CCTCGTAGACTGAAAGCGGAA | 59.798 | 52.381 | 0.00 | 0.00 | 37.60 | 4.30 |
42 | 43 | 0.809385 | CCTCGTAGACTGAAAGCGGA | 59.191 | 55.000 | 0.00 | 0.00 | 37.60 | 5.54 |
43 | 44 | 0.179134 | CCCTCGTAGACTGAAAGCGG | 60.179 | 60.000 | 0.00 | 0.00 | 37.60 | 5.52 |
44 | 45 | 0.526662 | ACCCTCGTAGACTGAAAGCG | 59.473 | 55.000 | 0.00 | 0.00 | 37.60 | 4.68 |
45 | 46 | 2.477525 | CGTACCCTCGTAGACTGAAAGC | 60.478 | 54.545 | 0.00 | 0.00 | 37.60 | 3.51 |
46 | 47 | 2.746362 | ACGTACCCTCGTAGACTGAAAG | 59.254 | 50.000 | 0.00 | 0.00 | 42.35 | 2.62 |
47 | 48 | 2.485426 | CACGTACCCTCGTAGACTGAAA | 59.515 | 50.000 | 0.00 | 0.00 | 42.27 | 2.69 |
48 | 49 | 2.079158 | CACGTACCCTCGTAGACTGAA | 58.921 | 52.381 | 0.00 | 0.00 | 42.27 | 3.02 |
49 | 50 | 1.676916 | CCACGTACCCTCGTAGACTGA | 60.677 | 57.143 | 0.00 | 0.00 | 42.27 | 3.41 |
50 | 51 | 0.731417 | CCACGTACCCTCGTAGACTG | 59.269 | 60.000 | 0.00 | 0.00 | 42.27 | 3.51 |
51 | 52 | 0.615331 | TCCACGTACCCTCGTAGACT | 59.385 | 55.000 | 0.00 | 0.00 | 42.27 | 3.24 |
52 | 53 | 0.729690 | GTCCACGTACCCTCGTAGAC | 59.270 | 60.000 | 0.00 | 2.79 | 42.50 | 2.59 |
53 | 54 | 0.324614 | TGTCCACGTACCCTCGTAGA | 59.675 | 55.000 | 0.00 | 0.00 | 42.27 | 2.59 |
54 | 55 | 1.135575 | GTTGTCCACGTACCCTCGTAG | 60.136 | 57.143 | 0.00 | 0.00 | 42.27 | 3.51 |
55 | 56 | 0.881118 | GTTGTCCACGTACCCTCGTA | 59.119 | 55.000 | 0.00 | 0.00 | 42.27 | 3.43 |
56 | 57 | 1.108727 | TGTTGTCCACGTACCCTCGT | 61.109 | 55.000 | 0.00 | 0.00 | 45.10 | 4.18 |
57 | 58 | 0.665369 | GTGTTGTCCACGTACCCTCG | 60.665 | 60.000 | 0.00 | 0.00 | 33.61 | 4.63 |
58 | 59 | 3.206090 | GTGTTGTCCACGTACCCTC | 57.794 | 57.895 | 0.00 | 0.00 | 33.61 | 4.30 |
63 | 64 | 4.748514 | AGGGGAGAGTGTTGTCCACGTA | 62.749 | 54.545 | 0.00 | 0.00 | 44.77 | 3.57 |
65 | 66 | 1.472662 | AGGGGAGAGTGTTGTCCACG | 61.473 | 60.000 | 0.00 | 0.00 | 44.77 | 4.94 |
66 | 67 | 0.321996 | GAGGGGAGAGTGTTGTCCAC | 59.678 | 60.000 | 0.00 | 0.00 | 40.47 | 4.02 |
67 | 68 | 0.191064 | AGAGGGGAGAGTGTTGTCCA | 59.809 | 55.000 | 0.00 | 0.00 | 38.50 | 4.02 |
68 | 69 | 0.899019 | GAGAGGGGAGAGTGTTGTCC | 59.101 | 60.000 | 0.00 | 0.00 | 36.03 | 4.02 |
69 | 70 | 0.528470 | CGAGAGGGGAGAGTGTTGTC | 59.472 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
70 | 71 | 0.178958 | ACGAGAGGGGAGAGTGTTGT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
71 | 72 | 0.969894 | AACGAGAGGGGAGAGTGTTG | 59.030 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
72 | 73 | 0.969894 | CAACGAGAGGGGAGAGTGTT | 59.030 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
73 | 74 | 1.536943 | GCAACGAGAGGGGAGAGTGT | 61.537 | 60.000 | 0.00 | 0.00 | 0.00 | 3.55 |
74 | 75 | 1.216710 | GCAACGAGAGGGGAGAGTG | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
75 | 76 | 0.331954 | TAGCAACGAGAGGGGAGAGT | 59.668 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
76 | 77 | 1.339610 | CATAGCAACGAGAGGGGAGAG | 59.660 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
77 | 78 | 1.403814 | CATAGCAACGAGAGGGGAGA | 58.596 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
78 | 79 | 0.249657 | GCATAGCAACGAGAGGGGAG | 60.250 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
79 | 80 | 0.975556 | TGCATAGCAACGAGAGGGGA | 60.976 | 55.000 | 0.00 | 0.00 | 34.76 | 4.81 |
80 | 81 | 0.107456 | ATGCATAGCAACGAGAGGGG | 59.893 | 55.000 | 0.00 | 0.00 | 43.62 | 4.79 |
81 | 82 | 1.202568 | TGATGCATAGCAACGAGAGGG | 60.203 | 52.381 | 0.00 | 0.00 | 43.62 | 4.30 |
82 | 83 | 1.863454 | GTGATGCATAGCAACGAGAGG | 59.137 | 52.381 | 0.00 | 0.00 | 43.62 | 3.69 |
83 | 84 | 1.863454 | GGTGATGCATAGCAACGAGAG | 59.137 | 52.381 | 0.00 | 0.00 | 43.62 | 3.20 |
84 | 85 | 1.206849 | TGGTGATGCATAGCAACGAGA | 59.793 | 47.619 | 0.00 | 0.00 | 43.62 | 4.04 |
85 | 86 | 1.655484 | TGGTGATGCATAGCAACGAG | 58.345 | 50.000 | 0.00 | 0.00 | 43.62 | 4.18 |
86 | 87 | 1.941975 | CATGGTGATGCATAGCAACGA | 59.058 | 47.619 | 0.00 | 0.00 | 43.62 | 3.85 |
87 | 88 | 1.941975 | TCATGGTGATGCATAGCAACG | 59.058 | 47.619 | 0.00 | 1.35 | 43.62 | 4.10 |
88 | 89 | 3.819337 | AGATCATGGTGATGCATAGCAAC | 59.181 | 43.478 | 0.00 | 0.00 | 43.62 | 4.17 |
89 | 90 | 4.094830 | AGATCATGGTGATGCATAGCAA | 57.905 | 40.909 | 0.00 | 0.00 | 43.62 | 3.91 |
90 | 91 | 3.782656 | AGATCATGGTGATGCATAGCA | 57.217 | 42.857 | 0.00 | 4.86 | 44.86 | 3.49 |
91 | 92 | 3.366070 | GCAAGATCATGGTGATGCATAGC | 60.366 | 47.826 | 0.00 | 0.00 | 37.20 | 2.97 |
92 | 93 | 3.120304 | CGCAAGATCATGGTGATGCATAG | 60.120 | 47.826 | 0.00 | 0.00 | 37.20 | 2.23 |
93 | 94 | 2.809696 | CGCAAGATCATGGTGATGCATA | 59.190 | 45.455 | 0.00 | 0.00 | 37.20 | 3.14 |
94 | 95 | 1.607148 | CGCAAGATCATGGTGATGCAT | 59.393 | 47.619 | 0.00 | 0.00 | 37.20 | 3.96 |
95 | 96 | 1.018910 | CGCAAGATCATGGTGATGCA | 58.981 | 50.000 | 11.83 | 0.00 | 37.20 | 3.96 |
96 | 97 | 1.019673 | ACGCAAGATCATGGTGATGC | 58.980 | 50.000 | 0.00 | 3.06 | 37.20 | 3.91 |
97 | 98 | 2.011947 | ACACGCAAGATCATGGTGATG | 58.988 | 47.619 | 19.56 | 8.58 | 37.20 | 3.07 |
98 | 99 | 2.011947 | CACACGCAAGATCATGGTGAT | 58.988 | 47.619 | 19.56 | 0.00 | 40.34 | 3.06 |
99 | 100 | 1.441738 | CACACGCAAGATCATGGTGA | 58.558 | 50.000 | 19.56 | 0.00 | 43.62 | 4.02 |
100 | 101 | 0.179181 | GCACACGCAAGATCATGGTG | 60.179 | 55.000 | 14.17 | 14.17 | 43.62 | 4.17 |
101 | 102 | 1.638388 | CGCACACGCAAGATCATGGT | 61.638 | 55.000 | 0.00 | 0.00 | 43.62 | 3.55 |
102 | 103 | 1.061411 | CGCACACGCAAGATCATGG | 59.939 | 57.895 | 0.00 | 0.00 | 43.62 | 3.66 |
103 | 104 | 0.998669 | TACGCACACGCAAGATCATG | 59.001 | 50.000 | 0.00 | 0.00 | 45.53 | 3.07 |
104 | 105 | 1.280982 | CTACGCACACGCAAGATCAT | 58.719 | 50.000 | 0.00 | 0.00 | 45.53 | 2.45 |
105 | 106 | 0.735978 | CCTACGCACACGCAAGATCA | 60.736 | 55.000 | 0.00 | 0.00 | 45.53 | 2.92 |
106 | 107 | 0.457853 | TCCTACGCACACGCAAGATC | 60.458 | 55.000 | 0.00 | 0.00 | 45.53 | 2.75 |
107 | 108 | 0.037697 | TTCCTACGCACACGCAAGAT | 60.038 | 50.000 | 0.00 | 0.00 | 45.53 | 2.40 |
108 | 109 | 0.249531 | TTTCCTACGCACACGCAAGA | 60.250 | 50.000 | 0.00 | 0.00 | 45.53 | 3.02 |
109 | 110 | 0.796312 | ATTTCCTACGCACACGCAAG | 59.204 | 50.000 | 0.00 | 0.00 | 45.53 | 4.01 |
110 | 111 | 1.231221 | AATTTCCTACGCACACGCAA | 58.769 | 45.000 | 0.00 | 0.00 | 45.53 | 4.85 |
111 | 112 | 1.231221 | AAATTTCCTACGCACACGCA | 58.769 | 45.000 | 0.00 | 0.00 | 45.53 | 5.24 |
112 | 113 | 2.325509 | AAAATTTCCTACGCACACGC | 57.674 | 45.000 | 0.00 | 0.00 | 45.53 | 5.34 |
114 | 115 | 6.763303 | ATTTCAAAAATTTCCTACGCACAC | 57.237 | 33.333 | 0.00 | 0.00 | 0.00 | 3.82 |
115 | 116 | 8.138712 | AGTAATTTCAAAAATTTCCTACGCACA | 58.861 | 29.630 | 3.24 | 0.00 | 0.00 | 4.57 |
116 | 117 | 8.515473 | AGTAATTTCAAAAATTTCCTACGCAC | 57.485 | 30.769 | 3.24 | 0.00 | 0.00 | 5.34 |
117 | 118 | 9.615295 | GTAGTAATTTCAAAAATTTCCTACGCA | 57.385 | 29.630 | 3.24 | 0.00 | 0.00 | 5.24 |
118 | 119 | 8.782327 | CGTAGTAATTTCAAAAATTTCCTACGC | 58.218 | 33.333 | 24.45 | 10.35 | 38.26 | 4.42 |
119 | 120 | 9.815936 | ACGTAGTAATTTCAAAAATTTCCTACG | 57.184 | 29.630 | 28.37 | 28.37 | 41.94 | 3.51 |
122 | 123 | 9.687210 | GGAACGTAGTAATTTCAAAAATTTCCT | 57.313 | 29.630 | 3.24 | 3.62 | 45.00 | 3.36 |
123 | 124 | 9.687210 | AGGAACGTAGTAATTTCAAAAATTTCC | 57.313 | 29.630 | 3.24 | 3.29 | 45.00 | 3.13 |
127 | 128 | 9.673454 | GTTGAGGAACGTAGTAATTTCAAAAAT | 57.327 | 29.630 | 0.00 | 0.00 | 45.00 | 1.82 |
128 | 129 | 8.675504 | TGTTGAGGAACGTAGTAATTTCAAAAA | 58.324 | 29.630 | 0.00 | 0.00 | 45.00 | 1.94 |
129 | 130 | 8.124199 | GTGTTGAGGAACGTAGTAATTTCAAAA | 58.876 | 33.333 | 0.00 | 0.00 | 45.00 | 2.44 |
130 | 131 | 7.496591 | AGTGTTGAGGAACGTAGTAATTTCAAA | 59.503 | 33.333 | 0.00 | 0.00 | 45.00 | 2.69 |
131 | 132 | 6.987992 | AGTGTTGAGGAACGTAGTAATTTCAA | 59.012 | 34.615 | 0.00 | 0.00 | 45.00 | 2.69 |
132 | 133 | 6.518493 | AGTGTTGAGGAACGTAGTAATTTCA | 58.482 | 36.000 | 0.00 | 0.00 | 45.00 | 2.69 |
133 | 134 | 7.417496 | AAGTGTTGAGGAACGTAGTAATTTC | 57.583 | 36.000 | 0.00 | 0.00 | 45.00 | 2.17 |
134 | 135 | 7.041576 | GGAAAGTGTTGAGGAACGTAGTAATTT | 60.042 | 37.037 | 0.00 | 0.00 | 45.00 | 1.82 |
135 | 136 | 6.426025 | GGAAAGTGTTGAGGAACGTAGTAATT | 59.574 | 38.462 | 0.00 | 0.00 | 45.00 | 1.40 |
136 | 137 | 5.930569 | GGAAAGTGTTGAGGAACGTAGTAAT | 59.069 | 40.000 | 0.00 | 0.00 | 45.00 | 1.89 |
137 | 138 | 5.069516 | AGGAAAGTGTTGAGGAACGTAGTAA | 59.930 | 40.000 | 0.00 | 0.00 | 45.00 | 2.24 |
138 | 139 | 4.586001 | AGGAAAGTGTTGAGGAACGTAGTA | 59.414 | 41.667 | 0.00 | 0.00 | 45.00 | 1.82 |
140 | 141 | 3.991367 | AGGAAAGTGTTGAGGAACGTAG | 58.009 | 45.455 | 0.00 | 0.00 | 34.49 | 3.51 |
141 | 142 | 4.374399 | GAAGGAAAGTGTTGAGGAACGTA | 58.626 | 43.478 | 0.00 | 0.00 | 34.49 | 3.57 |
142 | 143 | 3.203716 | GAAGGAAAGTGTTGAGGAACGT | 58.796 | 45.455 | 0.00 | 0.00 | 34.49 | 3.99 |
143 | 144 | 2.548480 | GGAAGGAAAGTGTTGAGGAACG | 59.452 | 50.000 | 0.00 | 0.00 | 34.49 | 3.95 |
144 | 145 | 3.551846 | TGGAAGGAAAGTGTTGAGGAAC | 58.448 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
145 | 146 | 3.943671 | TGGAAGGAAAGTGTTGAGGAA | 57.056 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
146 | 147 | 3.652869 | AGATGGAAGGAAAGTGTTGAGGA | 59.347 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
147 | 148 | 4.026356 | AGATGGAAGGAAAGTGTTGAGG | 57.974 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
148 | 149 | 5.767168 | AGAAAGATGGAAGGAAAGTGTTGAG | 59.233 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
149 | 150 | 5.694995 | AGAAAGATGGAAGGAAAGTGTTGA | 58.305 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
150 | 151 | 7.510549 | TTAGAAAGATGGAAGGAAAGTGTTG | 57.489 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
151 | 152 | 8.712228 | AATTAGAAAGATGGAAGGAAAGTGTT | 57.288 | 30.769 | 0.00 | 0.00 | 0.00 | 3.32 |
152 | 153 | 8.712228 | AAATTAGAAAGATGGAAGGAAAGTGT | 57.288 | 30.769 | 0.00 | 0.00 | 0.00 | 3.55 |
153 | 154 | 9.631452 | GAAAATTAGAAAGATGGAAGGAAAGTG | 57.369 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
154 | 155 | 9.593565 | AGAAAATTAGAAAGATGGAAGGAAAGT | 57.406 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
209 | 211 | 7.649306 | ACCTCGAAAAATGTTCAAGAATTTGAG | 59.351 | 33.333 | 0.00 | 0.00 | 43.76 | 3.02 |
218 | 220 | 6.319152 | TGTTAAGGACCTCGAAAAATGTTCAA | 59.681 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
230 | 232 | 8.726988 | TGATTTTAAGAAATGTTAAGGACCTCG | 58.273 | 33.333 | 0.00 | 0.00 | 35.65 | 4.63 |
270 | 272 | 8.040132 | TGATTTTCCAAAAAGTGTTCATGAAGT | 58.960 | 29.630 | 8.80 | 0.00 | 0.00 | 3.01 |
275 | 277 | 8.829612 | GTTCATGATTTTCCAAAAAGTGTTCAT | 58.170 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
279 | 281 | 8.735692 | ATTGTTCATGATTTTCCAAAAAGTGT | 57.264 | 26.923 | 0.00 | 0.00 | 0.00 | 3.55 |
335 | 340 | 6.258947 | TGTTCACGAGTGTCATAAAATGTTCA | 59.741 | 34.615 | 2.97 | 0.00 | 0.00 | 3.18 |
345 | 350 | 2.724977 | ACGATGTTCACGAGTGTCAT | 57.275 | 45.000 | 12.93 | 12.93 | 34.70 | 3.06 |
352 | 357 | 4.035792 | ACCAATTCAAAACGATGTTCACGA | 59.964 | 37.500 | 0.00 | 0.00 | 34.70 | 4.35 |
362 | 367 | 7.003072 | CGATCAAAATTCACCAATTCAAAACG | 58.997 | 34.615 | 0.00 | 0.00 | 30.37 | 3.60 |
429 | 437 | 9.107177 | ACTGCAATGATTCAAAAATTGTTTGTA | 57.893 | 25.926 | 0.00 | 0.00 | 34.48 | 2.41 |
431 | 439 | 8.844441 | AACTGCAATGATTCAAAAATTGTTTG | 57.156 | 26.923 | 0.00 | 0.00 | 34.48 | 2.93 |
432 | 440 | 9.857957 | AAAACTGCAATGATTCAAAAATTGTTT | 57.142 | 22.222 | 0.00 | 0.00 | 34.48 | 2.83 |
493 | 501 | 9.741647 | AAAAGTTCAAAACAAATTCAAAAAGCA | 57.258 | 22.222 | 0.00 | 0.00 | 0.00 | 3.91 |
563 | 571 | 8.665643 | ACATGATTTTGAACAAATGTTGTCAT | 57.334 | 26.923 | 3.05 | 3.51 | 44.59 | 3.06 |
564 | 572 | 9.029243 | GTACATGATTTTGAACAAATGTTGTCA | 57.971 | 29.630 | 3.05 | 0.00 | 44.59 | 3.58 |
565 | 573 | 9.029243 | TGTACATGATTTTGAACAAATGTTGTC | 57.971 | 29.630 | 3.05 | 0.00 | 44.59 | 3.18 |
762 | 772 | 5.975693 | TCGGGATTACAAAAATGCTCTTT | 57.024 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
764 | 774 | 6.530019 | AATTCGGGATTACAAAAATGCTCT | 57.470 | 33.333 | 0.00 | 0.00 | 0.00 | 4.09 |
896 | 909 | 3.005539 | AGGTCCCTCTGCACGCAT | 61.006 | 61.111 | 0.00 | 0.00 | 0.00 | 4.73 |
1067 | 1087 | 3.500642 | CGGAGTCGCTCAGCTCGA | 61.501 | 66.667 | 0.00 | 0.00 | 32.83 | 4.04 |
1311 | 1331 | 0.541998 | TCCTCTTGGAGTTGGAGCGA | 60.542 | 55.000 | 0.00 | 0.00 | 37.46 | 4.93 |
1400 | 1420 | 2.146342 | CAGTTCTGAACCAGCACGAAT | 58.854 | 47.619 | 16.48 | 0.00 | 33.19 | 3.34 |
1438 | 1458 | 5.046520 | GGTTCTACCACTAAATCCTCACTGT | 60.047 | 44.000 | 0.00 | 0.00 | 38.42 | 3.55 |
1482 | 1502 | 2.004583 | TAATACGCTGACTGTGCCAC | 57.995 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1523 | 1556 | 6.425114 | CACTAAGAAAGTTGACACTACAGCAT | 59.575 | 38.462 | 0.00 | 0.00 | 35.76 | 3.79 |
1560 | 1601 | 2.489329 | CCCCTATAGCAATGCAATTCCG | 59.511 | 50.000 | 8.35 | 0.00 | 31.22 | 4.30 |
1581 | 1622 | 5.102313 | GCAATTGAAACACTAACCCTATGC | 58.898 | 41.667 | 10.34 | 0.00 | 0.00 | 3.14 |
1585 | 1626 | 3.004315 | CACGCAATTGAAACACTAACCCT | 59.996 | 43.478 | 10.34 | 0.00 | 0.00 | 4.34 |
1625 | 1672 | 0.832135 | TCGACCAACTCCAGGCTCTT | 60.832 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1633 | 1680 | 4.271291 | GCTAGAATCAAATCGACCAACTCC | 59.729 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
1782 | 1840 | 2.474410 | ACACCAGTTCTCCCGATTTC | 57.526 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1791 | 1849 | 4.522789 | ACAACAGAAAACAACACCAGTTCT | 59.477 | 37.500 | 0.00 | 0.00 | 35.28 | 3.01 |
1842 | 1908 | 8.432013 | TCTTGGCTTCATGATACTTGTGTATAT | 58.568 | 33.333 | 0.00 | 0.00 | 39.29 | 0.86 |
1914 | 1980 | 8.498054 | ACATCTGTCTTCATTTGTATAACTGG | 57.502 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
1978 | 2044 | 6.430000 | ACCCTCATTGTGTACATCAAACTAAC | 59.570 | 38.462 | 12.68 | 0.00 | 0.00 | 2.34 |
2066 | 2132 | 5.876612 | TGCCAAATTGCCAATTCAATTAC | 57.123 | 34.783 | 2.61 | 1.54 | 43.56 | 1.89 |
2081 | 2147 | 3.183801 | ACCTGGGAAATGAATGCCAAAT | 58.816 | 40.909 | 0.00 | 0.00 | 40.58 | 2.32 |
2082 | 2148 | 2.618794 | ACCTGGGAAATGAATGCCAAA | 58.381 | 42.857 | 0.00 | 0.00 | 40.58 | 3.28 |
2083 | 2149 | 2.302445 | CAACCTGGGAAATGAATGCCAA | 59.698 | 45.455 | 0.00 | 0.00 | 40.58 | 4.52 |
2084 | 2150 | 1.901159 | CAACCTGGGAAATGAATGCCA | 59.099 | 47.619 | 0.00 | 0.00 | 38.63 | 4.92 |
2085 | 2151 | 1.405933 | GCAACCTGGGAAATGAATGCC | 60.406 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2086 | 2152 | 1.275856 | TGCAACCTGGGAAATGAATGC | 59.724 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
2087 | 2153 | 3.258872 | TCTTGCAACCTGGGAAATGAATG | 59.741 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
2088 | 2154 | 3.509442 | TCTTGCAACCTGGGAAATGAAT | 58.491 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2089 | 2155 | 2.956132 | TCTTGCAACCTGGGAAATGAA | 58.044 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2090 | 2156 | 2.673775 | TCTTGCAACCTGGGAAATGA | 57.326 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2091 | 2157 | 4.142093 | CCTTATCTTGCAACCTGGGAAATG | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 2.32 |
2092 | 2158 | 4.026052 | CCTTATCTTGCAACCTGGGAAAT | 58.974 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
2093 | 2159 | 3.430453 | CCTTATCTTGCAACCTGGGAAA | 58.570 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
2100 | 2166 | 2.024176 | TCTCGCCTTATCTTGCAACC | 57.976 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2103 | 2170 | 5.368145 | ACATATTTCTCGCCTTATCTTGCA | 58.632 | 37.500 | 0.00 | 0.00 | 0.00 | 4.08 |
2104 | 2171 | 5.931441 | ACATATTTCTCGCCTTATCTTGC | 57.069 | 39.130 | 0.00 | 0.00 | 0.00 | 4.01 |
2167 | 2235 | 7.494625 | CCTTCTAAGTCTTCTAACAAACACACA | 59.505 | 37.037 | 0.00 | 0.00 | 0.00 | 3.72 |
2242 | 2348 | 2.629617 | CAGAGGATGGCAGGTTTTTGTT | 59.370 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
2352 | 2458 | 5.620738 | TCTGCTTTACTAGGCATCTCATT | 57.379 | 39.130 | 0.00 | 0.00 | 37.83 | 2.57 |
2511 | 2617 | 1.511318 | CGTTCACGGATGGCAACCAA | 61.511 | 55.000 | 14.59 | 0.00 | 34.42 | 3.67 |
2561 | 2667 | 0.995024 | ATCCAACAGAACCTGGAGGG | 59.005 | 55.000 | 0.00 | 0.00 | 44.82 | 4.30 |
2620 | 2726 | 4.335315 | TCCGCAGATAAGTAATTTTGCAGG | 59.665 | 41.667 | 7.27 | 8.35 | 31.46 | 4.85 |
2622 | 2728 | 5.888691 | TTCCGCAGATAAGTAATTTTGCA | 57.111 | 34.783 | 7.27 | 0.00 | 31.46 | 4.08 |
2666 | 2779 | 9.526713 | AATATCTGCTTTACTATCTATCGCATG | 57.473 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
2881 | 2996 | 0.110486 | TTCAACAGAACCTGGAGGGC | 59.890 | 55.000 | 0.00 | 0.00 | 40.27 | 5.19 |
2968 | 3083 | 2.791383 | TTCATGAAACAAAGTGGCCG | 57.209 | 45.000 | 5.45 | 0.00 | 0.00 | 6.13 |
3112 | 3227 | 4.460382 | CACTGGAGGCACATTCTACAAATT | 59.540 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
3148 | 3264 | 1.745087 | CCTTGCGCATGTGAATAGGTT | 59.255 | 47.619 | 12.75 | 0.00 | 0.00 | 3.50 |
3241 | 3357 | 5.468409 | CCTCTTCACTTTCTCCTTGTCTTTC | 59.532 | 44.000 | 0.00 | 0.00 | 0.00 | 2.62 |
3292 | 3408 | 3.529533 | CATCTCAGTTTCGCTCTTCCAT | 58.470 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
3365 | 3481 | 6.698380 | ACCTAGTGTACAGTTTACAGATTGG | 58.302 | 40.000 | 8.85 | 1.31 | 0.00 | 3.16 |
3368 | 3484 | 8.874744 | TTCTACCTAGTGTACAGTTTACAGAT | 57.125 | 34.615 | 8.85 | 0.00 | 0.00 | 2.90 |
3395 | 3511 | 3.677424 | GCTTACTCAGGCGAAGAGATTGT | 60.677 | 47.826 | 10.78 | 0.00 | 36.91 | 2.71 |
3405 | 3521 | 1.639298 | GGTGCAAGCTTACTCAGGCG | 61.639 | 60.000 | 0.00 | 0.00 | 0.00 | 5.52 |
3433 | 3549 | 4.401202 | AGAAACAAATCTTGAACCAACCGT | 59.599 | 37.500 | 0.00 | 0.00 | 0.00 | 4.83 |
3444 | 3560 | 8.947055 | AACTGCAAATACAAGAAACAAATCTT | 57.053 | 26.923 | 0.00 | 0.00 | 40.23 | 2.40 |
3446 | 3562 | 8.579682 | AGAACTGCAAATACAAGAAACAAATC | 57.420 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
3447 | 3563 | 8.416329 | AGAGAACTGCAAATACAAGAAACAAAT | 58.584 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
3476 | 3593 | 2.969628 | ATCAGACCAATCCGAGTGTC | 57.030 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3489 | 3606 | 6.462073 | TTTAACGAACACAGCTTATCAGAC | 57.538 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
3490 | 3607 | 7.172532 | ACATTTTAACGAACACAGCTTATCAGA | 59.827 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
3491 | 3608 | 7.298122 | ACATTTTAACGAACACAGCTTATCAG | 58.702 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
3493 | 3610 | 8.502161 | AAACATTTTAACGAACACAGCTTATC | 57.498 | 30.769 | 0.00 | 0.00 | 0.00 | 1.75 |
3494 | 3611 | 7.593644 | GGAAACATTTTAACGAACACAGCTTAT | 59.406 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
3495 | 3612 | 6.913673 | GGAAACATTTTAACGAACACAGCTTA | 59.086 | 34.615 | 0.00 | 0.00 | 0.00 | 3.09 |
3523 | 3641 | 1.374947 | CAAAAGAGGCCCCGAGTCA | 59.625 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
3547 | 3688 | 3.454812 | GGGTAGATACAGGAAAAGCCTCA | 59.545 | 47.826 | 0.00 | 0.00 | 46.97 | 3.86 |
3550 | 3691 | 2.169978 | ACGGGTAGATACAGGAAAAGCC | 59.830 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3551 | 3692 | 3.538634 | ACGGGTAGATACAGGAAAAGC | 57.461 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
3552 | 3693 | 6.040878 | CAGTTACGGGTAGATACAGGAAAAG | 58.959 | 44.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3580 | 3721 | 2.126467 | CAAAATTTCACACAGGGCACG | 58.874 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
3584 | 3725 | 2.364970 | TCTGCCAAAATTTCACACAGGG | 59.635 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
3586 | 3727 | 5.178067 | GGAATTCTGCCAAAATTTCACACAG | 59.822 | 40.000 | 5.23 | 0.00 | 0.00 | 3.66 |
3599 | 3740 | 4.800249 | GCAAGTTTCATTGGAATTCTGCCA | 60.800 | 41.667 | 5.23 | 0.00 | 31.93 | 4.92 |
3604 | 3745 | 4.981674 | TGTTCGCAAGTTTCATTGGAATTC | 59.018 | 37.500 | 0.00 | 0.00 | 39.48 | 2.17 |
3613 | 3754 | 4.320202 | GGCTTCTATTGTTCGCAAGTTTCA | 60.320 | 41.667 | 0.00 | 0.00 | 40.85 | 2.69 |
3617 | 3758 | 2.084546 | GGGCTTCTATTGTTCGCAAGT | 58.915 | 47.619 | 0.00 | 0.00 | 40.85 | 3.16 |
3619 | 3760 | 2.083774 | CAGGGCTTCTATTGTTCGCAA | 58.916 | 47.619 | 0.00 | 0.00 | 41.87 | 4.85 |
3621 | 3762 | 2.024176 | TCAGGGCTTCTATTGTTCGC | 57.976 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
3627 | 3768 | 7.092399 | ACCAGTTTAGTATTCAGGGCTTCTATT | 60.092 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
3629 | 3770 | 5.724854 | ACCAGTTTAGTATTCAGGGCTTCTA | 59.275 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3646 | 3787 | 2.514205 | GCATGAAGCACAACCAGTTT | 57.486 | 45.000 | 0.00 | 0.00 | 44.79 | 2.66 |
3667 | 3808 | 9.182642 | TCTAAGATTTCCATGTCCCCTAATTAT | 57.817 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3693 | 3839 | 6.932753 | TCCAATGGGAATTTGGGACTATTAT | 58.067 | 36.000 | 0.00 | 0.00 | 43.19 | 1.28 |
3695 | 3841 | 5.219468 | TCCAATGGGAATTTGGGACTATT | 57.781 | 39.130 | 0.00 | 0.00 | 43.19 | 1.73 |
3710 | 3856 | 7.991084 | TCTATGATTAGCAAGAATCCAATGG | 57.009 | 36.000 | 0.00 | 0.00 | 35.34 | 3.16 |
3784 | 3930 | 6.506500 | ACATCTCCAGATTTGCTAAAACAG | 57.493 | 37.500 | 0.00 | 0.00 | 31.21 | 3.16 |
3812 | 3958 | 3.007614 | ACATTACTAGACCCACCACACAC | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
3813 | 3959 | 3.007506 | CACATTACTAGACCCACCACACA | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.72 |
3814 | 3960 | 3.596214 | CACATTACTAGACCCACCACAC | 58.404 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3815 | 3961 | 2.569853 | CCACATTACTAGACCCACCACA | 59.430 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3816 | 3962 | 2.679930 | GCCACATTACTAGACCCACCAC | 60.680 | 54.545 | 0.00 | 0.00 | 0.00 | 4.16 |
3817 | 3963 | 1.557832 | GCCACATTACTAGACCCACCA | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
3895 | 4045 | 4.552365 | ATCACCATCGCGGCAGGG | 62.552 | 66.667 | 6.13 | 0.43 | 39.03 | 4.45 |
4020 | 4211 | 3.371898 | GCATTGTGGAATTTTAAGCCAGC | 59.628 | 43.478 | 0.00 | 0.00 | 31.18 | 4.85 |
4028 | 5583 | 5.480642 | TGGTGTATGCATTGTGGAATTTT | 57.519 | 34.783 | 3.54 | 0.00 | 0.00 | 1.82 |
4042 | 5597 | 7.275920 | AGGTCTTAAGCTAAAGATGGTGTATG | 58.724 | 38.462 | 0.00 | 0.00 | 37.78 | 2.39 |
4046 | 5601 | 6.410540 | AGAAGGTCTTAAGCTAAAGATGGTG | 58.589 | 40.000 | 0.00 | 0.00 | 37.78 | 4.17 |
4048 | 5603 | 6.987404 | GGTAGAAGGTCTTAAGCTAAAGATGG | 59.013 | 42.308 | 0.00 | 0.00 | 37.78 | 3.51 |
4071 | 5678 | 5.296151 | AGATCCGATCACAAACATATGGT | 57.704 | 39.130 | 11.01 | 0.00 | 0.00 | 3.55 |
4076 | 5683 | 4.576463 | GCCTTAAGATCCGATCACAAACAT | 59.424 | 41.667 | 11.01 | 0.00 | 0.00 | 2.71 |
4077 | 5684 | 3.938963 | GCCTTAAGATCCGATCACAAACA | 59.061 | 43.478 | 11.01 | 0.00 | 0.00 | 2.83 |
4078 | 5685 | 4.192317 | AGCCTTAAGATCCGATCACAAAC | 58.808 | 43.478 | 11.01 | 0.54 | 0.00 | 2.93 |
4079 | 5686 | 4.487714 | AGCCTTAAGATCCGATCACAAA | 57.512 | 40.909 | 11.01 | 1.43 | 0.00 | 2.83 |
4130 | 5750 | 7.485913 | TCCTTACTGTTTTCATACGATACGAAC | 59.514 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
4131 | 5751 | 7.537715 | TCCTTACTGTTTTCATACGATACGAA | 58.462 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
4132 | 5752 | 7.066163 | TCTCCTTACTGTTTTCATACGATACGA | 59.934 | 37.037 | 0.00 | 0.00 | 0.00 | 3.43 |
4133 | 5753 | 7.191551 | TCTCCTTACTGTTTTCATACGATACG | 58.808 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
4136 | 5756 | 8.915036 | AGTATCTCCTTACTGTTTTCATACGAT | 58.085 | 33.333 | 0.00 | 0.00 | 31.25 | 3.73 |
4137 | 5757 | 8.289939 | AGTATCTCCTTACTGTTTTCATACGA | 57.710 | 34.615 | 0.00 | 0.00 | 31.25 | 3.43 |
4138 | 5758 | 8.808529 | CAAGTATCTCCTTACTGTTTTCATACG | 58.191 | 37.037 | 0.00 | 0.00 | 32.78 | 3.06 |
4139 | 5759 | 9.099454 | CCAAGTATCTCCTTACTGTTTTCATAC | 57.901 | 37.037 | 0.00 | 0.00 | 32.78 | 2.39 |
4140 | 5760 | 9.042450 | TCCAAGTATCTCCTTACTGTTTTCATA | 57.958 | 33.333 | 0.00 | 0.00 | 32.78 | 2.15 |
4141 | 5761 | 7.918076 | TCCAAGTATCTCCTTACTGTTTTCAT | 58.082 | 34.615 | 0.00 | 0.00 | 32.78 | 2.57 |
4145 | 5765 | 6.014840 | TCGTTCCAAGTATCTCCTTACTGTTT | 60.015 | 38.462 | 0.00 | 0.00 | 32.78 | 2.83 |
4153 | 5788 | 2.457598 | TGCTCGTTCCAAGTATCTCCT | 58.542 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
4155 | 5790 | 3.585862 | TGTTGCTCGTTCCAAGTATCTC | 58.414 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
4161 | 5796 | 1.205064 | CGCTGTTGCTCGTTCCAAG | 59.795 | 57.895 | 0.00 | 0.00 | 36.97 | 3.61 |
4215 | 5850 | 1.450134 | GCATCATGGCCGACAGACA | 60.450 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
4216 | 5851 | 2.528743 | CGCATCATGGCCGACAGAC | 61.529 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
4257 | 5892 | 0.033504 | TTGTCCCTGCTCGTCTGAAC | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4287 | 5922 | 5.043189 | CGATCCGGAAAGCTTTAAAAAGT | 57.957 | 39.130 | 12.68 | 0.00 | 38.28 | 2.66 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.