Multiple sequence alignment - TraesCS6B01G330000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G330000 chr6B 100.000 4330 0 0 1 4330 579409025 579404696 0.000000e+00 7997
1 TraesCS6B01G330000 chr6B 82.609 552 77 15 3636 4182 591255822 591256359 1.820000e-128 470
2 TraesCS6B01G330000 chr6A 85.256 1153 94 36 2376 3513 533280159 533279068 0.000000e+00 1118
3 TraesCS6B01G330000 chr6A 88.296 487 43 6 1539 2021 533280989 533280513 4.860000e-159 571
4 TraesCS6B01G330000 chr6A 82.278 711 57 36 12 684 533282404 533281725 6.330000e-153 551
5 TraesCS6B01G330000 chr6A 86.942 291 24 6 2147 2435 533280428 533280150 9.040000e-82 315
6 TraesCS6B01G330000 chr6A 82.524 309 26 17 1192 1485 533281285 533280990 3.340000e-61 246
7 TraesCS6B01G330000 chr6D 84.682 803 58 31 1190 1974 388097439 388098194 0.000000e+00 741
8 TraesCS6B01G330000 chr6D 86.167 694 47 18 2133 2818 388098362 388099014 0.000000e+00 704
9 TraesCS6B01G330000 chr6D 88.362 464 28 7 2885 3344 388099041 388099482 6.370000e-148 534
10 TraesCS6B01G330000 chr6D 85.028 541 31 20 29 553 388096359 388096865 5.000000e-139 505
11 TraesCS6B01G330000 chr1D 80.432 695 103 19 3663 4330 472337275 472336587 2.330000e-137 499
12 TraesCS6B01G330000 chr1D 77.336 578 116 13 3562 4130 118473972 118474543 1.160000e-85 327
13 TraesCS6B01G330000 chr3D 80.970 536 93 6 3651 4182 496174070 496174600 2.410000e-112 416
14 TraesCS6B01G330000 chr7B 80.651 553 91 12 3636 4182 614218719 614218177 8.660000e-112 414
15 TraesCS6B01G330000 chr7B 79.026 534 106 6 3653 4182 428481393 428480862 1.140000e-95 361
16 TraesCS6B01G330000 chr4D 79.492 551 92 14 3636 4179 49802658 49802122 5.290000e-99 372
17 TraesCS6B01G330000 chr5D 84.615 364 53 3 3638 3999 427543794 427543432 4.120000e-95 359
18 TraesCS6B01G330000 chr2A 78.736 522 90 11 3663 4176 655329353 655329861 3.230000e-86 329


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G330000 chr6B 579404696 579409025 4329 True 7997.0 7997 100.00000 1 4330 1 chr6B.!!$R1 4329
1 TraesCS6B01G330000 chr6B 591255822 591256359 537 False 470.0 470 82.60900 3636 4182 1 chr6B.!!$F1 546
2 TraesCS6B01G330000 chr6A 533279068 533282404 3336 True 560.2 1118 85.05920 12 3513 5 chr6A.!!$R1 3501
3 TraesCS6B01G330000 chr6D 388096359 388099482 3123 False 621.0 741 86.05975 29 3344 4 chr6D.!!$F1 3315
4 TraesCS6B01G330000 chr1D 472336587 472337275 688 True 499.0 499 80.43200 3663 4330 1 chr1D.!!$R1 667
5 TraesCS6B01G330000 chr1D 118473972 118474543 571 False 327.0 327 77.33600 3562 4130 1 chr1D.!!$F1 568
6 TraesCS6B01G330000 chr3D 496174070 496174600 530 False 416.0 416 80.97000 3651 4182 1 chr3D.!!$F1 531
7 TraesCS6B01G330000 chr7B 614218177 614218719 542 True 414.0 414 80.65100 3636 4182 1 chr7B.!!$R2 546
8 TraesCS6B01G330000 chr7B 428480862 428481393 531 True 361.0 361 79.02600 3653 4182 1 chr7B.!!$R1 529
9 TraesCS6B01G330000 chr4D 49802122 49802658 536 True 372.0 372 79.49200 3636 4179 1 chr4D.!!$R1 543
10 TraesCS6B01G330000 chr2A 655329353 655329861 508 False 329.0 329 78.73600 3663 4176 1 chr2A.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 862 0.108329 CCACAGGGTACTAGCGTTGG 60.108 60.0 0.0 0.0 0.00 3.77 F
1520 1669 0.041535 ATGATGGGCTGGCTTTTCCA 59.958 50.0 0.0 0.0 44.18 3.53 F
2041 2195 0.179073 AGCGCGACTAATCCTGCATT 60.179 50.0 12.1 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2176 0.179073 AATGCAGGATTAGTCGCGCT 60.179 50.0 5.56 4.52 0.00 5.92 R
2671 2950 0.329596 CTCCCAAACTCCTCCCCTTG 59.670 60.0 0.00 0.00 0.00 3.61 R
3559 3864 0.034896 AACGTCTGGGCTCGTTTGAT 59.965 50.0 0.00 0.00 45.78 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.778415 AGCTGCTGGTACGTCGCG 62.778 66.667 0.00 0.00 0.00 5.87
55 56 1.508545 CGAGTCATGTCACCTCGCT 59.491 57.895 11.60 0.00 41.21 4.93
60 61 1.807165 CATGTCACCTCGCTCCACG 60.807 63.158 0.00 0.00 45.62 4.94
75 76 1.018752 CCACGACGCCATTGTCATGA 61.019 55.000 0.00 0.00 34.13 3.07
76 77 0.371301 CACGACGCCATTGTCATGAG 59.629 55.000 0.00 0.00 34.13 2.90
102 103 0.457035 ACAACACAAGCAAGCACAGG 59.543 50.000 0.00 0.00 0.00 4.00
112 123 0.526096 CAAGCACAGGCACACAACAC 60.526 55.000 0.00 0.00 44.61 3.32
211 239 1.887707 GAACTTAGCATCCCGGGCG 60.888 63.158 18.49 10.96 36.08 6.13
243 271 4.151582 CGTCCCGCAATACCCGGT 62.152 66.667 0.00 0.00 44.13 5.28
337 373 2.966732 TTGTCAGGCCACCCGATCC 61.967 63.158 5.01 0.00 35.76 3.36
338 374 4.176752 GTCAGGCCACCCGATCCC 62.177 72.222 5.01 0.00 35.76 3.85
341 377 4.880426 AGGCCACCCGATCCCGAT 62.880 66.667 5.01 0.00 38.22 4.18
342 378 4.315941 GGCCACCCGATCCCGATC 62.316 72.222 0.00 0.00 38.22 3.69
343 379 3.546543 GCCACCCGATCCCGATCA 61.547 66.667 5.59 0.00 37.69 2.92
344 380 2.421739 CCACCCGATCCCGATCAC 59.578 66.667 5.59 0.00 37.69 3.06
553 604 0.251386 TTTCCGGCATTGGTTAGGCA 60.251 50.000 0.00 0.00 0.00 4.75
576 627 2.838286 GATGGATCGATGGAGCTGC 58.162 57.895 0.54 0.00 0.00 5.25
577 628 0.673022 GATGGATCGATGGAGCTGCC 60.673 60.000 0.54 0.00 37.10 4.85
579 630 2.730733 GATCGATGGAGCTGCCGA 59.269 61.111 0.54 8.83 40.66 5.54
580 631 1.291588 GATCGATGGAGCTGCCGAT 59.708 57.895 16.80 16.80 43.38 4.18
581 632 1.005275 ATCGATGGAGCTGCCGATG 60.005 57.895 16.25 0.00 39.84 3.84
582 633 2.446142 ATCGATGGAGCTGCCGATGG 62.446 60.000 16.25 0.57 39.84 3.51
631 682 2.033065 GCGTCGACGTACTCATACTCAT 60.033 50.000 35.48 0.00 42.22 2.90
693 744 3.066198 GGGACGGGTAAGCACAGT 58.934 61.111 0.00 0.00 0.00 3.55
697 748 0.242017 GACGGGTAAGCACAGTACGT 59.758 55.000 0.00 0.00 35.64 3.57
698 749 1.468520 GACGGGTAAGCACAGTACGTA 59.531 52.381 0.00 0.00 32.84 3.57
699 750 1.470098 ACGGGTAAGCACAGTACGTAG 59.530 52.381 0.00 0.00 0.00 3.51
700 751 1.796617 CGGGTAAGCACAGTACGTAGC 60.797 57.143 0.00 0.00 0.00 3.58
701 752 1.475682 GGGTAAGCACAGTACGTAGCT 59.524 52.381 0.00 0.00 34.67 3.32
702 753 2.479219 GGGTAAGCACAGTACGTAGCTC 60.479 54.545 7.43 0.00 32.87 4.09
726 826 2.359230 GCGTCCTGGCAAGAGCTT 60.359 61.111 0.00 0.00 41.70 3.74
727 827 2.394563 GCGTCCTGGCAAGAGCTTC 61.395 63.158 0.00 0.00 41.70 3.86
729 829 1.743252 GTCCTGGCAAGAGCTTCGG 60.743 63.158 0.00 0.00 41.70 4.30
748 848 1.821936 CTGGGCTAGCTCTCCACAG 59.178 63.158 17.26 10.25 0.00 3.66
749 849 1.684386 CTGGGCTAGCTCTCCACAGG 61.684 65.000 17.26 0.00 0.00 4.00
751 851 1.687493 GGCTAGCTCTCCACAGGGT 60.687 63.158 15.72 0.00 34.93 4.34
753 853 0.747852 GCTAGCTCTCCACAGGGTAC 59.252 60.000 7.70 0.00 34.93 3.34
754 854 1.686741 GCTAGCTCTCCACAGGGTACT 60.687 57.143 7.70 0.00 34.93 2.73
760 860 1.183549 CTCCACAGGGTACTAGCGTT 58.816 55.000 0.00 0.00 34.93 4.84
762 862 0.108329 CCACAGGGTACTAGCGTTGG 60.108 60.000 0.00 0.00 0.00 3.77
763 863 0.108329 CACAGGGTACTAGCGTTGGG 60.108 60.000 0.00 0.00 0.00 4.12
764 864 1.153429 CAGGGTACTAGCGTTGGGC 60.153 63.158 0.00 0.00 44.05 5.36
803 921 3.131933 AGCGGCATGATATAAGCTAGGAG 59.868 47.826 1.45 0.00 32.73 3.69
845 969 1.069668 CCCGCTTTACCTAATAGCCGT 59.930 52.381 0.00 0.00 0.00 5.68
852 976 5.657474 CTTTACCTAATAGCCGTCAACAGA 58.343 41.667 0.00 0.00 0.00 3.41
857 981 4.209288 CCTAATAGCCGTCAACAGAATTCG 59.791 45.833 0.00 0.00 0.00 3.34
894 1019 1.441016 CTTCTGCCAAACGCGCTTC 60.441 57.895 5.73 0.00 42.08 3.86
917 1049 4.560856 CTCGGCTCGCTTCTCCGG 62.561 72.222 0.00 0.00 43.10 5.14
923 1055 4.735132 TCGCTTCTCCGGCCGTTG 62.735 66.667 26.12 16.29 0.00 4.10
972 1104 2.554775 CTCTGCTTGCTGTGTGCG 59.445 61.111 0.00 0.00 46.63 5.34
1001 1133 2.278596 CGTGCGGTTCGGATCGAT 60.279 61.111 0.00 0.00 35.23 3.59
1007 1139 0.597377 CGGTTCGGATCGATGATGCA 60.597 55.000 0.54 0.00 35.23 3.96
1070 1202 1.599542 GGTACGTACGTATCGGCTTCT 59.400 52.381 29.05 2.13 32.82 2.85
1074 1206 2.919229 ACGTACGTATCGGCTTCTTTTG 59.081 45.455 21.41 0.00 0.00 2.44
1078 1210 4.124851 ACGTATCGGCTTCTTTTGATCT 57.875 40.909 0.00 0.00 0.00 2.75
1079 1211 3.865745 ACGTATCGGCTTCTTTTGATCTG 59.134 43.478 0.00 0.00 0.00 2.90
1083 1215 2.485426 TCGGCTTCTTTTGATCTGCTTG 59.515 45.455 0.00 0.00 0.00 4.01
1084 1216 2.227388 CGGCTTCTTTTGATCTGCTTGT 59.773 45.455 0.00 0.00 0.00 3.16
1085 1217 3.572584 GGCTTCTTTTGATCTGCTTGTG 58.427 45.455 0.00 0.00 0.00 3.33
1104 1236 5.165961 TGTGGTCTCTAGCTTAATTTGCT 57.834 39.130 9.92 9.92 43.79 3.91
1105 1237 4.937620 TGTGGTCTCTAGCTTAATTTGCTG 59.062 41.667 13.66 6.24 41.32 4.41
1106 1238 3.941483 TGGTCTCTAGCTTAATTTGCTGC 59.059 43.478 13.66 0.00 41.32 5.25
1108 1240 3.941483 GTCTCTAGCTTAATTTGCTGCCA 59.059 43.478 13.66 0.00 41.32 4.92
1110 1242 2.677836 TCTAGCTTAATTTGCTGCCACG 59.322 45.455 13.66 0.00 41.32 4.94
1111 1243 0.527565 AGCTTAATTTGCTGCCACGG 59.472 50.000 0.00 0.00 39.56 4.94
1113 1245 0.798009 CTTAATTTGCTGCCACGGCG 60.798 55.000 4.80 4.80 45.51 6.46
1124 1256 1.079127 CCACGGCGGTCATCTTCTT 60.079 57.895 13.24 0.00 0.00 2.52
1125 1257 1.361668 CCACGGCGGTCATCTTCTTG 61.362 60.000 13.24 0.00 0.00 3.02
1126 1258 1.741770 ACGGCGGTCATCTTCTTGC 60.742 57.895 13.24 0.00 0.00 4.01
1129 1261 1.576356 GGCGGTCATCTTCTTGCTAG 58.424 55.000 0.00 0.00 0.00 3.42
1130 1262 0.933796 GCGGTCATCTTCTTGCTAGC 59.066 55.000 8.10 8.10 0.00 3.42
1131 1263 1.472376 GCGGTCATCTTCTTGCTAGCT 60.472 52.381 17.23 0.00 0.00 3.32
1132 1264 2.200067 CGGTCATCTTCTTGCTAGCTG 58.800 52.381 17.23 9.05 0.00 4.24
1133 1265 1.939255 GGTCATCTTCTTGCTAGCTGC 59.061 52.381 17.23 0.00 43.25 5.25
1149 1281 4.687464 GCATGCCTGCTGCTTTTT 57.313 50.000 6.36 0.00 45.32 1.94
1165 1297 2.798976 TTTTTGTGACATGCTGCTCC 57.201 45.000 0.00 0.00 0.00 4.70
1166 1298 1.689984 TTTTGTGACATGCTGCTCCA 58.310 45.000 0.00 0.00 0.00 3.86
1167 1299 1.241165 TTTGTGACATGCTGCTCCAG 58.759 50.000 0.00 0.00 34.12 3.86
1168 1300 0.607217 TTGTGACATGCTGCTCCAGG 60.607 55.000 0.00 0.00 31.21 4.45
1169 1301 1.002868 GTGACATGCTGCTCCAGGT 60.003 57.895 0.00 0.00 31.67 4.00
1170 1302 1.023513 GTGACATGCTGCTCCAGGTC 61.024 60.000 12.75 12.75 44.33 3.85
1171 1303 1.451028 GACATGCTGCTCCAGGTCC 60.451 63.158 0.00 0.00 39.79 4.46
1172 1304 2.189191 GACATGCTGCTCCAGGTCCA 62.189 60.000 0.00 0.00 39.79 4.02
1173 1305 1.451567 CATGCTGCTCCAGGTCCAG 60.452 63.158 0.00 5.14 31.21 3.86
1174 1306 2.677289 ATGCTGCTCCAGGTCCAGG 61.677 63.158 0.00 0.00 31.21 4.45
1175 1307 4.106925 GCTGCTCCAGGTCCAGGG 62.107 72.222 0.00 0.00 31.21 4.45
1176 1308 2.608988 CTGCTCCAGGTCCAGGGT 60.609 66.667 0.00 0.00 0.00 4.34
1177 1309 2.121963 TGCTCCAGGTCCAGGGTT 60.122 61.111 0.00 0.00 0.00 4.11
1178 1310 2.352805 GCTCCAGGTCCAGGGTTG 59.647 66.667 0.00 0.00 0.00 3.77
1179 1311 2.529744 GCTCCAGGTCCAGGGTTGT 61.530 63.158 0.00 0.00 0.00 3.32
1180 1312 2.069165 GCTCCAGGTCCAGGGTTGTT 62.069 60.000 0.00 0.00 0.00 2.83
1181 1313 0.250901 CTCCAGGTCCAGGGTTGTTG 60.251 60.000 0.00 0.00 0.00 3.33
1182 1314 1.228552 CCAGGTCCAGGGTTGTTGG 60.229 63.158 0.00 0.00 37.04 3.77
1183 1315 1.536676 CAGGTCCAGGGTTGTTGGT 59.463 57.895 0.00 0.00 37.02 3.67
1184 1316 0.823356 CAGGTCCAGGGTTGTTGGTG 60.823 60.000 0.00 0.00 37.02 4.17
1185 1317 1.229076 GGTCCAGGGTTGTTGGTGT 59.771 57.895 0.00 0.00 37.02 4.16
1186 1318 0.396556 GGTCCAGGGTTGTTGGTGTT 60.397 55.000 0.00 0.00 37.02 3.32
1187 1319 1.480789 GTCCAGGGTTGTTGGTGTTT 58.519 50.000 0.00 0.00 37.02 2.83
1188 1320 1.828595 GTCCAGGGTTGTTGGTGTTTT 59.171 47.619 0.00 0.00 37.02 2.43
1253 1387 3.945436 CGCTAAGCAACGACCACA 58.055 55.556 0.00 0.00 0.00 4.17
1254 1388 1.781555 CGCTAAGCAACGACCACAG 59.218 57.895 0.00 0.00 0.00 3.66
1255 1389 0.944311 CGCTAAGCAACGACCACAGT 60.944 55.000 0.00 0.00 0.00 3.55
1256 1390 1.667756 CGCTAAGCAACGACCACAGTA 60.668 52.381 0.00 0.00 0.00 2.74
1258 1392 1.983605 CTAAGCAACGACCACAGTACG 59.016 52.381 0.00 0.00 0.00 3.67
1270 1404 0.108615 ACAGTACGATGCTGCTCCAC 60.109 55.000 0.00 0.00 37.47 4.02
1302 1451 0.681887 TCGAACAGCACCTATCCGGA 60.682 55.000 6.61 6.61 36.31 5.14
1303 1452 0.389391 CGAACAGCACCTATCCGGAT 59.611 55.000 22.95 22.95 36.31 4.18
1345 1494 0.324614 CCATACAGGGATATGGCGCA 59.675 55.000 10.83 0.00 43.95 6.09
1350 1499 1.525995 AGGGATATGGCGCAAACGG 60.526 57.895 10.83 0.00 40.57 4.44
1402 1551 3.139029 GGCAACTCGGAAGAACGAT 57.861 52.632 0.00 0.00 42.62 3.73
1406 1555 2.876091 CAACTCGGAAGAACGATGCTA 58.124 47.619 0.00 0.00 42.62 3.49
1410 1559 0.924090 CGGAAGAACGATGCTACTGC 59.076 55.000 0.00 0.00 36.35 4.40
1428 1577 1.758440 GCCCTCCCGATGAGTATGCA 61.758 60.000 0.00 0.00 39.65 3.96
1429 1578 0.979665 CCCTCCCGATGAGTATGCAT 59.020 55.000 3.79 3.79 39.65 3.96
1430 1579 1.338484 CCCTCCCGATGAGTATGCATG 60.338 57.143 10.16 0.00 39.65 4.06
1431 1580 1.436600 CTCCCGATGAGTATGCATGC 58.563 55.000 11.82 11.82 36.27 4.06
1434 1583 0.957395 CCGATGAGTATGCATGCCCC 60.957 60.000 16.68 3.60 0.00 5.80
1435 1584 0.250424 CGATGAGTATGCATGCCCCA 60.250 55.000 16.68 9.61 0.00 4.96
1506 1655 0.304705 GCCGGTGCTTTACGATGATG 59.695 55.000 1.90 0.00 33.53 3.07
1508 1657 0.937304 CGGTGCTTTACGATGATGGG 59.063 55.000 0.00 0.00 0.00 4.00
1511 1660 1.331756 GTGCTTTACGATGATGGGCTG 59.668 52.381 0.00 0.00 0.00 4.85
1513 1662 0.947244 CTTTACGATGATGGGCTGGC 59.053 55.000 0.00 0.00 0.00 4.85
1514 1663 0.546122 TTTACGATGATGGGCTGGCT 59.454 50.000 0.00 0.00 0.00 4.75
1515 1664 0.546122 TTACGATGATGGGCTGGCTT 59.454 50.000 0.00 0.00 0.00 4.35
1516 1665 0.546122 TACGATGATGGGCTGGCTTT 59.454 50.000 0.00 0.00 0.00 3.51
1517 1666 0.323725 ACGATGATGGGCTGGCTTTT 60.324 50.000 0.00 0.00 0.00 2.27
1518 1667 0.383231 CGATGATGGGCTGGCTTTTC 59.617 55.000 0.00 0.00 0.00 2.29
1519 1668 0.749049 GATGATGGGCTGGCTTTTCC 59.251 55.000 0.00 0.00 0.00 3.13
1520 1669 0.041535 ATGATGGGCTGGCTTTTCCA 59.958 50.000 0.00 0.00 44.18 3.53
1533 1682 6.987403 TGGCTTTTCCAGGTAAAGTTTTAT 57.013 33.333 17.40 0.00 40.72 1.40
1534 1683 6.754193 TGGCTTTTCCAGGTAAAGTTTTATG 58.246 36.000 17.40 0.00 40.72 1.90
1535 1684 6.551601 TGGCTTTTCCAGGTAAAGTTTTATGA 59.448 34.615 17.40 0.00 40.72 2.15
1536 1685 7.234577 TGGCTTTTCCAGGTAAAGTTTTATGAT 59.765 33.333 17.40 0.00 40.72 2.45
1537 1686 7.545615 GGCTTTTCCAGGTAAAGTTTTATGATG 59.454 37.037 17.40 0.00 35.52 3.07
1547 1696 9.559958 GGTAAAGTTTTATGATGATCACACTTG 57.440 33.333 0.00 0.00 0.00 3.16
1555 1704 2.617250 TGATCACACTTGAAATGCGC 57.383 45.000 0.00 0.00 34.61 6.09
1651 1803 0.464452 CAGAAGGGGGTGACGATACC 59.536 60.000 0.00 0.00 40.10 2.73
1758 1910 2.917600 TCCAGACAGACCTGAGGTACTA 59.082 50.000 2.97 0.00 41.55 1.82
1759 1911 3.018149 CCAGACAGACCTGAGGTACTAC 58.982 54.545 2.97 0.00 41.55 2.73
1760 1912 3.308545 CCAGACAGACCTGAGGTACTACT 60.309 52.174 2.97 0.00 41.55 2.57
1761 1913 4.080469 CCAGACAGACCTGAGGTACTACTA 60.080 50.000 2.97 0.00 41.55 1.82
1762 1914 4.877251 CAGACAGACCTGAGGTACTACTAC 59.123 50.000 2.97 0.00 41.55 2.73
1763 1915 4.784300 AGACAGACCTGAGGTACTACTACT 59.216 45.833 2.97 0.00 41.55 2.57
1765 1917 5.890049 ACAGACCTGAGGTACTACTACTTT 58.110 41.667 2.97 0.00 41.55 2.66
1810 1964 1.300388 CCTTGTGCAAGCAAGTGGC 60.300 57.895 14.07 0.00 43.03 5.01
1988 2142 4.400961 AGCCCGAGCAGCCACTTC 62.401 66.667 0.00 0.00 43.56 3.01
1999 2153 2.358247 CCACTTCGACAACCCCCG 60.358 66.667 0.00 0.00 0.00 5.73
2000 2154 3.047877 CACTTCGACAACCCCCGC 61.048 66.667 0.00 0.00 0.00 6.13
2021 2175 0.179250 CGTCCAATGTTGCGAACGAG 60.179 55.000 0.00 0.00 0.00 4.18
2022 2176 1.144969 GTCCAATGTTGCGAACGAGA 58.855 50.000 0.00 0.00 0.00 4.04
2023 2177 1.126846 GTCCAATGTTGCGAACGAGAG 59.873 52.381 0.00 0.00 0.00 3.20
2024 2178 0.179215 CCAATGTTGCGAACGAGAGC 60.179 55.000 0.00 0.00 0.00 4.09
2025 2179 0.517132 CAATGTTGCGAACGAGAGCG 60.517 55.000 0.00 0.00 44.79 5.03
2038 2192 0.937231 GAGAGCGCGACTAATCCTGC 60.937 60.000 12.10 0.00 0.00 4.85
2039 2193 1.226974 GAGCGCGACTAATCCTGCA 60.227 57.895 12.10 0.00 0.00 4.41
2040 2194 0.598680 GAGCGCGACTAATCCTGCAT 60.599 55.000 12.10 0.00 0.00 3.96
2041 2195 0.179073 AGCGCGACTAATCCTGCATT 60.179 50.000 12.10 0.00 0.00 3.56
2042 2196 1.068588 AGCGCGACTAATCCTGCATTA 59.931 47.619 12.10 0.00 0.00 1.90
2045 2199 3.604772 GCGCGACTAATCCTGCATTAAAG 60.605 47.826 12.10 0.00 0.00 1.85
2046 2200 3.604772 CGCGACTAATCCTGCATTAAAGC 60.605 47.826 0.00 0.00 0.00 3.51
2047 2201 3.304057 GCGACTAATCCTGCATTAAAGCC 60.304 47.826 0.00 0.00 0.00 4.35
2048 2202 3.876914 CGACTAATCCTGCATTAAAGCCA 59.123 43.478 0.00 0.00 0.00 4.75
2049 2203 4.024556 CGACTAATCCTGCATTAAAGCCAG 60.025 45.833 0.00 0.00 0.00 4.85
2050 2204 3.633986 ACTAATCCTGCATTAAAGCCAGC 59.366 43.478 0.00 0.00 0.00 4.85
2051 2205 2.449137 ATCCTGCATTAAAGCCAGCT 57.551 45.000 0.00 0.00 0.00 4.24
2052 2206 3.582998 ATCCTGCATTAAAGCCAGCTA 57.417 42.857 0.00 0.00 0.00 3.32
2054 2208 3.902218 TCCTGCATTAAAGCCAGCTATT 58.098 40.909 0.00 0.00 0.00 1.73
2055 2209 4.280819 TCCTGCATTAAAGCCAGCTATTT 58.719 39.130 0.00 0.00 0.00 1.40
2056 2210 4.339247 TCCTGCATTAAAGCCAGCTATTTC 59.661 41.667 0.00 0.00 0.00 2.17
2057 2211 4.098349 CCTGCATTAAAGCCAGCTATTTCA 59.902 41.667 0.00 0.00 0.00 2.69
2058 2212 5.252969 TGCATTAAAGCCAGCTATTTCAG 57.747 39.130 0.00 0.00 0.00 3.02
2059 2213 4.706476 TGCATTAAAGCCAGCTATTTCAGT 59.294 37.500 0.00 0.00 0.00 3.41
2060 2214 5.185635 TGCATTAAAGCCAGCTATTTCAGTT 59.814 36.000 0.00 0.00 0.00 3.16
2061 2215 5.745769 GCATTAAAGCCAGCTATTTCAGTTC 59.254 40.000 0.00 0.00 0.00 3.01
2062 2216 5.545658 TTAAAGCCAGCTATTTCAGTTCG 57.454 39.130 0.00 0.00 0.00 3.95
2063 2217 2.770164 AGCCAGCTATTTCAGTTCGT 57.230 45.000 0.00 0.00 0.00 3.85
2064 2218 2.350522 AGCCAGCTATTTCAGTTCGTG 58.649 47.619 0.00 0.00 0.00 4.35
2065 2219 1.398390 GCCAGCTATTTCAGTTCGTGG 59.602 52.381 0.00 0.00 0.00 4.94
2066 2220 1.398390 CCAGCTATTTCAGTTCGTGGC 59.602 52.381 0.00 0.00 0.00 5.01
2067 2221 2.076100 CAGCTATTTCAGTTCGTGGCA 58.924 47.619 0.00 0.00 0.00 4.92
2068 2222 2.076863 AGCTATTTCAGTTCGTGGCAC 58.923 47.619 7.79 7.79 0.00 5.01
2069 2223 2.076863 GCTATTTCAGTTCGTGGCACT 58.923 47.619 16.72 0.00 0.00 4.40
2070 2224 3.056107 AGCTATTTCAGTTCGTGGCACTA 60.056 43.478 16.72 0.86 0.00 2.74
2071 2225 3.307242 GCTATTTCAGTTCGTGGCACTAG 59.693 47.826 16.72 8.09 0.00 2.57
2072 2226 1.508632 TTTCAGTTCGTGGCACTAGC 58.491 50.000 16.72 7.00 41.10 3.42
2073 2227 0.666274 TTCAGTTCGTGGCACTAGCG 60.666 55.000 16.72 2.05 43.41 4.26
2074 2228 1.080772 CAGTTCGTGGCACTAGCGA 60.081 57.895 16.72 4.82 43.41 4.93
2075 2229 0.458543 CAGTTCGTGGCACTAGCGAT 60.459 55.000 16.72 0.00 43.41 4.58
2076 2230 0.179134 AGTTCGTGGCACTAGCGATC 60.179 55.000 16.72 7.09 43.41 3.69
2077 2231 0.457853 GTTCGTGGCACTAGCGATCA 60.458 55.000 16.72 0.00 43.41 2.92
2078 2232 0.179137 TTCGTGGCACTAGCGATCAG 60.179 55.000 16.72 0.00 43.41 2.90
2101 2255 5.658634 AGCAGGTACATTGAGACTCTTATCA 59.341 40.000 3.68 0.00 0.00 2.15
2103 2257 6.644592 GCAGGTACATTGAGACTCTTATCATC 59.355 42.308 3.68 0.00 0.00 2.92
2119 2273 3.100207 TCATCCTGATTGTTTTCCCCC 57.900 47.619 0.00 0.00 0.00 5.40
2123 2277 3.238597 TCCTGATTGTTTTCCCCCAAAG 58.761 45.455 0.00 0.00 0.00 2.77
2157 2379 4.525487 CCATATGGGGAATCTTGGTTCATG 59.475 45.833 14.52 0.00 0.00 3.07
2166 2388 6.323225 GGGAATCTTGGTTCATGATTTCTGAT 59.677 38.462 0.00 0.00 38.01 2.90
2171 2393 9.690913 ATCTTGGTTCATGATTTCTGATAAGAA 57.309 29.630 0.00 0.00 0.00 2.52
2191 2415 2.859165 TCTTTGCTTCCGTTCCATCT 57.141 45.000 0.00 0.00 0.00 2.90
2217 2445 7.177878 AGGAATCCTGCTAAATTTTCTCTTCA 58.822 34.615 0.00 0.00 29.57 3.02
2221 2449 5.940470 TCCTGCTAAATTTTCTCTTCACCTC 59.060 40.000 0.00 0.00 0.00 3.85
2224 2452 5.179368 TGCTAAATTTTCTCTTCACCTCGTG 59.821 40.000 0.00 0.00 34.45 4.35
2225 2453 4.489679 AAATTTTCTCTTCACCTCGTGC 57.510 40.909 0.00 0.00 32.98 5.34
2226 2454 2.613026 TTTTCTCTTCACCTCGTGCA 57.387 45.000 0.00 0.00 32.98 4.57
2227 2455 2.154854 TTTCTCTTCACCTCGTGCAG 57.845 50.000 0.00 0.00 32.98 4.41
2228 2456 1.328279 TTCTCTTCACCTCGTGCAGA 58.672 50.000 0.00 0.00 33.88 4.26
2229 2457 1.550327 TCTCTTCACCTCGTGCAGAT 58.450 50.000 0.00 0.00 35.56 2.90
2230 2458 1.474478 TCTCTTCACCTCGTGCAGATC 59.526 52.381 0.00 0.00 35.56 2.75
2231 2459 1.203287 CTCTTCACCTCGTGCAGATCA 59.797 52.381 0.00 0.00 35.56 2.92
2232 2460 1.618343 TCTTCACCTCGTGCAGATCAA 59.382 47.619 0.00 0.00 31.60 2.57
2233 2461 1.728971 CTTCACCTCGTGCAGATCAAC 59.271 52.381 0.00 0.00 28.74 3.18
2234 2462 0.678950 TCACCTCGTGCAGATCAACA 59.321 50.000 0.00 0.00 32.98 3.33
2235 2463 0.792640 CACCTCGTGCAGATCAACAC 59.207 55.000 7.81 7.81 0.00 3.32
2239 2467 4.826600 GTGCAGATCAACACGCAC 57.173 55.556 0.00 0.00 46.85 5.34
2261 2489 1.283321 AGCCATCCAGGAAGAAAGGAC 59.717 52.381 0.00 0.00 41.22 3.85
2262 2490 2.014068 GCCATCCAGGAAGAAAGGACG 61.014 57.143 0.00 0.00 41.22 4.79
2281 2509 1.536943 GGGAGACGCCACTGAACTCT 61.537 60.000 0.00 0.00 38.95 3.24
2287 2515 1.689273 ACGCCACTGAACTCTTCTTCT 59.311 47.619 0.00 0.00 0.00 2.85
2308 2536 1.064946 CTCCGTGGAGATCGAGCAC 59.935 63.158 10.50 0.00 44.53 4.40
2351 2579 2.683933 TCCTCTGCCCCTTCGACC 60.684 66.667 0.00 0.00 0.00 4.79
2447 2726 2.430610 GCCAGCCCAGACGATCTCT 61.431 63.158 0.00 0.00 0.00 3.10
2461 2740 2.600320 CGATCTCTTCTCGGCTTACGTC 60.600 54.545 0.00 0.00 44.69 4.34
2462 2741 1.093159 TCTCTTCTCGGCTTACGTCC 58.907 55.000 0.00 0.00 44.69 4.79
2609 2888 4.504916 CCTCGACGCTCCCTGCTG 62.505 72.222 0.00 0.00 40.11 4.41
2610 2889 3.443925 CTCGACGCTCCCTGCTGA 61.444 66.667 0.00 0.00 40.11 4.26
2611 2890 2.989253 TCGACGCTCCCTGCTGAA 60.989 61.111 0.00 0.00 40.11 3.02
2612 2891 2.507992 CGACGCTCCCTGCTGAAG 60.508 66.667 0.00 0.00 40.11 3.02
2613 2892 2.125350 GACGCTCCCTGCTGAAGG 60.125 66.667 0.00 0.00 46.94 3.46
2614 2893 4.400961 ACGCTCCCTGCTGAAGGC 62.401 66.667 0.00 0.00 45.89 4.35
2615 2894 4.093291 CGCTCCCTGCTGAAGGCT 62.093 66.667 0.00 0.00 45.89 4.58
2616 2895 2.354343 GCTCCCTGCTGAAGGCTT 59.646 61.111 0.00 0.00 45.89 4.35
2617 2896 1.303970 GCTCCCTGCTGAAGGCTTT 60.304 57.895 0.00 0.00 45.89 3.51
2618 2897 1.593296 GCTCCCTGCTGAAGGCTTTG 61.593 60.000 0.00 0.00 45.89 2.77
2619 2898 1.593296 CTCCCTGCTGAAGGCTTTGC 61.593 60.000 15.97 15.97 45.89 3.68
2620 2899 1.904865 CCCTGCTGAAGGCTTTGCA 60.905 57.895 21.52 21.52 45.89 4.08
2666 2945 0.455633 CATGCAGTTTGGCTCGAAGC 60.456 55.000 0.00 0.00 41.46 3.86
2685 2964 1.076438 CCTTCCAAGGGGAGGAGTTT 58.924 55.000 3.25 0.00 46.01 2.66
2694 2973 2.677848 GAGGAGTTTGGGAGGGGC 59.322 66.667 0.00 0.00 0.00 5.80
2695 2974 2.121506 AGGAGTTTGGGAGGGGCA 60.122 61.111 0.00 0.00 0.00 5.36
2710 2989 2.258591 GCACGTGAGAAGGCTCGA 59.741 61.111 22.23 0.00 44.33 4.04
2779 3058 0.987294 TCCAGAAGCTTCAGGAAGGG 59.013 55.000 31.82 19.81 39.54 3.95
2794 3073 2.507471 GGAAGGGATGAATCAGGTCACT 59.493 50.000 0.00 0.00 0.00 3.41
2814 3093 3.088532 CTGAGACTCACTCTAACCTGCT 58.911 50.000 0.00 0.00 45.13 4.24
2818 3097 3.764972 AGACTCACTCTAACCTGCTTACC 59.235 47.826 0.00 0.00 0.00 2.85
2819 3098 3.764972 GACTCACTCTAACCTGCTTACCT 59.235 47.826 0.00 0.00 0.00 3.08
2820 3099 3.511934 ACTCACTCTAACCTGCTTACCTG 59.488 47.826 0.00 0.00 0.00 4.00
2821 3100 2.233922 TCACTCTAACCTGCTTACCTGC 59.766 50.000 0.00 0.00 0.00 4.85
2822 3101 2.028112 CACTCTAACCTGCTTACCTGCA 60.028 50.000 0.00 0.00 41.05 4.41
2823 3102 2.840651 ACTCTAACCTGCTTACCTGCAT 59.159 45.455 0.00 0.00 42.48 3.96
2824 3103 4.030913 ACTCTAACCTGCTTACCTGCATA 58.969 43.478 0.00 0.00 42.48 3.14
2825 3104 4.141914 ACTCTAACCTGCTTACCTGCATAC 60.142 45.833 0.00 0.00 42.48 2.39
2826 3105 4.030913 TCTAACCTGCTTACCTGCATACT 58.969 43.478 0.00 0.00 42.48 2.12
2827 3106 5.205821 TCTAACCTGCTTACCTGCATACTA 58.794 41.667 0.00 0.00 42.48 1.82
2828 3107 5.839063 TCTAACCTGCTTACCTGCATACTAT 59.161 40.000 0.00 0.00 42.48 2.12
2833 3112 3.709141 TGCTTACCTGCATACTATCACCA 59.291 43.478 0.00 0.00 38.12 4.17
2844 3123 6.596497 TGCATACTATCACCATCTTGCATATG 59.404 38.462 0.00 0.00 34.24 1.78
2845 3124 6.820152 GCATACTATCACCATCTTGCATATGA 59.180 38.462 6.97 0.00 0.00 2.15
2850 3129 4.858850 TCACCATCTTGCATATGACCTTT 58.141 39.130 6.97 0.00 0.00 3.11
2854 3133 5.127682 ACCATCTTGCATATGACCTTTTTCC 59.872 40.000 6.97 0.00 0.00 3.13
2862 3148 5.981315 GCATATGACCTTTTTCCATGTGATG 59.019 40.000 6.97 0.00 33.19 3.07
2877 3163 8.667076 TCCATGTGATGAATAATTACAGTCTG 57.333 34.615 0.00 0.00 38.10 3.51
2881 3167 6.878389 TGTGATGAATAATTACAGTCTGCACA 59.122 34.615 0.00 0.00 30.26 4.57
2887 3173 9.045223 TGAATAATTACAGTCTGCACATACATC 57.955 33.333 0.00 0.00 0.00 3.06
2892 3178 7.875327 TTACAGTCTGCACATACATCTACTA 57.125 36.000 0.00 0.00 0.00 1.82
2895 3181 5.683302 CAGTCTGCACATACATCTACTAACG 59.317 44.000 0.00 0.00 0.00 3.18
2896 3182 5.357314 AGTCTGCACATACATCTACTAACGT 59.643 40.000 0.00 0.00 0.00 3.99
3010 3299 3.951037 AGCACAGACATCAGGTAGTAGAG 59.049 47.826 0.00 0.00 0.00 2.43
3055 3344 1.208358 CAGGCAAGTGCACGACATG 59.792 57.895 12.01 9.03 44.36 3.21
3056 3345 1.071299 AGGCAAGTGCACGACATGA 59.929 52.632 12.01 0.00 44.36 3.07
3057 3346 1.207593 GGCAAGTGCACGACATGAC 59.792 57.895 12.01 8.10 44.36 3.06
3058 3347 1.506309 GGCAAGTGCACGACATGACA 61.506 55.000 12.01 0.00 44.36 3.58
3059 3348 0.518636 GCAAGTGCACGACATGACAT 59.481 50.000 12.01 0.00 41.59 3.06
3060 3349 1.726892 GCAAGTGCACGACATGACATG 60.727 52.381 14.02 14.02 41.59 3.21
3061 3350 1.799994 CAAGTGCACGACATGACATGA 59.200 47.619 22.19 0.00 0.00 3.07
3062 3351 1.432514 AGTGCACGACATGACATGAC 58.567 50.000 22.19 14.63 0.00 3.06
3063 3352 1.147473 GTGCACGACATGACATGACA 58.853 50.000 22.19 0.00 0.00 3.58
3064 3353 1.733912 GTGCACGACATGACATGACAT 59.266 47.619 22.19 4.76 0.00 3.06
3123 3413 6.496565 CCTGTCTTCTGATAATACCATCCTCT 59.503 42.308 0.00 0.00 0.00 3.69
3129 3419 7.531857 TCTGATAATACCATCCTCTTCTGTC 57.468 40.000 0.00 0.00 0.00 3.51
3149 3439 1.784525 GCTACGATCGGAGAAATGGG 58.215 55.000 31.42 3.59 43.58 4.00
3150 3440 1.340248 GCTACGATCGGAGAAATGGGA 59.660 52.381 31.42 0.00 43.58 4.37
3151 3441 2.223971 GCTACGATCGGAGAAATGGGAA 60.224 50.000 31.42 0.00 43.58 3.97
3152 3442 2.311124 ACGATCGGAGAAATGGGAAC 57.689 50.000 20.98 0.00 43.58 3.62
3153 3443 1.553248 ACGATCGGAGAAATGGGAACA 59.447 47.619 20.98 0.00 44.73 3.18
3163 3453 4.931292 TGGGAACATGGCCCTCTA 57.069 55.556 22.07 4.37 46.19 2.43
3164 3454 3.112878 TGGGAACATGGCCCTCTAA 57.887 52.632 22.07 4.06 46.19 2.10
3182 3472 4.278310 TCTAATTGGTCACTCGATCCAGA 58.722 43.478 0.00 0.00 32.63 3.86
3194 3484 1.153289 ATCCAGATGCTGACCGTGC 60.153 57.895 0.00 0.00 32.44 5.34
3195 3485 1.902765 ATCCAGATGCTGACCGTGCA 61.903 55.000 0.00 0.00 44.95 4.57
3201 3491 2.246841 TGCTGACCGTGCATTTCTG 58.753 52.632 0.00 0.00 35.31 3.02
3202 3492 1.236616 TGCTGACCGTGCATTTCTGG 61.237 55.000 0.00 0.00 35.31 3.86
3203 3493 1.926511 GCTGACCGTGCATTTCTGGG 61.927 60.000 0.00 0.00 0.00 4.45
3204 3494 1.303236 TGACCGTGCATTTCTGGGG 60.303 57.895 0.00 0.00 0.00 4.96
3208 3498 1.973281 CGTGCATTTCTGGGGCTGT 60.973 57.895 0.00 0.00 0.00 4.40
3233 3529 1.226688 GCTCAGCACATCGAGCGTA 60.227 57.895 0.00 0.00 44.68 4.42
3376 3672 0.670546 CCTGGCGTAGTGGTTCAGTG 60.671 60.000 0.00 0.00 0.00 3.66
3377 3673 0.670546 CTGGCGTAGTGGTTCAGTGG 60.671 60.000 0.00 0.00 0.00 4.00
3378 3674 2.033194 GGCGTAGTGGTTCAGTGGC 61.033 63.158 0.00 0.00 0.00 5.01
3379 3675 1.301401 GCGTAGTGGTTCAGTGGCA 60.301 57.895 0.00 0.00 0.00 4.92
3380 3676 1.566018 GCGTAGTGGTTCAGTGGCAC 61.566 60.000 10.29 10.29 0.00 5.01
3381 3677 0.949105 CGTAGTGGTTCAGTGGCACC 60.949 60.000 15.27 0.00 0.00 5.01
3386 3690 0.774276 TGGTTCAGTGGCACCCATTA 59.226 50.000 15.27 0.00 35.28 1.90
3393 3697 2.624838 CAGTGGCACCCATTATGATTCC 59.375 50.000 15.27 0.00 35.28 3.01
3418 3722 6.199719 CACTGCAGAGTATGTGTATGTATGTG 59.800 42.308 23.35 0.00 0.00 3.21
3424 3728 4.738252 AGTATGTGTATGTATGTGCGAACG 59.262 41.667 0.00 0.00 0.00 3.95
3437 3741 0.437295 GCGAACGAGCGTGTAAATGT 59.563 50.000 0.00 0.00 0.00 2.71
3438 3742 1.650153 GCGAACGAGCGTGTAAATGTA 59.350 47.619 0.00 0.00 0.00 2.29
3450 3754 7.864686 AGCGTGTAAATGTAGTACGTATGATA 58.135 34.615 0.00 0.00 37.12 2.15
3451 3755 7.800380 AGCGTGTAAATGTAGTACGTATGATAC 59.200 37.037 0.00 3.76 37.12 2.24
3478 3783 1.294659 CCTTTGACAGTCTGAGCGCC 61.295 60.000 6.91 0.00 0.00 6.53
3513 3818 2.036475 CCTGATCGACCTAGTTCCATGG 59.964 54.545 4.97 4.97 0.00 3.66
3514 3819 2.036475 CTGATCGACCTAGTTCCATGGG 59.964 54.545 13.02 0.00 0.00 4.00
3515 3820 0.759346 ATCGACCTAGTTCCATGGGC 59.241 55.000 13.02 5.47 0.00 5.36
3516 3821 0.616395 TCGACCTAGTTCCATGGGCA 60.616 55.000 13.02 0.00 0.00 5.36
3517 3822 0.179073 CGACCTAGTTCCATGGGCAG 60.179 60.000 13.02 3.98 0.00 4.85
3518 3823 1.204146 GACCTAGTTCCATGGGCAGA 58.796 55.000 13.02 0.00 0.00 4.26
3519 3824 0.912486 ACCTAGTTCCATGGGCAGAC 59.088 55.000 13.02 6.16 0.00 3.51
3520 3825 0.181350 CCTAGTTCCATGGGCAGACC 59.819 60.000 13.02 0.00 40.81 3.85
3521 3826 0.179073 CTAGTTCCATGGGCAGACCG 60.179 60.000 13.02 0.00 44.64 4.79
3522 3827 2.252072 TAGTTCCATGGGCAGACCGC 62.252 60.000 13.02 0.00 44.64 5.68
3536 3841 4.873129 CCGCCCGGTCAGATCACG 62.873 72.222 0.00 0.00 0.00 4.35
3537 3842 3.822192 CGCCCGGTCAGATCACGA 61.822 66.667 0.00 0.00 0.00 4.35
3538 3843 2.577059 GCCCGGTCAGATCACGAA 59.423 61.111 0.00 0.00 0.00 3.85
3539 3844 1.079405 GCCCGGTCAGATCACGAAA 60.079 57.895 0.00 0.00 0.00 3.46
3540 3845 0.462047 GCCCGGTCAGATCACGAAAT 60.462 55.000 0.00 0.00 0.00 2.17
3541 3846 2.012051 GCCCGGTCAGATCACGAAATT 61.012 52.381 0.00 0.00 0.00 1.82
3542 3847 2.356135 CCCGGTCAGATCACGAAATTT 58.644 47.619 0.00 0.00 0.00 1.82
3543 3848 2.351726 CCCGGTCAGATCACGAAATTTC 59.648 50.000 8.20 8.20 0.00 2.17
3544 3849 3.000041 CCGGTCAGATCACGAAATTTCA 59.000 45.455 17.99 0.00 0.00 2.69
3545 3850 3.435327 CCGGTCAGATCACGAAATTTCAA 59.565 43.478 17.99 3.46 0.00 2.69
3546 3851 4.094887 CCGGTCAGATCACGAAATTTCAAT 59.905 41.667 17.99 8.00 0.00 2.57
3547 3852 5.258622 CGGTCAGATCACGAAATTTCAATC 58.741 41.667 17.99 15.33 0.00 2.67
3548 3853 5.573146 GGTCAGATCACGAAATTTCAATCC 58.427 41.667 17.99 3.29 0.00 3.01
3549 3854 5.123820 GGTCAGATCACGAAATTTCAATCCA 59.876 40.000 17.99 5.15 0.00 3.41
3550 3855 6.253746 GTCAGATCACGAAATTTCAATCCAG 58.746 40.000 17.99 11.72 0.00 3.86
3551 3856 6.092670 GTCAGATCACGAAATTTCAATCCAGA 59.907 38.462 17.99 13.34 0.00 3.86
3552 3857 6.092670 TCAGATCACGAAATTTCAATCCAGAC 59.907 38.462 17.99 2.19 0.00 3.51
3553 3858 4.661993 TCACGAAATTTCAATCCAGACG 57.338 40.909 17.99 4.03 0.00 4.18
3554 3859 3.435327 TCACGAAATTTCAATCCAGACGG 59.565 43.478 17.99 0.54 0.00 4.79
3556 3861 3.435671 ACGAAATTTCAATCCAGACGGAC 59.564 43.478 17.99 0.00 46.79 4.79
3557 3862 3.483574 CGAAATTTCAATCCAGACGGACG 60.484 47.826 17.99 0.00 46.79 4.79
3558 3863 1.369625 ATTTCAATCCAGACGGACGC 58.630 50.000 0.00 0.00 46.79 5.19
3559 3864 0.034198 TTTCAATCCAGACGGACGCA 59.966 50.000 0.00 0.00 46.79 5.24
3560 3865 0.249120 TTCAATCCAGACGGACGCAT 59.751 50.000 0.00 0.00 46.79 4.73
3561 3866 0.179111 TCAATCCAGACGGACGCATC 60.179 55.000 0.00 0.00 46.79 3.91
3562 3867 0.460109 CAATCCAGACGGACGCATCA 60.460 55.000 0.00 0.00 46.79 3.07
3563 3868 0.249120 AATCCAGACGGACGCATCAA 59.751 50.000 0.00 0.00 46.79 2.57
3564 3869 0.249120 ATCCAGACGGACGCATCAAA 59.751 50.000 0.00 0.00 46.79 2.69
3565 3870 0.669318 TCCAGACGGACGCATCAAAC 60.669 55.000 0.00 0.00 35.91 2.93
3566 3871 1.416049 CAGACGGACGCATCAAACG 59.584 57.895 0.00 0.00 0.00 3.60
3567 3872 1.006825 CAGACGGACGCATCAAACGA 61.007 55.000 0.00 0.00 0.00 3.85
3568 3873 0.732880 AGACGGACGCATCAAACGAG 60.733 55.000 0.00 0.00 0.00 4.18
3569 3874 2.279937 GACGGACGCATCAAACGAGC 62.280 60.000 0.00 0.00 0.00 5.03
3570 3875 2.785258 GGACGCATCAAACGAGCC 59.215 61.111 0.00 0.00 0.00 4.70
3573 3878 1.970917 GACGCATCAAACGAGCCCAG 61.971 60.000 0.00 0.00 0.00 4.45
3577 3882 0.670546 CATCAAACGAGCCCAGACGT 60.671 55.000 0.00 0.00 44.57 4.34
3582 3887 4.796231 CGAGCCCAGACGTTCGGG 62.796 72.222 16.87 16.87 46.15 5.14
3587 3892 2.432628 CCAGACGTTCGGGCTGAC 60.433 66.667 15.05 0.00 0.00 3.51
3604 3909 3.255888 GCTGACCGACACCTATCATATCA 59.744 47.826 0.00 0.00 0.00 2.15
3605 3910 4.617067 GCTGACCGACACCTATCATATCAG 60.617 50.000 0.00 0.00 35.29 2.90
3606 3911 4.470602 TGACCGACACCTATCATATCAGT 58.529 43.478 0.00 0.00 0.00 3.41
3608 3913 4.730966 ACCGACACCTATCATATCAGTCT 58.269 43.478 0.00 0.00 0.00 3.24
3609 3914 5.877491 ACCGACACCTATCATATCAGTCTA 58.123 41.667 0.00 0.00 0.00 2.59
3610 3915 6.486056 ACCGACACCTATCATATCAGTCTAT 58.514 40.000 0.00 0.00 0.00 1.98
3612 3917 8.275758 ACCGACACCTATCATATCAGTCTATAT 58.724 37.037 0.00 0.00 0.00 0.86
3613 3918 9.780186 CCGACACCTATCATATCAGTCTATATA 57.220 37.037 0.00 0.00 0.00 0.86
3623 3929 4.108501 TCAGTCTATATACAGGGCGGAA 57.891 45.455 0.00 0.00 0.00 4.30
3628 3934 4.222145 GTCTATATACAGGGCGGAAATGGA 59.778 45.833 0.00 0.00 0.00 3.41
3630 3936 1.213296 ATACAGGGCGGAAATGGAGT 58.787 50.000 0.00 0.00 0.00 3.85
3631 3937 0.251916 TACAGGGCGGAAATGGAGTG 59.748 55.000 0.00 0.00 0.00 3.51
3633 3939 3.140814 GGGCGGAAATGGAGTGGC 61.141 66.667 0.00 0.00 0.00 5.01
3690 3996 1.530891 CTAGCCTAGCCCACGCCTA 60.531 63.158 0.00 0.00 34.57 3.93
3693 3999 2.444140 CCTAGCCCACGCCTACCT 60.444 66.667 0.00 0.00 34.57 3.08
3704 4011 2.427453 CACGCCTACCTCACAAGTATCT 59.573 50.000 0.00 0.00 0.00 1.98
3711 4019 5.830457 CCTACCTCACAAGTATCTCATCTGA 59.170 44.000 0.00 0.00 0.00 3.27
3714 4022 6.638610 ACCTCACAAGTATCTCATCTGAAAG 58.361 40.000 0.00 0.00 0.00 2.62
3734 4042 2.039879 AGACCCTAAACCGCAGTCAATT 59.960 45.455 0.00 0.00 0.00 2.32
3736 4044 2.224670 ACCCTAAACCGCAGTCAATTCA 60.225 45.455 0.00 0.00 0.00 2.57
3764 4073 3.141488 CACTCCCCTCTCCGTCCG 61.141 72.222 0.00 0.00 0.00 4.79
3770 4079 2.835431 CCTCTCCGTCCGCTCCAT 60.835 66.667 0.00 0.00 0.00 3.41
3790 4099 2.536761 TTTTGATCCACTCCGAACGT 57.463 45.000 0.00 0.00 0.00 3.99
3791 4100 1.790755 TTTGATCCACTCCGAACGTG 58.209 50.000 0.00 0.00 0.00 4.49
4065 4389 4.910585 CCAGGTACGCCGCCCATC 62.911 72.222 0.00 0.00 40.50 3.51
4066 4390 4.155733 CAGGTACGCCGCCCATCA 62.156 66.667 0.00 0.00 40.50 3.07
4067 4391 3.849951 AGGTACGCCGCCCATCAG 61.850 66.667 0.00 0.00 40.50 2.90
4068 4392 4.157120 GGTACGCCGCCCATCAGT 62.157 66.667 0.00 0.00 0.00 3.41
4069 4393 2.585247 GTACGCCGCCCATCAGTC 60.585 66.667 0.00 0.00 0.00 3.51
4070 4394 3.845259 TACGCCGCCCATCAGTCC 61.845 66.667 0.00 0.00 0.00 3.85
4074 4398 3.716195 CCGCCCATCAGTCCACCA 61.716 66.667 0.00 0.00 0.00 4.17
4097 4421 2.526873 ACCACCCTCTGCTTCGGT 60.527 61.111 0.00 0.00 0.00 4.69
4185 4525 2.545596 CGAGGCACAAGCAGCAACA 61.546 57.895 0.00 0.00 44.61 3.33
4205 4545 2.370445 GCAAGGGAGAGGGCAGCTA 61.370 63.158 0.00 0.00 0.00 3.32
4208 4548 3.541713 GGGAGAGGGCAGCTACGG 61.542 72.222 0.00 0.00 0.00 4.02
4209 4549 3.541713 GGAGAGGGCAGCTACGGG 61.542 72.222 0.00 0.00 0.00 5.28
4210 4550 3.541713 GAGAGGGCAGCTACGGGG 61.542 72.222 0.00 0.00 0.00 5.73
4233 4579 3.788766 GATGTCCGCGCGCTGTTT 61.789 61.111 30.48 11.67 0.00 2.83
4239 4585 4.520846 CGCGCGCTGTTTGATCCC 62.521 66.667 30.48 0.00 0.00 3.85
4244 4590 1.079127 CGCTGTTTGATCCCGAGGT 60.079 57.895 0.00 0.00 0.00 3.85
4245 4591 1.084370 CGCTGTTTGATCCCGAGGTC 61.084 60.000 0.00 0.00 0.00 3.85
4267 4614 4.877619 TCCTCGCGCCGATCCTCT 62.878 66.667 0.00 0.00 34.61 3.69
4268 4615 4.637489 CCTCGCGCCGATCCTCTG 62.637 72.222 0.00 0.00 34.61 3.35
4274 4621 2.841988 GCCGATCCTCTGCCCTCT 60.842 66.667 0.00 0.00 0.00 3.69
4281 4628 1.680651 CCTCTGCCCTCTCTCACGT 60.681 63.158 0.00 0.00 0.00 4.49
4285 4632 4.500116 GCCCTCTCTCACGTCGGC 62.500 72.222 0.00 0.00 0.00 5.54
4287 4634 3.125573 CCTCTCTCACGTCGGCGA 61.126 66.667 20.03 4.99 42.00 5.54
4292 4639 2.504244 CTCACGTCGGCGAAGACC 60.504 66.667 28.54 7.53 42.00 3.85
4293 4640 3.263503 CTCACGTCGGCGAAGACCA 62.264 63.158 28.54 10.74 42.00 4.02
4299 4646 3.118454 CGGCGAAGACCAATGCGT 61.118 61.111 0.00 0.00 0.00 5.24
4301 4648 2.032634 GGCGAAGACCAATGCGTGA 61.033 57.895 0.00 0.00 0.00 4.35
4316 4663 4.015406 TGACGCCTCCGCCACAAT 62.015 61.111 0.00 0.00 38.22 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.801913 CGACGTACCAGCAGCTGAC 60.802 63.158 24.90 13.78 32.44 3.51
5 6 2.566529 CGACGTACCAGCAGCTGA 59.433 61.111 24.90 1.09 32.44 4.26
6 7 3.181967 GCGACGTACCAGCAGCTG 61.182 66.667 16.23 16.23 0.00 4.24
7 8 4.778415 CGCGACGTACCAGCAGCT 62.778 66.667 0.00 0.00 0.00 4.24
55 56 1.018752 CATGACAATGGCGTCGTGGA 61.019 55.000 5.55 0.00 45.31 4.02
60 61 1.959042 ATCCTCATGACAATGGCGTC 58.041 50.000 0.00 0.00 34.30 5.19
75 76 3.004734 GCTTGCTTGTGTTGTGTAATCCT 59.995 43.478 0.00 0.00 0.00 3.24
76 77 3.243367 TGCTTGCTTGTGTTGTGTAATCC 60.243 43.478 0.00 0.00 0.00 3.01
102 103 2.323105 CGTCGGTGTGTTGTGTGC 59.677 61.111 0.00 0.00 0.00 4.57
149 177 4.108336 CGTGATTGACAACTCATCTCGAT 58.892 43.478 5.48 0.00 30.70 3.59
154 182 1.061131 CGCCGTGATTGACAACTCATC 59.939 52.381 0.00 0.00 0.00 2.92
155 183 1.078709 CGCCGTGATTGACAACTCAT 58.921 50.000 0.00 0.00 0.00 2.90
156 184 0.032815 TCGCCGTGATTGACAACTCA 59.967 50.000 0.00 0.00 0.00 3.41
211 239 0.741221 GGACGCCATGGTCACTCTTC 60.741 60.000 14.67 0.00 38.70 2.87
328 364 2.421739 GGTGATCGGGATCGGGTG 59.578 66.667 4.36 0.00 40.63 4.61
444 485 0.521291 TACGTGCCGTTAAGCTACGT 59.479 50.000 12.64 12.64 45.50 3.57
591 642 1.654954 CTAGCTACGGCCACTCACGT 61.655 60.000 2.24 0.00 46.17 4.49
596 647 2.754658 ACGCTAGCTACGGCCACT 60.755 61.111 13.93 0.00 39.73 4.00
631 682 0.895530 AGAATCGCTCACTTTCCCGA 59.104 50.000 0.00 0.00 0.00 5.14
658 709 1.445582 CGCGAAAGGAGTTAGGCGT 60.446 57.895 0.00 0.00 37.43 5.68
684 735 1.747355 GGGAGCTACGTACTGTGCTTA 59.253 52.381 8.28 0.00 35.84 3.09
685 736 0.531200 GGGAGCTACGTACTGTGCTT 59.469 55.000 8.28 0.00 35.84 3.91
686 737 0.611062 TGGGAGCTACGTACTGTGCT 60.611 55.000 6.75 6.75 37.56 4.40
688 739 1.174783 AGTGGGAGCTACGTACTGTG 58.825 55.000 3.85 0.00 0.00 3.66
691 742 0.531200 GCAAGTGGGAGCTACGTACT 59.469 55.000 0.00 0.00 0.00 2.73
693 744 1.509463 CGCAAGTGGGAGCTACGTA 59.491 57.895 0.00 0.00 0.00 3.57
731 831 1.687146 CCTGTGGAGAGCTAGCCCA 60.687 63.158 12.13 9.25 0.00 5.36
732 832 2.439104 CCCTGTGGAGAGCTAGCCC 61.439 68.421 12.13 6.31 0.00 5.19
734 834 0.747852 GTACCCTGTGGAGAGCTAGC 59.252 60.000 6.62 6.62 34.81 3.42
735 835 2.445682 AGTACCCTGTGGAGAGCTAG 57.554 55.000 0.00 0.00 34.81 3.42
736 836 2.423088 GCTAGTACCCTGTGGAGAGCTA 60.423 54.545 0.00 0.00 34.81 3.32
741 841 1.135083 CAACGCTAGTACCCTGTGGAG 60.135 57.143 0.00 0.00 34.81 3.86
742 842 0.892755 CAACGCTAGTACCCTGTGGA 59.107 55.000 0.00 0.00 34.81 4.02
744 844 0.108329 CCCAACGCTAGTACCCTGTG 60.108 60.000 0.00 0.00 0.00 3.66
745 845 1.896122 GCCCAACGCTAGTACCCTGT 61.896 60.000 0.00 0.00 0.00 4.00
748 848 2.202837 CGCCCAACGCTAGTACCC 60.203 66.667 0.00 0.00 34.21 3.69
788 906 2.747989 CGCGTCCTCCTAGCTTATATCA 59.252 50.000 0.00 0.00 0.00 2.15
823 947 1.202722 GGCTATTAGGTAAAGCGGGCA 60.203 52.381 0.00 0.00 37.11 5.36
824 948 1.520494 GGCTATTAGGTAAAGCGGGC 58.480 55.000 0.00 0.00 37.11 6.13
825 949 1.069668 ACGGCTATTAGGTAAAGCGGG 59.930 52.381 6.16 0.00 39.93 6.13
827 951 3.088194 TGACGGCTATTAGGTAAAGCG 57.912 47.619 0.00 0.00 37.11 4.68
828 952 4.186159 TGTTGACGGCTATTAGGTAAAGC 58.814 43.478 0.00 0.00 35.47 3.51
829 953 5.657474 TCTGTTGACGGCTATTAGGTAAAG 58.343 41.667 0.00 0.00 0.00 1.85
830 954 5.664294 TCTGTTGACGGCTATTAGGTAAA 57.336 39.130 0.00 0.00 0.00 2.01
831 955 5.664294 TTCTGTTGACGGCTATTAGGTAA 57.336 39.130 0.00 0.00 0.00 2.85
845 969 1.806542 GAGCAAGCCGAATTCTGTTGA 59.193 47.619 12.82 0.00 0.00 3.18
852 976 1.078848 AGAGCGAGCAAGCCGAATT 60.079 52.632 7.03 0.00 38.01 2.17
857 981 2.236382 CGATCAGAGCGAGCAAGCC 61.236 63.158 0.46 0.00 38.01 4.35
894 1019 2.202851 AAGCGAGCCGAGCAGATG 60.203 61.111 0.00 0.00 37.01 2.90
953 1085 2.549198 GCACACAGCAAGCAGAGCA 61.549 57.895 0.00 0.00 44.79 4.26
992 1124 1.010419 CGCATGCATCATCGATCCGA 61.010 55.000 19.57 0.00 41.13 4.55
1061 1193 2.996631 AGCAGATCAAAAGAAGCCGAT 58.003 42.857 0.00 0.00 0.00 4.18
1064 1196 3.572584 CACAAGCAGATCAAAAGAAGCC 58.427 45.455 0.00 0.00 0.00 4.35
1070 1202 4.090761 AGAGACCACAAGCAGATCAAAA 57.909 40.909 0.00 0.00 0.00 2.44
1074 1206 2.430332 AGCTAGAGACCACAAGCAGATC 59.570 50.000 0.00 0.00 37.44 2.75
1078 1210 4.826274 ATTAAGCTAGAGACCACAAGCA 57.174 40.909 0.00 0.00 37.44 3.91
1079 1211 5.674820 GCAAATTAAGCTAGAGACCACAAGC 60.675 44.000 0.00 0.00 35.16 4.01
1083 1215 4.201861 GCAGCAAATTAAGCTAGAGACCAC 60.202 45.833 5.14 0.00 41.14 4.16
1084 1216 3.941483 GCAGCAAATTAAGCTAGAGACCA 59.059 43.478 5.14 0.00 41.14 4.02
1085 1217 3.313803 GGCAGCAAATTAAGCTAGAGACC 59.686 47.826 5.14 0.55 41.14 3.85
1104 1236 3.950794 GAAGATGACCGCCGTGGCA 62.951 63.158 12.06 0.00 43.94 4.92
1105 1237 3.195698 GAAGATGACCGCCGTGGC 61.196 66.667 0.00 0.00 43.94 5.01
1106 1238 1.079127 AAGAAGATGACCGCCGTGG 60.079 57.895 0.00 0.00 46.41 4.94
1108 1240 1.741770 GCAAGAAGATGACCGCCGT 60.742 57.895 0.00 0.00 0.00 5.68
1110 1242 1.576356 CTAGCAAGAAGATGACCGCC 58.424 55.000 0.00 0.00 0.00 6.13
1111 1243 0.933796 GCTAGCAAGAAGATGACCGC 59.066 55.000 10.63 0.00 0.00 5.68
1113 1245 1.939255 GCAGCTAGCAAGAAGATGACC 59.061 52.381 18.83 0.00 44.79 4.02
1146 1278 2.030371 TGGAGCAGCATGTCACAAAAA 58.970 42.857 0.00 0.00 39.31 1.94
1147 1279 1.610038 CTGGAGCAGCATGTCACAAAA 59.390 47.619 0.00 0.00 39.31 2.44
1148 1280 1.241165 CTGGAGCAGCATGTCACAAA 58.759 50.000 0.00 0.00 39.31 2.83
1149 1281 0.607217 CCTGGAGCAGCATGTCACAA 60.607 55.000 0.00 0.00 39.31 3.33
1150 1282 1.002990 CCTGGAGCAGCATGTCACA 60.003 57.895 0.00 0.00 39.31 3.58
1151 1283 1.002868 ACCTGGAGCAGCATGTCAC 60.003 57.895 0.00 0.00 39.31 3.67
1152 1284 1.297689 GACCTGGAGCAGCATGTCA 59.702 57.895 0.00 0.00 39.31 3.58
1153 1285 1.451028 GGACCTGGAGCAGCATGTC 60.451 63.158 0.00 0.00 39.31 3.06
1154 1286 2.194388 CTGGACCTGGAGCAGCATGT 62.194 60.000 0.00 0.00 39.31 3.21
1155 1287 1.451567 CTGGACCTGGAGCAGCATG 60.452 63.158 0.00 0.00 40.87 4.06
1156 1288 2.677289 CCTGGACCTGGAGCAGCAT 61.677 63.158 12.01 0.00 0.00 3.79
1157 1289 3.324930 CCTGGACCTGGAGCAGCA 61.325 66.667 12.01 0.00 0.00 4.41
1158 1290 4.106925 CCCTGGACCTGGAGCAGC 62.107 72.222 18.68 0.00 0.00 5.25
1159 1291 2.227036 AACCCTGGACCTGGAGCAG 61.227 63.158 18.68 4.56 0.00 4.24
1160 1292 2.121963 AACCCTGGACCTGGAGCA 60.122 61.111 18.68 0.00 0.00 4.26
1161 1293 2.069165 AACAACCCTGGACCTGGAGC 62.069 60.000 18.68 0.00 0.00 4.70
1162 1294 0.250901 CAACAACCCTGGACCTGGAG 60.251 60.000 18.68 10.93 0.00 3.86
1163 1295 1.715019 CCAACAACCCTGGACCTGGA 61.715 60.000 18.68 0.00 35.85 3.86
1164 1296 1.228552 CCAACAACCCTGGACCTGG 60.229 63.158 10.46 10.46 35.85 4.45
1165 1297 0.823356 CACCAACAACCCTGGACCTG 60.823 60.000 0.00 0.00 37.40 4.00
1166 1298 1.286305 ACACCAACAACCCTGGACCT 61.286 55.000 0.00 0.00 37.40 3.85
1167 1299 0.396556 AACACCAACAACCCTGGACC 60.397 55.000 0.00 0.00 37.40 4.46
1168 1300 1.480789 AAACACCAACAACCCTGGAC 58.519 50.000 0.00 0.00 37.40 4.02
1169 1301 1.827969 CAAAACACCAACAACCCTGGA 59.172 47.619 0.00 0.00 37.40 3.86
1170 1302 1.827969 TCAAAACACCAACAACCCTGG 59.172 47.619 0.00 0.00 40.05 4.45
1171 1303 3.716601 GATCAAAACACCAACAACCCTG 58.283 45.455 0.00 0.00 0.00 4.45
1172 1304 2.360801 CGATCAAAACACCAACAACCCT 59.639 45.455 0.00 0.00 0.00 4.34
1173 1305 2.738135 CGATCAAAACACCAACAACCC 58.262 47.619 0.00 0.00 0.00 4.11
1174 1306 2.124122 GCGATCAAAACACCAACAACC 58.876 47.619 0.00 0.00 0.00 3.77
1175 1307 3.078594 AGCGATCAAAACACCAACAAC 57.921 42.857 0.00 0.00 0.00 3.32
1176 1308 3.380004 AGAAGCGATCAAAACACCAACAA 59.620 39.130 0.00 0.00 0.00 2.83
1177 1309 2.948979 AGAAGCGATCAAAACACCAACA 59.051 40.909 0.00 0.00 0.00 3.33
1178 1310 3.626028 AGAAGCGATCAAAACACCAAC 57.374 42.857 0.00 0.00 0.00 3.77
1179 1311 3.882888 AGAAGAAGCGATCAAAACACCAA 59.117 39.130 0.00 0.00 0.00 3.67
1180 1312 3.476552 AGAAGAAGCGATCAAAACACCA 58.523 40.909 0.00 0.00 0.00 4.17
1181 1313 4.489679 AAGAAGAAGCGATCAAAACACC 57.510 40.909 0.00 0.00 0.00 4.16
1182 1314 5.971202 TGAAAAGAAGAAGCGATCAAAACAC 59.029 36.000 0.00 0.00 0.00 3.32
1183 1315 6.130298 TGAAAAGAAGAAGCGATCAAAACA 57.870 33.333 0.00 0.00 0.00 2.83
1184 1316 5.626955 CCTGAAAAGAAGAAGCGATCAAAAC 59.373 40.000 0.00 0.00 0.00 2.43
1185 1317 5.762045 CCTGAAAAGAAGAAGCGATCAAAA 58.238 37.500 0.00 0.00 0.00 2.44
1186 1318 4.320494 GCCTGAAAAGAAGAAGCGATCAAA 60.320 41.667 0.00 0.00 0.00 2.69
1187 1319 3.189287 GCCTGAAAAGAAGAAGCGATCAA 59.811 43.478 0.00 0.00 0.00 2.57
1188 1320 2.744202 GCCTGAAAAGAAGAAGCGATCA 59.256 45.455 0.00 0.00 0.00 2.92
1253 1387 1.139734 CGTGGAGCAGCATCGTACT 59.860 57.895 0.00 0.00 0.00 2.73
1254 1388 1.878522 CCGTGGAGCAGCATCGTAC 60.879 63.158 0.00 0.00 0.00 3.67
1255 1389 2.494445 CCGTGGAGCAGCATCGTA 59.506 61.111 0.00 0.00 0.00 3.43
1281 1421 1.603172 CCGGATAGGTGCTGTTCGATC 60.603 57.143 0.00 0.00 34.51 3.69
1290 1430 1.139058 AGAACACATCCGGATAGGTGC 59.861 52.381 26.66 21.02 41.99 5.01
1302 1451 2.198827 TGGATTTGCCGAGAACACAT 57.801 45.000 0.00 0.00 40.66 3.21
1303 1452 1.974265 TTGGATTTGCCGAGAACACA 58.026 45.000 0.00 0.00 40.66 3.72
1337 1486 1.092921 GGTGATCCGTTTGCGCCATA 61.093 55.000 4.18 0.00 36.67 2.74
1338 1487 2.406616 GGTGATCCGTTTGCGCCAT 61.407 57.895 4.18 0.00 36.67 4.40
1345 1494 0.820074 TTTGGCGTGGTGATCCGTTT 60.820 50.000 0.00 0.00 36.30 3.60
1350 1499 1.635663 CCTCGTTTGGCGTGGTGATC 61.636 60.000 0.00 0.00 45.93 2.92
1402 1551 2.041922 ATCGGGAGGGCAGTAGCA 60.042 61.111 0.00 0.00 44.61 3.49
1488 1637 0.937304 CCATCATCGTAAAGCACCGG 59.063 55.000 0.00 0.00 0.00 5.28
1489 1638 0.937304 CCCATCATCGTAAAGCACCG 59.063 55.000 0.00 0.00 0.00 4.94
1499 1648 0.383231 GAAAAGCCAGCCCATCATCG 59.617 55.000 0.00 0.00 0.00 3.84
1511 1660 6.988522 TCATAAAACTTTACCTGGAAAAGCC 58.011 36.000 0.00 0.00 37.44 4.35
1515 1664 9.527157 TGATCATCATAAAACTTTACCTGGAAA 57.473 29.630 0.00 0.00 0.00 3.13
1516 1665 8.956426 GTGATCATCATAAAACTTTACCTGGAA 58.044 33.333 0.00 0.00 0.00 3.53
1517 1666 8.106462 TGTGATCATCATAAAACTTTACCTGGA 58.894 33.333 0.00 0.00 0.00 3.86
1518 1667 8.184192 GTGTGATCATCATAAAACTTTACCTGG 58.816 37.037 0.00 0.00 0.00 4.45
1519 1668 8.950210 AGTGTGATCATCATAAAACTTTACCTG 58.050 33.333 0.00 0.00 0.00 4.00
1520 1669 9.520515 AAGTGTGATCATCATAAAACTTTACCT 57.479 29.630 0.00 0.00 0.00 3.08
1521 1670 9.559958 CAAGTGTGATCATCATAAAACTTTACC 57.440 33.333 0.00 0.00 0.00 2.85
1526 1675 9.850628 CATTTCAAGTGTGATCATCATAAAACT 57.149 29.630 0.00 0.00 32.48 2.66
1527 1676 8.589629 GCATTTCAAGTGTGATCATCATAAAAC 58.410 33.333 0.00 0.00 32.48 2.43
1528 1677 7.485595 CGCATTTCAAGTGTGATCATCATAAAA 59.514 33.333 0.00 0.00 32.48 1.52
1529 1678 6.968335 CGCATTTCAAGTGTGATCATCATAAA 59.032 34.615 0.00 0.00 32.48 1.40
1530 1679 6.488817 CGCATTTCAAGTGTGATCATCATAA 58.511 36.000 0.00 0.00 32.48 1.90
1531 1680 5.504501 GCGCATTTCAAGTGTGATCATCATA 60.505 40.000 0.30 0.00 32.48 2.15
1532 1681 4.732647 GCGCATTTCAAGTGTGATCATCAT 60.733 41.667 0.30 0.00 32.48 2.45
1533 1682 3.426560 GCGCATTTCAAGTGTGATCATCA 60.427 43.478 0.30 0.00 32.48 3.07
1534 1683 3.103738 GCGCATTTCAAGTGTGATCATC 58.896 45.455 0.30 0.00 32.48 2.92
1535 1684 2.476686 CGCGCATTTCAAGTGTGATCAT 60.477 45.455 8.75 0.00 32.48 2.45
1536 1685 1.136000 CGCGCATTTCAAGTGTGATCA 60.136 47.619 8.75 0.00 32.48 2.92
1537 1686 1.527696 CGCGCATTTCAAGTGTGATC 58.472 50.000 8.75 0.00 32.48 2.92
1547 1696 4.403137 TGCACCTGCGCGCATTTC 62.403 61.111 36.48 22.78 45.83 2.17
1564 1713 1.604278 GCGGAGAACAGTTTTGCTTCT 59.396 47.619 0.00 0.00 31.68 2.85
1810 1964 5.877031 ACGCATACTGTACAGTACTAACAG 58.123 41.667 32.61 25.26 45.61 3.16
1974 2128 2.811317 GTCGAAGTGGCTGCTCGG 60.811 66.667 8.79 0.00 0.00 4.63
1975 2129 1.664649 TTGTCGAAGTGGCTGCTCG 60.665 57.895 0.00 0.63 0.00 5.03
1976 2130 1.569479 GGTTGTCGAAGTGGCTGCTC 61.569 60.000 0.00 0.00 0.00 4.26
1977 2131 1.598130 GGTTGTCGAAGTGGCTGCT 60.598 57.895 0.00 0.00 0.00 4.24
1978 2132 2.617274 GGGTTGTCGAAGTGGCTGC 61.617 63.158 0.00 0.00 0.00 5.25
1979 2133 1.966451 GGGGTTGTCGAAGTGGCTG 60.966 63.158 0.00 0.00 0.00 4.85
1999 2153 2.622011 TTCGCAACATTGGACGGGC 61.622 57.895 0.00 0.00 0.00 6.13
2000 2154 1.209127 GTTCGCAACATTGGACGGG 59.791 57.895 0.00 0.00 0.00 5.28
2021 2175 0.598680 ATGCAGGATTAGTCGCGCTC 60.599 55.000 5.56 0.00 0.00 5.03
2022 2176 0.179073 AATGCAGGATTAGTCGCGCT 60.179 50.000 5.56 4.52 0.00 5.92
2023 2177 1.497991 TAATGCAGGATTAGTCGCGC 58.502 50.000 0.00 0.00 0.00 6.86
2024 2178 3.604772 GCTTTAATGCAGGATTAGTCGCG 60.605 47.826 0.00 0.00 0.00 5.87
2025 2179 3.304057 GGCTTTAATGCAGGATTAGTCGC 60.304 47.826 14.56 0.24 34.04 5.19
2026 2180 3.876914 TGGCTTTAATGCAGGATTAGTCG 59.123 43.478 14.56 0.00 34.04 4.18
2038 2192 5.967674 CGAACTGAAATAGCTGGCTTTAATG 59.032 40.000 0.00 0.00 0.00 1.90
2039 2193 5.648092 ACGAACTGAAATAGCTGGCTTTAAT 59.352 36.000 0.00 0.00 0.00 1.40
2040 2194 5.001232 ACGAACTGAAATAGCTGGCTTTAA 58.999 37.500 0.00 0.00 0.00 1.52
2041 2195 4.391830 CACGAACTGAAATAGCTGGCTTTA 59.608 41.667 0.00 0.00 0.00 1.85
2042 2196 3.189287 CACGAACTGAAATAGCTGGCTTT 59.811 43.478 0.00 0.00 0.00 3.51
2045 2199 1.398390 CCACGAACTGAAATAGCTGGC 59.602 52.381 0.00 0.00 0.00 4.85
2046 2200 1.398390 GCCACGAACTGAAATAGCTGG 59.602 52.381 0.00 0.00 0.00 4.85
2047 2201 2.076100 TGCCACGAACTGAAATAGCTG 58.924 47.619 0.00 0.00 0.00 4.24
2048 2202 2.076863 GTGCCACGAACTGAAATAGCT 58.923 47.619 0.00 0.00 0.00 3.32
2049 2203 2.076863 AGTGCCACGAACTGAAATAGC 58.923 47.619 0.00 0.00 0.00 2.97
2050 2204 3.307242 GCTAGTGCCACGAACTGAAATAG 59.693 47.826 0.00 0.00 0.00 1.73
2051 2205 3.259064 GCTAGTGCCACGAACTGAAATA 58.741 45.455 0.00 0.00 0.00 1.40
2052 2206 2.076863 GCTAGTGCCACGAACTGAAAT 58.923 47.619 0.00 0.00 0.00 2.17
2054 2208 0.666274 CGCTAGTGCCACGAACTGAA 60.666 55.000 0.00 0.00 35.36 3.02
2055 2209 1.080772 CGCTAGTGCCACGAACTGA 60.081 57.895 0.00 0.00 35.36 3.41
2056 2210 0.458543 ATCGCTAGTGCCACGAACTG 60.459 55.000 0.00 0.00 39.56 3.16
2057 2211 0.179134 GATCGCTAGTGCCACGAACT 60.179 55.000 0.00 0.00 39.56 3.01
2058 2212 0.457853 TGATCGCTAGTGCCACGAAC 60.458 55.000 0.00 0.00 39.56 3.95
2059 2213 0.179137 CTGATCGCTAGTGCCACGAA 60.179 55.000 0.00 0.00 39.56 3.85
2060 2214 1.433471 CTGATCGCTAGTGCCACGA 59.567 57.895 0.00 0.00 40.53 4.35
2061 2215 2.233654 GCTGATCGCTAGTGCCACG 61.234 63.158 0.00 0.00 35.36 4.94
2062 2216 1.150567 CTGCTGATCGCTAGTGCCAC 61.151 60.000 0.00 0.00 40.11 5.01
2063 2217 1.142531 CTGCTGATCGCTAGTGCCA 59.857 57.895 0.00 0.00 40.11 4.92
2064 2218 1.593750 CCTGCTGATCGCTAGTGCC 60.594 63.158 0.00 0.00 40.11 5.01
2065 2219 0.385751 TACCTGCTGATCGCTAGTGC 59.614 55.000 0.00 0.00 40.11 4.40
2066 2220 1.405463 TGTACCTGCTGATCGCTAGTG 59.595 52.381 10.16 0.00 40.11 2.74
2067 2221 1.763968 TGTACCTGCTGATCGCTAGT 58.236 50.000 10.16 9.43 40.11 2.57
2068 2222 3.055591 CAATGTACCTGCTGATCGCTAG 58.944 50.000 10.16 6.57 40.11 3.42
2069 2223 2.693074 TCAATGTACCTGCTGATCGCTA 59.307 45.455 10.16 0.00 40.11 4.26
2070 2224 1.482182 TCAATGTACCTGCTGATCGCT 59.518 47.619 10.16 0.00 40.11 4.93
2071 2225 1.863454 CTCAATGTACCTGCTGATCGC 59.137 52.381 3.07 3.07 39.77 4.58
2072 2226 3.119291 GTCTCAATGTACCTGCTGATCG 58.881 50.000 0.00 0.00 0.00 3.69
2073 2227 4.099266 AGAGTCTCAATGTACCTGCTGATC 59.901 45.833 1.94 0.00 0.00 2.92
2074 2228 4.029520 AGAGTCTCAATGTACCTGCTGAT 58.970 43.478 1.94 0.00 0.00 2.90
2075 2229 3.435275 AGAGTCTCAATGTACCTGCTGA 58.565 45.455 1.94 0.00 0.00 4.26
2076 2230 3.883830 AGAGTCTCAATGTACCTGCTG 57.116 47.619 1.94 0.00 0.00 4.41
2077 2231 5.658634 TGATAAGAGTCTCAATGTACCTGCT 59.341 40.000 1.94 0.00 0.00 4.24
2078 2232 5.907207 TGATAAGAGTCTCAATGTACCTGC 58.093 41.667 1.94 0.00 0.00 4.85
2079 2233 7.015098 AGGATGATAAGAGTCTCAATGTACCTG 59.985 40.741 1.94 0.00 0.00 4.00
2080 2234 7.015098 CAGGATGATAAGAGTCTCAATGTACCT 59.985 40.741 1.94 0.30 39.69 3.08
2081 2235 7.014711 TCAGGATGATAAGAGTCTCAATGTACC 59.985 40.741 1.94 0.00 42.56 3.34
2082 2236 7.946207 TCAGGATGATAAGAGTCTCAATGTAC 58.054 38.462 1.94 0.00 42.56 2.90
2101 2255 3.558608 TTGGGGGAAAACAATCAGGAT 57.441 42.857 0.00 0.00 0.00 3.24
2103 2257 2.972021 ACTTTGGGGGAAAACAATCAGG 59.028 45.455 0.00 0.00 0.00 3.86
2127 2281 4.731313 AGATTCCCCATATGGAACCTTC 57.269 45.455 24.00 12.35 46.76 3.46
2129 2283 3.140895 CCAAGATTCCCCATATGGAACCT 59.859 47.826 24.00 3.61 46.76 3.50
2131 2285 4.184649 ACCAAGATTCCCCATATGGAAC 57.815 45.455 24.00 9.01 46.76 3.62
2141 2363 5.653769 TCAGAAATCATGAACCAAGATTCCC 59.346 40.000 0.00 0.00 31.85 3.97
2142 2364 6.764308 TCAGAAATCATGAACCAAGATTCC 57.236 37.500 0.00 0.00 31.85 3.01
2157 2379 7.854916 CGGAAGCAAAGATTCTTATCAGAAATC 59.145 37.037 0.00 0.00 42.53 2.17
2166 2388 4.647611 TGGAACGGAAGCAAAGATTCTTA 58.352 39.130 0.00 0.00 0.00 2.10
2171 2393 3.356529 AGATGGAACGGAAGCAAAGAT 57.643 42.857 0.00 0.00 0.00 2.40
2191 2415 8.328758 TGAAGAGAAAATTTAGCAGGATTCCTA 58.671 33.333 4.51 0.00 29.64 2.94
2199 2427 5.409826 ACGAGGTGAAGAGAAAATTTAGCAG 59.590 40.000 0.00 0.00 0.00 4.24
2217 2445 3.217242 GTGTTGATCTGCACGAGGT 57.783 52.632 0.00 0.00 0.00 3.85
2224 2452 1.499056 CTGGTGCGTGTTGATCTGC 59.501 57.895 0.00 0.00 0.00 4.26
2225 2453 1.499056 GCTGGTGCGTGTTGATCTG 59.501 57.895 0.00 0.00 0.00 2.90
2226 2454 1.672356 GGCTGGTGCGTGTTGATCT 60.672 57.895 0.00 0.00 40.82 2.75
2227 2455 1.308069 ATGGCTGGTGCGTGTTGATC 61.308 55.000 0.00 0.00 40.82 2.92
2228 2456 1.303561 ATGGCTGGTGCGTGTTGAT 60.304 52.632 0.00 0.00 40.82 2.57
2229 2457 1.965930 GATGGCTGGTGCGTGTTGA 60.966 57.895 0.00 0.00 40.82 3.18
2230 2458 2.562912 GATGGCTGGTGCGTGTTG 59.437 61.111 0.00 0.00 40.82 3.33
2231 2459 2.672996 GGATGGCTGGTGCGTGTT 60.673 61.111 0.00 0.00 40.82 3.32
2232 2460 3.907260 CTGGATGGCTGGTGCGTGT 62.907 63.158 0.00 0.00 40.82 4.49
2233 2461 3.129502 CTGGATGGCTGGTGCGTG 61.130 66.667 0.00 0.00 40.82 5.34
2234 2462 4.415150 CCTGGATGGCTGGTGCGT 62.415 66.667 0.00 0.00 40.82 5.24
2235 2463 3.626996 TTCCTGGATGGCTGGTGCG 62.627 63.158 0.00 0.00 40.82 5.34
2239 2467 1.684248 CCTTTCTTCCTGGATGGCTGG 60.684 57.143 9.46 5.76 35.26 4.85
2261 2489 2.432628 GTTCAGTGGCGTCTCCCG 60.433 66.667 0.00 0.00 40.40 5.14
2262 2490 1.079750 GAGTTCAGTGGCGTCTCCC 60.080 63.158 0.00 0.00 0.00 4.30
2308 2536 4.069232 TCTGACAGCCGCGGGAAG 62.069 66.667 29.38 13.81 0.00 3.46
2363 2591 0.736325 CTGGACGATGTTGGGACGAC 60.736 60.000 0.00 0.00 0.00 4.34
2429 2657 1.965754 AAGAGATCGTCTGGGCTGGC 61.966 60.000 0.00 0.00 34.84 4.85
2559 2838 4.385405 GCACCTGAGGCTGCTCGT 62.385 66.667 15.65 0.00 30.89 4.18
2606 2885 2.260743 GCCTGCAAAGCCTTCAGC 59.739 61.111 0.00 0.00 44.25 4.26
2607 2886 1.968017 TCGCCTGCAAAGCCTTCAG 60.968 57.895 2.96 0.00 0.00 3.02
2608 2887 2.112928 TCGCCTGCAAAGCCTTCA 59.887 55.556 2.96 0.00 0.00 3.02
2609 2888 2.563427 GTCGCCTGCAAAGCCTTC 59.437 61.111 2.96 0.00 0.00 3.46
2610 2889 3.357079 CGTCGCCTGCAAAGCCTT 61.357 61.111 2.96 0.00 0.00 4.35
2613 2892 4.389576 CACCGTCGCCTGCAAAGC 62.390 66.667 0.00 0.00 0.00 3.51
2614 2893 4.389576 GCACCGTCGCCTGCAAAG 62.390 66.667 7.94 0.00 33.31 2.77
2615 2894 4.927782 AGCACCGTCGCCTGCAAA 62.928 61.111 13.66 0.00 35.73 3.68
2619 2898 3.573772 TTCAGAGCACCGTCGCCTG 62.574 63.158 0.00 0.00 33.84 4.85
2620 2899 3.303135 TTCAGAGCACCGTCGCCT 61.303 61.111 0.00 0.00 0.00 5.52
2662 2941 1.208165 TCCTCCCCTTGGAAGGCTTC 61.208 60.000 18.98 18.98 45.10 3.86
2666 2945 1.076438 AAACTCCTCCCCTTGGAAGG 58.924 55.000 0.00 0.00 46.06 3.46
2667 2946 1.272147 CCAAACTCCTCCCCTTGGAAG 60.272 57.143 0.00 0.00 41.17 3.46
2668 2947 0.777446 CCAAACTCCTCCCCTTGGAA 59.223 55.000 0.00 0.00 41.17 3.53
2669 2948 1.140134 CCCAAACTCCTCCCCTTGGA 61.140 60.000 1.26 0.00 40.72 3.53
2670 2949 1.140134 TCCCAAACTCCTCCCCTTGG 61.140 60.000 0.00 0.00 38.45 3.61
2671 2950 0.329596 CTCCCAAACTCCTCCCCTTG 59.670 60.000 0.00 0.00 0.00 3.61
2672 2951 0.846870 CCTCCCAAACTCCTCCCCTT 60.847 60.000 0.00 0.00 0.00 3.95
2673 2952 1.229984 CCTCCCAAACTCCTCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
2674 2953 2.309504 CCCTCCCAAACTCCTCCCC 61.310 68.421 0.00 0.00 0.00 4.81
2675 2954 2.309504 CCCCTCCCAAACTCCTCCC 61.310 68.421 0.00 0.00 0.00 4.30
2685 2964 4.631740 TCTCACGTGCCCCTCCCA 62.632 66.667 11.67 0.00 0.00 4.37
2694 2973 1.444553 GGTCGAGCCTTCTCACGTG 60.445 63.158 9.94 9.94 39.30 4.49
2695 2974 2.963371 GGTCGAGCCTTCTCACGT 59.037 61.111 2.39 0.00 39.30 4.49
2779 3058 4.159321 TGAGTCTCAGTGACCTGATTCATC 59.841 45.833 0.00 0.00 46.38 2.92
2794 3073 3.162147 AGCAGGTTAGAGTGAGTCTCA 57.838 47.619 0.00 0.00 44.98 3.27
2799 3078 3.677424 GCAGGTAAGCAGGTTAGAGTGAG 60.677 52.174 0.00 0.00 0.00 3.51
2814 3093 6.524734 CAAGATGGTGATAGTATGCAGGTAA 58.475 40.000 0.00 0.00 0.00 2.85
2818 3097 4.383173 TGCAAGATGGTGATAGTATGCAG 58.617 43.478 0.00 0.00 37.61 4.41
2819 3098 4.420522 TGCAAGATGGTGATAGTATGCA 57.579 40.909 0.00 0.00 39.95 3.96
2820 3099 6.820152 TCATATGCAAGATGGTGATAGTATGC 59.180 38.462 11.01 0.00 0.00 3.14
2821 3100 7.279536 GGTCATATGCAAGATGGTGATAGTATG 59.720 40.741 11.01 1.47 0.00 2.39
2822 3101 7.181665 AGGTCATATGCAAGATGGTGATAGTAT 59.818 37.037 11.01 0.00 0.00 2.12
2823 3102 6.498303 AGGTCATATGCAAGATGGTGATAGTA 59.502 38.462 11.01 0.00 0.00 1.82
2824 3103 5.309020 AGGTCATATGCAAGATGGTGATAGT 59.691 40.000 11.01 0.00 0.00 2.12
2825 3104 5.802465 AGGTCATATGCAAGATGGTGATAG 58.198 41.667 11.01 0.00 0.00 2.08
2826 3105 5.830799 AGGTCATATGCAAGATGGTGATA 57.169 39.130 11.01 0.00 0.00 2.15
2827 3106 4.719026 AGGTCATATGCAAGATGGTGAT 57.281 40.909 11.01 0.00 0.00 3.06
2828 3107 4.508551 AAGGTCATATGCAAGATGGTGA 57.491 40.909 11.01 0.00 0.00 4.02
2833 3112 6.381994 ACATGGAAAAAGGTCATATGCAAGAT 59.618 34.615 0.00 0.00 0.00 2.40
2850 3129 9.685276 AGACTGTAATTATTCATCACATGGAAA 57.315 29.630 0.00 0.00 0.00 3.13
2854 3133 7.854422 GTGCAGACTGTAATTATTCATCACATG 59.146 37.037 3.99 0.00 0.00 3.21
2862 3148 9.265901 AGATGTATGTGCAGACTGTAATTATTC 57.734 33.333 3.99 0.00 0.00 1.75
2871 3157 5.683302 CGTTAGTAGATGTATGTGCAGACTG 59.317 44.000 0.00 0.00 0.00 3.51
2877 3163 5.803461 TGAACACGTTAGTAGATGTATGTGC 59.197 40.000 0.00 0.00 0.00 4.57
2881 3167 9.302345 CAAAGATGAACACGTTAGTAGATGTAT 57.698 33.333 0.00 0.00 0.00 2.29
2892 3178 7.221838 CCACATTTTTACAAAGATGAACACGTT 59.778 33.333 11.05 0.00 34.97 3.99
2895 3181 8.419076 AACCACATTTTTACAAAGATGAACAC 57.581 30.769 11.05 0.00 34.97 3.32
2896 3182 9.442047 AAAACCACATTTTTACAAAGATGAACA 57.558 25.926 11.05 0.00 37.18 3.18
2945 3234 2.125912 GGCGTCTCTGATGCACGT 60.126 61.111 12.87 0.00 45.37 4.49
2978 3267 1.595382 GTCTGTGCTCCACGCTGTT 60.595 57.895 0.00 0.00 37.14 3.16
3010 3299 1.026718 CCGAGGAACCCACATTCTGC 61.027 60.000 0.00 0.00 0.00 4.26
3058 3347 5.751243 CATGTCATGTCATGTCATGTCAT 57.249 39.130 29.67 26.71 46.63 3.06
3063 3352 4.568152 CATGCATGTCATGTCATGTCAT 57.432 40.909 26.51 24.68 45.79 3.06
3123 3413 0.656259 CTCCGATCGTAGCGACAGAA 59.344 55.000 15.09 0.00 39.18 3.02
3129 3419 1.409412 CCATTTCTCCGATCGTAGCG 58.591 55.000 15.09 0.00 0.00 4.26
3149 3439 2.952310 GACCAATTAGAGGGCCATGTTC 59.048 50.000 6.18 0.00 0.00 3.18
3150 3440 2.311542 TGACCAATTAGAGGGCCATGTT 59.688 45.455 6.18 0.00 31.11 2.71
3151 3441 1.922447 TGACCAATTAGAGGGCCATGT 59.078 47.619 6.18 0.00 31.11 3.21
3152 3442 2.092212 AGTGACCAATTAGAGGGCCATG 60.092 50.000 6.18 0.00 31.11 3.66
3153 3443 2.173569 GAGTGACCAATTAGAGGGCCAT 59.826 50.000 6.18 0.00 31.11 4.40
3163 3453 3.801698 CATCTGGATCGAGTGACCAATT 58.198 45.455 4.53 0.00 33.14 2.32
3164 3454 2.484417 GCATCTGGATCGAGTGACCAAT 60.484 50.000 4.53 0.00 33.14 3.16
3194 3484 1.186917 TGCCAACAGCCCCAGAAATG 61.187 55.000 0.00 0.00 42.71 2.32
3195 3485 0.901580 CTGCCAACAGCCCCAGAAAT 60.902 55.000 0.00 0.00 42.71 2.17
3196 3486 1.531365 CTGCCAACAGCCCCAGAAA 60.531 57.895 0.00 0.00 42.71 2.52
3197 3487 2.115910 CTGCCAACAGCCCCAGAA 59.884 61.111 0.00 0.00 42.71 3.02
3198 3488 3.970410 CCTGCCAACAGCCCCAGA 61.970 66.667 0.00 0.00 43.02 3.86
3202 3492 4.666253 TGAGCCTGCCAACAGCCC 62.666 66.667 0.00 0.00 43.02 5.19
3203 3493 3.060615 CTGAGCCTGCCAACAGCC 61.061 66.667 0.00 0.00 43.02 4.85
3204 3494 3.745803 GCTGAGCCTGCCAACAGC 61.746 66.667 14.25 14.25 46.25 4.40
3208 3498 1.676635 GATGTGCTGAGCCTGCCAA 60.677 57.895 0.23 0.00 0.00 4.52
3257 3553 2.734591 GCCACGGAGCGATCCATA 59.265 61.111 21.44 0.00 0.00 2.74
3346 3642 2.978298 TACGCCAGGAGATCCCCGAG 62.978 65.000 0.00 0.00 36.42 4.63
3347 3643 2.978298 CTACGCCAGGAGATCCCCGA 62.978 65.000 0.00 0.00 36.42 5.14
3348 3644 2.520982 TACGCCAGGAGATCCCCG 60.521 66.667 0.00 0.00 36.42 5.73
3376 3672 2.624838 CAGTGGAATCATAATGGGTGCC 59.375 50.000 0.00 0.00 0.00 5.01
3377 3673 2.035066 GCAGTGGAATCATAATGGGTGC 59.965 50.000 0.00 0.00 0.00 5.01
3378 3674 3.289836 TGCAGTGGAATCATAATGGGTG 58.710 45.455 0.00 0.00 0.00 4.61
3379 3675 3.202818 TCTGCAGTGGAATCATAATGGGT 59.797 43.478 14.67 0.00 0.00 4.51
3380 3676 3.819337 CTCTGCAGTGGAATCATAATGGG 59.181 47.826 14.67 0.00 0.00 4.00
3381 3677 4.458397 ACTCTGCAGTGGAATCATAATGG 58.542 43.478 19.27 0.00 0.00 3.16
3386 3690 4.080695 ACACATACTCTGCAGTGGAATCAT 60.081 41.667 19.27 0.58 36.35 2.45
3393 3697 6.199719 CACATACATACACATACTCTGCAGTG 59.800 42.308 14.67 14.35 37.95 3.66
3418 3722 0.437295 ACATTTACACGCTCGTTCGC 59.563 50.000 0.00 0.00 0.00 4.70
3424 3728 6.194463 TCATACGTACTACATTTACACGCTC 58.806 40.000 0.00 0.00 36.11 5.03
3437 3741 7.002250 AGGCTAGACTGTATCATACGTACTA 57.998 40.000 0.00 0.00 0.00 1.82
3438 3742 5.867330 AGGCTAGACTGTATCATACGTACT 58.133 41.667 0.00 0.00 0.00 2.73
3450 3754 3.006323 CAGACTGTCAAAGGCTAGACTGT 59.994 47.826 23.09 23.09 45.35 3.55
3451 3755 3.256879 TCAGACTGTCAAAGGCTAGACTG 59.743 47.826 18.70 18.70 45.35 3.51
3492 3797 2.036475 CCATGGAACTAGGTCGATCAGG 59.964 54.545 5.56 0.00 0.00 3.86
3494 3799 2.039418 CCCATGGAACTAGGTCGATCA 58.961 52.381 15.22 0.00 0.00 2.92
3495 3800 1.270358 GCCCATGGAACTAGGTCGATC 60.270 57.143 15.22 0.00 0.00 3.69
3519 3824 4.873129 CGTGATCTGACCGGGCGG 62.873 72.222 11.02 11.02 42.03 6.13
3520 3825 2.829043 TTTCGTGATCTGACCGGGCG 62.829 60.000 6.32 0.00 0.00 6.13
3521 3826 0.462047 ATTTCGTGATCTGACCGGGC 60.462 55.000 6.32 1.57 0.00 6.13
3522 3827 2.024176 AATTTCGTGATCTGACCGGG 57.976 50.000 6.32 0.00 0.00 5.73
3523 3828 3.000041 TGAAATTTCGTGATCTGACCGG 59.000 45.455 13.34 0.00 0.00 5.28
3524 3829 4.661993 TTGAAATTTCGTGATCTGACCG 57.338 40.909 13.34 0.00 0.00 4.79
3525 3830 5.123820 TGGATTGAAATTTCGTGATCTGACC 59.876 40.000 19.62 11.51 0.00 4.02
3526 3831 6.092670 TCTGGATTGAAATTTCGTGATCTGAC 59.907 38.462 19.62 10.27 0.00 3.51
3527 3832 6.092670 GTCTGGATTGAAATTTCGTGATCTGA 59.907 38.462 19.62 16.43 0.00 3.27
3528 3833 6.253746 GTCTGGATTGAAATTTCGTGATCTG 58.746 40.000 19.62 15.22 0.00 2.90
3529 3834 5.063944 CGTCTGGATTGAAATTTCGTGATCT 59.936 40.000 19.62 2.86 0.00 2.75
3530 3835 5.258622 CGTCTGGATTGAAATTTCGTGATC 58.741 41.667 13.34 14.53 0.00 2.92
3531 3836 4.094887 CCGTCTGGATTGAAATTTCGTGAT 59.905 41.667 13.34 7.35 37.49 3.06
3532 3837 3.435327 CCGTCTGGATTGAAATTTCGTGA 59.565 43.478 13.34 2.80 37.49 4.35
3533 3838 3.435327 TCCGTCTGGATTGAAATTTCGTG 59.565 43.478 13.34 0.75 40.17 4.35
3534 3839 3.670625 TCCGTCTGGATTGAAATTTCGT 58.329 40.909 13.34 4.76 40.17 3.85
3546 3851 0.669318 GTTTGATGCGTCCGTCTGGA 60.669 55.000 2.83 0.00 43.88 3.86
3547 3852 1.787847 GTTTGATGCGTCCGTCTGG 59.212 57.895 2.83 0.00 0.00 3.86
3548 3853 1.006825 TCGTTTGATGCGTCCGTCTG 61.007 55.000 2.83 0.00 0.00 3.51
3549 3854 0.732880 CTCGTTTGATGCGTCCGTCT 60.733 55.000 2.83 0.00 0.00 4.18
3550 3855 1.702299 CTCGTTTGATGCGTCCGTC 59.298 57.895 2.83 0.00 0.00 4.79
3551 3856 2.380410 GCTCGTTTGATGCGTCCGT 61.380 57.895 2.83 0.00 0.00 4.69
3552 3857 2.395690 GCTCGTTTGATGCGTCCG 59.604 61.111 2.83 0.00 0.00 4.79
3553 3858 2.750888 GGGCTCGTTTGATGCGTCC 61.751 63.158 2.83 0.00 0.00 4.79
3554 3859 1.970917 CTGGGCTCGTTTGATGCGTC 61.971 60.000 0.00 0.00 0.00 5.19
3555 3860 2.031919 TGGGCTCGTTTGATGCGT 59.968 55.556 0.00 0.00 0.00 5.24
3556 3861 1.741401 TCTGGGCTCGTTTGATGCG 60.741 57.895 0.00 0.00 0.00 4.73
3557 3862 1.796796 GTCTGGGCTCGTTTGATGC 59.203 57.895 0.00 0.00 0.00 3.91
3558 3863 0.670546 ACGTCTGGGCTCGTTTGATG 60.671 55.000 0.00 0.00 36.93 3.07
3559 3864 0.034896 AACGTCTGGGCTCGTTTGAT 59.965 50.000 0.00 0.00 45.78 2.57
3560 3865 1.444250 AACGTCTGGGCTCGTTTGA 59.556 52.632 0.00 0.00 45.78 2.69
3561 3866 4.043168 AACGTCTGGGCTCGTTTG 57.957 55.556 0.00 0.00 45.78 2.93
3564 3869 4.052229 CCGAACGTCTGGGCTCGT 62.052 66.667 4.57 0.00 42.12 4.18
3565 3870 4.796231 CCCGAACGTCTGGGCTCG 62.796 72.222 11.72 5.18 38.90 5.03
3570 3875 2.432628 GTCAGCCCGAACGTCTGG 60.433 66.667 0.00 0.00 0.00 3.86
3582 3887 3.255888 TGATATGATAGGTGTCGGTCAGC 59.744 47.826 0.00 0.00 43.96 4.26
3587 3892 8.684386 ATATAGACTGATATGATAGGTGTCGG 57.316 38.462 0.00 0.00 0.00 4.79
3595 3900 7.665974 CCGCCCTGTATATAGACTGATATGATA 59.334 40.741 6.01 0.00 0.00 2.15
3596 3901 6.491745 CCGCCCTGTATATAGACTGATATGAT 59.508 42.308 6.01 0.00 0.00 2.45
3604 3909 4.223032 CCATTTCCGCCCTGTATATAGACT 59.777 45.833 0.00 0.00 0.00 3.24
3605 3910 4.222145 TCCATTTCCGCCCTGTATATAGAC 59.778 45.833 0.00 0.00 0.00 2.59
3606 3911 4.422057 TCCATTTCCGCCCTGTATATAGA 58.578 43.478 0.00 0.00 0.00 1.98
3608 3913 4.020573 CACTCCATTTCCGCCCTGTATATA 60.021 45.833 0.00 0.00 0.00 0.86
3609 3914 2.979678 ACTCCATTTCCGCCCTGTATAT 59.020 45.455 0.00 0.00 0.00 0.86
3610 3915 2.104111 CACTCCATTTCCGCCCTGTATA 59.896 50.000 0.00 0.00 0.00 1.47
3612 3917 0.251916 CACTCCATTTCCGCCCTGTA 59.748 55.000 0.00 0.00 0.00 2.74
3613 3918 1.002134 CACTCCATTTCCGCCCTGT 60.002 57.895 0.00 0.00 0.00 4.00
3614 3919 1.750399 CCACTCCATTTCCGCCCTG 60.750 63.158 0.00 0.00 0.00 4.45
3615 3920 2.677228 CCACTCCATTTCCGCCCT 59.323 61.111 0.00 0.00 0.00 5.19
3623 3929 2.765969 CACCCAGGCCACTCCATT 59.234 61.111 5.01 0.00 37.29 3.16
3690 3996 6.438741 TCTTTCAGATGAGATACTTGTGAGGT 59.561 38.462 0.00 0.00 30.32 3.85
3693 3999 6.351371 GGGTCTTTCAGATGAGATACTTGTGA 60.351 42.308 0.00 0.00 0.00 3.58
3704 4011 3.618997 GCGGTTTAGGGTCTTTCAGATGA 60.619 47.826 0.00 0.00 0.00 2.92
3711 4019 1.418637 TGACTGCGGTTTAGGGTCTTT 59.581 47.619 0.00 0.00 0.00 2.52
3714 4022 2.109425 ATTGACTGCGGTTTAGGGTC 57.891 50.000 0.00 0.00 0.00 4.46
3734 4042 1.420138 GGGGAGTGAAGTGGAGTTTGA 59.580 52.381 0.00 0.00 0.00 2.69
3736 4044 1.700186 GAGGGGAGTGAAGTGGAGTTT 59.300 52.381 0.00 0.00 0.00 2.66
3764 4073 2.098117 CGGAGTGGATCAAAAATGGAGC 59.902 50.000 0.00 0.00 0.00 4.70
3770 4079 2.546368 CACGTTCGGAGTGGATCAAAAA 59.454 45.455 0.00 0.00 36.06 1.94
3837 4147 4.813526 CCAGTCGTCGTCGGAGCG 62.814 72.222 1.55 0.00 37.69 5.03
4064 4388 2.448582 GGTGGTGGTGGTGGACTGA 61.449 63.158 0.00 0.00 0.00 3.41
4065 4389 2.113139 GGTGGTGGTGGTGGACTG 59.887 66.667 0.00 0.00 0.00 3.51
4066 4390 2.367648 TGGTGGTGGTGGTGGACT 60.368 61.111 0.00 0.00 0.00 3.85
4067 4391 2.203294 GTGGTGGTGGTGGTGGAC 60.203 66.667 0.00 0.00 0.00 4.02
4068 4392 3.494254 GGTGGTGGTGGTGGTGGA 61.494 66.667 0.00 0.00 0.00 4.02
4069 4393 4.596585 GGGTGGTGGTGGTGGTGG 62.597 72.222 0.00 0.00 0.00 4.61
4070 4394 3.491598 GAGGGTGGTGGTGGTGGTG 62.492 68.421 0.00 0.00 0.00 4.17
4071 4395 3.175710 GAGGGTGGTGGTGGTGGT 61.176 66.667 0.00 0.00 0.00 4.16
4072 4396 2.854032 AGAGGGTGGTGGTGGTGG 60.854 66.667 0.00 0.00 0.00 4.61
4073 4397 2.431683 CAGAGGGTGGTGGTGGTG 59.568 66.667 0.00 0.00 0.00 4.17
4074 4398 3.570212 GCAGAGGGTGGTGGTGGT 61.570 66.667 0.00 0.00 0.00 4.16
4164 4490 2.437359 GCTGCTTGTGCCTCGGAT 60.437 61.111 0.00 0.00 38.71 4.18
4185 4525 3.013932 CTGCCCTCTCCCTTGCCT 61.014 66.667 0.00 0.00 0.00 4.75
4189 4529 2.060980 CGTAGCTGCCCTCTCCCTT 61.061 63.158 0.00 0.00 0.00 3.95
4222 4562 4.520846 GGGATCAAACAGCGCGCG 62.521 66.667 28.44 28.44 0.00 6.86
4229 4575 1.079405 GCGACCTCGGGATCAAACA 60.079 57.895 0.00 0.00 40.23 2.83
4261 4608 0.754957 CGTGAGAGAGGGCAGAGGAT 60.755 60.000 0.00 0.00 0.00 3.24
4262 4609 1.379176 CGTGAGAGAGGGCAGAGGA 60.379 63.158 0.00 0.00 0.00 3.71
4264 4611 1.806568 GACGTGAGAGAGGGCAGAG 59.193 63.158 0.00 0.00 0.00 3.35
4265 4612 2.041115 CGACGTGAGAGAGGGCAGA 61.041 63.158 0.00 0.00 0.00 4.26
4267 4614 3.062466 CCGACGTGAGAGAGGGCA 61.062 66.667 0.00 0.00 0.00 5.36
4268 4615 4.500116 GCCGACGTGAGAGAGGGC 62.500 72.222 0.00 0.00 0.00 5.19
4270 4617 2.585170 CTTCGCCGACGTGAGAGAGG 62.585 65.000 0.00 0.00 41.18 3.69
4274 4621 2.559840 GTCTTCGCCGACGTGAGA 59.440 61.111 0.00 0.00 41.18 3.27
4281 4628 2.813474 CGCATTGGTCTTCGCCGA 60.813 61.111 0.00 0.00 0.00 5.54
4285 4632 1.416049 CGTCACGCATTGGTCTTCG 59.584 57.895 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.