Multiple sequence alignment - TraesCS6B01G329600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G329600 chr6B 100.000 1400 0 0 1 1400 578949665 578951064 0.000000e+00 2586.0
1 TraesCS6B01G329600 chr6B 100.000 543 0 0 1680 2222 578951344 578951886 0.000000e+00 1003.0
2 TraesCS6B01G329600 chr6B 85.876 354 31 14 777 1113 579094157 579094508 2.100000e-95 359.0
3 TraesCS6B01G329600 chr6B 88.235 119 5 6 778 890 579102536 579102651 1.380000e-27 134.0
4 TraesCS6B01G329600 chr6A 86.970 990 76 24 1 966 532897250 532898210 0.000000e+00 1064.0
5 TraesCS6B01G329600 chr6A 92.760 442 30 2 1725 2165 532898670 532899110 2.410000e-179 638.0
6 TraesCS6B01G329600 chr6A 92.435 423 21 3 951 1366 532898250 532898668 5.280000e-166 593.0
7 TraesCS6B01G329600 chr6A 86.036 444 49 8 777 1209 533253547 533253988 4.320000e-127 464.0
8 TraesCS6B01G329600 chr6A 96.667 60 1 1 2164 2222 532899349 532899408 5.050000e-17 99.0
9 TraesCS6B01G329600 chr6A 86.885 61 5 2 2045 2105 533256023 533256080 5.120000e-07 65.8
10 TraesCS6B01G329600 chr6D 88.782 731 36 16 145 846 387766941 387767654 0.000000e+00 854.0
11 TraesCS6B01G329600 chr6D 92.126 508 25 4 870 1366 387780686 387781189 0.000000e+00 702.0
12 TraesCS6B01G329600 chr6D 88.780 410 29 8 1820 2222 387782322 387782721 9.220000e-134 486.0
13 TraesCS6B01G329600 chr6D 87.719 342 28 7 777 1113 387882659 387882991 9.620000e-104 387.0
14 TraesCS6B01G329600 chr6D 95.679 162 6 1 1 161 387764010 387764171 2.190000e-65 259.0
15 TraesCS6B01G329600 chr2A 93.182 44 3 0 1997 2040 535152498 535152455 5.120000e-07 65.8
16 TraesCS6B01G329600 chr7A 100.000 31 0 0 2001 2031 7922115 7922145 8.570000e-05 58.4
17 TraesCS6B01G329600 chr3A 94.737 38 1 1 1996 2032 743385541 743385504 8.570000e-05 58.4
18 TraesCS6B01G329600 chr2D 94.595 37 1 1 1997 2032 67220829 67220865 3.080000e-04 56.5
19 TraesCS6B01G329600 chr7B 100.000 29 0 0 2004 2032 353634250 353634222 1.000000e-03 54.7
20 TraesCS6B01G329600 chr5D 100.000 29 0 0 2004 2032 499238435 499238407 1.000000e-03 54.7
21 TraesCS6B01G329600 chr1B 96.875 32 1 0 2000 2031 423591461 423591430 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G329600 chr6B 578949665 578951886 2221 False 1794.5 2586 100.0000 1 2222 2 chr6B.!!$F3 2221
1 TraesCS6B01G329600 chr6A 532897250 532899408 2158 False 598.5 1064 92.2080 1 2222 4 chr6A.!!$F1 2221
2 TraesCS6B01G329600 chr6A 533253547 533256080 2533 False 264.9 464 86.4605 777 2105 2 chr6A.!!$F2 1328
3 TraesCS6B01G329600 chr6D 387780686 387782721 2035 False 594.0 702 90.4530 870 2222 2 chr6D.!!$F3 1352
4 TraesCS6B01G329600 chr6D 387764010 387767654 3644 False 556.5 854 92.2305 1 846 2 chr6D.!!$F2 845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 3253 1.154225 GACGCAAAGCATTGACCGG 60.154 57.895 5.73 0.0 38.94 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 7988 2.039418 TGCTACCAATGATCGTAGGCT 58.961 47.619 7.38 0.0 33.9 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.052481 TCTCATGCTGGAATTTCGTAGATG 58.948 41.667 4.14 0.00 35.04 2.90
167 2955 1.541310 CGTGAGGTAGGGCTGTGGAA 61.541 60.000 0.00 0.00 0.00 3.53
179 2967 8.204836 GGTAGGGCTGTGGAATAATACATATAG 58.795 40.741 0.00 0.00 0.00 1.31
224 3012 5.068234 ACTAAGCACTACGCATAACAAGA 57.932 39.130 0.00 0.00 46.13 3.02
242 3030 7.409465 AACAAGAGATCGTAAGTTTTCAGTC 57.591 36.000 0.00 0.00 39.48 3.51
243 3031 5.927115 ACAAGAGATCGTAAGTTTTCAGTCC 59.073 40.000 0.00 0.00 39.48 3.85
245 3033 6.287589 AGAGATCGTAAGTTTTCAGTCCAT 57.712 37.500 0.00 0.00 39.48 3.41
246 3034 6.102663 AGAGATCGTAAGTTTTCAGTCCATG 58.897 40.000 0.00 0.00 39.48 3.66
247 3035 4.631813 AGATCGTAAGTTTTCAGTCCATGC 59.368 41.667 0.00 0.00 39.48 4.06
248 3036 3.071479 TCGTAAGTTTTCAGTCCATGCC 58.929 45.455 0.00 0.00 39.48 4.40
249 3037 2.811431 CGTAAGTTTTCAGTCCATGCCA 59.189 45.455 0.00 0.00 0.00 4.92
250 3038 3.252215 CGTAAGTTTTCAGTCCATGCCAA 59.748 43.478 0.00 0.00 0.00 4.52
251 3039 4.261405 CGTAAGTTTTCAGTCCATGCCAAA 60.261 41.667 0.00 0.00 0.00 3.28
253 3041 4.751767 AGTTTTCAGTCCATGCCAAAAA 57.248 36.364 0.00 0.00 0.00 1.94
293 3081 3.996921 AGATTGCCATGACTCTGACTT 57.003 42.857 0.00 0.00 0.00 3.01
296 3084 3.708403 TTGCCATGACTCTGACTTGAT 57.292 42.857 0.00 0.00 0.00 2.57
297 3085 2.981898 TGCCATGACTCTGACTTGATG 58.018 47.619 0.00 0.00 0.00 3.07
314 3102 9.734620 TGACTTGATGTCTAAACAAAAATTGAG 57.265 29.630 0.12 0.00 45.54 3.02
338 3126 2.220133 CGAAATTCTGACCAACGAACGT 59.780 45.455 0.00 0.00 0.00 3.99
341 3129 1.563111 TTCTGACCAACGAACGTCAC 58.437 50.000 0.00 0.00 35.25 3.67
408 3200 7.277760 GGAAACCCGAGATTTTGAATATTTTGG 59.722 37.037 0.00 0.00 0.00 3.28
458 3251 1.797537 GCGACGCAAAGCATTGACC 60.798 57.895 16.42 0.00 38.94 4.02
459 3252 1.509787 CGACGCAAAGCATTGACCG 60.510 57.895 5.73 3.04 38.94 4.79
460 3253 1.154225 GACGCAAAGCATTGACCGG 60.154 57.895 5.73 0.00 38.94 5.28
461 3254 2.179018 CGCAAAGCATTGACCGGG 59.821 61.111 6.32 0.00 38.94 5.73
500 3311 2.548280 CCATGCATGCAAACTGAAACCA 60.548 45.455 26.68 0.00 0.00 3.67
695 3517 5.690364 GCCCAAAAGCTCCCTACATAATACT 60.690 44.000 0.00 0.00 0.00 2.12
701 3527 7.684937 AAGCTCCCTACATAATACTAGTACG 57.315 40.000 4.31 0.00 0.00 3.67
702 3528 6.777782 AGCTCCCTACATAATACTAGTACGT 58.222 40.000 4.31 3.32 0.00 3.57
703 3529 7.911651 AGCTCCCTACATAATACTAGTACGTA 58.088 38.462 4.31 1.19 0.00 3.57
704 3530 7.821846 AGCTCCCTACATAATACTAGTACGTAC 59.178 40.741 18.10 18.10 0.00 3.67
705 3531 7.821846 GCTCCCTACATAATACTAGTACGTACT 59.178 40.741 29.62 29.62 40.24 2.73
743 3569 1.589320 GTCGCACAAAACGTCACTGTA 59.411 47.619 0.00 0.00 0.00 2.74
762 3602 4.249661 TGTACATGCATTCGCTGTAAAGA 58.750 39.130 0.00 0.00 39.64 2.52
774 3616 3.368531 CGCTGTAAAGATCCTATAGGGCC 60.369 52.174 18.97 10.59 35.41 5.80
775 3617 3.368531 GCTGTAAAGATCCTATAGGGCCG 60.369 52.174 18.97 0.00 35.41 6.13
865 3708 4.450861 CCGAGGAAGGCCCCCTATATATAT 60.451 50.000 13.80 0.00 33.36 0.86
866 3709 5.222484 CCGAGGAAGGCCCCCTATATATATA 60.222 48.000 13.80 2.49 33.36 0.86
867 3710 6.320518 CGAGGAAGGCCCCCTATATATATAA 58.679 44.000 13.80 0.00 33.36 0.98
868 3711 6.210984 CGAGGAAGGCCCCCTATATATATAAC 59.789 46.154 13.80 0.00 33.36 1.89
1062 3962 1.296715 GGTCATGGTGTTCTCGGCT 59.703 57.895 0.00 0.00 0.00 5.52
1284 4650 2.005971 GCCAAGAACTGGGTAGTACG 57.994 55.000 0.00 0.00 46.54 3.67
1285 4651 1.547372 GCCAAGAACTGGGTAGTACGA 59.453 52.381 0.00 0.00 46.54 3.43
1292 4658 6.105397 AGAACTGGGTAGTACGATTTTTGA 57.895 37.500 0.00 0.00 35.69 2.69
1388 4828 9.558396 TTTAAATTTACTGAAACTTCGTAGGGA 57.442 29.630 0.00 0.00 0.00 4.20
1389 4829 9.558396 TTAAATTTACTGAAACTTCGTAGGGAA 57.442 29.630 0.00 0.00 0.00 3.97
1390 4830 8.454570 AAATTTACTGAAACTTCGTAGGGAAA 57.545 30.769 0.00 0.00 33.34 3.13
1391 4831 8.631480 AATTTACTGAAACTTCGTAGGGAAAT 57.369 30.769 0.00 0.00 33.34 2.17
1392 4832 7.429636 TTTACTGAAACTTCGTAGGGAAATG 57.570 36.000 0.00 0.00 33.34 2.32
1393 4833 4.969484 ACTGAAACTTCGTAGGGAAATGT 58.031 39.130 0.00 0.00 33.34 2.71
1394 4834 6.105397 ACTGAAACTTCGTAGGGAAATGTA 57.895 37.500 0.00 0.00 33.34 2.29
1395 4835 6.708285 ACTGAAACTTCGTAGGGAAATGTAT 58.292 36.000 0.00 0.00 33.34 2.29
1396 4836 7.844009 ACTGAAACTTCGTAGGGAAATGTATA 58.156 34.615 0.00 0.00 33.34 1.47
1397 4837 8.316214 ACTGAAACTTCGTAGGGAAATGTATAA 58.684 33.333 0.00 0.00 33.34 0.98
1398 4838 9.326413 CTGAAACTTCGTAGGGAAATGTATAAT 57.674 33.333 0.00 0.00 33.34 1.28
1399 4839 9.675464 TGAAACTTCGTAGGGAAATGTATAATT 57.325 29.630 0.00 0.00 33.34 1.40
1700 5140 3.993920 GTAGTGGTTTTAGTTCCCGACA 58.006 45.455 0.00 0.00 0.00 4.35
1701 5141 2.842457 AGTGGTTTTAGTTCCCGACAC 58.158 47.619 0.00 0.00 0.00 3.67
1702 5142 2.436911 AGTGGTTTTAGTTCCCGACACT 59.563 45.455 0.00 0.00 33.51 3.55
1703 5143 3.118149 AGTGGTTTTAGTTCCCGACACTT 60.118 43.478 0.00 0.00 34.59 3.16
1704 5144 4.101430 AGTGGTTTTAGTTCCCGACACTTA 59.899 41.667 0.00 0.00 34.59 2.24
1705 5145 4.999311 GTGGTTTTAGTTCCCGACACTTAT 59.001 41.667 0.00 0.00 0.00 1.73
1706 5146 5.471116 GTGGTTTTAGTTCCCGACACTTATT 59.529 40.000 0.00 0.00 0.00 1.40
1707 5147 6.016860 GTGGTTTTAGTTCCCGACACTTATTT 60.017 38.462 0.00 0.00 0.00 1.40
1708 5148 6.546772 TGGTTTTAGTTCCCGACACTTATTTT 59.453 34.615 0.00 0.00 0.00 1.82
1709 5149 7.068470 TGGTTTTAGTTCCCGACACTTATTTTT 59.932 33.333 0.00 0.00 0.00 1.94
1710 5150 7.380333 GGTTTTAGTTCCCGACACTTATTTTTG 59.620 37.037 0.00 0.00 0.00 2.44
1711 5151 7.804843 TTTAGTTCCCGACACTTATTTTTGA 57.195 32.000 0.00 0.00 0.00 2.69
1712 5152 7.804843 TTAGTTCCCGACACTTATTTTTGAA 57.195 32.000 0.00 0.00 0.00 2.69
1713 5153 6.894339 AGTTCCCGACACTTATTTTTGAAT 57.106 33.333 0.00 0.00 0.00 2.57
1714 5154 6.677913 AGTTCCCGACACTTATTTTTGAATG 58.322 36.000 0.00 0.00 0.00 2.67
1715 5155 5.637006 TCCCGACACTTATTTTTGAATGG 57.363 39.130 0.00 0.00 0.00 3.16
1716 5156 5.317808 TCCCGACACTTATTTTTGAATGGA 58.682 37.500 0.00 0.00 0.00 3.41
1717 5157 5.414454 TCCCGACACTTATTTTTGAATGGAG 59.586 40.000 0.00 0.00 0.00 3.86
1718 5158 5.393027 CCCGACACTTATTTTTGAATGGAGG 60.393 44.000 0.00 0.00 0.00 4.30
1719 5159 5.393027 CCGACACTTATTTTTGAATGGAGGG 60.393 44.000 0.00 0.00 0.00 4.30
1720 5160 5.414454 CGACACTTATTTTTGAATGGAGGGA 59.586 40.000 0.00 0.00 0.00 4.20
1721 5161 6.403636 CGACACTTATTTTTGAATGGAGGGAG 60.404 42.308 0.00 0.00 0.00 4.30
1722 5162 6.314917 ACACTTATTTTTGAATGGAGGGAGT 58.685 36.000 0.00 0.00 0.00 3.85
1723 5163 7.466804 ACACTTATTTTTGAATGGAGGGAGTA 58.533 34.615 0.00 0.00 0.00 2.59
1728 5168 9.540538 TTATTTTTGAATGGAGGGAGTATTTGA 57.459 29.630 0.00 0.00 0.00 2.69
1773 5213 1.115326 AGGCCCCTTGTTGAAAGTGC 61.115 55.000 0.00 0.00 0.00 4.40
1784 5224 5.235850 TGTTGAAAGTGCACCCTCTATAA 57.764 39.130 14.63 0.00 0.00 0.98
1870 6350 7.764443 AGTTATGTACTTCTATGTGCGTTTGAT 59.236 33.333 0.00 0.00 31.29 2.57
1944 7503 3.056322 GCTGAATTGCCATTTCTCCAGTT 60.056 43.478 1.51 0.00 0.00 3.16
1974 7533 2.297701 TGACTTCAGTTCAAGTTGGCC 58.702 47.619 2.34 0.00 36.71 5.36
2022 7581 9.829507 TTCAAATTTGAACTAAAACCATGACAT 57.170 25.926 26.01 0.00 41.88 3.06
2032 7591 9.500785 AACTAAAACCATGACATTTATTTTGGG 57.499 29.630 0.00 1.57 0.00 4.12
2120 7680 6.436843 ACCGTAAATTGACTTGATGGATTC 57.563 37.500 0.00 0.00 0.00 2.52
2132 7692 4.014569 TGATGGATTCGGAAGTCAACAA 57.985 40.909 0.00 0.00 0.00 2.83
2136 7696 5.782893 TGGATTCGGAAGTCAACAAAAAT 57.217 34.783 0.00 0.00 0.00 1.82
2140 7700 6.363357 GGATTCGGAAGTCAACAAAAATTCAG 59.637 38.462 0.00 0.00 0.00 3.02
2187 7988 2.264005 AACAAATCGCCACCTGTACA 57.736 45.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.045872 TGAGATTTGACATACTGCTGATCG 58.954 41.667 0.00 0.00 0.00 3.69
21 22 5.392272 CGAAATTCCAGCATGAGATTTGACA 60.392 40.000 0.00 0.00 39.69 3.58
51 52 0.469144 TTGGAAGTTGGACTTGGGGC 60.469 55.000 0.00 0.00 38.80 5.80
133 135 1.659098 CTCACGCGGTAAGACATTTCC 59.341 52.381 12.47 0.00 0.00 3.13
224 3012 4.631813 GCATGGACTGAAAACTTACGATCT 59.368 41.667 0.00 0.00 0.00 2.75
253 3041 4.768583 TCTTCCAACAAAATGCTGCTTTT 58.231 34.783 7.60 7.60 0.00 2.27
254 3042 4.405116 TCTTCCAACAAAATGCTGCTTT 57.595 36.364 0.00 0.00 0.00 3.51
255 3043 4.612264 ATCTTCCAACAAAATGCTGCTT 57.388 36.364 0.00 0.00 0.00 3.91
256 3044 4.312443 CAATCTTCCAACAAAATGCTGCT 58.688 39.130 0.00 0.00 0.00 4.24
259 3047 3.071312 TGGCAATCTTCCAACAAAATGCT 59.929 39.130 0.00 0.00 33.29 3.79
267 3055 3.128242 CAGAGTCATGGCAATCTTCCAAC 59.872 47.826 0.00 0.00 37.13 3.77
293 3081 6.636447 CGTGCTCAATTTTTGTTTAGACATCA 59.364 34.615 0.00 0.00 35.29 3.07
296 3084 6.125327 TCGTGCTCAATTTTTGTTTAGACA 57.875 33.333 0.00 0.00 0.00 3.41
297 3085 7.444558 TTTCGTGCTCAATTTTTGTTTAGAC 57.555 32.000 0.00 0.00 0.00 2.59
314 3102 1.529438 TCGTTGGTCAGAATTTCGTGC 59.471 47.619 0.00 0.00 0.00 5.34
338 3126 1.337167 CGTGCACTCTCATTCCAGTGA 60.337 52.381 16.19 0.00 42.37 3.41
341 3129 2.164422 TCTACGTGCACTCTCATTCCAG 59.836 50.000 16.19 0.00 0.00 3.86
408 3200 0.738412 GGACAACATGCTTGCATGGC 60.738 55.000 30.86 19.62 36.91 4.40
427 3220 2.473173 CGTCGCATGCGCTTTATTG 58.527 52.632 34.45 14.23 39.59 1.90
458 3251 0.732571 ACGCACAAATAATCTGCCCG 59.267 50.000 0.00 0.00 0.00 6.13
459 3252 1.065551 GGACGCACAAATAATCTGCCC 59.934 52.381 0.00 0.00 0.00 5.36
460 3253 1.065551 GGGACGCACAAATAATCTGCC 59.934 52.381 0.00 0.00 0.00 4.85
461 3254 1.742831 TGGGACGCACAAATAATCTGC 59.257 47.619 0.00 0.00 0.00 4.26
500 3311 1.007271 CTGTCCTTGCGTCGTGTCT 60.007 57.895 0.00 0.00 0.00 3.41
668 3490 0.033109 GTAGGGAGCTTTTGGGCCAT 60.033 55.000 7.26 0.00 0.00 4.40
669 3491 1.382629 GTAGGGAGCTTTTGGGCCA 59.617 57.895 0.00 0.00 0.00 5.36
672 3494 5.941788 AGTATTATGTAGGGAGCTTTTGGG 58.058 41.667 0.00 0.00 0.00 4.12
701 3527 6.143118 CGACACGAGTATGTACCTAGTAGTAC 59.857 46.154 0.00 3.15 42.47 2.73
702 3528 6.209361 CGACACGAGTATGTACCTAGTAGTA 58.791 44.000 0.00 0.00 31.24 1.82
703 3529 5.046529 CGACACGAGTATGTACCTAGTAGT 58.953 45.833 0.00 0.00 31.24 2.73
704 3530 4.084641 GCGACACGAGTATGTACCTAGTAG 60.085 50.000 0.00 0.00 31.24 2.57
705 3531 3.804325 GCGACACGAGTATGTACCTAGTA 59.196 47.826 0.00 0.00 31.24 1.82
706 3532 2.611292 GCGACACGAGTATGTACCTAGT 59.389 50.000 0.00 0.00 31.24 2.57
707 3533 2.610833 TGCGACACGAGTATGTACCTAG 59.389 50.000 0.00 0.00 31.24 3.02
708 3534 2.352651 GTGCGACACGAGTATGTACCTA 59.647 50.000 0.00 0.00 31.24 3.08
709 3535 1.131883 GTGCGACACGAGTATGTACCT 59.868 52.381 0.00 0.00 31.24 3.08
710 3536 1.135603 TGTGCGACACGAGTATGTACC 60.136 52.381 0.00 0.00 37.14 3.34
743 3569 3.313526 GGATCTTTACAGCGAATGCATGT 59.686 43.478 0.00 0.00 46.23 3.21
762 3602 4.079958 ACTTTGAAAACGGCCCTATAGGAT 60.080 41.667 21.07 0.00 38.24 3.24
774 3616 4.774054 GCGTTTGTTTGAACTTTGAAAACG 59.226 37.500 17.45 17.45 46.59 3.60
775 3617 4.774054 CGCGTTTGTTTGAACTTTGAAAAC 59.226 37.500 0.00 0.00 34.97 2.43
846 3689 5.842874 ACGTTATATATATAGGGGGCCTTCC 59.157 44.000 0.84 4.96 34.61 3.46
848 3691 6.207532 ACACGTTATATATATAGGGGGCCTT 58.792 40.000 0.84 0.00 34.61 4.35
865 3708 3.151554 TCTACAGGCTTCTGACACGTTA 58.848 45.455 0.00 0.00 40.86 3.18
866 3709 1.961394 TCTACAGGCTTCTGACACGTT 59.039 47.619 0.00 0.00 40.86 3.99
867 3710 1.617322 TCTACAGGCTTCTGACACGT 58.383 50.000 0.00 0.00 40.86 4.49
868 3711 2.425312 AGATCTACAGGCTTCTGACACG 59.575 50.000 0.00 0.00 40.86 4.49
1141 4041 0.385751 AGATACACGTGCCGGATGAG 59.614 55.000 17.22 0.00 0.00 2.90
1303 4669 4.021016 TGTTTGCTGTTTTACAACCCAACT 60.021 37.500 0.00 0.00 31.02 3.16
1304 4670 4.246458 TGTTTGCTGTTTTACAACCCAAC 58.754 39.130 0.00 0.00 31.02 3.77
1305 4671 4.220821 TCTGTTTGCTGTTTTACAACCCAA 59.779 37.500 0.00 0.00 31.02 4.12
1306 4672 3.764434 TCTGTTTGCTGTTTTACAACCCA 59.236 39.130 0.00 0.00 31.02 4.51
1307 4673 4.379339 TCTGTTTGCTGTTTTACAACCC 57.621 40.909 0.00 0.00 31.02 4.11
1366 4806 8.512138 CATTTCCCTACGAAGTTTCAGTAAATT 58.488 33.333 0.00 0.00 37.78 1.82
1367 4807 7.664318 ACATTTCCCTACGAAGTTTCAGTAAAT 59.336 33.333 0.00 0.00 37.78 1.40
1368 4808 6.993902 ACATTTCCCTACGAAGTTTCAGTAAA 59.006 34.615 0.00 0.00 37.78 2.01
1369 4809 6.527423 ACATTTCCCTACGAAGTTTCAGTAA 58.473 36.000 0.00 0.00 37.78 2.24
1370 4810 6.105397 ACATTTCCCTACGAAGTTTCAGTA 57.895 37.500 0.00 0.00 37.78 2.74
1371 4811 4.969484 ACATTTCCCTACGAAGTTTCAGT 58.031 39.130 0.00 0.00 37.78 3.41
1372 4812 8.712285 TTATACATTTCCCTACGAAGTTTCAG 57.288 34.615 0.00 0.00 37.78 3.02
1373 4813 9.675464 AATTATACATTTCCCTACGAAGTTTCA 57.325 29.630 0.00 0.00 37.78 2.69
1679 5119 3.742882 GTGTCGGGAACTAAAACCACTAC 59.257 47.826 0.00 0.00 0.00 2.73
1680 5120 3.642848 AGTGTCGGGAACTAAAACCACTA 59.357 43.478 0.00 0.00 30.66 2.74
1681 5121 2.436911 AGTGTCGGGAACTAAAACCACT 59.563 45.455 0.00 0.00 0.00 4.00
1682 5122 2.842457 AGTGTCGGGAACTAAAACCAC 58.158 47.619 0.00 0.00 0.00 4.16
1683 5123 3.564053 AAGTGTCGGGAACTAAAACCA 57.436 42.857 0.00 0.00 0.00 3.67
1684 5124 6.564709 AAATAAGTGTCGGGAACTAAAACC 57.435 37.500 0.00 0.00 0.00 3.27
1685 5125 8.130469 TCAAAAATAAGTGTCGGGAACTAAAAC 58.870 33.333 0.00 0.00 0.00 2.43
1686 5126 8.223177 TCAAAAATAAGTGTCGGGAACTAAAA 57.777 30.769 0.00 0.00 0.00 1.52
1687 5127 7.804843 TCAAAAATAAGTGTCGGGAACTAAA 57.195 32.000 0.00 0.00 0.00 1.85
1688 5128 7.804843 TTCAAAAATAAGTGTCGGGAACTAA 57.195 32.000 0.00 0.00 0.00 2.24
1689 5129 7.094549 CCATTCAAAAATAAGTGTCGGGAACTA 60.095 37.037 0.00 0.00 0.00 2.24
1690 5130 6.294508 CCATTCAAAAATAAGTGTCGGGAACT 60.295 38.462 0.00 0.00 0.00 3.01
1691 5131 5.861787 CCATTCAAAAATAAGTGTCGGGAAC 59.138 40.000 0.00 0.00 0.00 3.62
1692 5132 5.770663 TCCATTCAAAAATAAGTGTCGGGAA 59.229 36.000 0.00 0.00 0.00 3.97
1693 5133 5.317808 TCCATTCAAAAATAAGTGTCGGGA 58.682 37.500 0.00 0.00 0.00 5.14
1694 5134 5.393027 CCTCCATTCAAAAATAAGTGTCGGG 60.393 44.000 0.00 0.00 0.00 5.14
1695 5135 5.393027 CCCTCCATTCAAAAATAAGTGTCGG 60.393 44.000 0.00 0.00 0.00 4.79
1696 5136 5.414454 TCCCTCCATTCAAAAATAAGTGTCG 59.586 40.000 0.00 0.00 0.00 4.35
1697 5137 6.434340 ACTCCCTCCATTCAAAAATAAGTGTC 59.566 38.462 0.00 0.00 0.00 3.67
1698 5138 6.314917 ACTCCCTCCATTCAAAAATAAGTGT 58.685 36.000 0.00 0.00 0.00 3.55
1699 5139 6.840780 ACTCCCTCCATTCAAAAATAAGTG 57.159 37.500 0.00 0.00 0.00 3.16
1700 5140 9.547279 AAATACTCCCTCCATTCAAAAATAAGT 57.453 29.630 0.00 0.00 0.00 2.24
1701 5141 9.807649 CAAATACTCCCTCCATTCAAAAATAAG 57.192 33.333 0.00 0.00 0.00 1.73
1702 5142 9.540538 TCAAATACTCCCTCCATTCAAAAATAA 57.459 29.630 0.00 0.00 0.00 1.40
1703 5143 9.713684 ATCAAATACTCCCTCCATTCAAAAATA 57.286 29.630 0.00 0.00 0.00 1.40
1704 5144 8.613922 ATCAAATACTCCCTCCATTCAAAAAT 57.386 30.769 0.00 0.00 0.00 1.82
1705 5145 9.540538 TTATCAAATACTCCCTCCATTCAAAAA 57.459 29.630 0.00 0.00 0.00 1.94
1706 5146 9.189156 CTTATCAAATACTCCCTCCATTCAAAA 57.811 33.333 0.00 0.00 0.00 2.44
1707 5147 7.779798 CCTTATCAAATACTCCCTCCATTCAAA 59.220 37.037 0.00 0.00 0.00 2.69
1708 5148 7.091993 ACCTTATCAAATACTCCCTCCATTCAA 60.092 37.037 0.00 0.00 0.00 2.69
1709 5149 6.389869 ACCTTATCAAATACTCCCTCCATTCA 59.610 38.462 0.00 0.00 0.00 2.57
1710 5150 6.842676 ACCTTATCAAATACTCCCTCCATTC 58.157 40.000 0.00 0.00 0.00 2.67
1711 5151 6.848562 ACCTTATCAAATACTCCCTCCATT 57.151 37.500 0.00 0.00 0.00 3.16
1712 5152 6.848562 AACCTTATCAAATACTCCCTCCAT 57.151 37.500 0.00 0.00 0.00 3.41
1713 5153 6.652205 AAACCTTATCAAATACTCCCTCCA 57.348 37.500 0.00 0.00 0.00 3.86
1714 5154 8.272889 ACTAAAACCTTATCAAATACTCCCTCC 58.727 37.037 0.00 0.00 0.00 4.30
1720 5160 9.969001 TGCCTTACTAAAACCTTATCAAATACT 57.031 29.630 0.00 0.00 0.00 2.12
1723 5163 9.178758 CTCTGCCTTACTAAAACCTTATCAAAT 57.821 33.333 0.00 0.00 0.00 2.32
1747 5187 2.871453 TCAACAAGGGGCCTTTAACTC 58.129 47.619 0.84 0.00 33.42 3.01
1773 5213 9.410556 CACTTGAACAAAATTTTATAGAGGGTG 57.589 33.333 2.44 4.77 0.00 4.61
1823 6303 6.403866 ACTGCACTTGAAATTTCCATTGTA 57.596 33.333 15.48 7.78 0.00 2.41
1944 7503 6.208599 ACTTGAACTGAAGTCAAAACCTGAAA 59.791 34.615 0.00 0.00 35.22 2.69
1974 7533 2.440409 AGTAGCATTTCCAGCTGGTTG 58.560 47.619 31.58 25.47 43.33 3.77
2017 7576 5.836705 TCCTCCATCCCAAAATAAATGTCA 58.163 37.500 0.00 0.00 0.00 3.58
2018 7577 6.039829 GTCTCCTCCATCCCAAAATAAATGTC 59.960 42.308 0.00 0.00 0.00 3.06
2022 7581 4.544152 AGGTCTCCTCCATCCCAAAATAAA 59.456 41.667 0.00 0.00 0.00 1.40
2032 7591 3.481453 GGCATAAAAGGTCTCCTCCATC 58.519 50.000 0.00 0.00 30.89 3.51
2120 7680 6.265577 ACTTCTGAATTTTTGTTGACTTCCG 58.734 36.000 0.00 0.00 0.00 4.30
2132 7692 9.832445 TTACTCAACTAGTGACTTCTGAATTTT 57.168 29.630 0.00 0.00 39.39 1.82
2136 7696 8.255206 TGTTTTACTCAACTAGTGACTTCTGAA 58.745 33.333 0.00 0.00 39.39 3.02
2187 7988 2.039418 TGCTACCAATGATCGTAGGCT 58.961 47.619 7.38 0.00 33.90 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.