Multiple sequence alignment - TraesCS6B01G329000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G329000 chr6B 100.000 7217 0 0 1 7217 578511911 578519127 0.000000e+00 13328.0
1 TraesCS6B01G329000 chr6B 90.628 1942 168 10 4281 6216 260109035 260110968 0.000000e+00 2566.0
2 TraesCS6B01G329000 chr6B 88.458 979 100 6 3292 4260 260108003 260108978 0.000000e+00 1170.0
3 TraesCS6B01G329000 chr6B 82.934 961 116 34 2351 3279 260106853 260107797 0.000000e+00 822.0
4 TraesCS6B01G329000 chr6B 91.429 245 11 1 1247 1491 578512923 578513157 1.940000e-85 327.0
5 TraesCS6B01G329000 chr6B 91.429 245 11 1 1013 1247 578513157 578513401 1.940000e-85 327.0
6 TraesCS6B01G329000 chr6D 95.084 6571 197 30 3 6515 387638558 387645060 0.000000e+00 10229.0
7 TraesCS6B01G329000 chr6D 87.240 2257 232 33 4281 6515 147665125 147667347 0.000000e+00 2521.0
8 TraesCS6B01G329000 chr6D 87.960 1005 107 9 3269 4260 147664065 147665068 0.000000e+00 1173.0
9 TraesCS6B01G329000 chr6D 93.935 709 32 4 6514 7217 387645092 387645794 0.000000e+00 1061.0
10 TraesCS6B01G329000 chr6D 87.448 725 75 12 2351 3068 147654438 147655153 0.000000e+00 821.0
11 TraesCS6B01G329000 chr6D 75.456 933 164 38 1239 2129 147650073 147650982 1.890000e-105 394.0
12 TraesCS6B01G329000 chr6D 90.545 275 19 4 1240 1511 387639520 387639790 2.480000e-94 357.0
13 TraesCS6B01G329000 chr6D 89.558 249 12 2 1013 1247 387639785 387640033 3.270000e-78 303.0
14 TraesCS6B01G329000 chr6A 94.971 6502 240 39 32 6480 532645573 532652040 0.000000e+00 10115.0
15 TraesCS6B01G329000 chr6A 91.002 1178 97 6 4281 5457 199999926 199998757 0.000000e+00 1580.0
16 TraesCS6B01G329000 chr6A 93.050 705 40 3 6514 7217 532652950 532653646 0.000000e+00 1022.0
17 TraesCS6B01G329000 chr6A 88.889 747 77 5 5491 6231 199995473 199994727 0.000000e+00 915.0
18 TraesCS6B01G329000 chr6A 82.510 1012 117 35 2303 3279 200003977 200002991 0.000000e+00 833.0
19 TraesCS6B01G329000 chr6A 88.468 581 54 7 3699 4269 200000551 199999974 0.000000e+00 689.0
20 TraesCS6B01G329000 chr6A 86.947 452 54 3 3272 3719 200002970 200002520 3.010000e-138 503.0
21 TraesCS6B01G329000 chr6A 91.429 245 11 1 1013 1247 532646807 532647051 1.940000e-85 327.0
22 TraesCS6B01G329000 chr6A 87.500 280 24 5 1241 1511 532646535 532646812 5.440000e-81 313.0
23 TraesCS6B01G329000 chr6A 94.872 39 2 0 6477 6515 532652880 532652918 2.170000e-05 62.1
24 TraesCS6B01G329000 chr1D 84.856 832 95 15 3457 4274 462493972 462493158 0.000000e+00 809.0
25 TraesCS6B01G329000 chr1D 79.772 351 27 18 5804 6141 462491790 462491471 1.580000e-51 215.0
26 TraesCS6B01G329000 chr1D 89.865 148 14 1 4282 4428 462493101 462492954 9.560000e-44 189.0
27 TraesCS6B01G329000 chr1D 83.495 206 27 3 4498 4703 462492950 462492752 1.240000e-42 185.0
28 TraesCS6B01G329000 chr1B 81.182 829 91 25 4710 5536 637635838 637635073 2.230000e-169 606.0
29 TraesCS6B01G329000 chr1B 84.878 205 22 3 4079 4274 637636555 637636351 1.590000e-46 198.0
30 TraesCS6B01G329000 chr1B 84.466 206 25 3 4498 4703 637636163 637635965 5.710000e-46 196.0
31 TraesCS6B01G329000 chr1B 92.157 102 8 0 4327 4428 637636268 637636167 2.100000e-30 145.0
32 TraesCS6B01G329000 chr7A 78.805 887 158 19 4794 5662 533565860 533566734 2.920000e-158 569.0
33 TraesCS6B01G329000 chr7B 78.140 430 85 9 5789 6215 490686286 490685863 1.540000e-66 265.0
34 TraesCS6B01G329000 chr7B 75.366 410 83 17 3224 3623 490686717 490686316 1.600000e-41 182.0
35 TraesCS6B01G329000 chrUn 86.441 236 26 3 1520 1755 96732136 96732365 3.340000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G329000 chr6B 578511911 578519127 7216 False 13328.000000 13328 100.00000 1 7217 1 chr6B.!!$F1 7216
1 TraesCS6B01G329000 chr6B 260106853 260110968 4115 False 1519.333333 2566 87.34000 2351 6216 3 chr6B.!!$F2 3865
2 TraesCS6B01G329000 chr6D 387638558 387645060 6502 False 10229.000000 10229 95.08400 3 6515 1 chr6D.!!$F1 6512
3 TraesCS6B01G329000 chr6D 147664065 147667347 3282 False 1847.000000 2521 87.60000 3269 6515 2 chr6D.!!$F4 3246
4 TraesCS6B01G329000 chr6D 387645092 387645794 702 False 1061.000000 1061 93.93500 6514 7217 1 chr6D.!!$F2 703
5 TraesCS6B01G329000 chr6D 147650073 147655153 5080 False 607.500000 821 81.45200 1239 3068 2 chr6D.!!$F3 1829
6 TraesCS6B01G329000 chr6D 387639520 387640033 513 False 330.000000 357 90.05150 1013 1511 2 chr6D.!!$F5 498
7 TraesCS6B01G329000 chr6A 532645573 532652040 6467 False 10115.000000 10115 94.97100 32 6480 1 chr6A.!!$F1 6448
8 TraesCS6B01G329000 chr6A 199994727 200003977 9250 True 904.000000 1580 87.56320 2303 6231 5 chr6A.!!$R1 3928
9 TraesCS6B01G329000 chr6A 532652880 532653646 766 False 542.050000 1022 93.96100 6477 7217 2 chr6A.!!$F3 740
10 TraesCS6B01G329000 chr6A 532646535 532647051 516 False 320.000000 327 89.46450 1013 1511 2 chr6A.!!$F2 498
11 TraesCS6B01G329000 chr1D 462491471 462493972 2501 True 349.500000 809 84.49700 3457 6141 4 chr1D.!!$R1 2684
12 TraesCS6B01G329000 chr1B 637635073 637636555 1482 True 286.250000 606 85.67075 4079 5536 4 chr1B.!!$R1 1457
13 TraesCS6B01G329000 chr7A 533565860 533566734 874 False 569.000000 569 78.80500 4794 5662 1 chr7A.!!$F1 868
14 TraesCS6B01G329000 chr7B 490685863 490686717 854 True 223.500000 265 76.75300 3224 6215 2 chr7B.!!$R1 2991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 1028 0.174389 TCTGCGGTCTCTGATGCTTC 59.826 55.000 0.00 0.0 0.00 3.86 F
1603 1716 0.179171 CTGCAAGCTCAAAGCATCGG 60.179 55.000 1.29 0.0 45.56 4.18 F
1781 1909 0.744874 TACGGTGGCTCTATCTGCAC 59.255 55.000 0.00 0.0 0.00 4.57 F
2163 5454 1.279846 TCAGCACATCAGAGCATTCCA 59.720 47.619 0.00 0.0 33.43 3.53 F
3161 6570 1.391485 CGCTCATTCAGTTGTCTTCCG 59.609 52.381 0.00 0.0 0.00 4.30 F
4000 9600 0.951040 GAACCTGAGCACCAAGACGG 60.951 60.000 0.00 0.0 42.50 4.79 F
4684 10346 8.997323 GCTTATGCTCAAGTCTATGAATATTGT 58.003 33.333 0.00 0.0 36.03 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 1919 1.401931 CCTGCAATGCGAAAGGAACTG 60.402 52.381 4.25 0.00 40.86 3.16 R
2860 6233 2.101415 GGAGCATTTATTTCCCACCTGC 59.899 50.000 0.00 0.00 0.00 4.85 R
2861 6234 3.364549 TGGAGCATTTATTTCCCACCTG 58.635 45.455 0.00 0.00 0.00 4.00 R
3897 9497 2.632996 ACTCGTCTCCAACCATTTCAGA 59.367 45.455 0.00 0.00 0.00 3.27 R
4613 10275 1.266178 TGATCTCCGGCTCAGTGAAA 58.734 50.000 0.00 0.00 0.00 2.69 R
5816 14869 2.032178 GGAAGCTGCCAATTATGTCGAC 59.968 50.000 5.59 9.11 0.00 4.20 R
6450 15534 0.249676 ACATCTGCACAGCCAGAGAG 59.750 55.000 0.00 0.00 44.37 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.783242 CCAACCTCAAACATTCGTAGTTG 58.217 43.478 0.00 0.00 34.55 3.16
25 26 4.274950 CCAACCTCAAACATTCGTAGTTGT 59.725 41.667 0.00 0.00 33.27 3.32
26 27 5.467399 CCAACCTCAAACATTCGTAGTTGTA 59.533 40.000 0.00 0.00 33.27 2.41
27 28 6.017770 CCAACCTCAAACATTCGTAGTTGTAA 60.018 38.462 0.00 0.00 33.27 2.41
28 29 6.535274 ACCTCAAACATTCGTAGTTGTAAC 57.465 37.500 0.00 0.00 0.00 2.50
29 30 6.285990 ACCTCAAACATTCGTAGTTGTAACT 58.714 36.000 2.51 2.51 42.91 2.24
30 31 7.436118 ACCTCAAACATTCGTAGTTGTAACTA 58.564 34.615 0.50 0.50 40.37 2.24
57 58 4.593597 GCACCATGATGCATTTTTCTTG 57.406 40.909 7.34 0.00 45.39 3.02
70 71 6.131389 GCATTTTTCTTGCAAATGTGAAGTC 58.869 36.000 0.00 0.00 41.72 3.01
93 94 2.895404 GGGTGTGGTTCTAGTGTAGTCA 59.105 50.000 0.00 0.00 0.00 3.41
163 170 3.950397 TCGAAGCAACTACCAATCCATT 58.050 40.909 0.00 0.00 0.00 3.16
164 171 5.092554 TCGAAGCAACTACCAATCCATTA 57.907 39.130 0.00 0.00 0.00 1.90
181 188 9.888878 CAATCCATTATCAGTTAATAAGCACAG 57.111 33.333 0.00 0.00 0.00 3.66
272 282 0.754587 AGACGGACGACCTAATCCCC 60.755 60.000 1.72 0.00 0.00 4.81
274 284 0.398098 ACGGACGACCTAATCCCCAT 60.398 55.000 1.72 0.00 0.00 4.00
299 309 3.495276 GGATTCACCCTAGAAGCTTAGCC 60.495 52.174 0.00 0.00 34.50 3.93
318 328 2.262915 CAGCGAACGGAAGGCTCT 59.737 61.111 0.00 0.00 34.13 4.09
319 329 2.097038 CAGCGAACGGAAGGCTCTG 61.097 63.158 0.00 0.00 34.13 3.35
635 651 3.636231 CGGAAGAGGCCACCACCA 61.636 66.667 5.01 0.00 0.00 4.17
684 702 3.821995 CCCTTATGGCCGTTTCCG 58.178 61.111 0.77 0.00 0.00 4.30
688 706 1.287425 CTTATGGCCGTTTCCGTCTC 58.713 55.000 0.77 0.00 0.00 3.36
701 719 1.021390 CCGTCTCATTCTTGCGGCTT 61.021 55.000 0.00 0.00 35.90 4.35
781 830 2.679716 GCCATCCCCTGTTGCTCT 59.320 61.111 0.00 0.00 0.00 4.09
782 831 1.452833 GCCATCCCCTGTTGCTCTC 60.453 63.158 0.00 0.00 0.00 3.20
783 832 1.225704 CCATCCCCTGTTGCTCTCC 59.774 63.158 0.00 0.00 0.00 3.71
784 833 1.277580 CCATCCCCTGTTGCTCTCCT 61.278 60.000 0.00 0.00 0.00 3.69
785 834 0.179936 CATCCCCTGTTGCTCTCCTC 59.820 60.000 0.00 0.00 0.00 3.71
786 835 0.985490 ATCCCCTGTTGCTCTCCTCC 60.985 60.000 0.00 0.00 0.00 4.30
787 836 2.581354 CCCTGTTGCTCTCCTCCG 59.419 66.667 0.00 0.00 0.00 4.63
788 837 2.286523 CCCTGTTGCTCTCCTCCGT 61.287 63.158 0.00 0.00 0.00 4.69
789 838 1.674057 CCTGTTGCTCTCCTCCGTT 59.326 57.895 0.00 0.00 0.00 4.44
790 839 0.671781 CCTGTTGCTCTCCTCCGTTG 60.672 60.000 0.00 0.00 0.00 4.10
791 840 0.671781 CTGTTGCTCTCCTCCGTTGG 60.672 60.000 0.00 0.00 0.00 3.77
792 841 2.035442 GTTGCTCTCCTCCGTTGGC 61.035 63.158 0.00 0.00 0.00 4.52
793 842 3.589654 TTGCTCTCCTCCGTTGGCG 62.590 63.158 0.00 0.00 37.95 5.69
795 844 4.821589 CTCTCCTCCGTTGGCGCC 62.822 72.222 22.73 22.73 36.67 6.53
815 864 4.075793 CCCCTCCCTCCTCCGTCA 62.076 72.222 0.00 0.00 0.00 4.35
890 939 3.665675 AATCTCCACGCGGCAGACC 62.666 63.158 12.47 0.00 0.00 3.85
947 996 1.067582 GCCGCCTTACTCGCATACT 59.932 57.895 0.00 0.00 0.00 2.12
962 1011 2.546795 GCATACTTGGCGCTCTGTATCT 60.547 50.000 7.64 0.00 0.00 1.98
968 1017 4.310672 CGCTCTGTATCTGCGGTC 57.689 61.111 0.00 0.00 45.07 4.79
979 1028 0.174389 TCTGCGGTCTCTGATGCTTC 59.826 55.000 0.00 0.00 0.00 3.86
982 1031 0.869454 GCGGTCTCTGATGCTTCTCG 60.869 60.000 0.88 0.00 0.00 4.04
1006 1055 1.153765 CGCAGTTCGAGCATGGAGA 60.154 57.895 1.01 0.00 41.67 3.71
1054 1103 2.555757 CCCTGCAAGAGGAAGAACAAAG 59.444 50.000 0.00 0.00 46.33 2.77
1056 1105 1.956477 TGCAAGAGGAAGAACAAAGCC 59.044 47.619 0.00 0.00 0.00 4.35
1077 1126 2.760650 CCAAGGGAAAGGCAAGGTAATC 59.239 50.000 0.00 0.00 0.00 1.75
1080 1129 5.200483 CAAGGGAAAGGCAAGGTAATCATA 58.800 41.667 0.00 0.00 0.00 2.15
1081 1130 5.466127 AGGGAAAGGCAAGGTAATCATAA 57.534 39.130 0.00 0.00 0.00 1.90
1082 1131 6.030727 AGGGAAAGGCAAGGTAATCATAAT 57.969 37.500 0.00 0.00 0.00 1.28
1083 1132 7.161715 AGGGAAAGGCAAGGTAATCATAATA 57.838 36.000 0.00 0.00 0.00 0.98
1085 1134 8.234525 AGGGAAAGGCAAGGTAATCATAATAAT 58.765 33.333 0.00 0.00 0.00 1.28
1086 1135 8.306761 GGGAAAGGCAAGGTAATCATAATAATG 58.693 37.037 0.00 0.00 0.00 1.90
1087 1136 8.306761 GGAAAGGCAAGGTAATCATAATAATGG 58.693 37.037 0.00 0.00 33.61 3.16
1090 1140 6.721208 AGGCAAGGTAATCATAATAATGGGTG 59.279 38.462 0.00 0.00 33.61 4.61
1143 1196 4.262377 CCCTTCTGACCAGATGCTAGTATG 60.262 50.000 0.00 0.00 37.29 2.39
1165 1228 4.341806 TGTGATTGTGTTTTCTGGATTGCT 59.658 37.500 0.00 0.00 0.00 3.91
1316 1397 7.489160 CAAGGGAAAGGCAAGGTAATAATAAC 58.511 38.462 0.00 0.00 0.00 1.89
1363 1444 1.428912 TGCCTTGGTTTCCCTTCTGAT 59.571 47.619 0.00 0.00 0.00 2.90
1532 1645 3.569701 CCAGCTTTGGTGTTTGTATCAGT 59.430 43.478 0.00 0.00 0.00 3.41
1537 1650 8.124823 CAGCTTTGGTGTTTGTATCAGTATATG 58.875 37.037 0.00 0.00 0.00 1.78
1603 1716 0.179171 CTGCAAGCTCAAAGCATCGG 60.179 55.000 1.29 0.00 45.56 4.18
1622 1735 2.416547 CGGGACTTTGCAGTATGTCTTG 59.583 50.000 4.88 0.00 39.31 3.02
1630 1743 5.673337 TTGCAGTATGTCTTGAACTTGTC 57.327 39.130 0.00 0.00 39.31 3.18
1647 1760 5.821204 ACTTGTCATGTTTACTTTCTGTGC 58.179 37.500 0.00 0.00 0.00 4.57
1654 1782 5.243426 TGTTTACTTTCTGTGCTGGTTTC 57.757 39.130 0.00 0.00 0.00 2.78
1671 1799 6.092807 GCTGGTTTCTATTTCTTTCTGACGAT 59.907 38.462 0.00 0.00 0.00 3.73
1673 1801 9.151471 CTGGTTTCTATTTCTTTCTGACGATTA 57.849 33.333 0.00 0.00 0.00 1.75
1693 1821 2.183478 TGTATGATAATGGCCCTGCG 57.817 50.000 0.00 0.00 0.00 5.18
1781 1909 0.744874 TACGGTGGCTCTATCTGCAC 59.255 55.000 0.00 0.00 0.00 4.57
1791 1919 2.036992 CTCTATCTGCACCACCTGGATC 59.963 54.545 0.00 0.00 38.94 3.36
1887 2015 2.039974 TAGGCGTGCCATGCAGTTG 61.040 57.895 14.29 0.00 40.08 3.16
1889 2017 2.429571 GCGTGCCATGCAGTTGTG 60.430 61.111 3.49 0.00 40.08 3.33
1979 2107 4.080582 TCCAGTTCCTGAAAACACTGAAGA 60.081 41.667 0.00 0.00 39.25 2.87
2014 2142 2.703536 TGCCCAGTGAAGTTAGTTCAGA 59.296 45.455 2.32 0.00 46.18 3.27
2015 2143 3.244215 TGCCCAGTGAAGTTAGTTCAGAG 60.244 47.826 2.32 0.00 46.18 3.35
2017 2145 3.244215 CCCAGTGAAGTTAGTTCAGAGCA 60.244 47.826 2.32 0.00 46.18 4.26
2135 2263 5.674052 ACTGAAGAGACTAATGCTGATGT 57.326 39.130 0.00 0.00 0.00 3.06
2141 2269 5.798132 AGAGACTAATGCTGATGTTGACAA 58.202 37.500 0.00 0.00 0.00 3.18
2144 2272 7.065563 AGAGACTAATGCTGATGTTGACAATTC 59.934 37.037 0.00 0.00 0.00 2.17
2145 2273 6.656270 AGACTAATGCTGATGTTGACAATTCA 59.344 34.615 0.00 0.00 0.00 2.57
2163 5454 1.279846 TCAGCACATCAGAGCATTCCA 59.720 47.619 0.00 0.00 33.43 3.53
2405 5776 1.719600 GCTGTACAGGAGTGCTTCAG 58.280 55.000 23.95 0.00 0.00 3.02
2607 5978 2.825532 ACATGGCGCCTCTTAAACATTT 59.174 40.909 29.70 0.00 0.00 2.32
2610 5981 2.227865 TGGCGCCTCTTAAACATTTGTC 59.772 45.455 29.70 0.00 0.00 3.18
2614 5985 5.324697 GCGCCTCTTAAACATTTGTCTAAG 58.675 41.667 0.00 0.00 0.00 2.18
2632 6003 5.596772 GTCTAAGCTAGGAGTTCTGATCCTT 59.403 44.000 5.21 0.00 45.13 3.36
2648 6019 6.992715 TCTGATCCTTTAGGCTTGTATTAAGC 59.007 38.462 0.00 3.16 42.30 3.09
2653 6024 8.029782 TCCTTTAGGCTTGTATTAAGCATCTA 57.970 34.615 12.97 4.31 44.71 1.98
2818 6191 7.007723 AGAGGGTATCTTATGAGTTAGGACTG 58.992 42.308 0.00 0.00 32.71 3.51
2860 6233 7.026631 TGGTTTTCAAGTTAGACATGACAAG 57.973 36.000 0.00 0.00 0.00 3.16
2861 6234 5.915196 GGTTTTCAAGTTAGACATGACAAGC 59.085 40.000 0.00 0.70 30.60 4.01
2940 6313 4.134563 GTCCAGGTTGTGTATCTGTTTGT 58.865 43.478 0.00 0.00 0.00 2.83
3149 6558 4.433615 TGGTTAAGTCTGATCGCTCATTC 58.566 43.478 0.00 0.00 0.00 2.67
3161 6570 1.391485 CGCTCATTCAGTTGTCTTCCG 59.609 52.381 0.00 0.00 0.00 4.30
3167 6576 5.227908 TCATTCAGTTGTCTTCCGTAACTC 58.772 41.667 0.00 0.00 32.69 3.01
3323 6927 4.965532 ACTCCTTATCAGATGGCTTAGTGT 59.034 41.667 0.00 0.00 0.00 3.55
3698 7308 1.536418 ACCAGCTGTAGAGGTGCCA 60.536 57.895 13.81 0.00 44.92 4.92
3806 9406 2.248248 CACAAGAGTCTACCACCAGGA 58.752 52.381 0.00 0.00 38.69 3.86
3897 9497 2.514803 AGCGGCAAATTGGTAAGAAGT 58.485 42.857 1.45 0.00 0.00 3.01
4000 9600 0.951040 GAACCTGAGCACCAAGACGG 60.951 60.000 0.00 0.00 42.50 4.79
4684 10346 8.997323 GCTTATGCTCAAGTCTATGAATATTGT 58.003 33.333 0.00 0.00 36.03 2.71
5816 14869 5.707298 ACTGTTATGTCAGTCCCATCTTTTG 59.293 40.000 0.00 0.00 44.07 2.44
6134 15206 2.165357 TATCAGAGCCAGCTTGGAGA 57.835 50.000 6.40 0.00 40.96 3.71
6272 15344 3.499338 TGATGGAAGCTGATTTGTGGTT 58.501 40.909 0.00 0.00 0.00 3.67
6273 15345 4.661222 TGATGGAAGCTGATTTGTGGTTA 58.339 39.130 0.00 0.00 0.00 2.85
6335 15412 5.346181 ACTGCCCTCTACTTCATTTACTC 57.654 43.478 0.00 0.00 0.00 2.59
6409 15486 6.480320 GGTTGATATAGCTCGTGATGAAAACT 59.520 38.462 0.00 0.00 0.00 2.66
6450 15534 2.796593 GCTGTTGAACCTGCACATTTTC 59.203 45.455 5.72 0.00 0.00 2.29
6456 15540 3.817084 TGAACCTGCACATTTTCTCTCTG 59.183 43.478 0.00 0.00 0.00 3.35
6510 15596 2.032894 AGATTTATTCGTTGCATCGCCG 60.033 45.455 12.30 0.98 0.00 6.46
6525 15644 2.584608 CCGCCATCTTTCGGGAGT 59.415 61.111 0.00 0.00 41.82 3.85
6528 15647 1.084370 CGCCATCTTTCGGGAGTGAC 61.084 60.000 0.00 0.00 0.00 3.67
6558 15677 0.106918 ACACGGCCTCTGGTGAAAAA 60.107 50.000 14.53 0.00 37.58 1.94
6559 15678 0.593128 CACGGCCTCTGGTGAAAAAG 59.407 55.000 0.00 0.00 36.25 2.27
6619 15742 1.271597 GGCACAGATCTTTGTGGAGGT 60.272 52.381 14.83 0.00 46.62 3.85
6634 15757 4.110482 GTGGAGGTAGTTGTACGCATAAG 58.890 47.826 0.00 0.00 0.00 1.73
6657 15780 0.385390 ACGCTTCTGTGCAAAAAGGG 59.615 50.000 15.24 15.24 0.00 3.95
6729 15852 2.060370 CAGCACAGCCCCCAAATTT 58.940 52.632 0.00 0.00 0.00 1.82
6751 15874 5.586155 TCCCAAACCTAATGGAGTTACAA 57.414 39.130 0.00 0.00 40.56 2.41
6807 15930 2.418910 CGACAGCGGTCCAGATCCT 61.419 63.158 11.54 0.00 41.13 3.24
6873 15997 2.984623 AGGCTTCAGCATCTCGCA 59.015 55.556 0.30 0.00 46.13 5.10
6922 16046 2.486716 CTCCTCCCCCTTTCAAGATCT 58.513 52.381 0.00 0.00 0.00 2.75
6973 16097 2.273776 GCTCCTGGCCTCCTTTCC 59.726 66.667 3.32 0.00 34.27 3.13
6988 16115 3.642741 TTCCCTCCCAGGCTCCTCC 62.643 68.421 0.00 0.00 32.73 4.30
6990 16117 2.445654 CCTCCCAGGCTCCTCCTC 60.446 72.222 0.00 0.00 45.52 3.71
6991 16118 2.366167 CTCCCAGGCTCCTCCTCA 59.634 66.667 0.00 0.00 45.52 3.86
6992 16119 2.039624 TCCCAGGCTCCTCCTCAC 59.960 66.667 0.00 0.00 45.52 3.51
6993 16120 2.040278 CCCAGGCTCCTCCTCACT 59.960 66.667 0.00 0.00 45.52 3.41
6994 16121 2.063378 CCCAGGCTCCTCCTCACTC 61.063 68.421 0.00 0.00 45.52 3.51
6995 16122 1.001503 CCAGGCTCCTCCTCACTCT 59.998 63.158 0.00 0.00 45.52 3.24
6996 16123 0.617249 CCAGGCTCCTCCTCACTCTT 60.617 60.000 0.00 0.00 45.52 2.85
6997 16124 1.274712 CAGGCTCCTCCTCACTCTTT 58.725 55.000 0.00 0.00 45.52 2.52
7068 16195 3.381949 GAGGCAATGATACACCTACGAC 58.618 50.000 0.00 0.00 30.95 4.34
7101 16228 5.652994 ACTTGCAAGGTTTTCTGTTGTTA 57.347 34.783 29.18 0.00 0.00 2.41
7117 16244 1.002659 TGTTAACATGGACTGGGGTCG 59.997 52.381 3.59 0.00 42.97 4.79
7122 16249 1.913419 ACATGGACTGGGGTCGTATTT 59.087 47.619 0.00 0.00 42.97 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.591170 ACGAATGTTTGAGGTTGGCG 59.409 50.000 0.00 0.00 0.00 5.69
1 2 2.812011 ACTACGAATGTTTGAGGTTGGC 59.188 45.455 0.00 0.00 0.00 4.52
6 7 6.780706 AGTTACAACTACGAATGTTTGAGG 57.219 37.500 0.00 0.00 37.52 3.86
24 25 4.511826 GCATCATGGTGCCTTACTAGTTAC 59.488 45.833 20.73 0.00 39.18 2.50
25 26 4.163268 TGCATCATGGTGCCTTACTAGTTA 59.837 41.667 27.60 2.14 44.43 2.24
26 27 3.054434 TGCATCATGGTGCCTTACTAGTT 60.054 43.478 27.60 0.00 44.43 2.24
27 28 2.505407 TGCATCATGGTGCCTTACTAGT 59.495 45.455 27.60 0.00 44.43 2.57
28 29 3.198409 TGCATCATGGTGCCTTACTAG 57.802 47.619 27.60 0.00 44.43 2.57
29 30 3.862877 ATGCATCATGGTGCCTTACTA 57.137 42.857 27.60 8.72 44.43 1.82
30 31 2.742428 ATGCATCATGGTGCCTTACT 57.258 45.000 27.60 4.97 44.43 2.24
57 58 1.956477 ACACCCAGACTTCACATTTGC 59.044 47.619 0.00 0.00 0.00 3.68
70 71 2.897969 ACTACACTAGAACCACACCCAG 59.102 50.000 0.00 0.00 0.00 4.45
105 109 5.518487 GCTTGTGCTATCTCAGTTCTAGAAC 59.482 44.000 25.24 25.24 37.62 3.01
163 170 5.427378 TGCTGCTGTGCTTATTAACTGATA 58.573 37.500 0.00 0.00 0.00 2.15
164 171 4.264253 TGCTGCTGTGCTTATTAACTGAT 58.736 39.130 0.00 0.00 0.00 2.90
181 188 2.356673 GGTTTGGCAAGCTGCTGC 60.357 61.111 13.83 7.62 44.28 5.25
192 199 5.767816 ACTAGTTGTAAGCTTTGGTTTGG 57.232 39.130 3.20 0.00 0.00 3.28
193 200 6.204882 AGCTACTAGTTGTAAGCTTTGGTTTG 59.795 38.462 11.37 0.00 34.41 2.93
194 201 6.296803 AGCTACTAGTTGTAAGCTTTGGTTT 58.703 36.000 11.37 0.00 34.41 3.27
195 202 5.866207 AGCTACTAGTTGTAAGCTTTGGTT 58.134 37.500 11.37 0.00 34.41 3.67
196 203 5.485209 AGCTACTAGTTGTAAGCTTTGGT 57.515 39.130 11.37 0.00 34.41 3.67
272 282 2.487934 CTTCTAGGGTGAATCCGCATG 58.512 52.381 0.00 0.00 37.00 4.06
274 284 0.178068 GCTTCTAGGGTGAATCCGCA 59.822 55.000 0.00 0.00 37.00 5.69
413 423 1.685765 GCCCCATCCAAAACCCTCC 60.686 63.158 0.00 0.00 0.00 4.30
631 647 2.183679 ACCTTTCTCTCTAGCCTGGTG 58.816 52.381 0.00 0.00 0.00 4.17
632 648 2.632763 ACCTTTCTCTCTAGCCTGGT 57.367 50.000 0.00 0.00 0.00 4.00
633 649 2.159170 CGAACCTTTCTCTCTAGCCTGG 60.159 54.545 0.00 0.00 0.00 4.45
634 650 2.494073 ACGAACCTTTCTCTCTAGCCTG 59.506 50.000 0.00 0.00 0.00 4.85
635 651 2.494073 CACGAACCTTTCTCTCTAGCCT 59.506 50.000 0.00 0.00 0.00 4.58
682 700 1.021390 AAGCCGCAAGAATGAGACGG 61.021 55.000 0.00 0.00 46.50 4.79
684 702 0.371645 CGAAGCCGCAAGAATGAGAC 59.628 55.000 0.00 0.00 43.02 3.36
701 719 0.947180 GTTGGGCTTAAGTGTCGCGA 60.947 55.000 3.71 3.71 0.00 5.87
797 846 4.862823 GACGGAGGAGGGAGGGGG 62.863 77.778 0.00 0.00 0.00 5.40
798 847 4.075793 TGACGGAGGAGGGAGGGG 62.076 72.222 0.00 0.00 0.00 4.79
799 848 2.760385 GTGACGGAGGAGGGAGGG 60.760 72.222 0.00 0.00 0.00 4.30
800 849 2.760385 GGTGACGGAGGAGGGAGG 60.760 72.222 0.00 0.00 0.00 4.30
801 850 2.760385 GGGTGACGGAGGAGGGAG 60.760 72.222 0.00 0.00 0.00 4.30
802 851 4.393778 GGGGTGACGGAGGAGGGA 62.394 72.222 0.00 0.00 0.00 4.20
803 852 4.400251 AGGGGTGACGGAGGAGGG 62.400 72.222 0.00 0.00 0.00 4.30
804 853 2.760385 GAGGGGTGACGGAGGAGG 60.760 72.222 0.00 0.00 0.00 4.30
805 854 1.755008 GAGAGGGGTGACGGAGGAG 60.755 68.421 0.00 0.00 0.00 3.69
908 957 1.647084 GAAACTCACACCGCACACC 59.353 57.895 0.00 0.00 0.00 4.16
909 958 1.647084 GGAAACTCACACCGCACAC 59.353 57.895 0.00 0.00 0.00 3.82
910 959 1.885388 CGGAAACTCACACCGCACA 60.885 57.895 0.00 0.00 40.19 4.57
911 960 2.604174 CCGGAAACTCACACCGCAC 61.604 63.158 0.00 0.00 44.45 5.34
912 961 2.280524 CCGGAAACTCACACCGCA 60.281 61.111 0.00 0.00 44.45 5.69
913 962 3.723348 GCCGGAAACTCACACCGC 61.723 66.667 5.05 0.00 44.45 5.68
914 963 3.047877 GGCCGGAAACTCACACCG 61.048 66.667 5.05 0.00 45.24 4.94
915 964 3.047877 CGGCCGGAAACTCACACC 61.048 66.667 20.10 0.00 0.00 4.16
947 996 1.519234 CGCAGATACAGAGCGCCAA 60.519 57.895 2.29 0.00 45.14 4.52
954 1003 2.420058 TCAGAGACCGCAGATACAGA 57.580 50.000 0.00 0.00 0.00 3.41
962 1011 0.174389 GAGAAGCATCAGAGACCGCA 59.826 55.000 0.00 0.00 0.00 5.69
982 1031 3.482783 GCTCGAACTGCGACCTGC 61.483 66.667 0.00 0.00 45.59 4.85
1006 1055 1.521681 GCGCGTTGCTATCCTCCTT 60.522 57.895 8.43 0.00 41.73 3.36
1054 1103 2.285773 CCTTGCCTTTCCCTTGGGC 61.286 63.158 0.00 0.00 45.45 5.36
1056 1105 2.302587 TTACCTTGCCTTTCCCTTGG 57.697 50.000 0.00 0.00 0.00 3.61
1077 1126 7.546667 GGCAGATAAAATGCACCCATTATTATG 59.453 37.037 0.00 0.00 45.68 1.90
1080 1129 5.221702 GGGCAGATAAAATGCACCCATTATT 60.222 40.000 0.00 0.00 45.68 1.40
1081 1130 4.284234 GGGCAGATAAAATGCACCCATTAT 59.716 41.667 0.00 0.00 45.68 1.28
1082 1131 3.640967 GGGCAGATAAAATGCACCCATTA 59.359 43.478 0.00 0.00 45.68 1.90
1083 1132 2.435437 GGGCAGATAAAATGCACCCATT 59.565 45.455 0.00 0.00 45.68 3.16
1085 1134 1.484038 GGGCAGATAAAATGCACCCA 58.516 50.000 0.00 0.00 45.68 4.51
1143 1196 4.874970 AGCAATCCAGAAAACACAATCAC 58.125 39.130 0.00 0.00 0.00 3.06
1165 1228 4.072131 GTCTTGTTCTTGTTGCCATCCTA 58.928 43.478 0.00 0.00 0.00 2.94
1176 1239 4.320788 GCATCTTCCTTGGTCTTGTTCTTG 60.321 45.833 0.00 0.00 0.00 3.02
1277 1358 1.804151 TCCCTTGCGATTTGTTCTTCG 59.196 47.619 0.00 0.00 38.37 3.79
1316 1397 3.460103 GGCAGATAAAATGCACCCATTG 58.540 45.455 0.00 0.00 45.68 2.82
1363 1444 6.044682 CACACAATCACATACTAGCATCTGA 58.955 40.000 0.00 0.00 0.00 3.27
1420 1506 4.320788 GCATCTTCCTTGGTCTTGTTCTTG 60.321 45.833 0.00 0.00 0.00 3.02
1465 1551 3.744426 CCTCCAATTTCTGCAGCTTTTTG 59.256 43.478 9.47 9.79 0.00 2.44
1532 1645 5.069914 ACAGTCAGACCGGCATTAACATATA 59.930 40.000 0.00 0.00 0.00 0.86
1537 1650 2.094762 ACAGTCAGACCGGCATTAAC 57.905 50.000 0.00 0.00 0.00 2.01
1603 1716 4.757149 AGTTCAAGACATACTGCAAAGTCC 59.243 41.667 0.00 0.00 0.00 3.85
1622 1735 6.414987 GCACAGAAAGTAAACATGACAAGTTC 59.585 38.462 0.00 0.00 0.00 3.01
1630 1743 4.836125 ACCAGCACAGAAAGTAAACATG 57.164 40.909 0.00 0.00 0.00 3.21
1647 1760 7.602517 ATCGTCAGAAAGAAATAGAAACCAG 57.397 36.000 0.00 0.00 0.00 4.00
1671 1799 4.260985 CGCAGGGCCATTATCATACATAA 58.739 43.478 6.18 0.00 0.00 1.90
1673 1801 2.715046 CGCAGGGCCATTATCATACAT 58.285 47.619 6.18 0.00 0.00 2.29
1681 1809 0.537143 CCTATTGCGCAGGGCCATTA 60.537 55.000 11.31 0.00 42.61 1.90
1693 1821 1.869767 CGATCCTGTGCTTCCTATTGC 59.130 52.381 0.00 0.00 0.00 3.56
1791 1919 1.401931 CCTGCAATGCGAAAGGAACTG 60.402 52.381 4.25 0.00 40.86 3.16
1887 2015 2.162408 GACATCTAAACCAGCCTTGCAC 59.838 50.000 0.00 0.00 0.00 4.57
1889 2017 1.745653 GGACATCTAAACCAGCCTTGC 59.254 52.381 0.00 0.00 0.00 4.01
1979 2107 3.064324 GGCAAGCTTCCGGCACAT 61.064 61.111 9.23 0.00 44.79 3.21
2014 2142 5.079643 ACCAGGATGATAAAGTTTTGTGCT 58.920 37.500 0.00 0.00 39.69 4.40
2015 2143 5.391312 ACCAGGATGATAAAGTTTTGTGC 57.609 39.130 0.00 0.00 39.69 4.57
2017 2145 7.458397 TCACTACCAGGATGATAAAGTTTTGT 58.542 34.615 0.00 0.00 39.69 2.83
2129 2257 4.492791 TGTGCTGAATTGTCAACATCAG 57.507 40.909 19.13 19.13 41.69 2.90
2135 2263 3.189910 GCTCTGATGTGCTGAATTGTCAA 59.810 43.478 0.00 0.00 31.88 3.18
2141 2269 2.950309 GGAATGCTCTGATGTGCTGAAT 59.050 45.455 0.00 0.00 34.18 2.57
2144 2272 1.746470 TGGAATGCTCTGATGTGCTG 58.254 50.000 0.00 0.00 34.18 4.41
2145 2273 2.502142 TTGGAATGCTCTGATGTGCT 57.498 45.000 0.00 0.00 34.18 4.40
2345 5716 6.208599 TGGCTCTTTATCCTAACAAAAACAGG 59.791 38.462 0.00 0.00 0.00 4.00
2346 5717 7.084486 GTGGCTCTTTATCCTAACAAAAACAG 58.916 38.462 0.00 0.00 0.00 3.16
2405 5776 2.297033 ACATGCACAACAATGGGAGAAC 59.703 45.455 0.00 0.00 28.29 3.01
2607 5978 4.890581 GGATCAGAACTCCTAGCTTAGACA 59.109 45.833 0.00 0.00 0.00 3.41
2610 5981 6.478512 AAAGGATCAGAACTCCTAGCTTAG 57.521 41.667 0.00 0.00 42.42 2.18
2614 5985 4.502431 GCCTAAAGGATCAGAACTCCTAGC 60.502 50.000 0.00 0.00 42.42 3.42
2632 6003 7.131907 TGGTAGATGCTTAATACAAGCCTAA 57.868 36.000 6.53 0.00 42.36 2.69
2648 6019 6.917533 AGAGCAATGAAAAACTTGGTAGATG 58.082 36.000 0.00 0.00 33.55 2.90
2653 6024 6.571150 GCATAGAGAGCAATGAAAAACTTGGT 60.571 38.462 0.00 0.00 35.91 3.67
2818 6191 2.306219 ACCAACCTCCTTTCCTAGCTTC 59.694 50.000 0.00 0.00 0.00 3.86
2860 6233 2.101415 GGAGCATTTATTTCCCACCTGC 59.899 50.000 0.00 0.00 0.00 4.85
2861 6234 3.364549 TGGAGCATTTATTTCCCACCTG 58.635 45.455 0.00 0.00 0.00 4.00
3149 6558 5.029014 CGATAGAGTTACGGAAGACAACTG 58.971 45.833 0.00 0.00 39.01 3.16
3161 6570 7.667283 CAACTGATTGTGAACGATAGAGTTAC 58.333 38.462 0.00 0.00 41.38 2.50
3222 6635 7.275341 CAGAACAGCAAATGACTTGTTTTACAA 59.725 33.333 0.00 0.00 37.36 2.41
3323 6927 4.141846 ACAGAAAGTCACTCTGCAGAAGAA 60.142 41.667 18.85 2.56 43.48 2.52
3698 7308 4.879545 ACTGTTACTGGAAATTGTCGTGTT 59.120 37.500 0.00 0.00 0.00 3.32
3806 9406 6.884836 GTCCAGTAACAAATACAAGGATTCCT 59.115 38.462 0.00 0.00 40.70 3.36
3875 9475 3.057526 ACTTCTTACCAATTTGCCGCTTC 60.058 43.478 0.00 0.00 0.00 3.86
3897 9497 2.632996 ACTCGTCTCCAACCATTTCAGA 59.367 45.455 0.00 0.00 0.00 3.27
3936 9536 8.352942 TGCTTCAAAAATTTCCTTCTCTTCTAC 58.647 33.333 0.00 0.00 0.00 2.59
4000 9600 7.750229 TCTTCACCATATGAGGAAAATATGC 57.250 36.000 3.65 0.00 40.29 3.14
4613 10275 1.266178 TGATCTCCGGCTCAGTGAAA 58.734 50.000 0.00 0.00 0.00 2.69
4735 10520 3.737663 GCACAAAAGGCAACACATTCAGA 60.738 43.478 0.00 0.00 41.41 3.27
4736 10521 2.540931 GCACAAAAGGCAACACATTCAG 59.459 45.455 0.00 0.00 41.41 3.02
4737 10522 2.168106 AGCACAAAAGGCAACACATTCA 59.832 40.909 0.00 0.00 41.41 2.57
4738 10523 2.825205 AGCACAAAAGGCAACACATTC 58.175 42.857 0.00 0.00 41.41 2.67
4739 10524 2.985957 AGCACAAAAGGCAACACATT 57.014 40.000 0.00 0.00 41.41 2.71
5816 14869 2.032178 GGAAGCTGCCAATTATGTCGAC 59.968 50.000 5.59 9.11 0.00 4.20
6134 15206 3.766591 TCGGTGCATTTGTTCCCATATTT 59.233 39.130 0.00 0.00 0.00 1.40
6232 15304 4.466567 TCAGTCAAGCAATTACAACACG 57.533 40.909 0.00 0.00 0.00 4.49
6272 15344 5.067413 CGTAGGTTACCTCATGAAAGCTCTA 59.933 44.000 7.39 1.67 34.61 2.43
6273 15345 4.142138 CGTAGGTTACCTCATGAAAGCTCT 60.142 45.833 7.39 2.49 34.61 4.09
6335 15412 9.817365 CTTCACTGTTACTTTCACATCTATTTG 57.183 33.333 0.00 0.00 0.00 2.32
6344 15421 5.050363 TCGAATGCTTCACTGTTACTTTCAC 60.050 40.000 0.00 0.00 0.00 3.18
6373 15450 6.418226 CGAGCTATATCAACCTTACTGTTCAC 59.582 42.308 0.00 0.00 0.00 3.18
6409 15486 9.687210 CAACAGCGTATATCCTACTTTGTTATA 57.313 33.333 0.00 0.00 0.00 0.98
6415 15492 6.047231 GGTTCAACAGCGTATATCCTACTTT 58.953 40.000 0.00 0.00 0.00 2.66
6450 15534 0.249676 ACATCTGCACAGCCAGAGAG 59.750 55.000 0.00 0.00 44.37 3.20
6456 15540 1.198637 GAGACAAACATCTGCACAGCC 59.801 52.381 0.00 0.00 0.00 4.85
6510 15596 0.250513 AGTCACTCCCGAAAGATGGC 59.749 55.000 0.00 0.00 0.00 4.40
6525 15644 2.429610 GGCCGTGTTTCTATCCTAGTCA 59.570 50.000 0.00 0.00 0.00 3.41
6528 15647 2.959707 AGAGGCCGTGTTTCTATCCTAG 59.040 50.000 0.00 0.00 0.00 3.02
6569 15688 5.698741 TCCAATCCGATGGCTCATATTAT 57.301 39.130 0.00 0.00 40.46 1.28
6634 15757 2.748461 TTTTGCACAGAAGCGTGTAC 57.252 45.000 0.00 0.00 39.19 2.90
6657 15780 7.010645 GGCTAGAAAATAACTAGAAGTGAGTGC 59.989 40.741 0.00 0.00 39.48 4.40
6692 15815 1.078848 CCACTGCGGAGGAAGAAGG 60.079 63.158 9.36 0.00 36.56 3.46
6723 15846 6.358974 ACTCCATTAGGTTTGGGAAATTTG 57.641 37.500 0.00 0.00 34.85 2.32
6729 15852 5.318630 GTTGTAACTCCATTAGGTTTGGGA 58.681 41.667 0.00 0.00 34.85 4.37
6807 15930 3.673484 GCGCTGGAGCTTGGCAAA 61.673 61.111 0.00 0.00 39.32 3.68
6842 15966 1.561542 GAAGCCTCAGATGGGGAAGAA 59.438 52.381 1.94 0.00 0.00 2.52
6873 15997 0.608035 CCACCACTGGTTTGCCGTAT 60.608 55.000 0.00 0.00 37.67 3.06
6962 16086 2.614013 TGGGAGGGAAAGGAGGCC 60.614 66.667 0.00 0.00 0.00 5.19
6988 16115 4.554330 GCACTGCAGAAAAGAAAGAGTGAG 60.554 45.833 23.35 0.00 32.78 3.51
6989 16116 3.313526 GCACTGCAGAAAAGAAAGAGTGA 59.686 43.478 23.35 0.00 32.78 3.41
6990 16117 3.314635 AGCACTGCAGAAAAGAAAGAGTG 59.685 43.478 23.35 5.27 33.91 3.51
6991 16118 3.549794 AGCACTGCAGAAAAGAAAGAGT 58.450 40.909 23.35 0.00 0.00 3.24
6992 16119 5.629097 CATAGCACTGCAGAAAAGAAAGAG 58.371 41.667 23.35 0.00 0.00 2.85
6993 16120 4.083110 GCATAGCACTGCAGAAAAGAAAGA 60.083 41.667 23.35 0.00 41.87 2.52
6994 16121 4.164294 GCATAGCACTGCAGAAAAGAAAG 58.836 43.478 23.35 4.17 41.87 2.62
6995 16122 3.057315 GGCATAGCACTGCAGAAAAGAAA 60.057 43.478 23.35 0.00 44.12 2.52
6996 16123 2.489329 GGCATAGCACTGCAGAAAAGAA 59.511 45.455 23.35 0.45 44.12 2.52
6997 16124 2.086869 GGCATAGCACTGCAGAAAAGA 58.913 47.619 23.35 1.35 44.12 2.52
7068 16195 5.712152 AACCTTGCAAGTTTCCTTATCAG 57.288 39.130 24.35 7.46 0.00 2.90
7082 16209 5.392767 TGTTAACAACAGAAAACCTTGCA 57.607 34.783 5.64 0.00 36.25 4.08
7089 16216 5.068460 CCCAGTCCATGTTAACAACAGAAAA 59.932 40.000 13.23 0.00 45.95 2.29
7092 16219 3.497763 CCCCAGTCCATGTTAACAACAGA 60.498 47.826 13.23 6.92 45.95 3.41
7101 16228 1.580059 ATACGACCCCAGTCCATGTT 58.420 50.000 0.00 0.00 40.12 2.71
7117 16244 9.463443 AATGAATTATTGAAAGCGCCTAAATAC 57.537 29.630 2.29 0.00 0.00 1.89
7122 16249 9.677567 GAATTAATGAATTATTGAAAGCGCCTA 57.322 29.630 2.29 0.00 35.33 3.93
7162 16289 3.695830 AGTTTTGGCGGAGAGATTACA 57.304 42.857 0.00 0.00 0.00 2.41
7168 16295 4.909894 GCTAAAATAGTTTTGGCGGAGAG 58.090 43.478 7.56 0.00 44.98 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.