Multiple sequence alignment - TraesCS6B01G328700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G328700 chr6B 100.000 4564 0 0 2893 7456 578458193 578453630 0.000000e+00 8429.0
1 TraesCS6B01G328700 chr6B 100.000 2657 0 0 1 2657 578461085 578458429 0.000000e+00 4907.0
2 TraesCS6B01G328700 chr6B 98.193 166 3 0 2033 2198 95349410 95349575 2.630000e-74 291.0
3 TraesCS6B01G328700 chr6B 82.736 307 38 11 3610 3905 35068795 35069097 7.420000e-65 259.0
4 TraesCS6B01G328700 chr6B 84.177 158 10 7 1565 1722 578458621 578458479 1.010000e-28 139.0
5 TraesCS6B01G328700 chr6B 84.177 158 10 7 2465 2607 578459521 578459364 1.010000e-28 139.0
6 TraesCS6B01G328700 chr6A 96.106 2799 85 17 2893 5678 532421744 532418957 0.000000e+00 4543.0
7 TraesCS6B01G328700 chr6A 90.784 1378 78 27 5631 6971 532418979 532417614 0.000000e+00 1796.0
8 TraesCS6B01G328700 chr6A 88.993 1172 66 11 826 1991 532423322 532422208 0.000000e+00 1391.0
9 TraesCS6B01G328700 chr6A 86.402 353 40 6 34 382 594521596 594521248 5.460000e-101 379.0
10 TraesCS6B01G328700 chr6A 88.210 229 10 7 6993 7205 532417259 532417032 2.670000e-64 257.0
11 TraesCS6B01G328700 chr6A 84.810 158 14 5 2221 2378 532421497 532421350 4.660000e-32 150.0
12 TraesCS6B01G328700 chr6A 84.211 133 12 1 2329 2461 532422141 532422018 3.650000e-23 121.0
13 TraesCS6B01G328700 chr6D 92.356 2682 126 25 4331 6992 387099910 387097288 0.000000e+00 3744.0
14 TraesCS6B01G328700 chr6D 96.199 1105 37 5 2928 4030 387102077 387100976 0.000000e+00 1803.0
15 TraesCS6B01G328700 chr6D 90.517 1276 78 24 780 2036 387103685 387102434 0.000000e+00 1646.0
16 TraesCS6B01G328700 chr6D 88.706 487 31 3 6993 7456 387097109 387096624 2.330000e-159 573.0
17 TraesCS6B01G328700 chr6D 95.376 346 11 1 2197 2542 387102435 387102095 5.090000e-151 545.0
18 TraesCS6B01G328700 chr6D 80.484 579 73 9 111 679 6178367 6178915 2.500000e-109 407.0
19 TraesCS6B01G328700 chr6D 93.671 158 9 1 4029 4186 387100814 387100658 1.250000e-57 235.0
20 TraesCS6B01G328700 chr6D 95.868 121 5 0 4210 4330 387100666 387100546 5.900000e-46 196.0
21 TraesCS6B01G328700 chr6D 84.906 159 11 8 2221 2378 387101864 387101718 1.680000e-31 148.0
22 TraesCS6B01G328700 chr6D 94.444 72 4 0 1569 1640 387102168 387102097 2.200000e-20 111.0
23 TraesCS6B01G328700 chr4A 85.509 697 76 12 8 685 627975342 627976032 0.000000e+00 704.0
24 TraesCS6B01G328700 chr4D 85.463 681 67 7 11 678 418565382 418564721 0.000000e+00 680.0
25 TraesCS6B01G328700 chr5A 82.026 701 83 10 113 787 271056751 271057434 2.350000e-154 556.0
26 TraesCS6B01G328700 chr5A 87.688 333 39 1 42 372 271056625 271056957 3.260000e-103 387.0
27 TraesCS6B01G328700 chr5A 97.024 168 5 0 2034 2201 659891930 659891763 4.400000e-72 283.0
28 TraesCS6B01G328700 chr4B 83.144 617 68 10 6 607 646661826 646661231 1.420000e-146 531.0
29 TraesCS6B01G328700 chr4B 84.055 439 44 17 9 434 258739458 258739883 4.190000e-107 399.0
30 TraesCS6B01G328700 chr4B 86.667 285 36 2 41 323 87710739 87710455 1.560000e-81 315.0
31 TraesCS6B01G328700 chr4B 95.580 181 6 2 2031 2209 338425951 338425771 9.470000e-74 289.0
32 TraesCS6B01G328700 chr4B 97.024 168 5 0 2035 2202 518678141 518678308 4.400000e-72 283.0
33 TraesCS6B01G328700 chr1B 83.610 482 56 12 6994 7454 353950463 353949984 1.490000e-116 431.0
34 TraesCS6B01G328700 chr1B 81.857 474 60 13 6994 7444 416668216 416667746 7.060000e-100 375.0
35 TraesCS6B01G328700 chr1B 81.314 487 62 19 6993 7454 416751034 416750552 1.180000e-97 368.0
36 TraesCS6B01G328700 chr1B 83.596 317 37 11 3613 3918 678222855 678222543 4.400000e-72 283.0
37 TraesCS6B01G328700 chr7D 84.017 463 45 8 6993 7431 619531629 619532086 1.160000e-112 418.0
38 TraesCS6B01G328700 chr7D 83.221 298 39 5 390 678 527737426 527737131 5.740000e-66 263.0
39 TraesCS6B01G328700 chr5D 88.286 350 38 3 7109 7456 549353435 549353087 4.160000e-112 416.0
40 TraesCS6B01G328700 chr5D 97.093 172 4 1 2032 2202 198477555 198477384 9.470000e-74 289.0
41 TraesCS6B01G328700 chr2B 82.744 481 59 15 6994 7452 208617209 208617687 2.500000e-109 407.0
42 TraesCS6B01G328700 chr2B 82.581 310 39 11 3613 3911 738167526 738167221 7.420000e-65 259.0
43 TraesCS6B01G328700 chr1D 82.231 484 57 16 6994 7454 258959192 258959669 2.520000e-104 390.0
44 TraesCS6B01G328700 chr5B 85.753 365 49 3 7092 7454 381387377 381387014 4.220000e-102 383.0
45 TraesCS6B01G328700 chr5B 83.424 368 55 5 9 372 611517823 611517458 3.330000e-88 337.0
46 TraesCS6B01G328700 chr5B 84.615 260 37 3 390 647 557282215 557282473 9.600000e-64 255.0
47 TraesCS6B01G328700 chr3D 84.352 409 43 11 390 783 420010039 420010441 1.520000e-101 381.0
48 TraesCS6B01G328700 chr3D 76.923 715 92 39 3613 4292 572629672 572628996 9.270000e-89 339.0
49 TraesCS6B01G328700 chr3D 96.023 176 6 1 2025 2200 604896774 604896948 1.220000e-72 285.0
50 TraesCS6B01G328700 chr2A 79.825 570 71 15 220 776 543185003 543185541 7.060000e-100 375.0
51 TraesCS6B01G328700 chr2A 82.410 307 39 10 3610 3905 24023803 24024105 3.450000e-63 254.0
52 TraesCS6B01G328700 chr2D 82.394 426 44 11 390 786 75652369 75651946 7.160000e-90 342.0
53 TraesCS6B01G328700 chr2D 98.171 164 3 0 2035 2198 498643778 498643941 3.400000e-73 287.0
54 TraesCS6B01G328700 chr1A 84.936 312 41 5 11 318 297256451 297256760 2.020000e-80 311.0
55 TraesCS6B01G328700 chr1A 86.275 255 34 1 151 404 297256193 297256447 7.370000e-70 276.0
56 TraesCS6B01G328700 chr1A 83.793 290 45 2 390 679 420451342 420451629 2.650000e-69 274.0
57 TraesCS6B01G328700 chr1A 75.333 300 50 17 394 679 581040808 581041097 1.020000e-23 122.0
58 TraesCS6B01G328700 chr3B 97.041 169 4 1 2032 2199 52744110 52743942 4.400000e-72 283.0
59 TraesCS6B01G328700 chr7B 95.455 176 7 1 2035 2209 588875746 588875571 5.700000e-71 279.0
60 TraesCS6B01G328700 chr7B 82.792 308 36 14 3610 3905 289510931 289511233 7.420000e-65 259.0
61 TraesCS6B01G328700 chr7B 88.333 60 4 3 1996 2054 186814179 186814122 1.340000e-07 69.4
62 TraesCS6B01G328700 chr7A 82.258 310 40 10 3613 3911 536152080 536151775 3.450000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G328700 chr6B 578453630 578461085 7455 True 3403.500000 8429 92.088500 1 7456 4 chr6B.!!$R1 7455
1 TraesCS6B01G328700 chr6A 532417032 532423322 6290 True 1376.333333 4543 88.852333 826 7205 6 chr6A.!!$R2 6379
2 TraesCS6B01G328700 chr6D 387096624 387103685 7061 True 1000.111111 3744 92.449222 780 7456 9 chr6D.!!$R1 6676
3 TraesCS6B01G328700 chr6D 6178367 6178915 548 False 407.000000 407 80.484000 111 679 1 chr6D.!!$F1 568
4 TraesCS6B01G328700 chr4A 627975342 627976032 690 False 704.000000 704 85.509000 8 685 1 chr4A.!!$F1 677
5 TraesCS6B01G328700 chr4D 418564721 418565382 661 True 680.000000 680 85.463000 11 678 1 chr4D.!!$R1 667
6 TraesCS6B01G328700 chr5A 271056625 271057434 809 False 471.500000 556 84.857000 42 787 2 chr5A.!!$F1 745
7 TraesCS6B01G328700 chr4B 646661231 646661826 595 True 531.000000 531 83.144000 6 607 1 chr4B.!!$R3 601
8 TraesCS6B01G328700 chr3D 572628996 572629672 676 True 339.000000 339 76.923000 3613 4292 1 chr3D.!!$R1 679
9 TraesCS6B01G328700 chr2A 543185003 543185541 538 False 375.000000 375 79.825000 220 776 1 chr2A.!!$F2 556
10 TraesCS6B01G328700 chr1A 297256193 297256760 567 False 293.500000 311 85.605500 11 404 2 chr1A.!!$F3 393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 1033 0.028902 CATGCGTCGACCGTCTGATA 59.971 55.0 10.58 0.00 39.32 2.15 F
1435 1797 0.179111 CTCCCGTGAATCGCTGCTTA 60.179 55.0 0.00 0.00 38.35 3.09 F
1541 1914 0.318699 CGATCGCCTCGGATGCTTAA 60.319 55.0 0.26 0.00 43.82 1.85 F
2465 2880 0.750850 ACATTAGATCACCCCGACGG 59.249 55.0 6.99 6.99 37.81 4.79 F
2502 2917 0.849094 TATGGAGTGGGGGCCAGTTT 60.849 55.0 4.39 0.00 37.30 2.66 F
4110 4748 0.634465 AACAACTGGGAAAGGGTGGT 59.366 50.0 0.00 0.00 0.00 4.16 F
4893 6170 0.249238 CGAGAGCTGTGCACCCTATC 60.249 60.0 15.69 15.49 0.00 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2295 0.250338 GGTGACGGGTCAAAGCTTCT 60.250 55.000 0.00 0.0 41.85 2.85 R
2254 2629 0.928922 CTGATCACTGATGACTGCGC 59.071 55.000 0.00 0.0 37.79 6.09 R
3015 3454 2.781174 TGGGACACCTTACTCCAAAAGT 59.219 45.455 0.00 0.0 38.76 2.66 R
3676 4117 0.179048 CACAGTCCTGTCCAACAGCA 60.179 55.000 0.00 0.0 44.63 4.41 R
4362 5638 0.892755 CCTGGTAGCGTGGAGTAACA 59.107 55.000 0.00 0.0 0.00 2.41 R
5757 7066 0.314935 CCATGATTATTGCCCGCACC 59.685 55.000 0.00 0.0 0.00 5.01 R
6527 7851 0.036875 CAAGGTCCAAGGTCCAGGTC 59.963 60.000 5.21 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 340 1.375268 GGATGCGAGCTGATAGCCC 60.375 63.158 0.00 0.00 43.77 5.19
105 356 2.540383 AGCCCTCTGATGTAGTGTTCA 58.460 47.619 0.00 0.00 0.00 3.18
109 360 2.094494 CCTCTGATGTAGTGTTCACGCT 60.094 50.000 0.00 0.00 40.27 5.07
184 441 2.093890 TGCATGCCCACTCATTACTTG 58.906 47.619 16.68 0.00 0.00 3.16
190 447 1.382522 CCACTCATTACTTGCCGCAT 58.617 50.000 0.00 0.00 0.00 4.73
224 534 3.023119 TGCAGAAACAAGACCACATGTT 58.977 40.909 0.00 0.00 39.17 2.71
243 553 0.242825 TCACTCGTTACTTCCCGCAG 59.757 55.000 0.00 0.00 0.00 5.18
246 556 1.078759 CTCGTTACTTCCCGCAGCAG 61.079 60.000 0.00 0.00 0.00 4.24
294 605 1.590147 CCCACTCGCTACTTTCCGT 59.410 57.895 0.00 0.00 0.00 4.69
295 606 0.736325 CCCACTCGCTACTTTCCGTG 60.736 60.000 0.00 0.00 0.00 4.94
329 640 0.593128 GCAGAAACAAGACCGCATGT 59.407 50.000 0.00 0.00 0.00 3.21
330 641 1.001378 GCAGAAACAAGACCGCATGTT 60.001 47.619 0.00 0.00 41.31 2.71
380 691 1.919918 GTTGCAGAAACACACTGTTGC 59.080 47.619 0.00 0.00 40.14 4.17
385 696 3.688272 CAGAAACACACTGTTGCAGAAG 58.312 45.455 2.91 0.00 40.14 2.85
461 773 3.833732 AGCGATCTCTGAACCATACCTA 58.166 45.455 0.00 0.00 0.00 3.08
500 813 4.021925 GCCGACCCTGAGCCAGTT 62.022 66.667 2.18 0.00 0.00 3.16
503 816 1.071471 CGACCCTGAGCCAGTTGTT 59.929 57.895 2.18 0.00 0.00 2.83
508 821 1.546323 CCCTGAGCCAGTTGTTGATGT 60.546 52.381 2.18 0.00 0.00 3.06
524 837 2.004017 GATGTCACCGCGTTGGATAAA 58.996 47.619 3.08 0.00 42.00 1.40
590 921 1.681666 CTCACACTCCCAGCCACAT 59.318 57.895 0.00 0.00 0.00 3.21
617 948 1.522569 GCTACTGCGGGATGGAACT 59.477 57.895 0.00 0.00 0.00 3.01
649 980 0.991146 TCCAGTTGCAGGAATGGCTA 59.009 50.000 0.00 0.00 32.63 3.93
667 998 3.274288 GCTATCCTGAAACAAGAGGTGG 58.726 50.000 0.00 0.00 0.00 4.61
675 1006 0.550914 AACAAGAGGTGGGTTGCAGA 59.449 50.000 0.00 0.00 0.00 4.26
679 1010 2.629617 CAAGAGGTGGGTTGCAGAAAAT 59.370 45.455 0.00 0.00 0.00 1.82
685 1016 3.763897 GGTGGGTTGCAGAAAATAGACAT 59.236 43.478 0.00 0.00 0.00 3.06
688 1019 3.429085 GGTTGCAGAAAATAGACATGCG 58.571 45.455 0.00 0.00 39.74 4.73
698 1029 2.178521 GACATGCGTCGACCGTCT 59.821 61.111 10.58 0.00 39.32 4.18
699 1030 2.126463 ACATGCGTCGACCGTCTG 60.126 61.111 10.58 5.32 39.32 3.51
701 1032 1.226688 CATGCGTCGACCGTCTGAT 60.227 57.895 10.58 0.00 39.32 2.90
702 1033 0.028902 CATGCGTCGACCGTCTGATA 59.971 55.000 10.58 0.00 39.32 2.15
706 1055 1.855223 GCGTCGACCGTCTGATAAGAC 60.855 57.143 10.58 0.00 39.32 3.01
708 1057 2.031807 CGTCGACCGTCTGATAAGACAT 59.968 50.000 10.58 0.00 38.65 3.06
726 1080 0.955178 ATAGATCGGACAGCCACGAG 59.045 55.000 0.00 0.00 42.89 4.18
778 1132 6.384224 CGGTAAAAGGTAAGTTTTTCCCATC 58.616 40.000 0.00 0.00 34.82 3.51
779 1133 6.016108 CGGTAAAAGGTAAGTTTTTCCCATCA 60.016 38.462 0.00 0.00 34.82 3.07
782 1136 9.772973 GTAAAAGGTAAGTTTTTCCCATCATTT 57.227 29.630 0.00 0.00 31.96 2.32
787 1141 8.758829 AGGTAAGTTTTTCCCATCATTTATTCC 58.241 33.333 0.00 0.00 0.00 3.01
788 1142 8.758829 GGTAAGTTTTTCCCATCATTTATTCCT 58.241 33.333 0.00 0.00 0.00 3.36
817 1171 4.371855 TTTACTATCCACACGAGCTCAG 57.628 45.455 15.40 8.11 0.00 3.35
818 1172 1.107114 ACTATCCACACGAGCTCAGG 58.893 55.000 15.40 9.68 0.00 3.86
848 1202 3.443681 ACTTCCAAAGTCACCAACACTTG 59.556 43.478 0.00 0.00 37.02 3.16
877 1232 4.751600 AGTAACCAAAACAAGCCTACGTAC 59.248 41.667 0.00 0.00 0.00 3.67
901 1263 6.918022 ACAAGCATTAACAAAAGTCAAGTAGC 59.082 34.615 0.00 0.00 0.00 3.58
931 1293 4.331168 GCTGGATTAGTCGATTATCATGCC 59.669 45.833 0.00 0.00 0.00 4.40
960 1322 6.446781 TTTTTAATCACAACACGTAACCCA 57.553 33.333 0.00 0.00 0.00 4.51
961 1323 6.636562 TTTTAATCACAACACGTAACCCAT 57.363 33.333 0.00 0.00 0.00 4.00
962 1324 7.741027 TTTTAATCACAACACGTAACCCATA 57.259 32.000 0.00 0.00 0.00 2.74
963 1325 7.741027 TTTAATCACAACACGTAACCCATAA 57.259 32.000 0.00 0.00 0.00 1.90
964 1326 5.873179 AATCACAACACGTAACCCATAAG 57.127 39.130 0.00 0.00 0.00 1.73
965 1327 3.068560 TCACAACACGTAACCCATAAGC 58.931 45.455 0.00 0.00 0.00 3.09
966 1328 2.160813 CACAACACGTAACCCATAAGCC 59.839 50.000 0.00 0.00 0.00 4.35
1000 1362 1.346365 CGTCACGTAATCCCACACTG 58.654 55.000 0.00 0.00 0.00 3.66
1007 1369 4.625742 CACGTAATCCCACACTGACTTTAG 59.374 45.833 0.00 0.00 0.00 1.85
1089 1451 6.473455 ACATCGCAAAACAGAAAGAAAGAAAG 59.527 34.615 0.00 0.00 0.00 2.62
1389 1751 1.134491 CAAGACCGTAATCCCCCTCAC 60.134 57.143 0.00 0.00 0.00 3.51
1390 1752 0.690077 AGACCGTAATCCCCCTCACC 60.690 60.000 0.00 0.00 0.00 4.02
1435 1797 0.179111 CTCCCGTGAATCGCTGCTTA 60.179 55.000 0.00 0.00 38.35 3.09
1447 1818 2.019951 CTGCTTACGTCACGCGGTT 61.020 57.895 12.47 0.00 46.52 4.44
1503 1876 4.368565 AGGATAGGATCTACGTGCTGTA 57.631 45.455 0.00 0.00 0.00 2.74
1541 1914 0.318699 CGATCGCCTCGGATGCTTAA 60.319 55.000 0.26 0.00 43.82 1.85
1562 1935 1.300542 CCATTGCGTTTTGGCCGTT 60.301 52.632 0.00 0.00 0.00 4.44
1567 1940 2.234335 GCGTTTTGGCCGTTTGGTG 61.234 57.895 0.00 0.00 37.67 4.17
1584 1957 1.379710 TGCCGATTTGGGTGGGATG 60.380 57.895 0.00 0.00 38.63 3.51
1600 1973 4.918360 TGTGGAGTGGGGGCCAGT 62.918 66.667 4.39 0.00 40.30 4.00
1723 2096 8.116026 GGAATGGGTATGGATCTTAATTATGGT 58.884 37.037 0.00 0.00 0.00 3.55
1802 2175 2.292016 TGTTTGTTGCGACCACATTAGG 59.708 45.455 0.45 0.00 0.00 2.69
1823 2196 6.259550 AGGCTGTTGTAGATCACATTTTTC 57.740 37.500 0.00 0.00 36.90 2.29
1826 2199 6.128391 GGCTGTTGTAGATCACATTTTTCGTA 60.128 38.462 0.00 0.00 36.90 3.43
1831 2204 3.934068 AGATCACATTTTTCGTACGGGT 58.066 40.909 16.52 1.88 0.00 5.28
1832 2205 3.682858 AGATCACATTTTTCGTACGGGTG 59.317 43.478 16.52 13.49 0.00 4.61
1854 2227 4.202295 TGAAGCTCTGCTCTCTTTTCTGAA 60.202 41.667 0.00 0.00 38.25 3.02
1919 2293 6.540438 TCAGTCCCACTACTAAACATTAGG 57.460 41.667 2.53 0.00 0.00 2.69
1921 2295 6.727231 TCAGTCCCACTACTAAACATTAGGAA 59.273 38.462 2.53 0.00 0.00 3.36
1930 2304 9.220767 ACTACTAAACATTAGGAAGAAGCTTTG 57.779 33.333 0.00 0.00 0.00 2.77
1933 2307 5.966742 AACATTAGGAAGAAGCTTTGACC 57.033 39.130 0.00 4.53 0.00 4.02
1941 2315 1.566018 GAAGCTTTGACCCGTCACCG 61.566 60.000 0.00 0.00 39.66 4.94
1991 2366 5.093457 GTCATCACTTTCACATTGCTGATG 58.907 41.667 0.00 0.00 41.71 3.07
1996 2371 4.748102 CACTTTCACATTGCTGATGCTTTT 59.252 37.500 1.27 0.00 39.47 2.27
2020 2395 3.761995 CGTGAGTACGCAATCGCA 58.238 55.556 0.00 0.00 44.11 5.10
2028 2403 3.575630 AGTACGCAATCGCATACCATAG 58.424 45.455 0.00 0.00 39.84 2.23
2036 2411 6.478588 GCAATCGCATACCATAGCTTTATAC 58.521 40.000 0.00 0.00 38.36 1.47
2037 2412 6.313905 GCAATCGCATACCATAGCTTTATACT 59.686 38.462 0.00 0.00 38.36 2.12
2038 2413 7.464710 GCAATCGCATACCATAGCTTTATACTC 60.465 40.741 0.00 0.00 38.36 2.59
2039 2414 5.962433 TCGCATACCATAGCTTTATACTCC 58.038 41.667 0.00 0.00 0.00 3.85
2040 2415 5.105473 TCGCATACCATAGCTTTATACTCCC 60.105 44.000 0.00 0.00 0.00 4.30
2041 2416 5.105310 CGCATACCATAGCTTTATACTCCCT 60.105 44.000 0.00 0.00 0.00 4.20
2042 2417 6.342111 GCATACCATAGCTTTATACTCCCTC 58.658 44.000 0.00 0.00 0.00 4.30
2043 2418 6.630638 GCATACCATAGCTTTATACTCCCTCC 60.631 46.154 0.00 0.00 0.00 4.30
2044 2419 3.833070 ACCATAGCTTTATACTCCCTCCG 59.167 47.826 0.00 0.00 0.00 4.63
2045 2420 3.833070 CCATAGCTTTATACTCCCTCCGT 59.167 47.826 0.00 0.00 0.00 4.69
2046 2421 4.283722 CCATAGCTTTATACTCCCTCCGTT 59.716 45.833 0.00 0.00 0.00 4.44
2047 2422 5.471257 CATAGCTTTATACTCCCTCCGTTC 58.529 45.833 0.00 0.00 0.00 3.95
2048 2423 2.699321 AGCTTTATACTCCCTCCGTTCC 59.301 50.000 0.00 0.00 0.00 3.62
2049 2424 2.224233 GCTTTATACTCCCTCCGTTCCC 60.224 54.545 0.00 0.00 0.00 3.97
2050 2425 2.852714 TTATACTCCCTCCGTTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2051 2426 2.852714 TATACTCCCTCCGTTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2052 2427 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2053 2428 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
2054 2429 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2055 2430 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2056 2431 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
2057 2432 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
2058 2433 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
2059 2434 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
2060 2435 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
2061 2436 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
2062 2437 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
2063 2438 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
2064 2439 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
2065 2440 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
2066 2441 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
2067 2442 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
2068 2443 7.335924 CCGTTCCCAAATATTTGTCTTTCTAGA 59.664 37.037 23.24 7.17 36.45 2.43
2069 2444 8.391106 CGTTCCCAAATATTTGTCTTTCTAGAG 58.609 37.037 23.24 7.00 36.45 2.43
2070 2445 9.449719 GTTCCCAAATATTTGTCTTTCTAGAGA 57.550 33.333 23.24 5.94 36.45 3.10
2081 2456 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2082 2457 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2083 2458 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2084 2459 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2085 2460 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2086 2461 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2087 2462 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2088 2463 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2089 2464 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2091 2466 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2092 2467 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2093 2468 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2094 2469 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2095 2470 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
2096 2471 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2097 2472 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2098 2473 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2099 2474 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2100 2475 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2101 2476 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2102 2477 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2103 2478 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2104 2479 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
2105 2480 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
2106 2481 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
2107 2482 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2108 2483 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2109 2484 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2110 2485 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2111 2486 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2112 2487 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2113 2488 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2114 2489 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2115 2490 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
2116 2491 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
2117 2492 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
2118 2493 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
2119 2494 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
2120 2495 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
2153 2528 2.004583 ACATCCGTATGTTGTGTCCG 57.995 50.000 0.00 0.00 44.07 4.79
2154 2529 1.274167 ACATCCGTATGTTGTGTCCGT 59.726 47.619 0.00 0.00 44.07 4.69
2155 2530 2.289195 ACATCCGTATGTTGTGTCCGTT 60.289 45.455 0.00 0.00 44.07 4.44
2156 2531 2.529780 TCCGTATGTTGTGTCCGTTT 57.470 45.000 0.00 0.00 0.00 3.60
2157 2532 2.136728 TCCGTATGTTGTGTCCGTTTG 58.863 47.619 0.00 0.00 0.00 2.93
2158 2533 2.136728 CCGTATGTTGTGTCCGTTTGA 58.863 47.619 0.00 0.00 0.00 2.69
2159 2534 2.544686 CCGTATGTTGTGTCCGTTTGAA 59.455 45.455 0.00 0.00 0.00 2.69
2160 2535 3.002451 CCGTATGTTGTGTCCGTTTGAAA 59.998 43.478 0.00 0.00 0.00 2.69
2161 2536 4.319911 CCGTATGTTGTGTCCGTTTGAAAT 60.320 41.667 0.00 0.00 0.00 2.17
2162 2537 4.610951 CGTATGTTGTGTCCGTTTGAAATG 59.389 41.667 0.00 0.00 0.00 2.32
2163 2538 2.803451 TGTTGTGTCCGTTTGAAATGC 58.197 42.857 0.00 0.00 0.00 3.56
2164 2539 2.124122 GTTGTGTCCGTTTGAAATGCC 58.876 47.619 0.00 0.00 0.00 4.40
2165 2540 1.686355 TGTGTCCGTTTGAAATGCCT 58.314 45.000 0.00 0.00 0.00 4.75
2166 2541 2.852449 TGTGTCCGTTTGAAATGCCTA 58.148 42.857 0.00 0.00 0.00 3.93
2167 2542 2.811431 TGTGTCCGTTTGAAATGCCTAG 59.189 45.455 0.00 0.00 0.00 3.02
2168 2543 3.071479 GTGTCCGTTTGAAATGCCTAGA 58.929 45.455 0.00 0.00 0.00 2.43
2169 2544 3.500680 GTGTCCGTTTGAAATGCCTAGAA 59.499 43.478 0.00 0.00 0.00 2.10
2170 2545 4.023536 GTGTCCGTTTGAAATGCCTAGAAA 60.024 41.667 0.00 0.00 0.00 2.52
2171 2546 4.215399 TGTCCGTTTGAAATGCCTAGAAAG 59.785 41.667 0.00 0.00 0.00 2.62
2172 2547 4.454504 GTCCGTTTGAAATGCCTAGAAAGA 59.545 41.667 0.00 0.00 0.00 2.52
2173 2548 4.454504 TCCGTTTGAAATGCCTAGAAAGAC 59.545 41.667 0.00 0.00 0.00 3.01
2174 2549 4.215399 CCGTTTGAAATGCCTAGAAAGACA 59.785 41.667 0.00 0.00 0.00 3.41
2175 2550 5.278266 CCGTTTGAAATGCCTAGAAAGACAA 60.278 40.000 0.00 0.00 0.00 3.18
2176 2551 6.205784 CGTTTGAAATGCCTAGAAAGACAAA 58.794 36.000 0.00 0.00 0.00 2.83
2177 2552 6.863126 CGTTTGAAATGCCTAGAAAGACAAAT 59.137 34.615 0.00 0.00 0.00 2.32
2178 2553 8.020819 CGTTTGAAATGCCTAGAAAGACAAATA 58.979 33.333 0.00 0.00 0.00 1.40
2179 2554 9.860898 GTTTGAAATGCCTAGAAAGACAAATAT 57.139 29.630 0.00 0.00 0.00 1.28
2182 2557 9.859427 TGAAATGCCTAGAAAGACAAATATTTG 57.141 29.630 23.60 23.60 43.62 2.32
2183 2558 9.305925 GAAATGCCTAGAAAGACAAATATTTGG 57.694 33.333 27.43 12.85 42.34 3.28
2184 2559 6.773976 TGCCTAGAAAGACAAATATTTGGG 57.226 37.500 27.43 18.18 42.34 4.12
2185 2560 6.489603 TGCCTAGAAAGACAAATATTTGGGA 58.510 36.000 27.43 8.88 42.34 4.37
2186 2561 6.951198 TGCCTAGAAAGACAAATATTTGGGAA 59.049 34.615 27.43 11.57 42.34 3.97
2187 2562 7.093945 TGCCTAGAAAGACAAATATTTGGGAAC 60.094 37.037 27.43 16.80 42.34 3.62
2188 2563 7.472543 CCTAGAAAGACAAATATTTGGGAACG 58.527 38.462 27.43 6.31 42.34 3.95
2189 2564 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
2190 2565 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
2191 2566 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
2192 2567 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
2193 2568 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
2194 2569 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
2195 2570 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
2196 2571 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2197 2572 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2217 2592 7.202011 GGGAGTAGAAGGCAGAGATAATTACAA 60.202 40.741 0.00 0.00 0.00 2.41
2245 2620 1.405463 TGCTGATACTACCACTCTGCG 59.595 52.381 0.00 0.00 36.86 5.18
2254 2629 1.669115 CCACTCTGCGTTGGACCTG 60.669 63.158 0.00 0.00 0.00 4.00
2382 2757 6.369615 CCTTGGATGCTGGAAAAGTTAATTTG 59.630 38.462 0.00 0.00 0.00 2.32
2389 2764 3.385111 TGGAAAAGTTAATTTGGCGGTGT 59.615 39.130 0.00 0.00 0.00 4.16
2400 2775 2.824041 GCGGTGTGCATGGGTAGG 60.824 66.667 0.00 0.00 45.45 3.18
2401 2776 2.986290 CGGTGTGCATGGGTAGGA 59.014 61.111 0.00 0.00 0.00 2.94
2402 2777 1.526887 CGGTGTGCATGGGTAGGAT 59.473 57.895 0.00 0.00 0.00 3.24
2465 2880 0.750850 ACATTAGATCACCCCGACGG 59.249 55.000 6.99 6.99 37.81 4.79
2502 2917 0.849094 TATGGAGTGGGGGCCAGTTT 60.849 55.000 4.39 0.00 37.30 2.66
2587 3025 6.496565 TGGTTCACATTAGATTCATTGGGTTT 59.503 34.615 0.00 0.00 0.00 3.27
2610 3048 9.574516 GTTTGGGATGGATCTTAATTATGTAGT 57.425 33.333 0.00 0.00 0.00 2.73
2613 3051 7.739444 TGGGATGGATCTTAATTATGTAGTCCT 59.261 37.037 14.71 0.00 0.00 3.85
2615 3053 8.043710 GGATGGATCTTAATTATGTAGTCCTGG 58.956 40.741 14.71 0.00 0.00 4.45
2642 3080 7.477144 TGTGAATTAAGACAGTAATATGGCG 57.523 36.000 0.00 0.00 31.55 5.69
2645 3083 2.930826 AAGACAGTAATATGGCGGGG 57.069 50.000 0.00 0.00 31.55 5.73
2647 3085 2.124411 AGACAGTAATATGGCGGGGTT 58.876 47.619 0.00 0.00 31.55 4.11
2648 3086 2.508300 AGACAGTAATATGGCGGGGTTT 59.492 45.455 0.00 0.00 31.55 3.27
2649 3087 3.053917 AGACAGTAATATGGCGGGGTTTT 60.054 43.478 0.00 0.00 31.55 2.43
2650 3088 3.697542 GACAGTAATATGGCGGGGTTTTT 59.302 43.478 0.00 0.00 0.00 1.94
2917 3355 5.398603 AGAATTTGTTTGTTGTGACCACA 57.601 34.783 0.00 0.00 39.98 4.17
3015 3454 6.149308 CACCTGCTTGAAACAATGTACATCTA 59.851 38.462 9.23 0.00 0.00 1.98
3163 3602 2.099141 TTGCTGATACCACTCTGCAC 57.901 50.000 5.32 0.00 45.86 4.57
3177 3616 1.273606 TCTGCACTGAACCTACTCAGC 59.726 52.381 0.56 0.00 45.72 4.26
3199 3639 2.897271 TAGTTCCACCAATGGCATGT 57.103 45.000 0.00 0.00 46.80 3.21
3200 3640 1.259609 AGTTCCACCAATGGCATGTG 58.740 50.000 0.00 5.82 46.80 3.21
3238 3678 7.675962 TTTCACGTAACATTATGGCTAACTT 57.324 32.000 0.00 0.00 0.00 2.66
3408 3848 4.688021 GACCTCTCGAGACAATGCTTAAT 58.312 43.478 12.08 0.00 0.00 1.40
3676 4117 0.883833 CTGAGCGAAAAATGGGTGCT 59.116 50.000 0.00 0.00 38.89 4.40
3918 4371 7.990886 CCTTGCCTACTTTCCACATATTTAGTA 59.009 37.037 0.00 0.00 0.00 1.82
4082 4709 7.921786 TTTGTCTTGTTCTACATATCTTGGG 57.078 36.000 0.00 0.00 0.00 4.12
4110 4748 0.634465 AACAACTGGGAAAGGGTGGT 59.366 50.000 0.00 0.00 0.00 4.16
4111 4749 0.634465 ACAACTGGGAAAGGGTGGTT 59.366 50.000 0.00 0.00 0.00 3.67
4112 4750 1.854280 ACAACTGGGAAAGGGTGGTTA 59.146 47.619 0.00 0.00 0.00 2.85
4362 5638 2.025981 TCAGTCCAACATTGCTAGCCAT 60.026 45.455 13.29 3.33 0.00 4.40
4424 5700 4.119862 TCGCAAAGTCTAGCATCATAACC 58.880 43.478 0.00 0.00 0.00 2.85
4523 5799 6.931840 GGACTGATAAGGGAAGATGACATTAC 59.068 42.308 0.00 0.00 0.00 1.89
4893 6170 0.249238 CGAGAGCTGTGCACCCTATC 60.249 60.000 15.69 15.49 0.00 2.08
5181 6460 3.707316 AGGCAGTACTTCTGAGACATCT 58.293 45.455 0.00 0.00 46.27 2.90
5202 6481 5.898174 TCTTTTTCAGTCGAGTCACTAACA 58.102 37.500 0.00 0.00 0.00 2.41
5340 6619 3.194005 TGAAGATTTCCGAGGGTATGC 57.806 47.619 0.00 0.00 0.00 3.14
5434 6713 7.615757 TCCAGTACATATCAGGATACCATGTAG 59.384 40.741 0.00 0.00 37.17 2.74
5447 6726 6.202954 GGATACCATGTAGTTGACTATGTTGC 59.797 42.308 0.00 0.00 0.00 4.17
5577 6860 2.505819 TCAGGAGGTTCCCTTTGCTATC 59.494 50.000 0.00 0.00 37.19 2.08
5643 6926 1.623311 AGCATGCCCCTTGTTAAAACC 59.377 47.619 15.66 0.00 0.00 3.27
5683 6991 6.324042 TGTTAAAACCGGAAAAGAACAACTC 58.676 36.000 9.46 0.00 0.00 3.01
5710 7019 8.279800 CCATGAAAAACGGAAAAATAAAAGGTC 58.720 33.333 0.00 0.00 0.00 3.85
5742 7051 3.591527 TGGGTGGAAGGTAATCATCAACT 59.408 43.478 0.00 0.00 0.00 3.16
5757 7066 1.699634 TCAACTGGGAAGACTTGGGAG 59.300 52.381 0.00 0.00 0.00 4.30
5761 7070 1.002011 GGGAAGACTTGGGAGGTGC 60.002 63.158 0.00 0.00 0.00 5.01
5813 7122 5.624159 TCAACCTTAATCATGCCTCCTATG 58.376 41.667 0.00 0.00 0.00 2.23
5823 7132 2.481289 GCCTCCTATGGCCTGATTAC 57.519 55.000 3.32 0.00 46.82 1.89
6043 7353 4.860022 ACATATCTTTTGTCCCCCTCTTG 58.140 43.478 0.00 0.00 0.00 3.02
6044 7354 4.292306 ACATATCTTTTGTCCCCCTCTTGT 59.708 41.667 0.00 0.00 0.00 3.16
6045 7355 2.656947 TCTTTTGTCCCCCTCTTGTG 57.343 50.000 0.00 0.00 0.00 3.33
6046 7356 0.961753 CTTTTGTCCCCCTCTTGTGC 59.038 55.000 0.00 0.00 0.00 4.57
6048 7358 2.690653 TTTGTCCCCCTCTTGTGCCG 62.691 60.000 0.00 0.00 0.00 5.69
6049 7359 3.319198 GTCCCCCTCTTGTGCCGA 61.319 66.667 0.00 0.00 0.00 5.54
6050 7360 3.319198 TCCCCCTCTTGTGCCGAC 61.319 66.667 0.00 0.00 0.00 4.79
6051 7361 4.760047 CCCCCTCTTGTGCCGACG 62.760 72.222 0.00 0.00 0.00 5.12
6052 7362 4.003788 CCCCTCTTGTGCCGACGT 62.004 66.667 0.00 0.00 0.00 4.34
6053 7363 2.738521 CCCTCTTGTGCCGACGTG 60.739 66.667 0.00 0.00 0.00 4.49
6057 7367 0.319211 CTCTTGTGCCGACGTGGTTA 60.319 55.000 0.00 0.00 41.21 2.85
6058 7368 0.104487 TCTTGTGCCGACGTGGTTAA 59.896 50.000 0.00 0.00 41.21 2.01
6059 7369 1.153353 CTTGTGCCGACGTGGTTAAT 58.847 50.000 0.00 0.00 41.21 1.40
6273 7585 2.125552 TCTCCAACTGATGCCGCG 60.126 61.111 0.00 0.00 0.00 6.46
6345 7662 2.866523 ATCCCCTCACGACGCCCTTA 62.867 60.000 0.00 0.00 0.00 2.69
6386 7703 2.355716 CCACTTGTGATTACACCCGGAT 60.356 50.000 0.73 0.00 45.40 4.18
6387 7704 3.343617 CACTTGTGATTACACCCGGATT 58.656 45.455 0.73 0.00 45.40 3.01
6390 7707 5.064707 CACTTGTGATTACACCCGGATTTAG 59.935 44.000 0.73 0.00 45.40 1.85
6400 7717 3.499157 CACCCGGATTTAGAAACGAAACA 59.501 43.478 0.73 0.00 0.00 2.83
6432 7753 1.576421 GAACCTTTGCTGCACCTCG 59.424 57.895 0.00 0.00 0.00 4.63
6446 7770 3.119884 TGCACCTCGTTCAATAAAGCATG 60.120 43.478 0.00 0.00 0.00 4.06
6447 7771 3.126858 GCACCTCGTTCAATAAAGCATGA 59.873 43.478 0.00 0.00 0.00 3.07
6450 7774 5.065090 CACCTCGTTCAATAAAGCATGATGA 59.935 40.000 0.00 0.00 0.00 2.92
6469 7793 6.851609 TGATGATGGTACGAAATTCCTTTTG 58.148 36.000 0.00 0.00 32.77 2.44
6495 7819 2.590575 CCGTGTGGTTCAAGGCGT 60.591 61.111 0.00 0.00 38.68 5.68
6499 7823 0.814010 GTGTGGTTCAAGGCGTGACT 60.814 55.000 1.62 0.00 35.39 3.41
6525 7849 3.368571 GGACGACGTTCCCGGTCT 61.369 66.667 0.13 0.00 38.78 3.85
6526 7850 2.126580 GACGACGTTCCCGGTCTG 60.127 66.667 0.13 0.00 38.78 3.51
6527 7851 3.621892 GACGACGTTCCCGGTCTGG 62.622 68.421 0.13 0.00 38.78 3.86
6528 7852 3.367743 CGACGTTCCCGGTCTGGA 61.368 66.667 0.00 0.00 42.00 3.86
6529 7853 2.260743 GACGTTCCCGGTCTGGAC 59.739 66.667 0.00 0.00 42.00 4.02
6554 7884 2.368875 GACCTTGGACCTTGAGTCTTCA 59.631 50.000 0.00 0.00 45.54 3.02
6578 7908 2.167281 CTGGACCGAGTCATGAGTTCAT 59.833 50.000 4.13 0.00 36.96 2.57
6600 7930 6.257849 TCATTCACTCGGCAGTTGATAATTAC 59.742 38.462 0.00 0.00 0.00 1.89
6608 7938 5.463724 CGGCAGTTGATAATTACCTTCTCTC 59.536 44.000 0.00 0.00 0.00 3.20
6640 7978 3.006940 TCCAGACACATTATGTTTCCGC 58.993 45.455 7.76 0.00 43.56 5.54
6687 8025 0.464452 GTATCCCGGACTTGACCTGG 59.536 60.000 0.73 0.00 35.97 4.45
6716 8055 1.271597 GGCTGGTGACTTGAAGTCCAT 60.272 52.381 21.45 0.00 44.44 3.41
6877 8238 3.493350 GGCGCTCTCCTGAATCTTTGATA 60.493 47.826 7.64 0.00 0.00 2.15
6896 8257 4.340097 TGATACGGTTTCGACTGACCATAT 59.660 41.667 11.17 6.41 40.11 1.78
6964 8484 2.029828 AGAAGACGTGATTGCGAGTTCT 60.030 45.455 0.00 0.00 34.89 3.01
6967 8487 1.651138 GACGTGATTGCGAGTTCTGAG 59.349 52.381 0.00 0.00 35.59 3.35
6977 8497 1.403514 CGAGTTCTGAGAAGGCTGGTC 60.404 57.143 0.00 0.00 0.00 4.02
7015 8713 5.673068 GCTGCACATGTGAAATAGAACAGAG 60.673 44.000 29.80 4.02 0.00 3.35
7039 8737 9.168451 GAGCATATGTAGAGCAGATACTAGTAA 57.832 37.037 6.70 0.00 0.00 2.24
7051 8749 9.857957 AGCAGATACTAGTAAAAGAAACTGTAC 57.142 33.333 6.70 0.00 0.00 2.90
7140 8860 2.977456 TCGTCGACGTCGGGGAAA 60.977 61.111 35.05 15.12 40.80 3.13
7209 8929 1.211969 GAGGTCAGTAGTCGCGCAA 59.788 57.895 8.75 0.00 0.00 4.85
7234 8954 3.004315 CGCACACCAAAAACCTTATCACT 59.996 43.478 0.00 0.00 0.00 3.41
7241 8961 6.712547 CACCAAAAACCTTATCACTCTTCTCT 59.287 38.462 0.00 0.00 0.00 3.10
7248 8968 6.123651 ACCTTATCACTCTTCTCTCGTACAT 58.876 40.000 0.00 0.00 0.00 2.29
7260 8980 4.098055 TCTCGTACATGACTCAAAGAGC 57.902 45.455 0.00 0.00 32.04 4.09
7269 8989 4.156455 TGACTCAAAGAGCTGGAGTTTT 57.844 40.909 0.00 0.00 41.68 2.43
7289 9009 2.363925 AGGCCTACTGTCCCGACC 60.364 66.667 1.29 0.00 0.00 4.79
7290 9010 3.468140 GGCCTACTGTCCCGACCC 61.468 72.222 0.00 0.00 0.00 4.46
7355 9075 0.032952 TCAGTGCTCTAAAACGCGGT 59.967 50.000 12.47 0.00 0.00 5.68
7373 9093 1.227823 TGGCGTGAGGAAGGTGTTG 60.228 57.895 0.00 0.00 0.00 3.33
7387 9107 1.940613 GGTGTTGTTCTGGTGTGTCTC 59.059 52.381 0.00 0.00 0.00 3.36
7392 9112 2.666317 TGTTCTGGTGTGTCTCTCTGA 58.334 47.619 0.00 0.00 0.00 3.27
7422 9143 4.808364 GCAGACTCTCTTTTATAGGCACAG 59.192 45.833 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 276 3.746045 ATATGTAAACATCGGTCGGCT 57.254 42.857 0.00 0.00 37.76 5.52
89 340 3.175152 GAGCGTGAACACTACATCAGAG 58.825 50.000 3.51 0.00 0.00 3.35
109 360 2.651105 TAACGAGTGGGCATGCGGA 61.651 57.895 12.44 0.00 0.00 5.54
184 441 0.593128 AACAGAGTGTTTGATGCGGC 59.407 50.000 0.00 0.00 37.26 6.53
190 447 3.755905 TGTTTCTGCAACAGAGTGTTTGA 59.244 39.130 0.00 0.00 41.75 2.69
224 534 0.242825 CTGCGGGAAGTAACGAGTGA 59.757 55.000 0.00 0.00 0.00 3.41
246 556 0.937304 TGTTTCTGCAACAGAGCGTC 59.063 50.000 0.00 0.00 41.75 5.19
294 605 0.657312 CTGCAACAGAGCGTTTGTCA 59.343 50.000 0.00 0.00 34.86 3.58
295 606 0.937304 TCTGCAACAGAGCGTTTGTC 59.063 50.000 0.00 0.00 35.39 3.18
329 640 0.675083 TGCGGGAAGTAACGAGTGAA 59.325 50.000 0.00 0.00 0.00 3.18
330 641 0.675083 TTGCGGGAAGTAACGAGTGA 59.325 50.000 0.00 0.00 0.00 3.41
380 691 3.626670 CCCTGCTATTTCTCTTGCTTCTG 59.373 47.826 0.00 0.00 0.00 3.02
385 696 1.946081 GCTCCCTGCTATTTCTCTTGC 59.054 52.381 0.00 0.00 38.95 4.01
418 729 1.037030 TCCCATTTTCTGGCCGATGC 61.037 55.000 0.00 0.00 44.46 3.91
442 754 5.299531 TCAAGTAGGTATGGTTCAGAGATCG 59.700 44.000 0.00 0.00 0.00 3.69
461 773 2.125512 GCCGGCGATGACTCAAGT 60.126 61.111 12.58 0.00 0.00 3.16
488 801 1.171308 CATCAACAACTGGCTCAGGG 58.829 55.000 7.06 2.12 35.51 4.45
500 813 1.502990 CCAACGCGGTGACATCAACA 61.503 55.000 28.95 0.00 31.75 3.33
503 816 0.533032 TATCCAACGCGGTGACATCA 59.467 50.000 28.95 3.75 35.57 3.07
508 821 0.674269 GGGTTTATCCAACGCGGTGA 60.674 55.000 28.95 12.59 38.45 4.02
562 893 1.676678 GGAGTGTGAGCGGCTGGATA 61.677 60.000 7.50 0.00 0.00 2.59
602 933 1.617947 GGAGAGTTCCATCCCGCAGT 61.618 60.000 0.00 0.00 43.45 4.40
649 980 2.065799 ACCCACCTCTTGTTTCAGGAT 58.934 47.619 0.00 0.00 33.52 3.24
667 998 3.119849 ACGCATGTCTATTTTCTGCAACC 60.120 43.478 0.00 0.00 33.13 3.77
675 1006 1.924524 CGGTCGACGCATGTCTATTTT 59.075 47.619 9.92 0.00 43.21 1.82
696 1027 5.182190 GCTGTCCGATCTATGTCTTATCAGA 59.818 44.000 0.00 0.00 0.00 3.27
697 1028 5.398169 GCTGTCCGATCTATGTCTTATCAG 58.602 45.833 0.00 0.00 0.00 2.90
698 1029 4.218635 GGCTGTCCGATCTATGTCTTATCA 59.781 45.833 0.00 0.00 0.00 2.15
699 1030 4.218635 TGGCTGTCCGATCTATGTCTTATC 59.781 45.833 0.00 0.00 34.14 1.75
701 1032 3.318275 GTGGCTGTCCGATCTATGTCTTA 59.682 47.826 0.00 0.00 34.14 2.10
702 1033 2.101582 GTGGCTGTCCGATCTATGTCTT 59.898 50.000 0.00 0.00 34.14 3.01
706 1055 0.668535 TCGTGGCTGTCCGATCTATG 59.331 55.000 0.00 0.00 34.14 2.23
708 1057 1.101635 CCTCGTGGCTGTCCGATCTA 61.102 60.000 0.00 0.00 34.14 1.98
747 1101 2.207590 CTTACCTTTTACCGGCCGATC 58.792 52.381 30.73 0.00 0.00 3.69
785 1139 7.662258 TCGTGTGGATAGTAAAATTGAAAAGGA 59.338 33.333 0.00 0.00 0.00 3.36
786 1140 7.812648 TCGTGTGGATAGTAAAATTGAAAAGG 58.187 34.615 0.00 0.00 0.00 3.11
787 1141 7.481798 GCTCGTGTGGATAGTAAAATTGAAAAG 59.518 37.037 0.00 0.00 0.00 2.27
788 1142 7.174253 AGCTCGTGTGGATAGTAAAATTGAAAA 59.826 33.333 0.00 0.00 0.00 2.29
802 1156 0.976641 TTTCCTGAGCTCGTGTGGAT 59.023 50.000 9.64 0.00 0.00 3.41
824 1178 2.752903 GTGTTGGTGACTTTGGAAGTGT 59.247 45.455 0.00 0.00 43.03 3.55
830 1184 5.766150 TTATCAAGTGTTGGTGACTTTGG 57.234 39.130 0.00 0.00 31.05 3.28
848 1202 7.536281 CGTAGGCTTGTTTTGGTTACTTTTATC 59.464 37.037 0.00 0.00 0.00 1.75
877 1232 7.141363 AGCTACTTGACTTTTGTTAATGCTTG 58.859 34.615 0.00 0.00 31.00 4.01
901 1263 2.972625 TCGACTAATCCAGCAACCAAG 58.027 47.619 0.00 0.00 0.00 3.61
931 1293 3.477968 CGTGTTGTGATTAAAAATGCGCG 60.478 43.478 0.00 0.00 0.00 6.86
941 1303 5.352016 GCTTATGGGTTACGTGTTGTGATTA 59.648 40.000 0.00 0.00 0.00 1.75
982 1344 2.029290 AGTCAGTGTGGGATTACGTGAC 60.029 50.000 0.00 0.00 37.39 3.67
1000 1362 9.212641 ACCTCCTTATAACGTTTTTCTAAAGTC 57.787 33.333 5.91 0.00 0.00 3.01
1095 1457 3.482156 TTGCTGCTTTCTCTCTGTCTT 57.518 42.857 0.00 0.00 0.00 3.01
1435 1797 4.980805 ATGGCAACCGCGTGACGT 62.981 61.111 6.91 0.00 41.42 4.34
1447 1818 2.877300 GCAGAACTGAAGGAAGATGGCA 60.877 50.000 5.97 0.00 0.00 4.92
1503 1876 2.875933 TCGAACCGCAATTTTCAGAACT 59.124 40.909 0.00 0.00 0.00 3.01
1562 1935 1.905843 CCACCCAAATCGGCACCAA 60.906 57.895 0.00 0.00 0.00 3.67
1567 1940 1.379843 ACATCCCACCCAAATCGGC 60.380 57.895 0.00 0.00 0.00 5.54
1584 1957 3.569200 GAACTGGCCCCCACTCCAC 62.569 68.421 0.00 0.00 0.00 4.02
1723 2096 1.900245 TCTCACGCCGGCACTATATA 58.100 50.000 28.98 1.55 0.00 0.86
1724 2097 1.037493 TTCTCACGCCGGCACTATAT 58.963 50.000 28.98 0.23 0.00 0.86
1773 2146 4.563184 GTGGTCGCAACAAACAAACATTTA 59.437 37.500 0.00 0.00 0.00 1.40
1802 2175 5.689819 ACGAAAAATGTGATCTACAACAGC 58.310 37.500 0.00 0.00 43.77 4.40
1823 2196 1.805945 GCAGAGCTTCACCCGTACG 60.806 63.158 8.69 8.69 0.00 3.67
1826 2199 1.882989 GAGAGCAGAGCTTCACCCGT 61.883 60.000 0.00 0.00 39.88 5.28
1831 2204 3.323115 TCAGAAAAGAGAGCAGAGCTTCA 59.677 43.478 0.00 0.00 39.88 3.02
1832 2205 3.924144 TCAGAAAAGAGAGCAGAGCTTC 58.076 45.455 0.00 0.00 39.88 3.86
1872 2245 4.742438 TGTTCATCGGCAAAAGTTAGAC 57.258 40.909 0.00 0.00 0.00 2.59
1919 2293 1.531578 GTGACGGGTCAAAGCTTCTTC 59.468 52.381 0.00 0.00 41.85 2.87
1921 2295 0.250338 GGTGACGGGTCAAAGCTTCT 60.250 55.000 0.00 0.00 41.85 2.85
1941 2315 1.834263 AGTCTAGTGCAGAATGGGACC 59.166 52.381 0.00 0.00 34.17 4.46
2020 2395 5.657302 CGGAGGGAGTATAAAGCTATGGTAT 59.343 44.000 0.00 0.00 0.00 2.73
2028 2403 2.224233 GGGAACGGAGGGAGTATAAAGC 60.224 54.545 0.00 0.00 0.00 3.51
2036 2411 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
2037 2412 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
2038 2413 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
2039 2414 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
2040 2415 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
2041 2416 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
2042 2417 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
2043 2418 8.263940 TCTAGAAAGACAAATATTTGGGAACG 57.736 34.615 27.43 11.14 42.34 3.95
2044 2419 9.449719 TCTCTAGAAAGACAAATATTTGGGAAC 57.550 33.333 27.43 16.80 42.34 3.62
2055 2430 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2056 2431 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2057 2432 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2058 2433 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2059 2434 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2060 2435 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2061 2436 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2062 2437 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2063 2438 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2064 2439 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2065 2440 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2066 2441 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2067 2442 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
2068 2443 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2069 2444 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
2070 2445 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2071 2446 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2072 2447 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2073 2448 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2074 2449 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2075 2450 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2076 2451 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2077 2452 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2078 2453 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2079 2454 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2080 2455 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2081 2456 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2082 2457 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
2083 2458 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2084 2459 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2085 2460 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2086 2461 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2087 2462 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2088 2463 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2089 2464 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2090 2465 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2091 2466 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
2092 2467 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
2093 2468 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
2094 2469 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
2132 2507 3.131577 ACGGACACAACATACGGATGTAT 59.868 43.478 15.10 2.23 45.93 2.29
2133 2508 2.492881 ACGGACACAACATACGGATGTA 59.507 45.455 15.10 0.00 45.93 2.29
2135 2510 2.004583 ACGGACACAACATACGGATG 57.995 50.000 5.94 5.94 39.16 3.51
2136 2511 2.739913 CAAACGGACACAACATACGGAT 59.260 45.455 0.00 0.00 0.00 4.18
2137 2512 2.136728 CAAACGGACACAACATACGGA 58.863 47.619 0.00 0.00 0.00 4.69
2138 2513 2.136728 TCAAACGGACACAACATACGG 58.863 47.619 0.00 0.00 0.00 4.02
2139 2514 3.863396 TTCAAACGGACACAACATACG 57.137 42.857 0.00 0.00 0.00 3.06
2140 2515 4.381566 GCATTTCAAACGGACACAACATAC 59.618 41.667 0.00 0.00 0.00 2.39
2141 2516 4.541779 GCATTTCAAACGGACACAACATA 58.458 39.130 0.00 0.00 0.00 2.29
2142 2517 3.380142 GCATTTCAAACGGACACAACAT 58.620 40.909 0.00 0.00 0.00 2.71
2143 2518 2.480416 GGCATTTCAAACGGACACAACA 60.480 45.455 0.00 0.00 0.00 3.33
2144 2519 2.124122 GGCATTTCAAACGGACACAAC 58.876 47.619 0.00 0.00 0.00 3.32
2145 2520 2.028130 AGGCATTTCAAACGGACACAA 58.972 42.857 0.00 0.00 0.00 3.33
2146 2521 1.686355 AGGCATTTCAAACGGACACA 58.314 45.000 0.00 0.00 0.00 3.72
2147 2522 3.071479 TCTAGGCATTTCAAACGGACAC 58.929 45.455 0.00 0.00 0.00 3.67
2148 2523 3.410631 TCTAGGCATTTCAAACGGACA 57.589 42.857 0.00 0.00 0.00 4.02
2149 2524 4.454504 TCTTTCTAGGCATTTCAAACGGAC 59.545 41.667 0.00 0.00 0.00 4.79
2150 2525 4.454504 GTCTTTCTAGGCATTTCAAACGGA 59.545 41.667 0.00 0.00 0.00 4.69
2151 2526 4.215399 TGTCTTTCTAGGCATTTCAAACGG 59.785 41.667 0.00 0.00 29.10 4.44
2152 2527 5.356882 TGTCTTTCTAGGCATTTCAAACG 57.643 39.130 0.00 0.00 29.10 3.60
2153 2528 9.860898 ATATTTGTCTTTCTAGGCATTTCAAAC 57.139 29.630 0.00 0.00 35.56 2.93
2156 2531 9.859427 CAAATATTTGTCTTTCTAGGCATTTCA 57.141 29.630 18.32 0.00 35.56 2.69
2157 2532 9.305925 CCAAATATTTGTCTTTCTAGGCATTTC 57.694 33.333 23.24 0.00 35.56 2.17
2158 2533 8.260114 CCCAAATATTTGTCTTTCTAGGCATTT 58.740 33.333 23.24 0.00 35.56 2.32
2159 2534 7.619302 TCCCAAATATTTGTCTTTCTAGGCATT 59.381 33.333 23.24 0.00 35.56 3.56
2160 2535 7.125391 TCCCAAATATTTGTCTTTCTAGGCAT 58.875 34.615 23.24 0.00 35.56 4.40
2161 2536 6.489603 TCCCAAATATTTGTCTTTCTAGGCA 58.510 36.000 23.24 5.94 36.45 4.75
2162 2537 7.258441 GTTCCCAAATATTTGTCTTTCTAGGC 58.742 38.462 23.24 3.57 36.45 3.93
2163 2538 7.415206 CCGTTCCCAAATATTTGTCTTTCTAGG 60.415 40.741 23.24 15.51 36.45 3.02
2164 2539 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
2165 2540 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
2166 2541 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
2167 2542 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
2168 2543 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
2169 2544 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
2170 2545 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
2171 2546 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
2172 2547 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
2173 2548 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
2174 2549 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
2175 2550 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
2176 2551 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2177 2552 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2178 2553 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2179 2554 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
2180 2555 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
2181 2556 0.410663 TTCTACTCCCTCCGTTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
2182 2557 1.112950 CTTCTACTCCCTCCGTTCCC 58.887 60.000 0.00 0.00 0.00 3.97
2183 2558 1.112950 CCTTCTACTCCCTCCGTTCC 58.887 60.000 0.00 0.00 0.00 3.62
2184 2559 0.460722 GCCTTCTACTCCCTCCGTTC 59.539 60.000 0.00 0.00 0.00 3.95
2185 2560 0.252103 TGCCTTCTACTCCCTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
2186 2561 0.684805 CTGCCTTCTACTCCCTCCGT 60.685 60.000 0.00 0.00 0.00 4.69
2187 2562 0.395862 TCTGCCTTCTACTCCCTCCG 60.396 60.000 0.00 0.00 0.00 4.63
2188 2563 1.063567 TCTCTGCCTTCTACTCCCTCC 60.064 57.143 0.00 0.00 0.00 4.30
2189 2564 2.445682 TCTCTGCCTTCTACTCCCTC 57.554 55.000 0.00 0.00 0.00 4.30
2190 2565 4.544564 TTATCTCTGCCTTCTACTCCCT 57.455 45.455 0.00 0.00 0.00 4.20
2191 2566 5.816955 AATTATCTCTGCCTTCTACTCCC 57.183 43.478 0.00 0.00 0.00 4.30
2192 2567 7.291411 TGTAATTATCTCTGCCTTCTACTCC 57.709 40.000 0.00 0.00 0.00 3.85
2193 2568 8.634444 TCTTGTAATTATCTCTGCCTTCTACTC 58.366 37.037 0.00 0.00 0.00 2.59
2194 2569 8.417884 GTCTTGTAATTATCTCTGCCTTCTACT 58.582 37.037 0.00 0.00 0.00 2.57
2195 2570 8.198109 TGTCTTGTAATTATCTCTGCCTTCTAC 58.802 37.037 0.00 0.00 0.00 2.59
2196 2571 8.198109 GTGTCTTGTAATTATCTCTGCCTTCTA 58.802 37.037 0.00 0.00 0.00 2.10
2197 2572 7.044798 GTGTCTTGTAATTATCTCTGCCTTCT 58.955 38.462 0.00 0.00 0.00 2.85
2217 2592 4.467795 AGTGGTAGTATCAGCAATGTGTCT 59.532 41.667 0.00 0.00 0.00 3.41
2245 2620 1.639298 GATGACTGCGCAGGTCCAAC 61.639 60.000 38.27 25.80 33.22 3.77
2254 2629 0.928922 CTGATCACTGATGACTGCGC 59.071 55.000 0.00 0.00 37.79 6.09
2382 2757 2.824041 CTACCCATGCACACCGCC 60.824 66.667 0.00 0.00 41.33 6.13
2389 2764 3.339742 TCCTATCCTATCCTACCCATGCA 59.660 47.826 0.00 0.00 0.00 3.96
2398 2773 8.375373 AGATCATATCCTTCCTATCCTATCCT 57.625 38.462 0.00 0.00 0.00 3.24
2402 2777 9.874195 CACATAGATCATATCCTTCCTATCCTA 57.126 37.037 0.00 0.00 0.00 2.94
2465 2880 4.642885 TCCATATTCAACCCAAATCGGAAC 59.357 41.667 0.00 0.00 36.56 3.62
2566 3004 5.421693 CCCAAACCCAATGAATCTAATGTGA 59.578 40.000 0.00 0.00 0.00 3.58
2568 3006 5.588845 TCCCAAACCCAATGAATCTAATGT 58.411 37.500 0.00 0.00 0.00 2.71
2587 3025 7.739444 AGGACTACATAATTAAGATCCATCCCA 59.261 37.037 10.69 0.00 0.00 4.37
2610 3048 6.126863 ACTGTCTTAATTCACATTCCAGGA 57.873 37.500 0.00 0.00 0.00 3.86
2615 3053 9.884465 GCCATATTACTGTCTTAATTCACATTC 57.116 33.333 0.00 0.00 0.00 2.67
2620 3058 5.995282 CCCGCCATATTACTGTCTTAATTCA 59.005 40.000 0.00 0.00 0.00 2.57
2902 3340 5.493133 TGACTAATGTGGTCACAACAAAC 57.507 39.130 7.92 1.97 45.41 2.93
3015 3454 2.781174 TGGGACACCTTACTCCAAAAGT 59.219 45.455 0.00 0.00 38.76 2.66
3163 3602 4.442192 GGAACTATGGCTGAGTAGGTTCAG 60.442 50.000 0.00 0.00 45.85 3.02
3238 3678 8.943594 ACCTACCAGTCATAAATTAAACCAAA 57.056 30.769 0.00 0.00 0.00 3.28
3264 3704 3.463048 ACTTTTCCAGCATCCAAGGAT 57.537 42.857 0.00 0.00 34.81 3.24
3339 3779 5.271598 TGCCATCCAATGATAGGACTTTTT 58.728 37.500 0.00 0.00 38.13 1.94
3342 3782 3.718434 TCTGCCATCCAATGATAGGACTT 59.282 43.478 0.00 0.00 38.13 3.01
3408 3848 3.879295 CCTTCTTCAGTTGCTTGAACTCA 59.121 43.478 0.00 0.00 43.52 3.41
3605 4046 4.433615 TCAAGAGCGTCCTATTGAATGAC 58.566 43.478 0.00 0.00 43.97 3.06
3652 4093 2.023673 CCCATTTTTCGCTCAGGCATA 58.976 47.619 0.00 0.00 38.60 3.14
3676 4117 0.179048 CACAGTCCTGTCCAACAGCA 60.179 55.000 0.00 0.00 44.63 4.41
3918 4371 9.449719 CTAAGTATGTTTTCTTGGAAGGTACAT 57.550 33.333 0.00 0.00 0.00 2.29
4044 4661 9.614792 AGAACAAGACAAAAACTATCTTACACT 57.385 29.630 0.00 0.00 31.47 3.55
4082 4709 5.113383 CCTTTCCCAGTTGTTACCAAAAAC 58.887 41.667 0.00 0.00 30.94 2.43
4110 4748 6.894654 TCACATCCCTAATCCAGCAAAATTAA 59.105 34.615 0.00 0.00 0.00 1.40
4111 4749 6.430864 TCACATCCCTAATCCAGCAAAATTA 58.569 36.000 0.00 0.00 0.00 1.40
4112 4750 5.271598 TCACATCCCTAATCCAGCAAAATT 58.728 37.500 0.00 0.00 0.00 1.82
4362 5638 0.892755 CCTGGTAGCGTGGAGTAACA 59.107 55.000 0.00 0.00 0.00 2.41
4523 5799 1.211969 GCAGCACAAGTGATGGCAG 59.788 57.895 18.67 0.00 46.15 4.85
4581 5857 9.237846 GGTGAAATTAGCAAATATTCTTAGCAC 57.762 33.333 0.00 0.00 0.00 4.40
4582 5858 8.413229 GGGTGAAATTAGCAAATATTCTTAGCA 58.587 33.333 0.00 0.00 0.00 3.49
4675 5951 2.357569 GGCAATTCCTTCAGACCCTGAT 60.358 50.000 0.00 0.00 40.39 2.90
4726 6002 3.609807 GGCGCAAAGTTTTGAGATCAATC 59.390 43.478 10.83 0.00 39.85 2.67
4810 6087 8.090214 AGTGTTGTTTCAAATTGCTAGCAATAT 58.910 29.630 36.46 24.84 44.86 1.28
5133 6412 9.042008 ACAGTACAACTAAAAATGTGTGTCTAG 57.958 33.333 0.00 0.00 0.00 2.43
5181 6460 6.592607 ACTTTGTTAGTGACTCGACTGAAAAA 59.407 34.615 0.00 0.00 35.19 1.94
5434 6713 2.603560 GAGGTAGCGCAACATAGTCAAC 59.396 50.000 11.47 0.00 0.00 3.18
5447 6726 3.213249 AGTGAACGTTTAGAGGTAGCG 57.787 47.619 0.46 0.00 0.00 4.26
5548 6830 1.270907 GGAACCTCCTGAGCTCTCAA 58.729 55.000 16.19 0.00 39.39 3.02
5643 6926 6.422701 GGTTTTAACAAGGGAATTCTTTTCCG 59.577 38.462 5.23 0.00 39.46 4.30
5683 6991 7.227711 ACCTTTTATTTTTCCGTTTTTCATGGG 59.772 33.333 0.00 0.00 31.32 4.00
5742 7051 1.779061 GCACCTCCCAAGTCTTCCCA 61.779 60.000 0.00 0.00 0.00 4.37
5757 7066 0.314935 CCATGATTATTGCCCGCACC 59.685 55.000 0.00 0.00 0.00 5.01
5761 7070 3.149196 AGCTAACCATGATTATTGCCCG 58.851 45.455 0.00 0.00 0.00 6.13
5843 7152 3.188254 TCAACTTGTGCCGTTCATACATG 59.812 43.478 0.00 0.00 0.00 3.21
6027 7337 0.961753 GCACAAGAGGGGGACAAAAG 59.038 55.000 0.00 0.00 0.00 2.27
6043 7353 2.691984 AAAATTAACCACGTCGGCAC 57.308 45.000 0.00 0.00 39.03 5.01
6273 7585 1.652012 CGAGAGATCAGGCGGAGTC 59.348 63.158 0.00 0.00 0.00 3.36
6345 7662 3.655777 TGGAAGGAAGTATGGTGGAAAGT 59.344 43.478 0.00 0.00 0.00 2.66
6386 7703 8.907685 CACTGTTCTTTTTGTTTCGTTTCTAAA 58.092 29.630 0.00 0.00 0.00 1.85
6387 7704 7.539366 CCACTGTTCTTTTTGTTTCGTTTCTAA 59.461 33.333 0.00 0.00 0.00 2.10
6390 7707 5.061684 CCCACTGTTCTTTTTGTTTCGTTTC 59.938 40.000 0.00 0.00 0.00 2.78
6400 7717 4.622933 GCAAAGGTTCCCACTGTTCTTTTT 60.623 41.667 0.00 0.00 0.00 1.94
6418 7739 0.662619 TTGAACGAGGTGCAGCAAAG 59.337 50.000 19.63 10.95 0.00 2.77
6432 7753 6.852853 CGTACCATCATCATGCTTTATTGAAC 59.147 38.462 0.00 0.00 0.00 3.18
6446 7770 5.743872 GCAAAAGGAATTTCGTACCATCATC 59.256 40.000 0.00 0.00 0.00 2.92
6447 7771 5.394115 GGCAAAAGGAATTTCGTACCATCAT 60.394 40.000 0.00 0.00 0.00 2.45
6450 7774 4.086457 AGGCAAAAGGAATTTCGTACCAT 58.914 39.130 0.00 0.00 0.00 3.55
6469 7793 3.836151 ACCACACGGTGAAAAGGC 58.164 55.556 16.29 0.00 46.79 4.35
6495 7819 2.220586 TCGTCCCATTGGCCAGTCA 61.221 57.895 5.11 0.00 0.00 3.41
6499 7823 3.185299 AACGTCGTCCCATTGGCCA 62.185 57.895 0.00 0.00 0.00 5.36
6525 7849 1.846124 GGTCCAAGGTCCAGGTCCA 60.846 63.158 5.43 0.00 33.90 4.02
6526 7850 1.134438 AAGGTCCAAGGTCCAGGTCC 61.134 60.000 5.21 8.12 33.91 4.46
6527 7851 0.036875 CAAGGTCCAAGGTCCAGGTC 59.963 60.000 5.21 0.00 0.00 3.85
6528 7852 0.401395 TCAAGGTCCAAGGTCCAGGT 60.401 55.000 5.21 0.00 0.00 4.00
6529 7853 0.326264 CTCAAGGTCCAAGGTCCAGG 59.674 60.000 5.21 0.00 0.00 4.45
6530 7854 1.002544 GACTCAAGGTCCAAGGTCCAG 59.997 57.143 5.21 0.00 38.93 3.86
6554 7884 1.305297 TCATGACTCGGTCCAGCCT 60.305 57.895 0.00 0.00 34.25 4.58
6578 7908 4.873827 GGTAATTATCAACTGCCGAGTGAA 59.126 41.667 0.00 0.00 30.61 3.18
6600 7930 4.085733 TGGAAGAGACTGAAGAGAGAAGG 58.914 47.826 0.00 0.00 0.00 3.46
6687 8025 2.359850 TCACCAGCCAATCGCCAC 60.360 61.111 0.00 0.00 38.78 5.01
6716 8055 4.361971 ACTCCAGAGACCCCGCGA 62.362 66.667 8.23 0.00 0.00 5.87
6877 8238 2.232941 ACATATGGTCAGTCGAAACCGT 59.767 45.455 7.80 11.18 38.45 4.83
6902 8263 3.861131 GCTCTTGACAGAATACGTGTGGT 60.861 47.826 0.00 0.00 0.00 4.16
6903 8264 2.668457 GCTCTTGACAGAATACGTGTGG 59.332 50.000 0.00 0.00 0.00 4.17
6964 8484 1.754745 GTGTGGACCAGCCTTCTCA 59.245 57.895 0.00 0.00 37.63 3.27
7051 8749 9.653287 TTCATGTACCTTTTGTTGAGTATCTAG 57.347 33.333 0.00 0.00 34.92 2.43
7055 8753 7.307751 CGTGTTCATGTACCTTTTGTTGAGTAT 60.308 37.037 0.00 0.00 0.00 2.12
7140 8860 2.951229 ACTTCCCCAACGATGACTTT 57.049 45.000 0.00 0.00 0.00 2.66
7209 8929 0.534873 AAGGTTTTTGGTGTGCGCTT 59.465 45.000 9.73 0.00 0.00 4.68
7215 8935 6.365520 AGAAGAGTGATAAGGTTTTTGGTGT 58.634 36.000 0.00 0.00 0.00 4.16
7217 8937 6.842676 AGAGAAGAGTGATAAGGTTTTTGGT 58.157 36.000 0.00 0.00 0.00 3.67
7234 8954 5.705905 TCTTTGAGTCATGTACGAGAGAAGA 59.294 40.000 0.00 0.00 0.00 2.87
7241 8961 3.367395 CCAGCTCTTTGAGTCATGTACGA 60.367 47.826 0.00 0.00 31.39 3.43
7248 8968 3.845781 AAACTCCAGCTCTTTGAGTCA 57.154 42.857 5.48 0.00 38.36 3.41
7260 8980 1.630878 AGTAGGCCTCCAAAACTCCAG 59.369 52.381 9.68 0.00 0.00 3.86
7269 8989 2.363795 CGGGACAGTAGGCCTCCA 60.364 66.667 9.68 0.00 0.00 3.86
7307 9027 1.078426 CGATATTCCCCATCCCGGC 60.078 63.158 0.00 0.00 0.00 6.13
7355 9075 1.227823 CAACACCTTCCTCACGCCA 60.228 57.895 0.00 0.00 0.00 5.69
7367 9087 1.940613 GAGACACACCAGAACAACACC 59.059 52.381 0.00 0.00 0.00 4.16
7373 9093 3.319405 TCTTCAGAGAGACACACCAGAAC 59.681 47.826 0.00 0.00 0.00 3.01
7387 9107 2.684881 GAGAGTCTGCTCCTCTTCAGAG 59.315 54.545 0.00 0.00 42.59 3.35
7392 9112 6.323739 CCTATAAAAGAGAGTCTGCTCCTCTT 59.676 42.308 0.00 0.00 42.59 2.85
7422 9143 0.321996 ACCTGTTCGCTTCCTTCTCC 59.678 55.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.