Multiple sequence alignment - TraesCS6B01G327800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G327800 chr6B 100.000 4240 0 0 1 4240 577368692 577364453 0.000000e+00 7830.0
1 TraesCS6B01G327800 chr6B 92.414 580 33 5 1 570 617035342 617034764 0.000000e+00 817.0
2 TraesCS6B01G327800 chr6B 94.545 55 2 1 4017 4070 539175690 539175744 2.720000e-12 84.2
3 TraesCS6B01G327800 chr6D 94.781 2012 86 11 852 2845 386444115 386442105 0.000000e+00 3116.0
4 TraesCS6B01G327800 chr6D 94.961 635 31 1 2880 3514 386442107 386441474 0.000000e+00 994.0
5 TraesCS6B01G327800 chr6D 82.941 510 27 14 3526 4022 386441432 386440970 5.100000e-109 405.0
6 TraesCS6B01G327800 chr6D 92.045 176 10 3 708 880 386444302 386444128 1.180000e-60 244.0
7 TraesCS6B01G327800 chr6D 88.202 178 9 4 4075 4240 386440972 386440795 7.190000e-48 202.0
8 TraesCS6B01G327800 chr6D 96.825 63 2 0 3372 3434 386441647 386441585 5.800000e-19 106.0
9 TraesCS6B01G327800 chr6D 96.154 52 1 1 4013 4063 457543839 457543788 2.720000e-12 84.2
10 TraesCS6B01G327800 chr6D 96.000 50 1 1 4015 4063 34949520 34949569 3.510000e-11 80.5
11 TraesCS6B01G327800 chr6D 95.833 48 1 1 4017 4063 291383350 291383397 4.550000e-10 76.8
12 TraesCS6B01G327800 chr6A 88.301 1171 64 29 2868 4022 531523909 531522796 0.000000e+00 1336.0
13 TraesCS6B01G327800 chr6A 94.014 852 30 3 1063 1905 531525785 531524946 0.000000e+00 1271.0
14 TraesCS6B01G327800 chr6A 90.107 839 66 8 2021 2845 531524729 531523894 0.000000e+00 1074.0
15 TraesCS6B01G327800 chr6A 89.455 569 59 1 1 569 23692574 23692007 0.000000e+00 717.0
16 TraesCS6B01G327800 chr6A 90.964 166 4 1 4086 4240 531522791 531522626 3.320000e-51 213.0
17 TraesCS6B01G327800 chr6A 91.195 159 7 7 858 1012 531526215 531526060 4.300000e-50 209.0
18 TraesCS6B01G327800 chr6A 92.537 67 5 0 3341 3407 531523410 531523344 3.490000e-16 97.1
19 TraesCS6B01G327800 chr6A 92.727 55 1 3 4011 4063 617690031 617690084 4.550000e-10 76.8
20 TraesCS6B01G327800 chr3D 92.096 582 35 5 1 571 569475346 569474765 0.000000e+00 809.0
21 TraesCS6B01G327800 chr5D 91.972 573 45 1 1 572 486902112 486901540 0.000000e+00 802.0
22 TraesCS6B01G327800 chr5D 91.130 575 42 5 1 569 250586147 250585576 0.000000e+00 771.0
23 TraesCS6B01G327800 chr5D 90.909 572 51 1 6 576 459089280 459089851 0.000000e+00 767.0
24 TraesCS6B01G327800 chr5D 94.444 54 0 3 4013 4063 482605491 482605544 3.510000e-11 80.5
25 TraesCS6B01G327800 chr5D 94.231 52 2 1 4013 4063 294634589 294634640 1.260000e-10 78.7
26 TraesCS6B01G327800 chr2D 91.754 570 46 1 1 569 189289444 189288875 0.000000e+00 791.0
27 TraesCS6B01G327800 chr2D 97.778 45 0 1 4020 4063 124806561 124806605 4.550000e-10 76.8
28 TraesCS6B01G327800 chr7D 89.673 581 52 4 1 576 632856371 632856948 0.000000e+00 734.0
29 TraesCS6B01G327800 chr7D 94.340 53 2 1 4012 4063 431874228 431874176 3.510000e-11 80.5
30 TraesCS6B01G327800 chr7D 91.667 60 2 2 4020 4076 497271191 497271250 3.510000e-11 80.5
31 TraesCS6B01G327800 chr3B 90.418 574 31 7 1 569 736254416 736253862 0.000000e+00 734.0
32 TraesCS6B01G327800 chr4A 89.492 571 60 0 1 571 292930901 292930331 0.000000e+00 723.0
33 TraesCS6B01G327800 chr4D 88.621 290 32 1 284 572 462545047 462544758 6.750000e-93 351.0
34 TraesCS6B01G327800 chr4D 93.103 58 1 3 4020 4076 5527914 5527969 9.770000e-12 82.4
35 TraesCS6B01G327800 chr4D 95.918 49 1 1 4016 4063 124010638 124010686 1.260000e-10 78.7
36 TraesCS6B01G327800 chr4D 93.878 49 2 1 4015 4062 497135738 497135690 5.880000e-09 73.1
37 TraesCS6B01G327800 chr5A 96.078 51 0 2 4015 4063 258060688 258060738 9.770000e-12 82.4
38 TraesCS6B01G327800 chr5A 90.323 62 5 1 4020 4080 5701604 5701543 3.510000e-11 80.5
39 TraesCS6B01G327800 chr3A 92.982 57 3 1 4021 4076 584756395 584756339 9.770000e-12 82.4
40 TraesCS6B01G327800 chr2A 90.625 64 2 2 4017 4076 27422738 27422801 9.770000e-12 82.4
41 TraesCS6B01G327800 chr1D 96.078 51 0 2 4017 4065 410503448 410503398 9.770000e-12 82.4
42 TraesCS6B01G327800 chr1D 95.833 48 1 1 4017 4063 79057193 79057146 4.550000e-10 76.8
43 TraesCS6B01G327800 chr1D 92.453 53 3 1 4012 4063 37527059 37527007 1.640000e-09 75.0
44 TraesCS6B01G327800 chr1B 96.078 51 0 2 4017 4065 553148106 553148056 9.770000e-12 82.4
45 TraesCS6B01G327800 chr4B 91.525 59 3 2 4020 4076 479678688 479678630 3.510000e-11 80.5
46 TraesCS6B01G327800 chrUn 97.826 46 0 1 4019 4063 2713896 2713941 1.260000e-10 78.7
47 TraesCS6B01G327800 chrUn 97.826 46 0 1 4019 4063 2717498 2717543 1.260000e-10 78.7
48 TraesCS6B01G327800 chrUn 97.826 46 0 1 4019 4063 2780376 2780421 1.260000e-10 78.7
49 TraesCS6B01G327800 chrUn 95.918 49 1 1 4015 4062 477580654 477580606 1.260000e-10 78.7
50 TraesCS6B01G327800 chrUn 97.727 44 1 0 4020 4063 20829081 20829124 4.550000e-10 76.8
51 TraesCS6B01G327800 chrUn 97.778 45 0 1 4020 4063 23574969 23574925 4.550000e-10 76.8
52 TraesCS6B01G327800 chrUn 97.778 45 0 1 4020 4063 71312857 71312901 4.550000e-10 76.8
53 TraesCS6B01G327800 chrUn 97.778 45 0 1 4020 4063 79951805 79951849 4.550000e-10 76.8
54 TraesCS6B01G327800 chrUn 95.556 45 1 1 4020 4063 21636770 21636726 2.120000e-08 71.3
55 TraesCS6B01G327800 chrUn 95.556 45 1 1 4020 4063 81701331 81701287 2.120000e-08 71.3
56 TraesCS6B01G327800 chrUn 92.157 51 1 3 4011 4059 310386110 310386159 7.610000e-08 69.4
57 TraesCS6B01G327800 chr1A 95.918 49 0 2 4017 4063 506548688 506548640 1.260000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G327800 chr6B 577364453 577368692 4239 True 7830.000000 7830 100.000000 1 4240 1 chr6B.!!$R1 4239
1 TraesCS6B01G327800 chr6B 617034764 617035342 578 True 817.000000 817 92.414000 1 570 1 chr6B.!!$R2 569
2 TraesCS6B01G327800 chr6D 386440795 386444302 3507 True 844.500000 3116 91.625833 708 4240 6 chr6D.!!$R2 3532
3 TraesCS6B01G327800 chr6A 23692007 23692574 567 True 717.000000 717 89.455000 1 569 1 chr6A.!!$R1 568
4 TraesCS6B01G327800 chr6A 531522626 531526215 3589 True 700.016667 1336 91.186333 858 4240 6 chr6A.!!$R2 3382
5 TraesCS6B01G327800 chr3D 569474765 569475346 581 True 809.000000 809 92.096000 1 571 1 chr3D.!!$R1 570
6 TraesCS6B01G327800 chr5D 486901540 486902112 572 True 802.000000 802 91.972000 1 572 1 chr5D.!!$R2 571
7 TraesCS6B01G327800 chr5D 250585576 250586147 571 True 771.000000 771 91.130000 1 569 1 chr5D.!!$R1 568
8 TraesCS6B01G327800 chr5D 459089280 459089851 571 False 767.000000 767 90.909000 6 576 1 chr5D.!!$F2 570
9 TraesCS6B01G327800 chr2D 189288875 189289444 569 True 791.000000 791 91.754000 1 569 1 chr2D.!!$R1 568
10 TraesCS6B01G327800 chr7D 632856371 632856948 577 False 734.000000 734 89.673000 1 576 1 chr7D.!!$F2 575
11 TraesCS6B01G327800 chr3B 736253862 736254416 554 True 734.000000 734 90.418000 1 569 1 chr3B.!!$R1 568
12 TraesCS6B01G327800 chr4A 292930331 292930901 570 True 723.000000 723 89.492000 1 571 1 chr4A.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 1062 0.319900 CAGGAACGGTGGTGTGAGAG 60.320 60.0 0.00 0.0 0.0 3.20 F
2431 2986 0.178967 TTGTGGCCTGCTTCATTGGA 60.179 50.0 3.32 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2663 3218 0.615544 TCATAACCCCCTCGTCCGTT 60.616 55.0 0.0 0.0 0.0 4.44 R
3988 4603 0.921896 CAATGGGGAGTGAGGGATGT 59.078 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.010733 ACTCTTAAAGATGAGAGAGGATTGAG 57.989 38.462 7.32 0.00 40.76 3.02
97 98 3.840666 AGAGACCCAAACTGCATTAGAGA 59.159 43.478 0.00 0.00 0.00 3.10
105 106 7.015584 ACCCAAACTGCATTAGAGATTTTCTTT 59.984 33.333 0.00 0.00 37.36 2.52
152 153 3.065371 CAGACACCCACTTTCAACTTCAC 59.935 47.826 0.00 0.00 0.00 3.18
167 168 6.223120 TCAACTTCACGAAGATCTCATTGAA 58.777 36.000 13.60 4.33 40.79 2.69
380 403 2.815503 TGATATTTGCGGGCTGATGATG 59.184 45.455 0.00 0.00 0.00 3.07
382 405 2.346766 ATTTGCGGGCTGATGATGTA 57.653 45.000 0.00 0.00 0.00 2.29
504 546 1.529478 TGCCAGCCCGCAAAAACTA 60.529 52.632 0.00 0.00 35.32 2.24
572 614 4.585162 GGGTCTGCTAGAGTTGCTCTAATA 59.415 45.833 7.22 0.03 41.74 0.98
576 618 6.262273 GTCTGCTAGAGTTGCTCTAATAGTCT 59.738 42.308 7.22 0.00 41.74 3.24
577 619 7.442969 GTCTGCTAGAGTTGCTCTAATAGTCTA 59.557 40.741 7.22 0.00 41.74 2.59
578 620 7.659799 TCTGCTAGAGTTGCTCTAATAGTCTAG 59.340 40.741 7.22 0.00 41.74 2.43
579 621 6.608610 GCTAGAGTTGCTCTAATAGTCTAGC 58.391 44.000 17.44 17.44 46.30 3.42
580 622 7.979444 CTAGAGTTGCTCTAATAGTCTAGCT 57.021 40.000 7.22 0.00 41.74 3.32
581 623 6.877611 AGAGTTGCTCTAATAGTCTAGCTC 57.122 41.667 0.00 0.00 39.28 4.09
582 624 6.361433 AGAGTTGCTCTAATAGTCTAGCTCA 58.639 40.000 0.00 0.00 39.28 4.26
583 625 6.486657 AGAGTTGCTCTAATAGTCTAGCTCAG 59.513 42.308 0.00 0.00 39.28 3.35
584 626 6.361433 AGTTGCTCTAATAGTCTAGCTCAGA 58.639 40.000 0.00 0.00 35.95 3.27
585 627 6.831353 AGTTGCTCTAATAGTCTAGCTCAGAA 59.169 38.462 0.00 0.00 34.17 3.02
586 628 7.505585 AGTTGCTCTAATAGTCTAGCTCAGAAT 59.494 37.037 0.00 0.00 34.17 2.40
587 629 7.831691 TGCTCTAATAGTCTAGCTCAGAATT 57.168 36.000 0.00 0.00 34.17 2.17
588 630 7.881142 TGCTCTAATAGTCTAGCTCAGAATTC 58.119 38.462 0.00 0.00 34.17 2.17
589 631 7.723616 TGCTCTAATAGTCTAGCTCAGAATTCT 59.276 37.037 0.88 0.88 34.17 2.40
590 632 8.576442 GCTCTAATAGTCTAGCTCAGAATTCTT 58.424 37.037 4.86 0.00 34.17 2.52
595 637 6.493449 AGTCTAGCTCAGAATTCTTTTTGC 57.507 37.500 4.86 7.80 34.17 3.68
596 638 6.000219 AGTCTAGCTCAGAATTCTTTTTGCA 59.000 36.000 4.86 0.00 34.17 4.08
597 639 6.488006 AGTCTAGCTCAGAATTCTTTTTGCAA 59.512 34.615 4.86 0.00 34.17 4.08
598 640 7.176340 AGTCTAGCTCAGAATTCTTTTTGCAAT 59.824 33.333 4.86 0.00 34.17 3.56
599 641 8.454106 GTCTAGCTCAGAATTCTTTTTGCAATA 58.546 33.333 4.86 0.00 34.17 1.90
600 642 8.671921 TCTAGCTCAGAATTCTTTTTGCAATAG 58.328 33.333 4.86 0.95 0.00 1.73
601 643 7.458409 AGCTCAGAATTCTTTTTGCAATAGA 57.542 32.000 4.86 3.68 0.00 1.98
602 644 7.889469 AGCTCAGAATTCTTTTTGCAATAGAA 58.111 30.769 20.34 20.34 32.91 2.10
603 645 8.529476 AGCTCAGAATTCTTTTTGCAATAGAAT 58.471 29.630 22.18 22.18 39.60 2.40
604 646 8.805688 GCTCAGAATTCTTTTTGCAATAGAATC 58.194 33.333 25.42 20.31 37.58 2.52
607 649 9.850628 CAGAATTCTTTTTGCAATAGAATCTCA 57.149 29.630 25.42 9.15 37.58 3.27
612 654 9.985730 TTCTTTTTGCAATAGAATCTCAATGTT 57.014 25.926 16.34 0.00 0.00 2.71
613 655 9.630098 TCTTTTTGCAATAGAATCTCAATGTTC 57.370 29.630 0.00 0.00 0.00 3.18
614 656 9.635520 CTTTTTGCAATAGAATCTCAATGTTCT 57.364 29.630 0.00 0.00 38.22 3.01
615 657 8.975410 TTTTGCAATAGAATCTCAATGTTCTG 57.025 30.769 0.00 0.00 36.23 3.02
616 658 6.688637 TGCAATAGAATCTCAATGTTCTGG 57.311 37.500 0.00 0.00 36.23 3.86
617 659 5.591472 TGCAATAGAATCTCAATGTTCTGGG 59.409 40.000 0.00 0.00 36.23 4.45
618 660 5.824624 GCAATAGAATCTCAATGTTCTGGGA 59.175 40.000 0.00 0.00 36.23 4.37
619 661 6.489361 GCAATAGAATCTCAATGTTCTGGGAT 59.511 38.462 0.00 0.00 38.20 3.85
620 662 7.014038 GCAATAGAATCTCAATGTTCTGGGATT 59.986 37.037 0.00 0.00 46.92 3.01
621 663 8.910944 CAATAGAATCTCAATGTTCTGGGATTT 58.089 33.333 0.51 0.00 44.79 2.17
622 664 8.688747 ATAGAATCTCAATGTTCTGGGATTTC 57.311 34.615 0.51 0.00 44.79 2.17
623 665 6.729428 AGAATCTCAATGTTCTGGGATTTCT 58.271 36.000 0.51 0.00 44.79 2.52
624 666 6.827762 AGAATCTCAATGTTCTGGGATTTCTC 59.172 38.462 0.51 0.00 44.79 2.87
625 667 5.768980 TCTCAATGTTCTGGGATTTCTCT 57.231 39.130 0.00 0.00 0.00 3.10
626 668 6.131972 TCTCAATGTTCTGGGATTTCTCTT 57.868 37.500 0.00 0.00 0.00 2.85
627 669 6.176183 TCTCAATGTTCTGGGATTTCTCTTC 58.824 40.000 0.00 0.00 0.00 2.87
628 670 5.256474 TCAATGTTCTGGGATTTCTCTTCC 58.744 41.667 0.00 0.00 0.00 3.46
629 671 3.334583 TGTTCTGGGATTTCTCTTCCG 57.665 47.619 0.00 0.00 33.82 4.30
630 672 2.637872 TGTTCTGGGATTTCTCTTCCGT 59.362 45.455 0.00 0.00 33.82 4.69
631 673 3.003480 GTTCTGGGATTTCTCTTCCGTG 58.997 50.000 0.00 0.00 33.82 4.94
632 674 2.536066 TCTGGGATTTCTCTTCCGTGA 58.464 47.619 0.00 0.00 33.82 4.35
633 675 2.233922 TCTGGGATTTCTCTTCCGTGAC 59.766 50.000 0.00 0.00 33.82 3.67
634 676 2.234908 CTGGGATTTCTCTTCCGTGACT 59.765 50.000 0.00 0.00 33.82 3.41
635 677 2.637872 TGGGATTTCTCTTCCGTGACTT 59.362 45.455 0.00 0.00 33.82 3.01
636 678 3.072476 TGGGATTTCTCTTCCGTGACTTT 59.928 43.478 0.00 0.00 33.82 2.66
637 679 4.285003 TGGGATTTCTCTTCCGTGACTTTA 59.715 41.667 0.00 0.00 33.82 1.85
638 680 5.045869 TGGGATTTCTCTTCCGTGACTTTAT 60.046 40.000 0.00 0.00 33.82 1.40
639 681 5.880887 GGGATTTCTCTTCCGTGACTTTATT 59.119 40.000 0.00 0.00 33.82 1.40
640 682 6.037281 GGGATTTCTCTTCCGTGACTTTATTC 59.963 42.308 0.00 0.00 33.82 1.75
641 683 6.819146 GGATTTCTCTTCCGTGACTTTATTCT 59.181 38.462 0.00 0.00 0.00 2.40
642 684 7.010645 GGATTTCTCTTCCGTGACTTTATTCTC 59.989 40.741 0.00 0.00 0.00 2.87
643 685 5.326200 TCTCTTCCGTGACTTTATTCTCC 57.674 43.478 0.00 0.00 0.00 3.71
644 686 5.017490 TCTCTTCCGTGACTTTATTCTCCT 58.983 41.667 0.00 0.00 0.00 3.69
645 687 5.125739 TCTCTTCCGTGACTTTATTCTCCTC 59.874 44.000 0.00 0.00 0.00 3.71
646 688 4.770531 TCTTCCGTGACTTTATTCTCCTCA 59.229 41.667 0.00 0.00 0.00 3.86
647 689 5.245301 TCTTCCGTGACTTTATTCTCCTCAA 59.755 40.000 0.00 0.00 0.00 3.02
648 690 5.477607 TCCGTGACTTTATTCTCCTCAAA 57.522 39.130 0.00 0.00 0.00 2.69
649 691 6.049955 TCCGTGACTTTATTCTCCTCAAAT 57.950 37.500 0.00 0.00 0.00 2.32
650 692 6.472887 TCCGTGACTTTATTCTCCTCAAATT 58.527 36.000 0.00 0.00 0.00 1.82
651 693 6.371548 TCCGTGACTTTATTCTCCTCAAATTG 59.628 38.462 0.00 0.00 0.00 2.32
652 694 6.149474 CCGTGACTTTATTCTCCTCAAATTGT 59.851 38.462 0.00 0.00 0.00 2.71
653 695 7.333423 CCGTGACTTTATTCTCCTCAAATTGTA 59.667 37.037 0.00 0.00 0.00 2.41
654 696 8.717821 CGTGACTTTATTCTCCTCAAATTGTAA 58.282 33.333 0.00 0.00 0.00 2.41
657 699 9.543018 GACTTTATTCTCCTCAAATTGTAAACG 57.457 33.333 0.00 0.00 0.00 3.60
658 700 9.280174 ACTTTATTCTCCTCAAATTGTAAACGA 57.720 29.630 0.00 0.00 0.00 3.85
661 703 5.545658 TCTCCTCAAATTGTAAACGATGC 57.454 39.130 0.00 0.00 0.00 3.91
662 704 4.092821 TCTCCTCAAATTGTAAACGATGCG 59.907 41.667 0.00 0.00 0.00 4.73
663 705 3.126171 TCCTCAAATTGTAAACGATGCGG 59.874 43.478 0.00 0.00 0.00 5.69
664 706 2.845967 CTCAAATTGTAAACGATGCGGC 59.154 45.455 0.00 0.00 0.00 6.53
665 707 1.917303 CAAATTGTAAACGATGCGGCC 59.083 47.619 0.00 0.00 0.00 6.13
666 708 1.169577 AATTGTAAACGATGCGGCCA 58.830 45.000 2.24 0.00 0.00 5.36
667 709 1.388547 ATTGTAAACGATGCGGCCAT 58.611 45.000 2.24 0.00 0.00 4.40
668 710 1.169577 TTGTAAACGATGCGGCCATT 58.830 45.000 2.24 0.00 0.00 3.16
669 711 2.025589 TGTAAACGATGCGGCCATTA 57.974 45.000 2.24 0.00 0.00 1.90
670 712 2.566913 TGTAAACGATGCGGCCATTAT 58.433 42.857 2.24 0.00 0.00 1.28
671 713 2.946329 TGTAAACGATGCGGCCATTATT 59.054 40.909 2.24 0.00 0.00 1.40
672 714 3.378742 TGTAAACGATGCGGCCATTATTT 59.621 39.130 2.24 0.00 0.00 1.40
673 715 3.518634 AAACGATGCGGCCATTATTTT 57.481 38.095 2.24 0.00 0.00 1.82
674 716 4.640789 AAACGATGCGGCCATTATTTTA 57.359 36.364 2.24 0.00 0.00 1.52
675 717 3.896648 ACGATGCGGCCATTATTTTAG 57.103 42.857 2.24 0.00 0.00 1.85
676 718 2.552315 ACGATGCGGCCATTATTTTAGG 59.448 45.455 2.24 0.00 0.00 2.69
677 719 2.811431 CGATGCGGCCATTATTTTAGGA 59.189 45.455 2.24 0.00 0.00 2.94
678 720 3.252215 CGATGCGGCCATTATTTTAGGAA 59.748 43.478 2.24 0.00 0.00 3.36
679 721 4.082787 CGATGCGGCCATTATTTTAGGAAT 60.083 41.667 2.24 0.00 0.00 3.01
680 722 5.123186 CGATGCGGCCATTATTTTAGGAATA 59.877 40.000 2.24 0.00 0.00 1.75
681 723 6.348950 CGATGCGGCCATTATTTTAGGAATAA 60.349 38.462 2.24 0.00 0.00 1.40
682 724 6.716934 TGCGGCCATTATTTTAGGAATAAA 57.283 33.333 2.24 0.00 0.00 1.40
683 725 6.744112 TGCGGCCATTATTTTAGGAATAAAG 58.256 36.000 2.24 0.00 0.00 1.85
684 726 6.322712 TGCGGCCATTATTTTAGGAATAAAGT 59.677 34.615 2.24 0.00 0.00 2.66
685 727 7.147811 TGCGGCCATTATTTTAGGAATAAAGTT 60.148 33.333 2.24 0.00 0.00 2.66
686 728 7.709182 GCGGCCATTATTTTAGGAATAAAGTTT 59.291 33.333 2.24 0.00 0.00 2.66
687 729 9.594478 CGGCCATTATTTTAGGAATAAAGTTTT 57.406 29.630 2.24 0.00 0.00 2.43
742 784 6.057533 ACTTGAGTGAACAGATTTCATCACA 58.942 36.000 7.42 0.00 43.53 3.58
748 790 8.797350 AGTGAACAGATTTCATCACAATGATA 57.203 30.769 7.42 0.00 43.53 2.15
749 791 8.671921 AGTGAACAGATTTCATCACAATGATAC 58.328 33.333 7.42 0.00 43.53 2.24
752 794 8.585471 AACAGATTTCATCACAATGATACCTT 57.415 30.769 0.00 0.00 41.49 3.50
833 877 2.390938 CGCAGATACCGCTTAATTCGA 58.609 47.619 0.00 0.00 0.00 3.71
838 882 5.332656 GCAGATACCGCTTAATTCGAAAGAG 60.333 44.000 0.00 1.57 43.69 2.85
856 900 0.602905 AGGAAAACGCGTGGAAGAGG 60.603 55.000 14.98 0.00 0.00 3.69
958 1045 0.742505 ACAACAGTCGTTCGTCAGGA 59.257 50.000 0.00 0.00 31.13 3.86
973 1062 0.319900 CAGGAACGGTGGTGTGAGAG 60.320 60.000 0.00 0.00 0.00 3.20
1410 1725 4.056125 CTCGTCTGCTCCGGCACA 62.056 66.667 0.00 0.00 44.28 4.57
1547 1862 1.338655 GGCAAGGTAAAGGCAAAACGA 59.661 47.619 0.00 0.00 0.00 3.85
1568 1884 3.923273 AGAACCCCCAAATTTTCCTCT 57.077 42.857 0.00 0.00 0.00 3.69
1614 1930 3.185880 AGCTGAACTAGGGTTAGTGGA 57.814 47.619 0.00 0.00 40.02 4.02
1631 1955 7.715249 GGTTAGTGGATTGTGATATCTGCTTAA 59.285 37.037 3.98 0.00 0.00 1.85
1653 1977 1.160137 AGAAATCACGCTTGTGCCTC 58.840 50.000 0.00 0.00 43.51 4.70
1818 2142 0.756294 TCGAACAAGGTGCTCCAAGA 59.244 50.000 7.70 0.00 35.89 3.02
1821 2145 2.147150 GAACAAGGTGCTCCAAGACTC 58.853 52.381 7.70 0.00 35.89 3.36
1835 2159 3.446161 CCAAGACTCTATTGGTACCGTCA 59.554 47.826 15.12 0.10 41.94 4.35
1902 2227 6.783892 TTTGAATGCTTAATTTCTTGTGGC 57.216 33.333 0.00 0.00 0.00 5.01
1906 2394 3.652274 TGCTTAATTTCTTGTGGCAAGC 58.348 40.909 4.16 0.00 37.89 4.01
1908 2396 3.676646 GCTTAATTTCTTGTGGCAAGCAG 59.323 43.478 4.16 0.00 37.46 4.24
1960 2512 7.948357 ACCACTAGCGACATAGTTTTATCATA 58.052 34.615 0.00 0.00 33.68 2.15
1961 2513 7.866393 ACCACTAGCGACATAGTTTTATCATAC 59.134 37.037 0.00 0.00 33.68 2.39
1962 2514 8.082852 CCACTAGCGACATAGTTTTATCATACT 58.917 37.037 0.00 0.00 33.68 2.12
1963 2515 9.119329 CACTAGCGACATAGTTTTATCATACTC 57.881 37.037 0.00 0.00 33.68 2.59
1964 2516 8.298140 ACTAGCGACATAGTTTTATCATACTCC 58.702 37.037 0.00 0.00 31.89 3.85
1965 2517 6.150318 AGCGACATAGTTTTATCATACTCCG 58.850 40.000 0.00 0.00 0.00 4.63
1966 2518 5.345202 GCGACATAGTTTTATCATACTCCGG 59.655 44.000 0.00 0.00 0.00 5.14
1967 2519 6.675026 CGACATAGTTTTATCATACTCCGGA 58.325 40.000 2.93 2.93 0.00 5.14
1968 2520 7.313646 CGACATAGTTTTATCATACTCCGGAT 58.686 38.462 3.57 0.00 0.00 4.18
1969 2521 8.456471 CGACATAGTTTTATCATACTCCGGATA 58.544 37.037 3.57 0.00 0.00 2.59
1977 2529 9.938280 TTTTATCATACTCCGGATATTACAAGG 57.062 33.333 3.57 0.00 0.00 3.61
1978 2530 8.888836 TTATCATACTCCGGATATTACAAGGA 57.111 34.615 3.57 0.00 0.00 3.36
1979 2531 6.585695 TCATACTCCGGATATTACAAGGAC 57.414 41.667 3.57 0.00 0.00 3.85
1980 2532 6.312529 TCATACTCCGGATATTACAAGGACT 58.687 40.000 3.57 0.00 0.00 3.85
1981 2533 6.433404 TCATACTCCGGATATTACAAGGACTC 59.567 42.308 3.57 0.00 0.00 3.36
1982 2534 4.543689 ACTCCGGATATTACAAGGACTCA 58.456 43.478 3.57 0.00 0.00 3.41
1983 2535 4.960469 ACTCCGGATATTACAAGGACTCAA 59.040 41.667 3.57 0.00 0.00 3.02
1984 2536 5.424252 ACTCCGGATATTACAAGGACTCAAA 59.576 40.000 3.57 0.00 0.00 2.69
1985 2537 6.070424 ACTCCGGATATTACAAGGACTCAAAA 60.070 38.462 3.57 0.00 0.00 2.44
1986 2538 6.346096 TCCGGATATTACAAGGACTCAAAAG 58.654 40.000 0.00 0.00 0.00 2.27
1987 2539 6.070424 TCCGGATATTACAAGGACTCAAAAGT 60.070 38.462 0.00 0.00 38.88 2.66
2004 2556 9.220767 ACTCAAAAGTCAGTTTTATCATACTCC 57.779 33.333 0.00 0.00 36.11 3.85
2005 2557 9.219603 CTCAAAAGTCAGTTTTATCATACTCCA 57.780 33.333 0.00 0.00 36.11 3.86
2006 2558 9.219603 TCAAAAGTCAGTTTTATCATACTCCAG 57.780 33.333 0.00 0.00 36.11 3.86
2007 2559 9.219603 CAAAAGTCAGTTTTATCATACTCCAGA 57.780 33.333 0.00 0.00 36.11 3.86
2008 2560 9.965902 AAAAGTCAGTTTTATCATACTCCAGAT 57.034 29.630 0.00 0.00 36.54 2.90
2038 2590 9.684448 ACAAGAGTATGTGTTATATCTCGAATG 57.316 33.333 0.00 0.00 30.82 2.67
2042 2594 9.464714 GAGTATGTGTTATATCTCGAATGTTGT 57.535 33.333 0.00 0.00 0.00 3.32
2158 2713 6.017109 CACTTGTTGACTAAAGTGGTATGCTT 60.017 38.462 7.50 0.00 46.17 3.91
2431 2986 0.178967 TTGTGGCCTGCTTCATTGGA 60.179 50.000 3.32 0.00 0.00 3.53
2458 3013 2.520020 TGCTGCTGCTTGCCTTGT 60.520 55.556 17.00 0.00 42.00 3.16
2502 3057 2.291282 TGGTTGGCCAGGTAATCGATTT 60.291 45.455 17.19 0.00 40.46 2.17
2520 3075 5.410132 TCGATTTATTCTGCGTTTGAGGAAA 59.590 36.000 0.00 0.00 0.00 3.13
2522 3077 6.747280 CGATTTATTCTGCGTTTGAGGAAATT 59.253 34.615 0.00 0.00 0.00 1.82
2660 3215 4.292186 TCCCAGTGAGAATGGAGAAAAG 57.708 45.455 0.00 0.00 40.51 2.27
2663 3218 3.009473 CCAGTGAGAATGGAGAAAAGGGA 59.991 47.826 0.00 0.00 40.51 4.20
2666 3221 3.437049 GTGAGAATGGAGAAAAGGGAACG 59.563 47.826 0.00 0.00 0.00 3.95
2669 3224 2.491675 ATGGAGAAAAGGGAACGGAC 57.508 50.000 0.00 0.00 0.00 4.79
2729 3284 4.929808 ACATCTACAAGCGAACGAATTCTT 59.070 37.500 3.52 0.00 32.12 2.52
2772 3327 6.856895 AGGATTATGCTTTGTGCTTTCTAAC 58.143 36.000 0.00 0.00 43.37 2.34
2774 3329 7.829211 AGGATTATGCTTTGTGCTTTCTAACTA 59.171 33.333 0.00 0.00 43.37 2.24
2775 3330 8.458843 GGATTATGCTTTGTGCTTTCTAACTAA 58.541 33.333 0.00 0.00 43.37 2.24
2852 3420 8.535335 TCTTCATATATCCTATTGGAAGTGAGC 58.465 37.037 0.00 0.00 46.80 4.26
2853 3421 7.797121 TCATATATCCTATTGGAAGTGAGCA 57.203 36.000 0.00 0.00 46.80 4.26
2854 3422 8.384693 TCATATATCCTATTGGAAGTGAGCAT 57.615 34.615 0.00 0.00 46.80 3.79
2855 3423 9.492730 TCATATATCCTATTGGAAGTGAGCATA 57.507 33.333 0.00 0.00 46.80 3.14
2859 3427 7.805083 ATCCTATTGGAAGTGAGCATATAGT 57.195 36.000 0.00 0.00 46.80 2.12
2860 3428 7.618019 TCCTATTGGAAGTGAGCATATAGTT 57.382 36.000 0.00 0.00 39.87 2.24
2861 3429 8.034313 TCCTATTGGAAGTGAGCATATAGTTT 57.966 34.615 0.00 0.00 39.87 2.66
2862 3430 9.154632 TCCTATTGGAAGTGAGCATATAGTTTA 57.845 33.333 0.00 0.00 39.87 2.01
2863 3431 9.429359 CCTATTGGAAGTGAGCATATAGTTTAG 57.571 37.037 0.00 0.00 34.57 1.85
2864 3432 9.988815 CTATTGGAAGTGAGCATATAGTTTAGT 57.011 33.333 0.00 0.00 0.00 2.24
2865 3433 8.668510 ATTGGAAGTGAGCATATAGTTTAGTG 57.331 34.615 0.00 0.00 0.00 2.74
2866 3434 7.418337 TGGAAGTGAGCATATAGTTTAGTGA 57.582 36.000 0.00 0.00 0.00 3.41
2867 3435 8.023021 TGGAAGTGAGCATATAGTTTAGTGAT 57.977 34.615 0.00 0.00 0.00 3.06
2868 3436 8.144478 TGGAAGTGAGCATATAGTTTAGTGATC 58.856 37.037 0.00 0.00 0.00 2.92
2869 3437 8.144478 GGAAGTGAGCATATAGTTTAGTGATCA 58.856 37.037 0.00 0.00 34.96 2.92
2870 3438 9.703892 GAAGTGAGCATATAGTTTAGTGATCAT 57.296 33.333 0.00 0.00 38.94 2.45
2890 3458 8.448008 TGATCATATAAGCAAAGGGTATTTCCT 58.552 33.333 0.00 0.00 39.17 3.36
2893 3461 9.959721 TCATATAAGCAAAGGGTATTTCCTATC 57.040 33.333 0.00 0.00 35.80 2.08
2894 3462 8.883731 CATATAAGCAAAGGGTATTTCCTATCG 58.116 37.037 0.00 0.00 35.80 2.92
2917 3485 6.320418 TCGGAAGTGAGCATATAGTTTAGTGA 59.680 38.462 0.00 0.00 0.00 3.41
2920 3488 8.364142 GGAAGTGAGCATATAGTTTAGTGATCT 58.636 37.037 0.00 0.00 0.00 2.75
2939 3507 8.322828 AGTGATCTGTTACACTAGAGAGAACTA 58.677 37.037 0.00 0.00 44.06 2.24
3107 3675 6.295719 TGCTGCATATGTCTCTCATCATAT 57.704 37.500 0.00 0.00 37.62 1.78
3155 3723 1.270550 CCTTGCAACCATCACTTCCAC 59.729 52.381 0.00 0.00 0.00 4.02
3161 3729 2.169832 ACCATCACTTCCACTCAACG 57.830 50.000 0.00 0.00 0.00 4.10
3167 3735 1.603802 CACTTCCACTCAACGTGCATT 59.396 47.619 0.00 0.00 42.42 3.56
3182 3750 2.605818 GTGCATTACGAAATGGCTACGA 59.394 45.455 0.00 0.00 42.39 3.43
3265 3833 1.611977 CACCGAGGACTTACACTGACA 59.388 52.381 0.00 0.00 0.00 3.58
3272 3840 6.157211 CGAGGACTTACACTGACATAACTTT 58.843 40.000 0.00 0.00 0.00 2.66
3474 4042 3.753272 GCTTTCTGTTTAGGATGTGAGCA 59.247 43.478 0.00 0.00 0.00 4.26
3519 4087 7.228507 TGAACATTAACATAAAGTGTGCTCTGT 59.771 33.333 0.00 0.00 41.14 3.41
3534 4132 5.011635 TGTGCTCTGTATAAGAAGGTCACAA 59.988 40.000 0.00 0.00 33.37 3.33
3622 4236 7.482169 TGTAAAGAATAGGAGTGATCACAGT 57.518 36.000 27.02 13.31 0.00 3.55
3671 4285 2.289382 TGACGCTGCTTTTATGACAGGA 60.289 45.455 0.00 0.00 31.94 3.86
3677 4291 4.825422 CTGCTTTTATGACAGGAGTCTGA 58.175 43.478 0.00 0.00 45.20 3.27
3694 4308 6.909550 AGTCTGAAGATGACTCTGTTTACT 57.090 37.500 0.00 0.00 40.35 2.24
3696 4310 7.822658 AGTCTGAAGATGACTCTGTTTACTAC 58.177 38.462 0.00 0.00 40.35 2.73
3697 4311 7.448777 AGTCTGAAGATGACTCTGTTTACTACA 59.551 37.037 0.00 0.00 40.35 2.74
3742 4356 3.676093 AGAAACCTTCATCGGACCTTTC 58.324 45.455 0.00 0.00 0.00 2.62
3743 4357 2.094762 AACCTTCATCGGACCTTTCG 57.905 50.000 0.00 0.00 0.00 3.46
3744 4358 0.391263 ACCTTCATCGGACCTTTCGC 60.391 55.000 0.00 0.00 0.00 4.70
3745 4359 0.391130 CCTTCATCGGACCTTTCGCA 60.391 55.000 0.00 0.00 0.00 5.10
3783 4397 2.046604 TGCTCAGCGCATCAGCTT 60.047 55.556 21.32 0.00 46.80 3.74
3784 4398 1.673337 TGCTCAGCGCATCAGCTTT 60.673 52.632 21.32 0.00 46.80 3.51
3785 4399 1.062206 GCTCAGCGCATCAGCTTTC 59.938 57.895 11.47 0.00 46.80 2.62
3789 4403 0.029035 CAGCGCATCAGCTTTCCATC 59.971 55.000 11.47 0.00 46.80 3.51
3828 4443 3.531538 ACTTGTTCAAGACACACGACAT 58.468 40.909 17.75 0.00 38.18 3.06
3891 4506 1.655484 TGCACACAGGATTGCTATCG 58.345 50.000 2.01 0.00 39.62 2.92
3892 4507 0.940126 GCACACAGGATTGCTATCGG 59.060 55.000 2.01 0.14 35.74 4.18
3893 4508 1.743772 GCACACAGGATTGCTATCGGT 60.744 52.381 2.01 0.74 35.74 4.69
3894 4509 2.205074 CACACAGGATTGCTATCGGTC 58.795 52.381 2.01 0.00 0.00 4.79
3895 4510 1.139058 ACACAGGATTGCTATCGGTCC 59.861 52.381 2.01 0.00 0.00 4.46
3896 4511 1.414181 CACAGGATTGCTATCGGTCCT 59.586 52.381 2.01 0.00 41.65 3.85
3897 4512 2.119495 ACAGGATTGCTATCGGTCCTT 58.881 47.619 2.01 0.00 39.01 3.36
3898 4513 2.505819 ACAGGATTGCTATCGGTCCTTT 59.494 45.455 2.01 0.00 39.01 3.11
3899 4514 3.709653 ACAGGATTGCTATCGGTCCTTTA 59.290 43.478 2.01 0.00 39.01 1.85
3900 4515 4.163458 ACAGGATTGCTATCGGTCCTTTAA 59.837 41.667 2.01 0.00 39.01 1.52
3901 4516 5.123227 CAGGATTGCTATCGGTCCTTTAAA 58.877 41.667 2.01 0.00 39.01 1.52
3902 4517 5.588648 CAGGATTGCTATCGGTCCTTTAAAA 59.411 40.000 2.01 0.00 39.01 1.52
3903 4518 6.094881 CAGGATTGCTATCGGTCCTTTAAAAA 59.905 38.462 2.01 0.00 39.01 1.94
3971 4586 7.222872 AGAGTCAAACAATTCTTCATCACTCT 58.777 34.615 0.00 0.00 33.61 3.24
3988 4603 4.039609 TCACTCTGAGAATTGTGAGCTGAA 59.960 41.667 12.44 0.00 34.94 3.02
4022 4637 2.443255 CCCATTGCCCCTGACTATTACT 59.557 50.000 0.00 0.00 0.00 2.24
4023 4638 3.496870 CCCATTGCCCCTGACTATTACTC 60.497 52.174 0.00 0.00 0.00 2.59
4024 4639 3.496870 CCATTGCCCCTGACTATTACTCC 60.497 52.174 0.00 0.00 0.00 3.85
4025 4640 1.802553 TGCCCCTGACTATTACTCCC 58.197 55.000 0.00 0.00 0.00 4.30
4026 4641 1.294068 TGCCCCTGACTATTACTCCCT 59.706 52.381 0.00 0.00 0.00 4.20
4027 4642 1.972075 GCCCCTGACTATTACTCCCTC 59.028 57.143 0.00 0.00 0.00 4.30
4028 4643 2.610873 CCCCTGACTATTACTCCCTCC 58.389 57.143 0.00 0.00 0.00 4.30
4029 4644 2.240279 CCCTGACTATTACTCCCTCCG 58.760 57.143 0.00 0.00 0.00 4.63
4030 4645 2.424523 CCCTGACTATTACTCCCTCCGT 60.425 54.545 0.00 0.00 0.00 4.69
4031 4646 2.885894 CCTGACTATTACTCCCTCCGTC 59.114 54.545 0.00 0.00 0.00 4.79
4032 4647 2.885894 CTGACTATTACTCCCTCCGTCC 59.114 54.545 0.00 0.00 0.00 4.79
4033 4648 2.242965 TGACTATTACTCCCTCCGTCCA 59.757 50.000 0.00 0.00 0.00 4.02
4034 4649 3.294214 GACTATTACTCCCTCCGTCCAA 58.706 50.000 0.00 0.00 0.00 3.53
4035 4650 3.703052 GACTATTACTCCCTCCGTCCAAA 59.297 47.826 0.00 0.00 0.00 3.28
4036 4651 4.098894 ACTATTACTCCCTCCGTCCAAAA 58.901 43.478 0.00 0.00 0.00 2.44
4037 4652 4.720273 ACTATTACTCCCTCCGTCCAAAAT 59.280 41.667 0.00 0.00 0.00 1.82
4038 4653 5.901276 ACTATTACTCCCTCCGTCCAAAATA 59.099 40.000 0.00 0.00 0.00 1.40
4039 4654 5.703730 ATTACTCCCTCCGTCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
4040 4655 3.629142 ACTCCCTCCGTCCAAAATAAG 57.371 47.619 0.00 0.00 0.00 1.73
4041 4656 2.910977 ACTCCCTCCGTCCAAAATAAGT 59.089 45.455 0.00 0.00 0.00 2.24
4042 4657 3.270877 CTCCCTCCGTCCAAAATAAGTG 58.729 50.000 0.00 0.00 0.00 3.16
4043 4658 2.640826 TCCCTCCGTCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
4044 4659 3.007635 CCCTCCGTCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4045 4660 3.307480 CCCTCCGTCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4046 4661 3.933332 CCTCCGTCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4047 4662 4.562757 CCTCCGTCCAAAATAAGTGTCTCA 60.563 45.833 0.00 0.00 0.00 3.27
4048 4663 4.963373 TCCGTCCAAAATAAGTGTCTCAA 58.037 39.130 0.00 0.00 0.00 3.02
4049 4664 4.753107 TCCGTCCAAAATAAGTGTCTCAAC 59.247 41.667 0.00 0.00 0.00 3.18
4050 4665 4.755123 CCGTCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4051 4666 5.238650 CCGTCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
4052 4667 6.238648 CCGTCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
4053 4668 6.632834 CGTCCAAAATAAGTGTCTCAACTTTG 59.367 38.462 0.00 0.00 40.77 2.77
4054 4669 7.480810 GTCCAAAATAAGTGTCTCAACTTTGT 58.519 34.615 0.00 0.00 40.77 2.83
4055 4670 8.617809 GTCCAAAATAAGTGTCTCAACTTTGTA 58.382 33.333 0.00 0.00 40.77 2.41
4056 4671 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
4057 4672 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
4063 4678 8.421673 AAGTGTCTCAACTTTGTACTAACTTC 57.578 34.615 0.00 0.00 37.05 3.01
4064 4679 7.553334 AGTGTCTCAACTTTGTACTAACTTCA 58.447 34.615 0.00 0.00 0.00 3.02
4065 4680 7.491696 AGTGTCTCAACTTTGTACTAACTTCAC 59.508 37.037 0.00 0.00 0.00 3.18
4066 4681 6.474427 TGTCTCAACTTTGTACTAACTTCACG 59.526 38.462 0.00 0.00 0.00 4.35
4067 4682 5.981315 TCTCAACTTTGTACTAACTTCACGG 59.019 40.000 0.00 0.00 0.00 4.94
4068 4683 5.904941 TCAACTTTGTACTAACTTCACGGA 58.095 37.500 0.00 0.00 0.00 4.69
4069 4684 5.981315 TCAACTTTGTACTAACTTCACGGAG 59.019 40.000 0.00 0.00 0.00 4.63
4070 4685 4.879598 ACTTTGTACTAACTTCACGGAGG 58.120 43.478 0.00 0.00 0.00 4.30
4071 4686 3.947910 TTGTACTAACTTCACGGAGGG 57.052 47.619 0.00 0.00 0.00 4.30
4072 4687 3.159213 TGTACTAACTTCACGGAGGGA 57.841 47.619 0.00 0.00 0.00 4.20
4073 4688 3.087031 TGTACTAACTTCACGGAGGGAG 58.913 50.000 0.00 0.00 0.00 4.30
4074 4689 2.305858 ACTAACTTCACGGAGGGAGT 57.694 50.000 0.00 0.00 0.00 3.85
4075 4690 3.446442 ACTAACTTCACGGAGGGAGTA 57.554 47.619 0.00 0.00 0.00 2.59
4076 4691 3.087781 ACTAACTTCACGGAGGGAGTAC 58.912 50.000 0.00 0.00 0.00 2.73
4079 4694 2.322658 ACTTCACGGAGGGAGTACAAA 58.677 47.619 0.00 0.00 0.00 2.83
4122 4748 2.283101 TGCACCCAATGACCCTGC 60.283 61.111 0.00 0.00 0.00 4.85
4143 4769 2.222976 CGTGAGCTGACATGATGAAAGC 60.223 50.000 13.56 13.56 32.37 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.925165 GCTCAATCCTCTCTCATCTTTAAGAG 59.075 42.308 0.03 0.00 40.34 2.85
28 29 7.481798 CCACATTGTCGTAAAAGAATTCTAAGC 59.518 37.037 8.75 0.00 0.00 3.09
105 106 7.828717 TGCATTTTCAATCTCCTTGTATGTCTA 59.171 33.333 0.00 0.00 36.20 2.59
152 153 5.448225 CCAATGGTGTTCAATGAGATCTTCG 60.448 44.000 0.00 0.00 0.00 3.79
167 168 1.152269 AGCCCTTTGCCAATGGTGT 60.152 52.632 8.40 0.00 42.71 4.16
282 286 9.675553 CGTAATACAATAATCATCTGCATTACG 57.324 33.333 10.61 10.61 40.90 3.18
572 614 6.000219 TGCAAAAAGAATTCTGAGCTAGACT 59.000 36.000 9.17 0.00 34.43 3.24
576 618 8.565896 TCTATTGCAAAAAGAATTCTGAGCTA 57.434 30.769 9.17 8.25 0.00 3.32
577 619 7.458409 TCTATTGCAAAAAGAATTCTGAGCT 57.542 32.000 9.17 0.00 0.00 4.09
578 620 8.699283 ATTCTATTGCAAAAAGAATTCTGAGC 57.301 30.769 24.23 11.11 36.76 4.26
581 623 9.850628 TGAGATTCTATTGCAAAAAGAATTCTG 57.149 29.630 27.71 0.00 39.46 3.02
586 628 9.985730 AACATTGAGATTCTATTGCAAAAAGAA 57.014 25.926 22.53 22.53 34.00 2.52
587 629 9.630098 GAACATTGAGATTCTATTGCAAAAAGA 57.370 29.630 1.71 7.02 0.00 2.52
588 630 9.635520 AGAACATTGAGATTCTATTGCAAAAAG 57.364 29.630 1.71 4.38 33.35 2.27
589 631 9.414295 CAGAACATTGAGATTCTATTGCAAAAA 57.586 29.630 1.71 0.00 33.35 1.94
590 632 8.030692 CCAGAACATTGAGATTCTATTGCAAAA 58.969 33.333 1.71 0.00 33.35 2.44
591 633 7.363181 CCCAGAACATTGAGATTCTATTGCAAA 60.363 37.037 1.71 0.00 33.35 3.68
592 634 6.095860 CCCAGAACATTGAGATTCTATTGCAA 59.904 38.462 0.00 0.00 33.35 4.08
593 635 5.591472 CCCAGAACATTGAGATTCTATTGCA 59.409 40.000 0.00 0.00 33.35 4.08
594 636 5.824624 TCCCAGAACATTGAGATTCTATTGC 59.175 40.000 0.00 0.00 33.35 3.56
595 637 8.461249 AATCCCAGAACATTGAGATTCTATTG 57.539 34.615 0.00 0.00 33.35 1.90
596 638 9.129532 GAAATCCCAGAACATTGAGATTCTATT 57.870 33.333 0.00 0.00 33.35 1.73
597 639 8.501070 AGAAATCCCAGAACATTGAGATTCTAT 58.499 33.333 0.00 0.00 33.35 1.98
598 640 7.865820 AGAAATCCCAGAACATTGAGATTCTA 58.134 34.615 0.00 0.00 33.35 2.10
599 641 6.729428 AGAAATCCCAGAACATTGAGATTCT 58.271 36.000 0.00 0.00 35.51 2.40
600 642 6.827762 AGAGAAATCCCAGAACATTGAGATTC 59.172 38.462 0.00 0.00 0.00 2.52
601 643 6.729428 AGAGAAATCCCAGAACATTGAGATT 58.271 36.000 0.00 0.00 0.00 2.40
602 644 6.324601 AGAGAAATCCCAGAACATTGAGAT 57.675 37.500 0.00 0.00 0.00 2.75
603 645 5.768980 AGAGAAATCCCAGAACATTGAGA 57.231 39.130 0.00 0.00 0.00 3.27
604 646 5.356470 GGAAGAGAAATCCCAGAACATTGAG 59.644 44.000 0.00 0.00 0.00 3.02
605 647 5.256474 GGAAGAGAAATCCCAGAACATTGA 58.744 41.667 0.00 0.00 0.00 2.57
606 648 4.095483 CGGAAGAGAAATCCCAGAACATTG 59.905 45.833 0.00 0.00 33.13 2.82
607 649 4.263506 ACGGAAGAGAAATCCCAGAACATT 60.264 41.667 0.00 0.00 33.13 2.71
608 650 3.264450 ACGGAAGAGAAATCCCAGAACAT 59.736 43.478 0.00 0.00 33.13 2.71
609 651 2.637872 ACGGAAGAGAAATCCCAGAACA 59.362 45.455 0.00 0.00 33.13 3.18
610 652 3.003480 CACGGAAGAGAAATCCCAGAAC 58.997 50.000 0.00 0.00 33.13 3.01
611 653 2.903784 TCACGGAAGAGAAATCCCAGAA 59.096 45.455 0.00 0.00 33.13 3.02
612 654 2.233922 GTCACGGAAGAGAAATCCCAGA 59.766 50.000 0.00 0.00 33.13 3.86
613 655 2.234908 AGTCACGGAAGAGAAATCCCAG 59.765 50.000 0.00 0.00 33.13 4.45
614 656 2.257207 AGTCACGGAAGAGAAATCCCA 58.743 47.619 0.00 0.00 33.13 4.37
615 657 3.336138 AAGTCACGGAAGAGAAATCCC 57.664 47.619 0.00 0.00 33.13 3.85
616 658 6.819146 AGAATAAAGTCACGGAAGAGAAATCC 59.181 38.462 0.00 0.00 31.00 3.01
617 659 7.010645 GGAGAATAAAGTCACGGAAGAGAAATC 59.989 40.741 0.00 0.00 31.00 2.17
618 660 6.819146 GGAGAATAAAGTCACGGAAGAGAAAT 59.181 38.462 0.00 0.00 31.00 2.17
619 661 6.014499 AGGAGAATAAAGTCACGGAAGAGAAA 60.014 38.462 0.00 0.00 31.00 2.52
620 662 5.480772 AGGAGAATAAAGTCACGGAAGAGAA 59.519 40.000 0.00 0.00 31.00 2.87
621 663 5.017490 AGGAGAATAAAGTCACGGAAGAGA 58.983 41.667 0.00 0.00 0.00 3.10
622 664 5.105716 TGAGGAGAATAAAGTCACGGAAGAG 60.106 44.000 0.00 0.00 0.00 2.85
623 665 4.770531 TGAGGAGAATAAAGTCACGGAAGA 59.229 41.667 0.00 0.00 0.00 2.87
624 666 5.073311 TGAGGAGAATAAAGTCACGGAAG 57.927 43.478 0.00 0.00 0.00 3.46
625 667 5.477607 TTGAGGAGAATAAAGTCACGGAA 57.522 39.130 0.00 0.00 0.00 4.30
626 668 5.477607 TTTGAGGAGAATAAAGTCACGGA 57.522 39.130 0.00 0.00 0.00 4.69
627 669 6.149474 ACAATTTGAGGAGAATAAAGTCACGG 59.851 38.462 2.79 0.00 0.00 4.94
628 670 7.133891 ACAATTTGAGGAGAATAAAGTCACG 57.866 36.000 2.79 0.00 0.00 4.35
631 673 9.543018 CGTTTACAATTTGAGGAGAATAAAGTC 57.457 33.333 2.79 0.00 0.00 3.01
632 674 9.280174 TCGTTTACAATTTGAGGAGAATAAAGT 57.720 29.630 2.79 0.00 0.00 2.66
635 677 8.181573 GCATCGTTTACAATTTGAGGAGAATAA 58.818 33.333 2.79 0.00 0.00 1.40
636 678 7.465379 CGCATCGTTTACAATTTGAGGAGAATA 60.465 37.037 2.79 0.00 0.00 1.75
637 679 6.555315 GCATCGTTTACAATTTGAGGAGAAT 58.445 36.000 2.79 0.00 0.00 2.40
638 680 5.390461 CGCATCGTTTACAATTTGAGGAGAA 60.390 40.000 2.79 0.00 0.00 2.87
639 681 4.092821 CGCATCGTTTACAATTTGAGGAGA 59.907 41.667 2.79 0.00 0.00 3.71
640 682 4.334443 CGCATCGTTTACAATTTGAGGAG 58.666 43.478 2.79 0.00 0.00 3.69
641 683 3.126171 CCGCATCGTTTACAATTTGAGGA 59.874 43.478 2.79 0.00 0.00 3.71
642 684 3.425404 CCGCATCGTTTACAATTTGAGG 58.575 45.455 2.79 0.00 0.00 3.86
643 685 2.845967 GCCGCATCGTTTACAATTTGAG 59.154 45.455 2.79 0.00 0.00 3.02
644 686 2.414824 GGCCGCATCGTTTACAATTTGA 60.415 45.455 2.79 0.00 0.00 2.69
645 687 1.917303 GGCCGCATCGTTTACAATTTG 59.083 47.619 0.00 0.00 0.00 2.32
646 688 1.542030 TGGCCGCATCGTTTACAATTT 59.458 42.857 0.00 0.00 0.00 1.82
647 689 1.169577 TGGCCGCATCGTTTACAATT 58.830 45.000 0.00 0.00 0.00 2.32
648 690 1.388547 ATGGCCGCATCGTTTACAAT 58.611 45.000 0.00 0.00 0.00 2.71
649 691 1.169577 AATGGCCGCATCGTTTACAA 58.830 45.000 0.00 0.00 0.00 2.41
650 692 2.025589 TAATGGCCGCATCGTTTACA 57.974 45.000 0.00 0.00 0.00 2.41
651 693 3.619233 AATAATGGCCGCATCGTTTAC 57.381 42.857 0.00 0.00 0.00 2.01
652 694 4.640789 AAAATAATGGCCGCATCGTTTA 57.359 36.364 0.00 0.00 0.00 2.01
653 695 3.518634 AAAATAATGGCCGCATCGTTT 57.481 38.095 0.00 0.00 0.00 3.60
654 696 3.004315 CCTAAAATAATGGCCGCATCGTT 59.996 43.478 0.00 0.00 0.00 3.85
655 697 2.552315 CCTAAAATAATGGCCGCATCGT 59.448 45.455 0.00 0.00 0.00 3.73
656 698 2.811431 TCCTAAAATAATGGCCGCATCG 59.189 45.455 0.00 0.00 0.00 3.84
657 699 4.846779 TTCCTAAAATAATGGCCGCATC 57.153 40.909 0.00 0.00 0.00 3.91
658 700 6.909550 TTATTCCTAAAATAATGGCCGCAT 57.090 33.333 0.00 0.00 0.00 4.73
659 701 6.322712 ACTTTATTCCTAAAATAATGGCCGCA 59.677 34.615 0.00 0.00 0.00 5.69
660 702 6.745116 ACTTTATTCCTAAAATAATGGCCGC 58.255 36.000 0.00 0.00 0.00 6.53
661 703 9.594478 AAAACTTTATTCCTAAAATAATGGCCG 57.406 29.630 0.00 0.00 0.00 6.13
681 723 8.723311 GGCTTTTGTTTTACAACCTTAAAACTT 58.277 29.630 15.73 0.00 45.90 2.66
682 724 8.098286 AGGCTTTTGTTTTACAACCTTAAAACT 58.902 29.630 15.73 0.00 45.90 2.66
683 725 8.259049 AGGCTTTTGTTTTACAACCTTAAAAC 57.741 30.769 10.27 10.27 45.91 2.43
684 726 9.589111 CTAGGCTTTTGTTTTACAACCTTAAAA 57.411 29.630 0.00 0.00 37.90 1.52
685 727 8.968969 TCTAGGCTTTTGTTTTACAACCTTAAA 58.031 29.630 0.00 0.00 37.90 1.52
686 728 8.522542 TCTAGGCTTTTGTTTTACAACCTTAA 57.477 30.769 0.00 0.00 37.90 1.85
687 729 8.522542 TTCTAGGCTTTTGTTTTACAACCTTA 57.477 30.769 0.00 0.00 37.90 2.69
688 730 7.412853 TTCTAGGCTTTTGTTTTACAACCTT 57.587 32.000 0.00 0.00 37.90 3.50
689 731 7.412853 TTTCTAGGCTTTTGTTTTACAACCT 57.587 32.000 0.00 5.77 37.90 3.50
690 732 8.657074 AATTTCTAGGCTTTTGTTTTACAACC 57.343 30.769 0.00 0.00 37.90 3.77
698 740 9.750125 CTCAAGTTTAATTTCTAGGCTTTTGTT 57.250 29.630 0.00 0.00 0.00 2.83
699 741 8.914011 ACTCAAGTTTAATTTCTAGGCTTTTGT 58.086 29.630 0.00 0.00 0.00 2.83
700 742 9.185192 CACTCAAGTTTAATTTCTAGGCTTTTG 57.815 33.333 0.00 0.00 0.00 2.44
701 743 9.131791 TCACTCAAGTTTAATTTCTAGGCTTTT 57.868 29.630 0.00 0.00 0.00 2.27
702 744 8.691661 TCACTCAAGTTTAATTTCTAGGCTTT 57.308 30.769 0.00 0.00 0.00 3.51
703 745 8.568794 GTTCACTCAAGTTTAATTTCTAGGCTT 58.431 33.333 0.00 0.00 0.00 4.35
704 746 7.719633 TGTTCACTCAAGTTTAATTTCTAGGCT 59.280 33.333 0.00 0.00 0.00 4.58
705 747 7.871853 TGTTCACTCAAGTTTAATTTCTAGGC 58.128 34.615 0.00 0.00 0.00 3.93
706 748 9.273016 TCTGTTCACTCAAGTTTAATTTCTAGG 57.727 33.333 0.00 0.00 0.00 3.02
814 858 4.506654 TCTTTCGAATTAAGCGGTATCTGC 59.493 41.667 0.00 0.00 0.00 4.26
833 877 1.602377 CTTCCACGCGTTTTCCTCTTT 59.398 47.619 10.22 0.00 0.00 2.52
838 882 0.883370 ACCTCTTCCACGCGTTTTCC 60.883 55.000 10.22 0.00 0.00 3.13
856 900 5.122396 GGGTTTGTCTAGAATCACACATCAC 59.878 44.000 0.00 0.00 0.00 3.06
906 992 0.883153 TGCTTCGCCGAGTAACACTA 59.117 50.000 0.00 0.00 0.00 2.74
927 1013 0.032678 ACTGTTGTGTCTGCTCTCCG 59.967 55.000 0.00 0.00 0.00 4.63
958 1045 0.759436 AGTCCTCTCACACCACCGTT 60.759 55.000 0.00 0.00 0.00 4.44
963 1052 1.229209 GGGGAGTCCTCTCACACCA 60.229 63.158 9.58 0.00 45.22 4.17
968 1057 0.252284 GAGTTGGGGGAGTCCTCTCA 60.252 60.000 9.48 2.28 42.05 3.27
973 1062 3.400054 CGGGAGTTGGGGGAGTCC 61.400 72.222 0.00 0.00 38.24 3.85
1435 1750 3.917760 CTCGATGTCGGGGCCTCC 61.918 72.222 0.84 0.51 40.29 4.30
1547 1862 3.903714 CAGAGGAAAATTTGGGGGTTCTT 59.096 43.478 0.00 0.00 0.00 2.52
1568 1884 0.179094 ACTCAACGACAGCGAAACCA 60.179 50.000 0.00 0.00 41.64 3.67
1631 1955 2.076863 GGCACAAGCGTGATTTCTAGT 58.923 47.619 6.65 0.00 46.80 2.57
1653 1977 1.335810 AGCACATCAAAGCACACACAG 59.664 47.619 0.00 0.00 0.00 3.66
1795 2119 0.674895 GGAGCACCTTGTTCGAGCAT 60.675 55.000 1.75 0.00 0.00 3.79
1818 2142 3.097342 AGGTGACGGTACCAATAGAGT 57.903 47.619 13.54 0.00 43.37 3.24
1821 2145 4.872124 GGTTTAAGGTGACGGTACCAATAG 59.128 45.833 13.54 0.00 43.37 1.73
1835 2159 3.307199 CGTGATGGGTGTAGGTTTAAGGT 60.307 47.826 0.00 0.00 0.00 3.50
1924 2412 2.035704 TCGCTAGTGGTTTCGGTTACAA 59.964 45.455 2.90 0.00 0.00 2.41
1960 2512 4.543689 TGAGTCCTTGTAATATCCGGAGT 58.456 43.478 11.34 0.00 0.00 3.85
1961 2513 5.531122 TTGAGTCCTTGTAATATCCGGAG 57.469 43.478 11.34 0.00 0.00 4.63
1962 2514 5.943349 TTTGAGTCCTTGTAATATCCGGA 57.057 39.130 6.61 6.61 0.00 5.14
1963 2515 6.113411 ACTTTTGAGTCCTTGTAATATCCGG 58.887 40.000 0.00 0.00 0.00 5.14
1964 2516 6.816640 TGACTTTTGAGTCCTTGTAATATCCG 59.183 38.462 4.29 0.00 37.99 4.18
1965 2517 7.824779 ACTGACTTTTGAGTCCTTGTAATATCC 59.175 37.037 4.29 0.00 37.99 2.59
1966 2518 8.779354 ACTGACTTTTGAGTCCTTGTAATATC 57.221 34.615 4.29 0.00 37.99 1.63
1967 2519 9.574516 AAACTGACTTTTGAGTCCTTGTAATAT 57.425 29.630 4.29 0.00 37.99 1.28
1968 2520 8.974060 AAACTGACTTTTGAGTCCTTGTAATA 57.026 30.769 4.29 0.00 37.99 0.98
1969 2521 7.881775 AAACTGACTTTTGAGTCCTTGTAAT 57.118 32.000 4.29 0.00 37.99 1.89
1970 2522 7.696992 AAAACTGACTTTTGAGTCCTTGTAA 57.303 32.000 4.29 0.00 37.99 2.41
1971 2523 8.974060 ATAAAACTGACTTTTGAGTCCTTGTA 57.026 30.769 4.29 0.00 37.99 2.41
1972 2524 7.556275 TGATAAAACTGACTTTTGAGTCCTTGT 59.444 33.333 4.29 0.00 37.99 3.16
1973 2525 7.930217 TGATAAAACTGACTTTTGAGTCCTTG 58.070 34.615 4.29 0.00 37.99 3.61
1974 2526 8.697507 ATGATAAAACTGACTTTTGAGTCCTT 57.302 30.769 4.29 0.00 37.99 3.36
1975 2527 9.220767 GTATGATAAAACTGACTTTTGAGTCCT 57.779 33.333 4.29 0.00 37.99 3.85
1976 2528 9.220767 AGTATGATAAAACTGACTTTTGAGTCC 57.779 33.333 4.29 0.00 37.99 3.85
1978 2530 9.220767 GGAGTATGATAAAACTGACTTTTGAGT 57.779 33.333 0.00 0.00 33.84 3.41
1979 2531 9.219603 TGGAGTATGATAAAACTGACTTTTGAG 57.780 33.333 0.00 0.00 33.84 3.02
1980 2532 9.219603 CTGGAGTATGATAAAACTGACTTTTGA 57.780 33.333 0.00 0.00 33.84 2.69
1981 2533 9.219603 TCTGGAGTATGATAAAACTGACTTTTG 57.780 33.333 0.00 0.00 33.84 2.44
1982 2534 9.965902 ATCTGGAGTATGATAAAACTGACTTTT 57.034 29.630 0.00 0.00 36.06 2.27
1999 2551 9.642343 ACACATACTCTTGTTATATCTGGAGTA 57.358 33.333 13.48 13.48 39.51 2.59
2000 2552 8.540507 ACACATACTCTTGTTATATCTGGAGT 57.459 34.615 0.00 0.00 37.69 3.85
2012 2564 9.684448 CATTCGAGATATAACACATACTCTTGT 57.316 33.333 0.00 0.00 0.00 3.16
2013 2565 9.684448 ACATTCGAGATATAACACATACTCTTG 57.316 33.333 0.00 0.00 0.00 3.02
2015 2567 9.684448 CAACATTCGAGATATAACACATACTCT 57.316 33.333 0.00 0.00 0.00 3.24
2016 2568 9.464714 ACAACATTCGAGATATAACACATACTC 57.535 33.333 0.00 0.00 0.00 2.59
2017 2569 9.249457 CACAACATTCGAGATATAACACATACT 57.751 33.333 0.00 0.00 0.00 2.12
2018 2570 9.244799 TCACAACATTCGAGATATAACACATAC 57.755 33.333 0.00 0.00 0.00 2.39
2019 2571 9.244799 GTCACAACATTCGAGATATAACACATA 57.755 33.333 0.00 0.00 0.00 2.29
2020 2572 7.043391 CGTCACAACATTCGAGATATAACACAT 60.043 37.037 0.00 0.00 0.00 3.21
2021 2573 6.252655 CGTCACAACATTCGAGATATAACACA 59.747 38.462 0.00 0.00 0.00 3.72
2033 2585 2.036217 CTTTGCACGTCACAACATTCG 58.964 47.619 0.10 0.00 0.00 3.34
2038 2590 2.535934 TCAACTTTGCACGTCACAAC 57.464 45.000 0.10 0.00 0.00 3.32
2042 2594 1.403323 TGCATTCAACTTTGCACGTCA 59.597 42.857 0.00 0.00 43.54 4.35
2458 3013 3.595173 AGCATACAGTATTGCAACGACA 58.405 40.909 0.00 0.00 0.00 4.35
2498 3053 8.466086 AAATTTCCTCAAACGCAGAATAAATC 57.534 30.769 0.00 0.00 0.00 2.17
2502 3057 6.567687 TGAAATTTCCTCAAACGCAGAATA 57.432 33.333 15.48 0.00 0.00 1.75
2520 3075 7.450903 AGTTTGTGTAGTAAGGTAGCTGAAAT 58.549 34.615 0.00 0.00 0.00 2.17
2522 3077 6.415206 AGTTTGTGTAGTAAGGTAGCTGAA 57.585 37.500 0.00 0.00 0.00 3.02
2553 3108 2.915604 AGAGAGAAGGGAATGAGCCAAA 59.084 45.455 0.00 0.00 0.00 3.28
2556 3111 3.452627 TGTAAGAGAGAAGGGAATGAGCC 59.547 47.826 0.00 0.00 0.00 4.70
2663 3218 0.615544 TCATAACCCCCTCGTCCGTT 60.616 55.000 0.00 0.00 0.00 4.44
2666 3221 1.071857 GGAATCATAACCCCCTCGTCC 59.928 57.143 0.00 0.00 0.00 4.79
2669 3224 3.197983 GGATAGGAATCATAACCCCCTCG 59.802 52.174 0.00 0.00 33.41 4.63
2729 3284 2.166459 CCTTACAGCATCCTCACGAAGA 59.834 50.000 0.00 0.00 0.00 2.87
2842 3410 7.418337 TCACTAAACTATATGCTCACTTCCA 57.582 36.000 0.00 0.00 0.00 3.53
2843 3411 8.144478 TGATCACTAAACTATATGCTCACTTCC 58.856 37.037 0.00 0.00 0.00 3.46
2844 3412 9.703892 ATGATCACTAAACTATATGCTCACTTC 57.296 33.333 0.00 0.00 0.00 3.01
2856 3424 9.778741 CCCTTTGCTTATATGATCACTAAACTA 57.221 33.333 0.00 0.00 0.00 2.24
2857 3425 8.275040 ACCCTTTGCTTATATGATCACTAAACT 58.725 33.333 0.00 0.00 0.00 2.66
2858 3426 8.451908 ACCCTTTGCTTATATGATCACTAAAC 57.548 34.615 0.00 0.00 0.00 2.01
2862 3430 9.289782 GAAATACCCTTTGCTTATATGATCACT 57.710 33.333 0.00 0.00 0.00 3.41
2863 3431 8.515414 GGAAATACCCTTTGCTTATATGATCAC 58.485 37.037 0.00 0.00 0.00 3.06
2864 3432 8.448008 AGGAAATACCCTTTGCTTATATGATCA 58.552 33.333 0.00 0.00 40.05 2.92
2865 3433 8.870075 AGGAAATACCCTTTGCTTATATGATC 57.130 34.615 0.00 0.00 40.05 2.92
2867 3435 9.959721 GATAGGAAATACCCTTTGCTTATATGA 57.040 33.333 0.00 0.00 40.05 2.15
2868 3436 8.883731 CGATAGGAAATACCCTTTGCTTATATG 58.116 37.037 0.00 0.00 40.05 1.78
2890 3458 8.297426 CACTAAACTATATGCTCACTTCCGATA 58.703 37.037 0.00 0.00 0.00 2.92
2892 3460 6.320418 TCACTAAACTATATGCTCACTTCCGA 59.680 38.462 0.00 0.00 0.00 4.55
2893 3461 6.504398 TCACTAAACTATATGCTCACTTCCG 58.496 40.000 0.00 0.00 0.00 4.30
2894 3462 8.364142 AGATCACTAAACTATATGCTCACTTCC 58.636 37.037 0.00 0.00 0.00 3.46
2920 3488 9.682465 ACATGTATAGTTCTCTCTAGTGTAACA 57.318 33.333 0.00 0.00 41.43 2.41
2939 3507 6.832520 TTTGTGAACTGGCATAACATGTAT 57.167 33.333 0.00 0.00 0.00 2.29
2941 3509 5.726980 ATTTGTGAACTGGCATAACATGT 57.273 34.783 0.00 0.00 0.00 3.21
3036 3604 2.099921 GCAGAGCATCGGAAGACTAGAA 59.900 50.000 0.00 0.00 46.97 2.10
3107 3675 2.025155 GATAGCTCCACTCCGTCTTCA 58.975 52.381 0.00 0.00 0.00 3.02
3161 3729 2.605818 TCGTAGCCATTTCGTAATGCAC 59.394 45.455 9.09 4.03 39.87 4.57
3167 3735 2.605818 GTGCATTCGTAGCCATTTCGTA 59.394 45.455 0.00 0.00 0.00 3.43
3182 3750 0.030638 GTGGACAGTTTGCGTGCATT 59.969 50.000 0.00 0.00 37.05 3.56
3265 3833 6.067217 ACAGGCCTTGAGTATGAAAGTTAT 57.933 37.500 0.00 0.00 0.00 1.89
3272 3840 2.771372 TGCATACAGGCCTTGAGTATGA 59.229 45.455 31.43 19.63 44.83 2.15
3534 4132 7.392393 AGTCCATAACCAAACGTTAAGCTATTT 59.608 33.333 0.00 0.00 40.32 1.40
3586 4198 9.512588 CTCCTATTCTTTACATCCATAAGCAAT 57.487 33.333 0.00 0.00 0.00 3.56
3587 4199 8.494433 ACTCCTATTCTTTACATCCATAAGCAA 58.506 33.333 0.00 0.00 0.00 3.91
3588 4200 7.933577 CACTCCTATTCTTTACATCCATAAGCA 59.066 37.037 0.00 0.00 0.00 3.91
3589 4201 8.150945 TCACTCCTATTCTTTACATCCATAAGC 58.849 37.037 0.00 0.00 0.00 3.09
3622 4236 2.108168 ACCCAGCTGCTTCTACGATTA 58.892 47.619 8.66 0.00 0.00 1.75
3671 4285 7.448777 TGTAGTAAACAGAGTCATCTTCAGACT 59.551 37.037 0.00 0.00 40.12 3.24
3742 4356 3.634568 CAGAACCTAGGAGTATCTGCG 57.365 52.381 17.98 0.00 32.05 5.18
3744 4358 3.300388 TGGCAGAACCTAGGAGTATCTG 58.700 50.000 17.98 21.20 40.30 2.90
3745 4359 3.689872 TGGCAGAACCTAGGAGTATCT 57.310 47.619 17.98 10.28 40.22 1.98
3776 4390 3.726557 TGGTTCAGATGGAAAGCTGAT 57.273 42.857 0.00 0.00 40.51 2.90
3777 4391 3.072915 TCTTGGTTCAGATGGAAAGCTGA 59.927 43.478 0.00 0.00 39.24 4.26
3778 4392 3.415212 TCTTGGTTCAGATGGAAAGCTG 58.585 45.455 0.00 0.00 37.23 4.24
3779 4393 3.795688 TCTTGGTTCAGATGGAAAGCT 57.204 42.857 0.00 0.00 37.23 3.74
3780 4394 4.012374 TGATCTTGGTTCAGATGGAAAGC 58.988 43.478 0.00 0.00 37.23 3.51
3781 4395 6.579666 TTTGATCTTGGTTCAGATGGAAAG 57.420 37.500 0.00 0.00 37.23 2.62
3782 4396 7.543359 AATTTGATCTTGGTTCAGATGGAAA 57.457 32.000 0.00 0.00 37.23 3.13
3783 4397 7.890127 AGTAATTTGATCTTGGTTCAGATGGAA 59.110 33.333 0.00 0.00 33.36 3.53
3784 4398 7.405292 AGTAATTTGATCTTGGTTCAGATGGA 58.595 34.615 0.00 0.00 33.36 3.41
3785 4399 7.636150 AGTAATTTGATCTTGGTTCAGATGG 57.364 36.000 0.00 0.00 33.36 3.51
3789 4403 8.352201 TGAACAAGTAATTTGATCTTGGTTCAG 58.648 33.333 0.00 0.00 38.90 3.02
3880 4495 6.445357 TTTTTAAAGGACCGATAGCAATCC 57.555 37.500 0.00 0.00 0.00 3.01
3903 4518 5.639082 GTGAATTTCCGATGGCAATCTTTTT 59.361 36.000 0.00 0.00 0.00 1.94
3904 4519 5.170748 GTGAATTTCCGATGGCAATCTTTT 58.829 37.500 0.00 0.00 0.00 2.27
3905 4520 4.381932 GGTGAATTTCCGATGGCAATCTTT 60.382 41.667 0.00 0.00 0.00 2.52
3906 4521 3.131046 GGTGAATTTCCGATGGCAATCTT 59.869 43.478 0.00 0.00 0.00 2.40
3907 4522 2.689983 GGTGAATTTCCGATGGCAATCT 59.310 45.455 0.00 0.00 0.00 2.40
3908 4523 2.689983 AGGTGAATTTCCGATGGCAATC 59.310 45.455 0.00 0.00 0.00 2.67
3909 4524 2.738743 AGGTGAATTTCCGATGGCAAT 58.261 42.857 0.00 0.00 0.00 3.56
3910 4525 2.214376 AGGTGAATTTCCGATGGCAA 57.786 45.000 0.00 0.00 0.00 4.52
3911 4526 2.639065 GTAGGTGAATTTCCGATGGCA 58.361 47.619 0.00 0.00 0.00 4.92
3912 4527 1.597663 CGTAGGTGAATTTCCGATGGC 59.402 52.381 0.00 0.00 0.00 4.40
3971 4586 4.005650 GGATGTTCAGCTCACAATTCTCA 58.994 43.478 0.00 0.00 0.00 3.27
3988 4603 0.921896 CAATGGGGAGTGAGGGATGT 59.078 55.000 0.00 0.00 0.00 3.06
4022 4637 2.640826 ACACTTATTTTGGACGGAGGGA 59.359 45.455 0.00 0.00 0.00 4.20
4023 4638 3.007635 GACACTTATTTTGGACGGAGGG 58.992 50.000 0.00 0.00 0.00 4.30
4024 4639 3.933332 GAGACACTTATTTTGGACGGAGG 59.067 47.826 0.00 0.00 0.00 4.30
4025 4640 4.566004 TGAGACACTTATTTTGGACGGAG 58.434 43.478 0.00 0.00 0.00 4.63
4026 4641 4.610605 TGAGACACTTATTTTGGACGGA 57.389 40.909 0.00 0.00 0.00 4.69
4027 4642 4.755123 AGTTGAGACACTTATTTTGGACGG 59.245 41.667 0.00 0.00 0.00 4.79
4028 4643 5.924475 AGTTGAGACACTTATTTTGGACG 57.076 39.130 0.00 0.00 0.00 4.79
4029 4644 7.480810 ACAAAGTTGAGACACTTATTTTGGAC 58.519 34.615 0.00 0.00 35.87 4.02
4030 4645 7.639113 ACAAAGTTGAGACACTTATTTTGGA 57.361 32.000 0.00 0.00 35.87 3.53
4031 4646 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
4037 4652 9.525409 GAAGTTAGTACAAAGTTGAGACACTTA 57.475 33.333 0.00 0.00 35.87 2.24
4038 4653 8.038944 TGAAGTTAGTACAAAGTTGAGACACTT 58.961 33.333 0.00 3.16 38.74 3.16
4039 4654 7.491696 GTGAAGTTAGTACAAAGTTGAGACACT 59.508 37.037 0.00 0.00 0.00 3.55
4040 4655 7.514747 CGTGAAGTTAGTACAAAGTTGAGACAC 60.515 40.741 0.00 0.00 0.00 3.67
4041 4656 6.474427 CGTGAAGTTAGTACAAAGTTGAGACA 59.526 38.462 0.00 0.00 0.00 3.41
4042 4657 6.074463 CCGTGAAGTTAGTACAAAGTTGAGAC 60.074 42.308 0.00 0.00 0.00 3.36
4043 4658 5.981315 CCGTGAAGTTAGTACAAAGTTGAGA 59.019 40.000 0.00 0.00 0.00 3.27
4044 4659 5.981315 TCCGTGAAGTTAGTACAAAGTTGAG 59.019 40.000 0.00 0.00 0.00 3.02
4045 4660 5.904941 TCCGTGAAGTTAGTACAAAGTTGA 58.095 37.500 0.00 0.00 0.00 3.18
4046 4661 5.176958 CCTCCGTGAAGTTAGTACAAAGTTG 59.823 44.000 0.00 0.00 0.00 3.16
4047 4662 5.295152 CCTCCGTGAAGTTAGTACAAAGTT 58.705 41.667 0.00 0.00 0.00 2.66
4048 4663 4.262335 CCCTCCGTGAAGTTAGTACAAAGT 60.262 45.833 0.00 0.00 0.00 2.66
4049 4664 4.021719 TCCCTCCGTGAAGTTAGTACAAAG 60.022 45.833 0.00 0.00 0.00 2.77
4050 4665 3.896888 TCCCTCCGTGAAGTTAGTACAAA 59.103 43.478 0.00 0.00 0.00 2.83
4051 4666 3.499338 TCCCTCCGTGAAGTTAGTACAA 58.501 45.455 0.00 0.00 0.00 2.41
4052 4667 3.087031 CTCCCTCCGTGAAGTTAGTACA 58.913 50.000 0.00 0.00 0.00 2.90
4053 4668 3.087781 ACTCCCTCCGTGAAGTTAGTAC 58.912 50.000 0.00 0.00 0.00 2.73
4054 4669 3.446442 ACTCCCTCCGTGAAGTTAGTA 57.554 47.619 0.00 0.00 0.00 1.82
4055 4670 2.305858 ACTCCCTCCGTGAAGTTAGT 57.694 50.000 0.00 0.00 0.00 2.24
4056 4671 3.087031 TGTACTCCCTCCGTGAAGTTAG 58.913 50.000 0.00 0.00 0.00 2.34
4057 4672 3.159213 TGTACTCCCTCCGTGAAGTTA 57.841 47.619 0.00 0.00 0.00 2.24
4058 4673 2.005370 TGTACTCCCTCCGTGAAGTT 57.995 50.000 0.00 0.00 0.00 2.66
4059 4674 2.005370 TTGTACTCCCTCCGTGAAGT 57.995 50.000 0.00 0.00 0.00 3.01
4060 4675 3.064931 GTTTTGTACTCCCTCCGTGAAG 58.935 50.000 0.00 0.00 0.00 3.02
4061 4676 2.435069 TGTTTTGTACTCCCTCCGTGAA 59.565 45.455 0.00 0.00 0.00 3.18
4062 4677 2.036733 CTGTTTTGTACTCCCTCCGTGA 59.963 50.000 0.00 0.00 0.00 4.35
4063 4678 2.224209 ACTGTTTTGTACTCCCTCCGTG 60.224 50.000 0.00 0.00 0.00 4.94
4064 4679 2.044758 ACTGTTTTGTACTCCCTCCGT 58.955 47.619 0.00 0.00 0.00 4.69
4065 4680 2.833631 ACTGTTTTGTACTCCCTCCG 57.166 50.000 0.00 0.00 0.00 4.63
4066 4681 4.566987 CACTACTGTTTTGTACTCCCTCC 58.433 47.826 0.00 0.00 0.00 4.30
4067 4682 3.995048 GCACTACTGTTTTGTACTCCCTC 59.005 47.826 0.00 0.00 0.00 4.30
4068 4683 3.389983 TGCACTACTGTTTTGTACTCCCT 59.610 43.478 0.00 0.00 0.00 4.20
4069 4684 3.735591 TGCACTACTGTTTTGTACTCCC 58.264 45.455 0.00 0.00 0.00 4.30
4070 4685 4.213482 CCTTGCACTACTGTTTTGTACTCC 59.787 45.833 0.00 0.00 0.00 3.85
4071 4686 4.814771 ACCTTGCACTACTGTTTTGTACTC 59.185 41.667 0.00 0.00 0.00 2.59
4072 4687 4.777463 ACCTTGCACTACTGTTTTGTACT 58.223 39.130 0.00 0.00 0.00 2.73
4073 4688 5.524646 TGTACCTTGCACTACTGTTTTGTAC 59.475 40.000 0.00 0.00 0.00 2.90
4074 4689 5.672503 TGTACCTTGCACTACTGTTTTGTA 58.327 37.500 0.00 0.00 0.00 2.41
4075 4690 4.519213 TGTACCTTGCACTACTGTTTTGT 58.481 39.130 0.00 0.00 0.00 2.83
4076 4691 5.493133 TTGTACCTTGCACTACTGTTTTG 57.507 39.130 0.00 0.00 0.00 2.44
4079 4694 4.968259 TCATTGTACCTTGCACTACTGTT 58.032 39.130 0.00 0.00 0.00 3.16
4122 4748 2.222976 GCTTTCATCATGTCAGCTCACG 60.223 50.000 4.15 0.00 0.00 4.35
4143 4769 5.821516 TTTGTAGTGTTGTTTACCACTGG 57.178 39.130 2.72 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.