Multiple sequence alignment - TraesCS6B01G327700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G327700 chr6B 100.000 3905 0 0 1 3905 577361309 577365213 0.000000e+00 7212.0
1 TraesCS6B01G327700 chr6B 86.166 253 16 9 7 259 640128313 640128080 5.010000e-64 255.0
2 TraesCS6B01G327700 chr6B 94.545 55 2 1 3315 3368 539175744 539175690 2.500000e-12 84.2
3 TraesCS6B01G327700 chr6D 91.822 3008 168 31 350 3310 386437996 386440972 0.000000e+00 4120.0
4 TraesCS6B01G327700 chr6D 82.941 510 27 14 3363 3859 386440970 386441432 4.700000e-109 405.0
5 TraesCS6B01G327700 chr6D 96.154 52 1 1 3322 3372 457543788 457543839 2.500000e-12 84.2
6 TraesCS6B01G327700 chr6D 97.143 35 1 0 3871 3905 386441474 386441508 4.210000e-05 60.2
7 TraesCS6B01G327700 chr6A 93.790 2673 134 12 643 3299 531520135 531522791 0.000000e+00 3988.0
8 TraesCS6B01G327700 chr6A 82.975 558 30 25 3363 3905 531522796 531523303 9.960000e-121 444.0
9 TraesCS6B01G327700 chr6A 80.062 321 41 17 333 638 531519789 531520101 2.360000e-52 217.0
10 TraesCS6B01G327700 chr3B 88.976 254 13 2 7 260 27264625 27264387 2.280000e-77 300.0
11 TraesCS6B01G327700 chr3B 89.200 250 13 8 7 256 155596757 155596992 2.280000e-77 300.0
12 TraesCS6B01G327700 chr3B 87.600 250 17 1 7 256 11927097 11927332 1.070000e-70 278.0
13 TraesCS6B01G327700 chr7B 88.583 254 14 6 7 259 376805570 376805331 1.060000e-75 294.0
14 TraesCS6B01G327700 chr7B 88.095 252 16 1 7 258 47731872 47732109 1.780000e-73 287.0
15 TraesCS6B01G327700 chr7B 86.207 174 10 8 83 256 6241781 6241940 4.010000e-40 176.0
16 TraesCS6B01G327700 chr5B 88.538 253 13 7 7 259 562337924 562337688 3.820000e-75 292.0
17 TraesCS6B01G327700 chr5B 88.400 250 13 7 7 256 19660654 19660421 1.780000e-73 287.0
18 TraesCS6B01G327700 chr5B 87.302 252 16 2 7 256 473886106 473885869 1.380000e-69 274.0
19 TraesCS6B01G327700 chr3A 88.400 250 14 9 7 256 646114182 646113948 1.780000e-73 287.0
20 TraesCS6B01G327700 chr3A 92.982 57 3 1 3309 3364 584756339 584756395 8.990000e-12 82.4
21 TraesCS6B01G327700 chr2B 88.400 250 14 2 7 256 359038537 359038303 1.780000e-73 287.0
22 TraesCS6B01G327700 chr2B 87.747 253 16 9 7 259 601750137 601749900 8.260000e-72 281.0
23 TraesCS6B01G327700 chr4B 88.618 246 13 9 7 252 626928286 626928516 6.390000e-73 285.0
24 TraesCS6B01G327700 chr4B 86.585 246 18 2 7 252 445239995 445240225 1.390000e-64 257.0
25 TraesCS6B01G327700 chr4B 91.525 59 3 2 3309 3365 479678630 479678688 3.230000e-11 80.5
26 TraesCS6B01G327700 chrUn 87.500 256 18 1 7 262 36297341 36297100 2.300000e-72 283.0
27 TraesCS6B01G327700 chr1B 85.882 255 21 3 2 256 42245198 42245437 1.390000e-64 257.0
28 TraesCS6B01G327700 chr4D 93.103 58 1 3 3309 3365 5527969 5527914 8.990000e-12 82.4
29 TraesCS6B01G327700 chr2A 90.625 64 2 2 3309 3368 27422801 27422738 8.990000e-12 82.4
30 TraesCS6B01G327700 chr7D 91.667 60 2 2 3309 3365 497271250 497271191 3.230000e-11 80.5
31 TraesCS6B01G327700 chr5A 90.323 62 5 1 3305 3365 5701543 5701604 3.230000e-11 80.5
32 TraesCS6B01G327700 chr2D 97.778 45 0 1 3322 3365 124806605 124806561 4.180000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G327700 chr6B 577361309 577365213 3904 False 7212.000000 7212 100.000000 1 3905 1 chr6B.!!$F1 3904
1 TraesCS6B01G327700 chr6D 386437996 386441508 3512 False 1528.400000 4120 90.635333 350 3905 3 chr6D.!!$F2 3555
2 TraesCS6B01G327700 chr6A 531519789 531523303 3514 False 1549.666667 3988 85.609000 333 3905 3 chr6A.!!$F1 3572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.028770 CAAAGAAAAGTGCACGCGGA 59.971 50.0 12.47 0.00 0.00 5.54 F
95 96 0.028902 AAAGAAAAGTGCACGCGGAC 59.971 50.0 12.47 3.78 0.00 4.79 F
345 346 0.036875 GAAGGTCTCTTGGTGGGGTG 59.963 60.0 0.00 0.00 32.52 4.61 F
392 394 0.109086 AGTGGAGAAGTGATGCGTCG 60.109 55.0 0.58 0.00 0.00 5.12 F
395 397 0.109272 GGAGAAGTGATGCGTCGTGA 60.109 55.0 0.58 0.00 0.00 4.35 F
438 447 0.249120 TCTTGTGGGTAGCCATGTCG 59.751 55.0 18.29 6.55 0.00 4.35 F
2529 2592 0.035739 TTGCCCGGTTACTGTTCCTC 59.964 55.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2050 0.667487 TCGAGCGCCTCTTCACAAAG 60.667 55.000 2.29 0.0 0.00 2.77 R
2184 2247 3.164268 CTCCATCAAACCACATTTCCCA 58.836 45.455 0.00 0.0 0.00 4.37 R
2318 2381 2.028130 TGTTTGCGGACTCCATTTGTT 58.972 42.857 0.00 0.0 0.00 2.83 R
2472 2535 2.647529 TTGCGTACATGTCGATCAGT 57.352 45.000 17.91 0.0 0.00 3.41 R
2529 2592 1.827969 AGGTTCCTCTCGTTCATCCTG 59.172 52.381 0.00 0.0 0.00 3.86 R
2622 2685 3.040206 GCAGGCCAGCTCCATCTGA 62.040 63.158 13.78 0.0 36.19 3.27 R
3594 3679 0.029035 CAGCGCATCAGCTTTCCATC 59.971 55.000 11.47 0.0 46.80 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.926860 CGCATCACTAGTCAAAATGTGA 57.073 40.909 0.00 0.00 42.50 3.58
22 23 5.475273 CGCATCACTAGTCAAAATGTGAT 57.525 39.130 0.00 0.00 46.92 3.06
29 30 9.842775 ATCACTAGTCAAAATGTGATGATGTAT 57.157 29.630 6.66 0.00 45.05 2.29
30 31 9.671279 TCACTAGTCAAAATGTGATGATGTATT 57.329 29.630 0.00 0.00 38.90 1.89
31 32 9.712359 CACTAGTCAAAATGTGATGATGTATTG 57.288 33.333 0.00 0.00 38.90 1.90
32 33 9.453572 ACTAGTCAAAATGTGATGATGTATTGT 57.546 29.630 0.00 0.00 38.90 2.71
33 34 9.926751 CTAGTCAAAATGTGATGATGTATTGTC 57.073 33.333 0.00 0.00 38.90 3.18
34 35 8.339344 AGTCAAAATGTGATGATGTATTGTCA 57.661 30.769 0.00 0.00 38.90 3.58
35 36 8.963725 AGTCAAAATGTGATGATGTATTGTCAT 58.036 29.630 0.00 0.00 38.90 3.06
36 37 9.016623 GTCAAAATGTGATGATGTATTGTCATG 57.983 33.333 0.00 0.00 38.90 3.07
37 38 8.741841 TCAAAATGTGATGATGTATTGTCATGT 58.258 29.630 0.00 0.00 36.49 3.21
41 42 9.563748 AATGTGATGATGTATTGTCATGTATCA 57.436 29.630 0.00 0.00 36.49 2.15
42 43 8.961294 TGTGATGATGTATTGTCATGTATCAA 57.039 30.769 0.00 0.00 36.49 2.57
43 44 9.393512 TGTGATGATGTATTGTCATGTATCAAA 57.606 29.630 0.00 0.00 36.49 2.69
91 92 2.956469 TGCAAAGAAAAGTGCACGC 58.044 47.368 12.01 6.67 45.52 5.34
92 93 0.865218 TGCAAAGAAAAGTGCACGCG 60.865 50.000 12.01 3.53 45.52 6.01
93 94 1.539776 GCAAAGAAAAGTGCACGCGG 61.540 55.000 12.47 0.00 40.58 6.46
94 95 0.028770 CAAAGAAAAGTGCACGCGGA 59.971 50.000 12.47 0.00 0.00 5.54
95 96 0.028902 AAAGAAAAGTGCACGCGGAC 59.971 50.000 12.47 3.78 0.00 4.79
96 97 1.092921 AAGAAAAGTGCACGCGGACA 61.093 50.000 12.47 4.87 35.57 4.02
97 98 1.092921 AGAAAAGTGCACGCGGACAA 61.093 50.000 12.47 0.00 35.57 3.18
98 99 0.657368 GAAAAGTGCACGCGGACAAG 60.657 55.000 12.47 0.00 35.57 3.16
99 100 1.092921 AAAAGTGCACGCGGACAAGA 61.093 50.000 12.47 0.00 35.57 3.02
100 101 0.884704 AAAGTGCACGCGGACAAGAT 60.885 50.000 12.47 0.00 35.57 2.40
101 102 1.568612 AAGTGCACGCGGACAAGATG 61.569 55.000 12.47 0.00 35.57 2.90
102 103 3.422303 TGCACGCGGACAAGATGC 61.422 61.111 12.47 10.12 36.81 3.91
110 111 4.467084 GACAAGATGCGGCCGGGA 62.467 66.667 29.38 9.52 0.00 5.14
111 112 3.757248 GACAAGATGCGGCCGGGAT 62.757 63.158 29.38 14.47 0.00 3.85
112 113 3.282157 CAAGATGCGGCCGGGATG 61.282 66.667 29.38 0.00 0.00 3.51
113 114 3.797353 AAGATGCGGCCGGGATGT 61.797 61.111 29.38 10.10 0.00 3.06
114 115 4.552365 AGATGCGGCCGGGATGTG 62.552 66.667 29.38 0.00 0.00 3.21
115 116 4.856801 GATGCGGCCGGGATGTGT 62.857 66.667 29.38 0.00 0.00 3.72
116 117 4.856801 ATGCGGCCGGGATGTGTC 62.857 66.667 29.38 7.83 0.00 3.67
168 169 3.508840 GGCGCATCCCGGAAACTG 61.509 66.667 10.83 0.00 37.44 3.16
169 170 4.179579 GCGCATCCCGGAAACTGC 62.180 66.667 0.73 5.16 37.44 4.40
170 171 3.508840 CGCATCCCGGAAACTGCC 61.509 66.667 0.73 0.00 0.00 4.85
171 172 3.140814 GCATCCCGGAAACTGCCC 61.141 66.667 0.73 0.00 0.00 5.36
172 173 2.824041 CATCCCGGAAACTGCCCG 60.824 66.667 0.73 0.00 46.10 6.13
177 178 3.047877 CGGAAACTGCCCGGACAC 61.048 66.667 0.73 0.00 43.05 3.67
178 179 3.047877 GGAAACTGCCCGGACACG 61.048 66.667 0.73 0.00 40.55 4.49
179 180 2.029964 GAAACTGCCCGGACACGA 59.970 61.111 0.73 0.00 44.60 4.35
180 181 2.280592 AAACTGCCCGGACACGAC 60.281 61.111 0.73 0.00 44.60 4.34
181 182 3.819877 AAACTGCCCGGACACGACC 62.820 63.158 0.73 0.00 44.60 4.79
186 187 4.157120 CCCGGACACGACCCCATC 62.157 72.222 0.73 0.00 44.60 3.51
187 188 4.157120 CCGGACACGACCCCATCC 62.157 72.222 0.00 0.00 44.60 3.51
188 189 4.157120 CGGACACGACCCCATCCC 62.157 72.222 0.00 0.00 44.60 3.85
189 190 3.793888 GGACACGACCCCATCCCC 61.794 72.222 0.00 0.00 0.00 4.81
190 191 3.793888 GACACGACCCCATCCCCC 61.794 72.222 0.00 0.00 0.00 5.40
191 192 4.348495 ACACGACCCCATCCCCCT 62.348 66.667 0.00 0.00 0.00 4.79
192 193 2.041301 CACGACCCCATCCCCCTA 60.041 66.667 0.00 0.00 0.00 3.53
193 194 2.041197 ACGACCCCATCCCCCTAC 60.041 66.667 0.00 0.00 0.00 3.18
194 195 2.847715 CGACCCCATCCCCCTACC 60.848 72.222 0.00 0.00 0.00 3.18
195 196 2.449911 GACCCCATCCCCCTACCC 60.450 72.222 0.00 0.00 0.00 3.69
196 197 3.306075 ACCCCATCCCCCTACCCA 61.306 66.667 0.00 0.00 0.00 4.51
197 198 2.045474 CCCCATCCCCCTACCCAA 59.955 66.667 0.00 0.00 0.00 4.12
198 199 1.624310 CCCCATCCCCCTACCCAAA 60.624 63.158 0.00 0.00 0.00 3.28
199 200 1.618586 CCCATCCCCCTACCCAAAC 59.381 63.158 0.00 0.00 0.00 2.93
200 201 1.218439 CCCATCCCCCTACCCAAACA 61.218 60.000 0.00 0.00 0.00 2.83
201 202 0.258774 CCATCCCCCTACCCAAACAG 59.741 60.000 0.00 0.00 0.00 3.16
202 203 1.295020 CATCCCCCTACCCAAACAGA 58.705 55.000 0.00 0.00 0.00 3.41
203 204 1.064685 CATCCCCCTACCCAAACAGAC 60.065 57.143 0.00 0.00 0.00 3.51
204 205 0.104356 TCCCCCTACCCAAACAGACA 60.104 55.000 0.00 0.00 0.00 3.41
205 206 0.328258 CCCCCTACCCAAACAGACAG 59.672 60.000 0.00 0.00 0.00 3.51
206 207 1.358152 CCCCTACCCAAACAGACAGA 58.642 55.000 0.00 0.00 0.00 3.41
207 208 1.702957 CCCCTACCCAAACAGACAGAA 59.297 52.381 0.00 0.00 0.00 3.02
208 209 2.308866 CCCCTACCCAAACAGACAGAAT 59.691 50.000 0.00 0.00 0.00 2.40
209 210 3.610911 CCCTACCCAAACAGACAGAATC 58.389 50.000 0.00 0.00 0.00 2.52
210 211 3.264450 CCCTACCCAAACAGACAGAATCT 59.736 47.826 0.00 0.00 38.66 2.40
221 222 3.403038 AGACAGAATCTGGACAAAACGG 58.597 45.455 15.38 0.00 35.81 4.44
222 223 3.071023 AGACAGAATCTGGACAAAACGGA 59.929 43.478 15.38 0.00 35.81 4.69
223 224 3.139077 ACAGAATCTGGACAAAACGGAC 58.861 45.455 15.38 0.00 35.51 4.79
224 225 2.157668 CAGAATCTGGACAAAACGGACG 59.842 50.000 1.53 0.00 0.00 4.79
225 226 2.140717 GAATCTGGACAAAACGGACGT 58.859 47.619 0.00 0.00 0.00 4.34
226 227 2.249844 ATCTGGACAAAACGGACGTT 57.750 45.000 3.99 3.99 40.45 3.99
227 228 1.574134 TCTGGACAAAACGGACGTTC 58.426 50.000 10.76 0.00 37.35 3.95
228 229 1.134759 TCTGGACAAAACGGACGTTCA 60.135 47.619 10.76 3.45 37.35 3.18
229 230 1.871039 CTGGACAAAACGGACGTTCAT 59.129 47.619 10.76 0.51 37.35 2.57
230 231 2.289547 CTGGACAAAACGGACGTTCATT 59.710 45.455 10.76 0.00 37.35 2.57
231 232 2.683867 TGGACAAAACGGACGTTCATTT 59.316 40.909 10.76 0.00 37.35 2.32
232 233 3.040099 GGACAAAACGGACGTTCATTTG 58.960 45.455 16.56 16.56 37.35 2.32
233 234 3.040099 GACAAAACGGACGTTCATTTGG 58.960 45.455 20.28 7.51 37.35 3.28
234 235 2.223618 ACAAAACGGACGTTCATTTGGG 60.224 45.455 20.28 6.45 37.35 4.12
235 236 0.955905 AAACGGACGTTCATTTGGGG 59.044 50.000 10.76 0.00 37.35 4.96
236 237 0.179012 AACGGACGTTCATTTGGGGT 60.179 50.000 3.99 0.00 32.09 4.95
237 238 0.604511 ACGGACGTTCATTTGGGGTC 60.605 55.000 0.00 0.00 0.00 4.46
238 239 1.632046 CGGACGTTCATTTGGGGTCG 61.632 60.000 0.00 0.00 0.00 4.79
239 240 1.500396 GACGTTCATTTGGGGTCGC 59.500 57.895 0.00 0.00 0.00 5.19
240 241 2.235536 GACGTTCATTTGGGGTCGCG 62.236 60.000 0.00 0.00 0.00 5.87
241 242 2.178273 GTTCATTTGGGGTCGCGC 59.822 61.111 0.00 0.00 0.00 6.86
242 243 3.427425 TTCATTTGGGGTCGCGCG 61.427 61.111 26.76 26.76 0.00 6.86
255 256 4.681978 GCGCGGTGGAGTTGACCT 62.682 66.667 8.83 0.00 0.00 3.85
256 257 2.432628 CGCGGTGGAGTTGACCTC 60.433 66.667 0.00 0.00 39.67 3.85
257 258 2.741092 GCGGTGGAGTTGACCTCA 59.259 61.111 0.00 0.00 42.40 3.86
258 259 1.668151 GCGGTGGAGTTGACCTCAC 60.668 63.158 0.00 0.00 42.40 3.51
259 260 1.004918 CGGTGGAGTTGACCTCACC 60.005 63.158 11.26 11.26 42.40 4.02
260 261 1.472662 CGGTGGAGTTGACCTCACCT 61.473 60.000 16.22 0.00 42.40 4.00
261 262 0.321996 GGTGGAGTTGACCTCACCTC 59.678 60.000 13.06 0.00 42.40 3.85
262 263 1.048601 GTGGAGTTGACCTCACCTCA 58.951 55.000 2.68 0.00 42.40 3.86
263 264 1.625818 GTGGAGTTGACCTCACCTCAT 59.374 52.381 2.68 0.00 42.40 2.90
264 265 1.902508 TGGAGTTGACCTCACCTCATC 59.097 52.381 2.68 0.00 42.40 2.92
265 266 1.134965 GGAGTTGACCTCACCTCATCG 60.135 57.143 2.68 0.00 42.40 3.84
266 267 0.247736 AGTTGACCTCACCTCATCGC 59.752 55.000 0.00 0.00 0.00 4.58
267 268 0.037326 GTTGACCTCACCTCATCGCA 60.037 55.000 0.00 0.00 0.00 5.10
268 269 0.247460 TTGACCTCACCTCATCGCAG 59.753 55.000 0.00 0.00 0.00 5.18
269 270 1.520342 GACCTCACCTCATCGCAGC 60.520 63.158 0.00 0.00 0.00 5.25
270 271 2.202987 CCTCACCTCATCGCAGCC 60.203 66.667 0.00 0.00 0.00 4.85
271 272 2.584418 CTCACCTCATCGCAGCCG 60.584 66.667 0.00 0.00 0.00 5.52
272 273 4.147449 TCACCTCATCGCAGCCGG 62.147 66.667 0.00 0.00 34.56 6.13
273 274 4.147449 CACCTCATCGCAGCCGGA 62.147 66.667 5.05 0.00 34.56 5.14
274 275 3.842923 ACCTCATCGCAGCCGGAG 61.843 66.667 5.05 0.00 34.56 4.63
288 289 4.284550 GGAGGGTGTTGCCAGGCA 62.285 66.667 11.22 11.22 39.65 4.75
289 290 2.203480 GAGGGTGTTGCCAGGCAA 60.203 61.111 23.88 23.88 46.80 4.52
324 325 3.343421 GGTGTGGTTCCGCGTGTC 61.343 66.667 4.92 0.00 0.00 3.67
325 326 2.279918 GTGTGGTTCCGCGTGTCT 60.280 61.111 4.92 0.00 0.00 3.41
326 327 2.279851 TGTGGTTCCGCGTGTCTG 60.280 61.111 4.92 0.00 0.00 3.51
327 328 2.028484 GTGGTTCCGCGTGTCTGA 59.972 61.111 4.92 0.00 0.00 3.27
328 329 1.593209 GTGGTTCCGCGTGTCTGAA 60.593 57.895 4.92 0.00 0.00 3.02
329 330 1.300620 TGGTTCCGCGTGTCTGAAG 60.301 57.895 4.92 0.00 0.00 3.02
330 331 2.027625 GGTTCCGCGTGTCTGAAGG 61.028 63.158 4.92 0.00 0.00 3.46
331 332 1.300697 GTTCCGCGTGTCTGAAGGT 60.301 57.895 4.92 0.00 0.00 3.50
342 343 1.002544 GTCTGAAGGTCTCTTGGTGGG 59.997 57.143 0.00 0.00 32.52 4.61
343 344 0.326264 CTGAAGGTCTCTTGGTGGGG 59.674 60.000 0.00 0.00 32.52 4.96
344 345 0.401395 TGAAGGTCTCTTGGTGGGGT 60.401 55.000 0.00 0.00 32.52 4.95
345 346 0.036875 GAAGGTCTCTTGGTGGGGTG 59.963 60.000 0.00 0.00 32.52 4.61
347 348 0.697854 AGGTCTCTTGGTGGGGTGTT 60.698 55.000 0.00 0.00 0.00 3.32
357 358 1.601166 GTGGGGTGTTAGTGGTGAAC 58.399 55.000 0.00 0.00 0.00 3.18
362 363 1.069668 GGTGTTAGTGGTGAACTCGGT 59.930 52.381 0.00 0.00 40.56 4.69
375 376 1.213013 CTCGGTGTCGCTTGCTAGT 59.787 57.895 0.00 0.00 36.13 2.57
388 390 2.680312 TGCTAGTGGAGAAGTGATGC 57.320 50.000 0.00 0.00 0.00 3.91
389 391 1.134995 TGCTAGTGGAGAAGTGATGCG 60.135 52.381 0.00 0.00 0.00 4.73
390 392 1.134965 GCTAGTGGAGAAGTGATGCGT 60.135 52.381 0.00 0.00 0.00 5.24
391 393 2.803451 CTAGTGGAGAAGTGATGCGTC 58.197 52.381 0.00 0.00 0.00 5.19
392 394 0.109086 AGTGGAGAAGTGATGCGTCG 60.109 55.000 0.58 0.00 0.00 5.12
393 395 0.388649 GTGGAGAAGTGATGCGTCGT 60.389 55.000 0.58 0.00 0.00 4.34
395 397 0.109272 GGAGAAGTGATGCGTCGTGA 60.109 55.000 0.58 0.00 0.00 4.35
396 398 1.668919 GGAGAAGTGATGCGTCGTGAA 60.669 52.381 0.58 0.00 0.00 3.18
397 399 1.387084 GAGAAGTGATGCGTCGTGAAC 59.613 52.381 0.58 0.00 0.00 3.18
409 418 2.726691 CGTGAACGACCGTGATGGC 61.727 63.158 0.00 0.00 43.94 4.40
438 447 0.249120 TCTTGTGGGTAGCCATGTCG 59.751 55.000 18.29 6.55 0.00 4.35
440 449 1.485294 TTGTGGGTAGCCATGTCGGT 61.485 55.000 18.29 0.00 36.97 4.69
441 450 1.298667 GTGGGTAGCCATGTCGGTT 59.701 57.895 18.29 0.00 36.97 4.44
474 484 9.553064 CCTATCTTATGGGCATATGTTCTAATC 57.447 37.037 4.29 0.00 0.00 1.75
480 490 6.767524 TGGGCATATGTTCTAATCGTTTTT 57.232 33.333 4.29 0.00 0.00 1.94
494 504 4.886247 TCGTTTTTGTCCGAGTTTTCAT 57.114 36.364 0.00 0.00 0.00 2.57
496 506 5.740406 TCGTTTTTGTCCGAGTTTTCATAC 58.260 37.500 0.00 0.00 0.00 2.39
499 509 6.469595 CGTTTTTGTCCGAGTTTTCATACAAA 59.530 34.615 0.00 0.00 36.54 2.83
502 512 9.453325 TTTTTGTCCGAGTTTTCATACAAATAC 57.547 29.630 0.00 0.00 37.40 1.89
506 516 7.658167 TGTCCGAGTTTTCATACAAATACTTGA 59.342 33.333 0.00 0.00 36.33 3.02
559 570 4.988598 CCCTGAGGCACGCAACGT 62.989 66.667 0.00 0.00 37.93 3.99
560 571 3.414700 CCTGAGGCACGCAACGTC 61.415 66.667 0.00 0.00 37.93 4.34
565 576 0.657368 GAGGCACGCAACGTCAAAAG 60.657 55.000 0.00 0.00 38.32 2.27
566 577 1.657181 GGCACGCAACGTCAAAAGG 60.657 57.895 0.00 0.00 38.32 3.11
716 758 8.776470 CAAGTTTTCATGTGCCTTGAAATAAAT 58.224 29.630 13.26 2.17 41.36 1.40
717 759 9.995003 AAGTTTTCATGTGCCTTGAAATAAATA 57.005 25.926 13.26 1.61 41.36 1.40
774 818 7.378181 GTGTTTTCATGTACCTTGAAATGGAT 58.622 34.615 17.05 0.00 41.36 3.41
780 824 8.187913 TCATGTACCTTGAAATGGATTTTTCA 57.812 30.769 0.00 0.00 42.33 2.69
802 846 7.994425 TCATTTTGAAGCTTGTTCTATGGTA 57.006 32.000 2.10 0.00 0.00 3.25
836 880 7.550196 GTGCCTTGAAATGGAATATTCACAATT 59.450 33.333 17.07 11.19 35.42 2.32
884 928 2.096496 CGGAGAATCATTGTGTTGGCTC 59.904 50.000 0.00 0.00 36.25 4.70
916 962 6.679327 AAACAAATCTAGCCGAATAGGTTC 57.321 37.500 0.00 0.00 43.70 3.62
1053 1104 1.313129 GCTCCCTCTTCCTCCCTCT 59.687 63.158 0.00 0.00 0.00 3.69
1226 1289 0.671251 GACGGTATGCAGGAGAGGAG 59.329 60.000 0.00 0.00 0.00 3.69
1271 1334 1.531149 CAACCTGTTCGACGAAATGCT 59.469 47.619 12.67 0.00 0.00 3.79
1314 1377 3.702048 GTACGTGGCCTGCCCAGA 61.702 66.667 3.32 0.00 46.54 3.86
1606 1669 2.623915 GGGCTGATGGATGATGCGC 61.624 63.158 0.00 0.00 0.00 6.09
1653 1716 0.987294 CCAACATGGTCTCCTGGAGT 59.013 55.000 22.50 0.91 31.35 3.85
1657 1720 0.251354 CATGGTCTCCTGGAGTGTGG 59.749 60.000 22.50 7.09 0.00 4.17
1800 1863 1.711060 CGTTGTTGTGCCTGGTTCGT 61.711 55.000 0.00 0.00 0.00 3.85
1857 1920 2.131776 TTGAAAGGAACACCACCGTT 57.868 45.000 0.00 0.00 32.41 4.44
1947 2010 4.080863 ACAATGGTAGACAGGGATCAAGTC 60.081 45.833 0.00 0.00 0.00 3.01
1987 2050 3.585862 TCAAGCTATGTTCGTCTTGGTC 58.414 45.455 0.00 0.00 37.21 4.02
2038 2101 1.200716 AGATGCAGCAATGTGGTTTCG 59.799 47.619 4.07 0.00 0.00 3.46
2079 2142 2.358003 AGTGGAGTCGCAGCTTGC 60.358 61.111 0.00 0.00 40.69 4.01
2184 2247 2.160219 CAGCGCACTTGTTGACATGTAT 59.840 45.455 11.47 0.00 33.61 2.29
2220 2283 1.812922 GGAGCATGCTCGACTGGTG 60.813 63.158 34.96 0.00 43.59 4.17
2318 2381 2.031120 CTTGGCACTCAAGGTTTTCCA 58.969 47.619 0.00 0.00 46.81 3.53
2472 2535 8.352201 CAGATGAATGTAGTTTTGGAAACTGAA 58.648 33.333 14.50 4.89 0.00 3.02
2529 2592 0.035739 TTGCCCGGTTACTGTTCCTC 59.964 55.000 0.00 0.00 0.00 3.71
2622 2685 3.061161 GTGCGTCGATAAACATTTACCGT 59.939 43.478 0.00 0.00 31.68 4.83
2868 2931 4.463539 AGGAACTTTTATGTGCATGATGCA 59.536 37.500 17.32 17.32 45.96 3.96
2910 2973 7.234577 GGAGATGGGTACTTTATCTGAAGAGAT 59.765 40.741 10.37 0.00 42.03 2.75
2913 2976 7.113658 TGGGTACTTTATCTGAAGAGATGAC 57.886 40.000 0.00 0.00 39.44 3.06
2941 3004 1.694150 CTGGTGTCCAGTGGAGAAGAA 59.306 52.381 13.61 0.00 45.82 2.52
2942 3005 1.694150 TGGTGTCCAGTGGAGAAGAAG 59.306 52.381 13.61 0.00 29.39 2.85
2943 3006 1.971357 GGTGTCCAGTGGAGAAGAAGA 59.029 52.381 13.61 0.00 29.39 2.87
2946 3009 4.142049 GGTGTCCAGTGGAGAAGAAGATAG 60.142 50.000 13.61 0.00 29.39 2.08
2960 3023 2.810439 AGATAGATGCTTCGGTGCTC 57.190 50.000 2.64 0.00 0.00 4.26
2962 3025 2.035704 AGATAGATGCTTCGGTGCTCAG 59.964 50.000 2.64 0.00 0.00 3.35
2963 3026 1.186200 TAGATGCTTCGGTGCTCAGT 58.814 50.000 2.64 0.00 0.00 3.41
2964 3027 0.108424 AGATGCTTCGGTGCTCAGTC 60.108 55.000 2.64 0.00 0.00 3.51
2966 3029 0.390866 ATGCTTCGGTGCTCAGTCAG 60.391 55.000 2.64 0.00 0.00 3.51
3026 3089 4.329545 GCACAAGGCGTCCTCCCA 62.330 66.667 0.00 0.00 30.89 4.37
3039 3102 4.770795 CGTCCTCCCAATGTTCTTCTAAT 58.229 43.478 0.00 0.00 0.00 1.73
3074 3137 2.039084 AGAGCTTCGACCCATGAAAACT 59.961 45.455 0.00 0.00 0.00 2.66
3102 3165 1.488393 GAGAAGGATAGTTGGGCAGCT 59.512 52.381 0.00 0.00 0.00 4.24
3103 3166 1.211457 AGAAGGATAGTTGGGCAGCTG 59.789 52.381 10.11 10.11 0.00 4.24
3240 3313 5.821516 TTTGTAGTGTTGTTTACCACTGG 57.178 39.130 2.72 0.00 0.00 4.00
3261 3334 2.222976 GCTTTCATCATGTCAGCTCACG 60.223 50.000 4.15 0.00 0.00 4.35
3304 3388 4.968259 TCATTGTACCTTGCACTACTGTT 58.032 39.130 0.00 0.00 0.00 3.16
3307 3391 5.493133 TTGTACCTTGCACTACTGTTTTG 57.507 39.130 0.00 0.00 0.00 2.44
3308 3392 4.519213 TGTACCTTGCACTACTGTTTTGT 58.481 39.130 0.00 0.00 0.00 2.83
3309 3393 5.672503 TGTACCTTGCACTACTGTTTTGTA 58.327 37.500 0.00 0.00 0.00 2.41
3310 3394 5.524646 TGTACCTTGCACTACTGTTTTGTAC 59.475 40.000 0.00 0.00 0.00 2.90
3311 3395 4.777463 ACCTTGCACTACTGTTTTGTACT 58.223 39.130 0.00 0.00 0.00 2.73
3312 3396 4.814771 ACCTTGCACTACTGTTTTGTACTC 59.185 41.667 0.00 0.00 0.00 2.59
3313 3397 4.213482 CCTTGCACTACTGTTTTGTACTCC 59.787 45.833 0.00 0.00 0.00 3.85
3314 3398 3.735591 TGCACTACTGTTTTGTACTCCC 58.264 45.455 0.00 0.00 0.00 4.30
3315 3399 3.389983 TGCACTACTGTTTTGTACTCCCT 59.610 43.478 0.00 0.00 0.00 4.20
3316 3400 3.995048 GCACTACTGTTTTGTACTCCCTC 59.005 47.826 0.00 0.00 0.00 4.30
3317 3401 4.566987 CACTACTGTTTTGTACTCCCTCC 58.433 47.826 0.00 0.00 0.00 4.30
3318 3402 2.833631 ACTGTTTTGTACTCCCTCCG 57.166 50.000 0.00 0.00 0.00 4.63
3319 3403 2.044758 ACTGTTTTGTACTCCCTCCGT 58.955 47.619 0.00 0.00 0.00 4.69
3320 3404 2.224209 ACTGTTTTGTACTCCCTCCGTG 60.224 50.000 0.00 0.00 0.00 4.94
3321 3405 2.036733 CTGTTTTGTACTCCCTCCGTGA 59.963 50.000 0.00 0.00 0.00 4.35
3322 3406 2.435069 TGTTTTGTACTCCCTCCGTGAA 59.565 45.455 0.00 0.00 0.00 3.18
3323 3407 3.064931 GTTTTGTACTCCCTCCGTGAAG 58.935 50.000 0.00 0.00 0.00 3.02
3324 3408 2.005370 TTGTACTCCCTCCGTGAAGT 57.995 50.000 0.00 0.00 0.00 3.01
3325 3409 2.005370 TGTACTCCCTCCGTGAAGTT 57.995 50.000 0.00 0.00 0.00 2.66
3326 3410 3.159213 TGTACTCCCTCCGTGAAGTTA 57.841 47.619 0.00 0.00 0.00 2.24
3327 3411 3.087031 TGTACTCCCTCCGTGAAGTTAG 58.913 50.000 0.00 0.00 0.00 2.34
3328 3412 2.305858 ACTCCCTCCGTGAAGTTAGT 57.694 50.000 0.00 0.00 0.00 2.24
3329 3413 3.446442 ACTCCCTCCGTGAAGTTAGTA 57.554 47.619 0.00 0.00 0.00 1.82
3330 3414 3.087781 ACTCCCTCCGTGAAGTTAGTAC 58.912 50.000 0.00 0.00 0.00 2.73
3331 3415 3.087031 CTCCCTCCGTGAAGTTAGTACA 58.913 50.000 0.00 0.00 0.00 2.90
3332 3416 3.499338 TCCCTCCGTGAAGTTAGTACAA 58.501 45.455 0.00 0.00 0.00 2.41
3333 3417 3.896888 TCCCTCCGTGAAGTTAGTACAAA 59.103 43.478 0.00 0.00 0.00 2.83
3334 3418 4.021719 TCCCTCCGTGAAGTTAGTACAAAG 60.022 45.833 0.00 0.00 0.00 2.77
3335 3419 4.262335 CCCTCCGTGAAGTTAGTACAAAGT 60.262 45.833 0.00 0.00 0.00 2.66
3336 3420 5.295152 CCTCCGTGAAGTTAGTACAAAGTT 58.705 41.667 0.00 0.00 0.00 2.66
3337 3421 5.176958 CCTCCGTGAAGTTAGTACAAAGTTG 59.823 44.000 0.00 0.00 0.00 3.16
3338 3422 5.904941 TCCGTGAAGTTAGTACAAAGTTGA 58.095 37.500 0.00 0.00 0.00 3.18
3339 3423 5.981315 TCCGTGAAGTTAGTACAAAGTTGAG 59.019 40.000 0.00 0.00 0.00 3.02
3340 3424 5.981315 CCGTGAAGTTAGTACAAAGTTGAGA 59.019 40.000 0.00 0.00 0.00 3.27
3341 3425 6.074463 CCGTGAAGTTAGTACAAAGTTGAGAC 60.074 42.308 0.00 0.00 0.00 3.36
3342 3426 6.474427 CGTGAAGTTAGTACAAAGTTGAGACA 59.526 38.462 0.00 0.00 0.00 3.41
3343 3427 7.514747 CGTGAAGTTAGTACAAAGTTGAGACAC 60.515 40.741 0.00 0.00 0.00 3.67
3344 3428 7.491696 GTGAAGTTAGTACAAAGTTGAGACACT 59.508 37.037 0.00 0.00 0.00 3.55
3345 3429 8.038944 TGAAGTTAGTACAAAGTTGAGACACTT 58.961 33.333 0.00 3.16 38.74 3.16
3346 3430 9.525409 GAAGTTAGTACAAAGTTGAGACACTTA 57.475 33.333 0.00 0.00 35.87 2.24
3352 3436 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
3353 3437 7.639113 ACAAAGTTGAGACACTTATTTTGGA 57.361 32.000 0.00 0.00 35.87 3.53
3354 3438 7.480810 ACAAAGTTGAGACACTTATTTTGGAC 58.519 34.615 0.00 0.00 35.87 4.02
3355 3439 5.924475 AGTTGAGACACTTATTTTGGACG 57.076 39.130 0.00 0.00 0.00 4.79
3356 3440 4.755123 AGTTGAGACACTTATTTTGGACGG 59.245 41.667 0.00 0.00 0.00 4.79
3357 3441 4.610605 TGAGACACTTATTTTGGACGGA 57.389 40.909 0.00 0.00 0.00 4.69
3358 3442 4.566004 TGAGACACTTATTTTGGACGGAG 58.434 43.478 0.00 0.00 0.00 4.63
3359 3443 3.933332 GAGACACTTATTTTGGACGGAGG 59.067 47.826 0.00 0.00 0.00 4.30
3360 3444 3.007635 GACACTTATTTTGGACGGAGGG 58.992 50.000 0.00 0.00 0.00 4.30
3361 3445 2.640826 ACACTTATTTTGGACGGAGGGA 59.359 45.455 0.00 0.00 0.00 4.20
3395 3479 0.921896 CAATGGGGAGTGAGGGATGT 59.078 55.000 0.00 0.00 0.00 3.06
3412 3496 4.005650 GGATGTTCAGCTCACAATTCTCA 58.994 43.478 0.00 0.00 0.00 3.27
3471 3555 1.597663 CGTAGGTGAATTTCCGATGGC 59.402 52.381 0.00 0.00 0.00 4.40
3472 3556 2.639065 GTAGGTGAATTTCCGATGGCA 58.361 47.619 0.00 0.00 0.00 4.92
3473 3557 2.214376 AGGTGAATTTCCGATGGCAA 57.786 45.000 0.00 0.00 0.00 4.52
3474 3558 2.738743 AGGTGAATTTCCGATGGCAAT 58.261 42.857 0.00 0.00 0.00 3.56
3475 3559 2.689983 AGGTGAATTTCCGATGGCAATC 59.310 45.455 0.00 0.00 0.00 2.67
3476 3560 2.689983 GGTGAATTTCCGATGGCAATCT 59.310 45.455 0.00 0.00 0.00 2.40
3477 3561 3.131046 GGTGAATTTCCGATGGCAATCTT 59.869 43.478 0.00 0.00 0.00 2.40
3478 3562 4.381932 GGTGAATTTCCGATGGCAATCTTT 60.382 41.667 0.00 0.00 0.00 2.52
3479 3563 5.170748 GTGAATTTCCGATGGCAATCTTTT 58.829 37.500 0.00 0.00 0.00 2.27
3480 3564 5.639082 GTGAATTTCCGATGGCAATCTTTTT 59.361 36.000 0.00 0.00 0.00 1.94
3503 3587 6.445357 TTTTTAAAGGACCGATAGCAATCC 57.555 37.500 0.00 0.00 0.00 3.01
3594 3679 8.352201 TGAACAAGTAATTTGATCTTGGTTCAG 58.648 33.333 0.00 0.00 38.90 3.02
3598 3683 7.636150 AGTAATTTGATCTTGGTTCAGATGG 57.364 36.000 0.00 0.00 33.36 3.51
3599 3684 7.405292 AGTAATTTGATCTTGGTTCAGATGGA 58.595 34.615 0.00 0.00 33.36 3.41
3600 3685 7.890127 AGTAATTTGATCTTGGTTCAGATGGAA 59.110 33.333 0.00 0.00 33.36 3.53
3601 3686 7.543359 AATTTGATCTTGGTTCAGATGGAAA 57.457 32.000 0.00 0.00 37.23 3.13
3602 3687 6.579666 TTTGATCTTGGTTCAGATGGAAAG 57.420 37.500 0.00 0.00 37.23 2.62
3603 3688 4.012374 TGATCTTGGTTCAGATGGAAAGC 58.988 43.478 0.00 0.00 37.23 3.51
3604 3689 3.795688 TCTTGGTTCAGATGGAAAGCT 57.204 42.857 0.00 0.00 37.23 3.74
3605 3690 3.415212 TCTTGGTTCAGATGGAAAGCTG 58.585 45.455 0.00 0.00 37.23 4.24
3606 3691 3.072915 TCTTGGTTCAGATGGAAAGCTGA 59.927 43.478 0.00 0.00 39.24 4.26
3607 3692 3.726557 TGGTTCAGATGGAAAGCTGAT 57.273 42.857 0.00 0.00 40.51 2.90
3638 3723 3.689872 TGGCAGAACCTAGGAGTATCT 57.310 47.619 17.98 10.28 40.22 1.98
3641 3726 3.634568 CAGAACCTAGGAGTATCTGCG 57.365 52.381 17.98 0.00 32.05 5.18
3712 3797 7.448777 TGTAGTAAACAGAGTCATCTTCAGACT 59.551 37.037 0.00 0.00 40.12 3.24
3761 3846 2.108168 ACCCAGCTGCTTCTACGATTA 58.892 47.619 8.66 0.00 0.00 1.75
3794 3881 8.150945 TCACTCCTATTCTTTACATCCATAAGC 58.849 37.037 0.00 0.00 0.00 3.09
3795 3882 7.933577 CACTCCTATTCTTTACATCCATAAGCA 59.066 37.037 0.00 0.00 0.00 3.91
3796 3883 8.494433 ACTCCTATTCTTTACATCCATAAGCAA 58.506 33.333 0.00 0.00 0.00 3.91
3797 3884 9.512588 CTCCTATTCTTTACATCCATAAGCAAT 57.487 33.333 0.00 0.00 0.00 3.56
3849 3950 7.392393 AGTCCATAACCAAACGTTAAGCTATTT 59.608 33.333 0.00 0.00 40.32 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.926860 TCACATTTTGACTAGTGATGCG 57.073 40.909 0.00 0.00 36.20 4.73
4 5 9.671279 AATACATCATCACATTTTGACTAGTGA 57.329 29.630 0.00 0.00 44.16 3.41
5 6 9.712359 CAATACATCATCACATTTTGACTAGTG 57.288 33.333 0.00 0.00 36.92 2.74
6 7 9.453572 ACAATACATCATCACATTTTGACTAGT 57.546 29.630 0.00 0.00 36.92 2.57
7 8 9.926751 GACAATACATCATCACATTTTGACTAG 57.073 33.333 0.00 0.00 36.92 2.57
8 9 9.447157 TGACAATACATCATCACATTTTGACTA 57.553 29.630 0.00 0.00 36.92 2.59
9 10 8.339344 TGACAATACATCATCACATTTTGACT 57.661 30.769 0.00 0.00 36.92 3.41
10 11 9.016623 CATGACAATACATCATCACATTTTGAC 57.983 33.333 0.00 0.00 36.92 3.18
11 12 8.741841 ACATGACAATACATCATCACATTTTGA 58.258 29.630 0.00 0.00 34.49 2.69
12 13 8.920509 ACATGACAATACATCATCACATTTTG 57.079 30.769 0.00 0.00 34.49 2.44
15 16 9.563748 TGATACATGACAATACATCATCACATT 57.436 29.630 0.00 0.00 34.49 2.71
16 17 9.563748 TTGATACATGACAATACATCATCACAT 57.436 29.630 0.00 0.00 34.49 3.21
17 18 8.961294 TTGATACATGACAATACATCATCACA 57.039 30.769 0.00 0.00 34.49 3.58
57 58 8.840833 TTTCTTTGCAAGTCCTTAAACTTTTT 57.159 26.923 0.00 0.00 37.38 1.94
58 59 8.840833 TTTTCTTTGCAAGTCCTTAAACTTTT 57.159 26.923 0.00 0.00 37.38 2.27
59 60 8.094548 ACTTTTCTTTGCAAGTCCTTAAACTTT 58.905 29.630 0.00 0.00 37.38 2.66
60 61 7.545615 CACTTTTCTTTGCAAGTCCTTAAACTT 59.454 33.333 0.00 0.00 40.08 2.66
61 62 7.035612 CACTTTTCTTTGCAAGTCCTTAAACT 58.964 34.615 0.00 0.00 30.48 2.66
62 63 6.237835 GCACTTTTCTTTGCAAGTCCTTAAAC 60.238 38.462 0.00 0.00 38.68 2.01
63 64 5.810074 GCACTTTTCTTTGCAAGTCCTTAAA 59.190 36.000 0.00 0.00 38.68 1.52
64 65 5.105554 TGCACTTTTCTTTGCAAGTCCTTAA 60.106 36.000 0.00 0.00 45.65 1.85
65 66 4.400884 TGCACTTTTCTTTGCAAGTCCTTA 59.599 37.500 0.00 0.00 45.65 2.69
66 67 3.195396 TGCACTTTTCTTTGCAAGTCCTT 59.805 39.130 0.00 0.00 45.65 3.36
67 68 2.760092 TGCACTTTTCTTTGCAAGTCCT 59.240 40.909 0.00 0.00 45.65 3.85
68 69 3.163630 TGCACTTTTCTTTGCAAGTCC 57.836 42.857 0.00 0.00 45.65 3.85
73 74 0.865218 CGCGTGCACTTTTCTTTGCA 60.865 50.000 16.19 0.00 46.43 4.08
74 75 1.539776 CCGCGTGCACTTTTCTTTGC 61.540 55.000 16.19 7.15 39.33 3.68
75 76 0.028770 TCCGCGTGCACTTTTCTTTG 59.971 50.000 16.19 0.00 0.00 2.77
76 77 0.028902 GTCCGCGTGCACTTTTCTTT 59.971 50.000 16.19 0.00 0.00 2.52
77 78 1.092921 TGTCCGCGTGCACTTTTCTT 61.093 50.000 16.19 0.00 0.00 2.52
78 79 1.092921 TTGTCCGCGTGCACTTTTCT 61.093 50.000 16.19 0.00 0.00 2.52
79 80 0.657368 CTTGTCCGCGTGCACTTTTC 60.657 55.000 16.19 2.37 0.00 2.29
80 81 1.092921 TCTTGTCCGCGTGCACTTTT 61.093 50.000 16.19 0.00 0.00 2.27
81 82 0.884704 ATCTTGTCCGCGTGCACTTT 60.885 50.000 16.19 0.00 0.00 2.66
82 83 1.301716 ATCTTGTCCGCGTGCACTT 60.302 52.632 16.19 0.00 0.00 3.16
83 84 2.029288 CATCTTGTCCGCGTGCACT 61.029 57.895 16.19 0.00 0.00 4.40
84 85 2.476051 CATCTTGTCCGCGTGCAC 59.524 61.111 6.82 6.82 0.00 4.57
85 86 3.422303 GCATCTTGTCCGCGTGCA 61.422 61.111 4.92 0.00 35.93 4.57
86 87 4.505217 CGCATCTTGTCCGCGTGC 62.505 66.667 4.92 5.33 43.86 5.34
93 94 3.757248 ATCCCGGCCGCATCTTGTC 62.757 63.158 22.85 0.00 0.00 3.18
94 95 3.797353 ATCCCGGCCGCATCTTGT 61.797 61.111 22.85 0.00 0.00 3.16
95 96 3.282157 CATCCCGGCCGCATCTTG 61.282 66.667 22.85 8.52 0.00 3.02
96 97 3.797353 ACATCCCGGCCGCATCTT 61.797 61.111 22.85 0.00 0.00 2.40
97 98 4.552365 CACATCCCGGCCGCATCT 62.552 66.667 22.85 0.00 0.00 2.90
98 99 4.856801 ACACATCCCGGCCGCATC 62.857 66.667 22.85 0.00 0.00 3.91
99 100 4.856801 GACACATCCCGGCCGCAT 62.857 66.667 22.85 11.23 0.00 4.73
151 152 3.508840 CAGTTTCCGGGATGCGCC 61.509 66.667 4.18 0.00 0.00 6.53
152 153 4.179579 GCAGTTTCCGGGATGCGC 62.180 66.667 0.00 0.00 0.00 6.09
153 154 3.508840 GGCAGTTTCCGGGATGCG 61.509 66.667 13.38 0.00 39.58 4.73
154 155 3.140814 GGGCAGTTTCCGGGATGC 61.141 66.667 11.76 11.76 37.95 3.91
155 156 2.824041 CGGGCAGTTTCCGGGATG 60.824 66.667 0.00 0.00 43.45 3.51
160 161 3.047877 GTGTCCGGGCAGTTTCCG 61.048 66.667 10.28 0.00 46.43 4.30
161 162 3.047877 CGTGTCCGGGCAGTTTCC 61.048 66.667 10.28 0.00 0.00 3.13
162 163 2.029964 TCGTGTCCGGGCAGTTTC 59.970 61.111 10.28 0.00 33.95 2.78
163 164 2.280592 GTCGTGTCCGGGCAGTTT 60.281 61.111 10.28 0.00 33.95 2.66
164 165 4.309950 GGTCGTGTCCGGGCAGTT 62.310 66.667 10.28 0.00 33.95 3.16
169 170 4.157120 GATGGGGTCGTGTCCGGG 62.157 72.222 0.00 0.00 33.95 5.73
170 171 4.157120 GGATGGGGTCGTGTCCGG 62.157 72.222 0.00 0.00 33.95 5.14
171 172 4.157120 GGGATGGGGTCGTGTCCG 62.157 72.222 0.00 0.00 0.00 4.79
172 173 3.793888 GGGGATGGGGTCGTGTCC 61.794 72.222 0.00 0.00 0.00 4.02
173 174 2.884179 TAGGGGGATGGGGTCGTGTC 62.884 65.000 0.00 0.00 0.00 3.67
174 175 2.950868 TAGGGGGATGGGGTCGTGT 61.951 63.158 0.00 0.00 0.00 4.49
175 176 2.041301 TAGGGGGATGGGGTCGTG 60.041 66.667 0.00 0.00 0.00 4.35
176 177 2.041197 GTAGGGGGATGGGGTCGT 60.041 66.667 0.00 0.00 0.00 4.34
177 178 2.847715 GGTAGGGGGATGGGGTCG 60.848 72.222 0.00 0.00 0.00 4.79
178 179 2.449911 GGGTAGGGGGATGGGGTC 60.450 72.222 0.00 0.00 0.00 4.46
179 180 2.455612 TTTGGGTAGGGGGATGGGGT 62.456 60.000 0.00 0.00 0.00 4.95
180 181 1.624310 TTTGGGTAGGGGGATGGGG 60.624 63.158 0.00 0.00 0.00 4.96
181 182 1.218439 TGTTTGGGTAGGGGGATGGG 61.218 60.000 0.00 0.00 0.00 4.00
182 183 0.258774 CTGTTTGGGTAGGGGGATGG 59.741 60.000 0.00 0.00 0.00 3.51
183 184 1.064685 GTCTGTTTGGGTAGGGGGATG 60.065 57.143 0.00 0.00 0.00 3.51
184 185 1.296002 GTCTGTTTGGGTAGGGGGAT 58.704 55.000 0.00 0.00 0.00 3.85
185 186 0.104356 TGTCTGTTTGGGTAGGGGGA 60.104 55.000 0.00 0.00 0.00 4.81
186 187 0.328258 CTGTCTGTTTGGGTAGGGGG 59.672 60.000 0.00 0.00 0.00 5.40
187 188 1.358152 TCTGTCTGTTTGGGTAGGGG 58.642 55.000 0.00 0.00 0.00 4.79
188 189 3.264450 AGATTCTGTCTGTTTGGGTAGGG 59.736 47.826 0.00 0.00 35.31 3.53
189 190 4.559862 AGATTCTGTCTGTTTGGGTAGG 57.440 45.455 0.00 0.00 35.31 3.18
200 201 3.071023 TCCGTTTTGTCCAGATTCTGTCT 59.929 43.478 12.54 0.00 37.80 3.41
201 202 3.186613 GTCCGTTTTGTCCAGATTCTGTC 59.813 47.826 12.54 6.13 0.00 3.51
202 203 3.139077 GTCCGTTTTGTCCAGATTCTGT 58.861 45.455 12.54 0.00 0.00 3.41
203 204 2.157668 CGTCCGTTTTGTCCAGATTCTG 59.842 50.000 6.70 6.70 0.00 3.02
204 205 2.224209 ACGTCCGTTTTGTCCAGATTCT 60.224 45.455 0.00 0.00 0.00 2.40
205 206 2.140717 ACGTCCGTTTTGTCCAGATTC 58.859 47.619 0.00 0.00 0.00 2.52
206 207 2.249844 ACGTCCGTTTTGTCCAGATT 57.750 45.000 0.00 0.00 0.00 2.40
207 208 2.140717 GAACGTCCGTTTTGTCCAGAT 58.859 47.619 6.52 0.00 38.60 2.90
208 209 1.134759 TGAACGTCCGTTTTGTCCAGA 60.135 47.619 6.52 0.00 38.60 3.86
209 210 1.292061 TGAACGTCCGTTTTGTCCAG 58.708 50.000 6.52 0.00 38.60 3.86
210 211 1.956297 ATGAACGTCCGTTTTGTCCA 58.044 45.000 6.52 0.28 38.60 4.02
211 212 3.040099 CAAATGAACGTCCGTTTTGTCC 58.960 45.455 6.52 0.00 38.60 4.02
212 213 3.040099 CCAAATGAACGTCCGTTTTGTC 58.960 45.455 6.52 0.00 38.60 3.18
213 214 2.223618 CCCAAATGAACGTCCGTTTTGT 60.224 45.455 6.52 0.00 38.60 2.83
214 215 2.389998 CCCAAATGAACGTCCGTTTTG 58.610 47.619 6.52 7.38 38.60 2.44
215 216 1.338655 CCCCAAATGAACGTCCGTTTT 59.661 47.619 6.52 0.00 38.60 2.43
216 217 0.955905 CCCCAAATGAACGTCCGTTT 59.044 50.000 6.52 0.00 38.60 3.60
217 218 0.179012 ACCCCAAATGAACGTCCGTT 60.179 50.000 4.52 4.52 41.54 4.44
218 219 0.604511 GACCCCAAATGAACGTCCGT 60.605 55.000 0.00 0.00 0.00 4.69
219 220 1.632046 CGACCCCAAATGAACGTCCG 61.632 60.000 0.00 0.00 0.00 4.79
220 221 1.918868 GCGACCCCAAATGAACGTCC 61.919 60.000 0.00 0.00 0.00 4.79
221 222 1.500396 GCGACCCCAAATGAACGTC 59.500 57.895 0.00 0.00 0.00 4.34
222 223 2.322081 CGCGACCCCAAATGAACGT 61.322 57.895 0.00 0.00 0.00 3.99
223 224 2.478746 CGCGACCCCAAATGAACG 59.521 61.111 0.00 0.00 0.00 3.95
224 225 2.178273 GCGCGACCCCAAATGAAC 59.822 61.111 12.10 0.00 0.00 3.18
225 226 3.427425 CGCGCGACCCCAAATGAA 61.427 61.111 28.94 0.00 0.00 2.57
238 239 4.681978 AGGTCAACTCCACCGCGC 62.682 66.667 0.00 0.00 39.13 6.86
239 240 2.432628 GAGGTCAACTCCACCGCG 60.433 66.667 0.00 0.00 40.49 6.46
240 241 1.668151 GTGAGGTCAACTCCACCGC 60.668 63.158 0.00 0.00 46.01 5.68
241 242 1.004918 GGTGAGGTCAACTCCACCG 60.005 63.158 0.00 0.00 46.01 4.94
242 243 2.453242 AGGTGAGGTCAACTCCACC 58.547 57.895 13.06 13.06 40.49 4.61
248 249 0.037326 TGCGATGAGGTGAGGTCAAC 60.037 55.000 0.00 0.00 0.00 3.18
249 250 0.247460 CTGCGATGAGGTGAGGTCAA 59.753 55.000 0.00 0.00 0.00 3.18
250 251 1.893062 CTGCGATGAGGTGAGGTCA 59.107 57.895 0.00 0.00 0.00 4.02
251 252 1.520342 GCTGCGATGAGGTGAGGTC 60.520 63.158 0.00 0.00 0.00 3.85
252 253 2.581354 GCTGCGATGAGGTGAGGT 59.419 61.111 0.00 0.00 0.00 3.85
253 254 2.202987 GGCTGCGATGAGGTGAGG 60.203 66.667 0.00 0.00 0.00 3.86
254 255 2.584418 CGGCTGCGATGAGGTGAG 60.584 66.667 0.00 0.00 0.00 3.51
255 256 4.147449 CCGGCTGCGATGAGGTGA 62.147 66.667 0.00 0.00 0.00 4.02
256 257 4.147449 TCCGGCTGCGATGAGGTG 62.147 66.667 0.00 0.00 0.00 4.00
257 258 3.842923 CTCCGGCTGCGATGAGGT 61.843 66.667 0.00 0.00 0.00 3.85
258 259 4.598894 CCTCCGGCTGCGATGAGG 62.599 72.222 13.82 13.82 38.56 3.86
259 260 4.598894 CCCTCCGGCTGCGATGAG 62.599 72.222 0.00 0.00 0.00 2.90
269 270 4.722700 CCTGGCAACACCCTCCGG 62.723 72.222 0.00 0.00 46.17 5.14
271 272 3.808218 TTGCCTGGCAACACCCTCC 62.808 63.158 29.24 0.00 43.99 4.30
272 273 2.203480 TTGCCTGGCAACACCCTC 60.203 61.111 29.24 0.00 43.99 4.30
307 308 3.343421 GACACGCGGAACCACACC 61.343 66.667 12.47 0.00 0.00 4.16
308 309 2.279918 AGACACGCGGAACCACAC 60.280 61.111 12.47 0.00 0.00 3.82
309 310 2.279851 CAGACACGCGGAACCACA 60.280 61.111 12.47 0.00 0.00 4.17
310 311 1.557443 CTTCAGACACGCGGAACCAC 61.557 60.000 12.47 0.00 0.00 4.16
311 312 1.300620 CTTCAGACACGCGGAACCA 60.301 57.895 12.47 0.00 0.00 3.67
312 313 2.027625 CCTTCAGACACGCGGAACC 61.028 63.158 12.47 0.00 0.00 3.62
313 314 1.282930 GACCTTCAGACACGCGGAAC 61.283 60.000 12.47 0.09 0.00 3.62
314 315 1.006571 GACCTTCAGACACGCGGAA 60.007 57.895 12.47 2.43 0.00 4.30
315 316 1.863662 GAGACCTTCAGACACGCGGA 61.864 60.000 12.47 0.00 0.00 5.54
316 317 1.444553 GAGACCTTCAGACACGCGG 60.445 63.158 12.47 1.27 0.00 6.46
317 318 0.039074 AAGAGACCTTCAGACACGCG 60.039 55.000 3.53 3.53 0.00 6.01
318 319 1.423395 CAAGAGACCTTCAGACACGC 58.577 55.000 0.00 0.00 0.00 5.34
319 320 1.341531 ACCAAGAGACCTTCAGACACG 59.658 52.381 0.00 0.00 0.00 4.49
320 321 2.548920 CCACCAAGAGACCTTCAGACAC 60.549 54.545 0.00 0.00 0.00 3.67
321 322 1.694150 CCACCAAGAGACCTTCAGACA 59.306 52.381 0.00 0.00 0.00 3.41
322 323 1.002544 CCCACCAAGAGACCTTCAGAC 59.997 57.143 0.00 0.00 0.00 3.51
323 324 1.352083 CCCACCAAGAGACCTTCAGA 58.648 55.000 0.00 0.00 0.00 3.27
324 325 0.326264 CCCCACCAAGAGACCTTCAG 59.674 60.000 0.00 0.00 0.00 3.02
325 326 0.401395 ACCCCACCAAGAGACCTTCA 60.401 55.000 0.00 0.00 0.00 3.02
326 327 0.036875 CACCCCACCAAGAGACCTTC 59.963 60.000 0.00 0.00 0.00 3.46
327 328 0.697854 ACACCCCACCAAGAGACCTT 60.698 55.000 0.00 0.00 0.00 3.50
328 329 0.697854 AACACCCCACCAAGAGACCT 60.698 55.000 0.00 0.00 0.00 3.85
329 330 1.003233 CTAACACCCCACCAAGAGACC 59.997 57.143 0.00 0.00 0.00 3.85
330 331 1.697982 ACTAACACCCCACCAAGAGAC 59.302 52.381 0.00 0.00 0.00 3.36
331 332 1.697432 CACTAACACCCCACCAAGAGA 59.303 52.381 0.00 0.00 0.00 3.10
342 343 1.069668 ACCGAGTTCACCACTAACACC 59.930 52.381 0.00 0.00 35.01 4.16
343 344 2.132762 CACCGAGTTCACCACTAACAC 58.867 52.381 0.00 0.00 35.01 3.32
344 345 1.758280 ACACCGAGTTCACCACTAACA 59.242 47.619 0.00 0.00 35.01 2.41
345 346 2.401351 GACACCGAGTTCACCACTAAC 58.599 52.381 0.00 0.00 35.01 2.34
347 348 0.594602 CGACACCGAGTTCACCACTA 59.405 55.000 0.00 0.00 35.01 2.74
357 358 1.073216 CACTAGCAAGCGACACCGAG 61.073 60.000 0.00 0.00 38.22 4.63
362 363 0.966179 TTCTCCACTAGCAAGCGACA 59.034 50.000 0.00 0.00 0.00 4.35
375 376 0.388520 CACGACGCATCACTTCTCCA 60.389 55.000 0.00 0.00 0.00 3.86
391 393 2.726691 GCCATCACGGTCGTTCACG 61.727 63.158 0.00 0.00 36.97 4.35
392 394 2.726691 CGCCATCACGGTCGTTCAC 61.727 63.158 0.00 0.00 36.97 3.18
393 395 2.431771 CGCCATCACGGTCGTTCA 60.432 61.111 0.00 0.00 36.97 3.18
395 397 2.736995 CACGCCATCACGGTCGTT 60.737 61.111 0.00 0.00 42.93 3.85
396 398 3.986006 ACACGCCATCACGGTCGT 61.986 61.111 0.00 0.00 44.76 4.34
397 399 3.478394 CACACGCCATCACGGTCG 61.478 66.667 0.00 0.00 39.35 4.79
398 400 1.959226 AACACACGCCATCACGGTC 60.959 57.895 0.00 0.00 37.37 4.79
403 412 0.179032 AAGACCAACACACGCCATCA 60.179 50.000 0.00 0.00 0.00 3.07
409 418 0.746563 ACCCACAAGACCAACACACG 60.747 55.000 0.00 0.00 0.00 4.49
438 447 3.496870 CCCATAAGATAGGCACTCCAACC 60.497 52.174 0.00 0.00 41.75 3.77
440 449 2.106511 GCCCATAAGATAGGCACTCCAA 59.893 50.000 0.00 0.00 46.34 3.53
441 450 1.699634 GCCCATAAGATAGGCACTCCA 59.300 52.381 0.00 0.00 46.34 3.86
464 474 5.699458 ACTCGGACAAAAACGATTAGAACAT 59.301 36.000 0.00 0.00 38.56 2.71
465 475 5.051816 ACTCGGACAAAAACGATTAGAACA 58.948 37.500 0.00 0.00 38.56 3.18
474 484 5.503498 TGTATGAAAACTCGGACAAAAACG 58.497 37.500 0.00 0.00 0.00 3.60
480 490 7.658167 TCAAGTATTTGTATGAAAACTCGGACA 59.342 33.333 0.00 0.00 35.73 4.02
549 560 0.248296 TTCCTTTTGACGTTGCGTGC 60.248 50.000 0.00 0.00 41.37 5.34
553 564 6.156519 AGGATATTTTTCCTTTTGACGTTGC 58.843 36.000 0.00 0.00 43.88 4.17
565 576 9.634021 AAGACATTCTCCTAAGGATATTTTTCC 57.366 33.333 0.00 0.00 35.90 3.13
685 727 1.340889 GGCACATGAAAACTTGGAGCA 59.659 47.619 0.00 0.00 0.00 4.26
739 783 5.107220 GGTACATGAAAACACCGTAGAACAG 60.107 44.000 0.00 0.00 0.00 3.16
774 818 9.044150 CCATAGAACAAGCTTCAAAATGAAAAA 57.956 29.630 0.00 0.00 35.73 1.94
839 883 9.549509 CCGAACGAAAATTTGTGATTCTATAAA 57.450 29.630 0.00 0.00 0.00 1.40
841 885 8.481974 TCCGAACGAAAATTTGTGATTCTATA 57.518 30.769 0.00 0.00 0.00 1.31
845 889 5.685841 TCTCCGAACGAAAATTTGTGATTC 58.314 37.500 0.00 0.00 0.00 2.52
850 894 5.682943 TGATTCTCCGAACGAAAATTTGT 57.317 34.783 0.00 0.00 0.00 2.83
860 904 3.670627 GCCAACACAATGATTCTCCGAAC 60.671 47.826 0.00 0.00 0.00 3.95
894 938 5.817816 CAGAACCTATTCGGCTAGATTTGTT 59.182 40.000 0.00 0.00 40.04 2.83
896 940 5.914085 CAGAACCTATTCGGCTAGATTTG 57.086 43.478 0.00 0.00 40.04 2.32
906 952 1.920574 CACGTCTGCAGAACCTATTCG 59.079 52.381 20.19 17.83 40.04 3.34
916 962 2.807045 GAGTCGCCACGTCTGCAG 60.807 66.667 7.63 7.63 0.00 4.41
1053 1104 1.306654 ACGCTGGGAGGTGGGATTA 60.307 57.895 0.00 0.00 0.00 1.75
1212 1275 1.448119 CGACGCTCCTCTCCTGCATA 61.448 60.000 0.00 0.00 0.00 3.14
1514 1577 2.027073 GCGCACTTGATGACCACGA 61.027 57.895 0.30 0.00 0.00 4.35
1653 1716 0.752658 CATAGCCTCCGATGACCACA 59.247 55.000 0.00 0.00 0.00 4.17
1657 1720 3.896317 GGACATAGCCTCCGATGAC 57.104 57.895 0.00 0.00 0.00 3.06
1857 1920 2.655090 TGTCAATGAGGCAGTTCCAA 57.345 45.000 0.00 0.00 37.29 3.53
1987 2050 0.667487 TCGAGCGCCTCTTCACAAAG 60.667 55.000 2.29 0.00 0.00 2.77
2184 2247 3.164268 CTCCATCAAACCACATTTCCCA 58.836 45.455 0.00 0.00 0.00 4.37
2220 2283 5.964958 TCCTTTCATCCATTCTGTCAAAC 57.035 39.130 0.00 0.00 0.00 2.93
2318 2381 2.028130 TGTTTGCGGACTCCATTTGTT 58.972 42.857 0.00 0.00 0.00 2.83
2331 2394 3.840890 TGGTTAGGCTTTATGTTTGCG 57.159 42.857 0.00 0.00 0.00 4.85
2472 2535 2.647529 TTGCGTACATGTCGATCAGT 57.352 45.000 17.91 0.00 0.00 3.41
2529 2592 1.827969 AGGTTCCTCTCGTTCATCCTG 59.172 52.381 0.00 0.00 0.00 3.86
2622 2685 3.040206 GCAGGCCAGCTCCATCTGA 62.040 63.158 13.78 0.00 36.19 3.27
2643 2706 2.238646 CAAGGTGTATTGGTCAGGCCTA 59.761 50.000 3.98 0.00 38.35 3.93
2868 2931 4.526262 CCATCTCCATAGACCTTCGAGAAT 59.474 45.833 0.00 0.00 33.57 2.40
2941 3004 2.034878 TGAGCACCGAAGCATCTATCT 58.965 47.619 2.02 0.00 36.85 1.98
2942 3005 2.223923 ACTGAGCACCGAAGCATCTATC 60.224 50.000 2.02 0.00 36.85 2.08
2943 3006 1.759445 ACTGAGCACCGAAGCATCTAT 59.241 47.619 2.02 0.00 36.85 1.98
2946 3009 0.390340 TGACTGAGCACCGAAGCATC 60.390 55.000 2.02 0.00 36.85 3.91
2960 3023 0.987294 ATCCCAACTCCACCTGACTG 59.013 55.000 0.00 0.00 0.00 3.51
2962 3025 2.505819 ACATATCCCAACTCCACCTGAC 59.494 50.000 0.00 0.00 0.00 3.51
2963 3026 2.505407 CACATATCCCAACTCCACCTGA 59.495 50.000 0.00 0.00 0.00 3.86
2964 3027 2.505407 TCACATATCCCAACTCCACCTG 59.495 50.000 0.00 0.00 0.00 4.00
2966 3029 3.644966 TTCACATATCCCAACTCCACC 57.355 47.619 0.00 0.00 0.00 4.61
3008 3071 4.329545 GGGAGGACGCCTTGTGCA 62.330 66.667 0.00 0.00 42.22 4.57
3020 3083 4.884164 GGACATTAGAAGAACATTGGGAGG 59.116 45.833 0.00 0.00 0.00 4.30
3025 3088 7.086376 CCTGTTTGGACATTAGAAGAACATTG 58.914 38.462 0.00 0.00 38.35 2.82
3026 3089 6.209391 CCCTGTTTGGACATTAGAAGAACATT 59.791 38.462 0.00 0.00 38.35 2.71
3039 3102 1.228245 GCTCTGCCCTGTTTGGACA 60.228 57.895 0.00 0.00 38.35 4.02
3074 3137 4.907875 CCCAACTATCCTTCTCCTCCATTA 59.092 45.833 0.00 0.00 0.00 1.90
3240 3313 2.222976 CGTGAGCTGACATGATGAAAGC 60.223 50.000 13.56 13.56 32.37 3.51
3261 3334 2.283101 TGCACCCAATGACCCTGC 60.283 61.111 0.00 0.00 0.00 4.85
3304 3388 2.322658 ACTTCACGGAGGGAGTACAAA 58.677 47.619 0.00 0.00 0.00 2.83
3307 3391 3.087781 ACTAACTTCACGGAGGGAGTAC 58.912 50.000 0.00 0.00 0.00 2.73
3308 3392 3.446442 ACTAACTTCACGGAGGGAGTA 57.554 47.619 0.00 0.00 0.00 2.59
3309 3393 2.305858 ACTAACTTCACGGAGGGAGT 57.694 50.000 0.00 0.00 0.00 3.85
3310 3394 3.087031 TGTACTAACTTCACGGAGGGAG 58.913 50.000 0.00 0.00 0.00 4.30
3311 3395 3.159213 TGTACTAACTTCACGGAGGGA 57.841 47.619 0.00 0.00 0.00 4.20
3312 3396 3.947910 TTGTACTAACTTCACGGAGGG 57.052 47.619 0.00 0.00 0.00 4.30
3313 3397 4.879598 ACTTTGTACTAACTTCACGGAGG 58.120 43.478 0.00 0.00 0.00 4.30
3314 3398 5.981315 TCAACTTTGTACTAACTTCACGGAG 59.019 40.000 0.00 0.00 0.00 4.63
3315 3399 5.904941 TCAACTTTGTACTAACTTCACGGA 58.095 37.500 0.00 0.00 0.00 4.69
3316 3400 5.981315 TCTCAACTTTGTACTAACTTCACGG 59.019 40.000 0.00 0.00 0.00 4.94
3317 3401 6.474427 TGTCTCAACTTTGTACTAACTTCACG 59.526 38.462 0.00 0.00 0.00 4.35
3318 3402 7.491696 AGTGTCTCAACTTTGTACTAACTTCAC 59.508 37.037 0.00 0.00 0.00 3.18
3319 3403 7.553334 AGTGTCTCAACTTTGTACTAACTTCA 58.447 34.615 0.00 0.00 0.00 3.02
3320 3404 8.421673 AAGTGTCTCAACTTTGTACTAACTTC 57.578 34.615 0.00 0.00 37.05 3.01
3326 3410 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3327 3411 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
3328 3412 8.617809 GTCCAAAATAAGTGTCTCAACTTTGTA 58.382 33.333 0.00 0.00 40.77 2.41
3329 3413 7.480810 GTCCAAAATAAGTGTCTCAACTTTGT 58.519 34.615 0.00 0.00 40.77 2.83
3330 3414 6.632834 CGTCCAAAATAAGTGTCTCAACTTTG 59.367 38.462 0.00 0.00 40.77 2.77
3331 3415 6.238648 CCGTCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3332 3416 5.238650 CCGTCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3333 3417 4.755123 CCGTCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3334 3418 4.753107 TCCGTCCAAAATAAGTGTCTCAAC 59.247 41.667 0.00 0.00 0.00 3.18
3335 3419 4.963373 TCCGTCCAAAATAAGTGTCTCAA 58.037 39.130 0.00 0.00 0.00 3.02
3336 3420 4.562757 CCTCCGTCCAAAATAAGTGTCTCA 60.563 45.833 0.00 0.00 0.00 3.27
3337 3421 3.933332 CCTCCGTCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3338 3422 3.307480 CCCTCCGTCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3339 3423 3.007635 CCCTCCGTCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3340 3424 2.640826 TCCCTCCGTCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
3341 3425 3.270877 CTCCCTCCGTCCAAAATAAGTG 58.729 50.000 0.00 0.00 0.00 3.16
3342 3426 2.910977 ACTCCCTCCGTCCAAAATAAGT 59.089 45.455 0.00 0.00 0.00 2.24
3343 3427 3.629142 ACTCCCTCCGTCCAAAATAAG 57.371 47.619 0.00 0.00 0.00 1.73
3344 3428 5.703730 ATTACTCCCTCCGTCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
3345 3429 5.901276 ACTATTACTCCCTCCGTCCAAAATA 59.099 40.000 0.00 0.00 0.00 1.40
3346 3430 4.720273 ACTATTACTCCCTCCGTCCAAAAT 59.280 41.667 0.00 0.00 0.00 1.82
3347 3431 4.098894 ACTATTACTCCCTCCGTCCAAAA 58.901 43.478 0.00 0.00 0.00 2.44
3348 3432 3.703052 GACTATTACTCCCTCCGTCCAAA 59.297 47.826 0.00 0.00 0.00 3.28
3349 3433 3.294214 GACTATTACTCCCTCCGTCCAA 58.706 50.000 0.00 0.00 0.00 3.53
3350 3434 2.242965 TGACTATTACTCCCTCCGTCCA 59.757 50.000 0.00 0.00 0.00 4.02
3351 3435 2.885894 CTGACTATTACTCCCTCCGTCC 59.114 54.545 0.00 0.00 0.00 4.79
3352 3436 2.885894 CCTGACTATTACTCCCTCCGTC 59.114 54.545 0.00 0.00 0.00 4.79
3353 3437 2.424523 CCCTGACTATTACTCCCTCCGT 60.425 54.545 0.00 0.00 0.00 4.69
3354 3438 2.240279 CCCTGACTATTACTCCCTCCG 58.760 57.143 0.00 0.00 0.00 4.63
3355 3439 2.610873 CCCCTGACTATTACTCCCTCC 58.389 57.143 0.00 0.00 0.00 4.30
3356 3440 1.972075 GCCCCTGACTATTACTCCCTC 59.028 57.143 0.00 0.00 0.00 4.30
3357 3441 1.294068 TGCCCCTGACTATTACTCCCT 59.706 52.381 0.00 0.00 0.00 4.20
3358 3442 1.802553 TGCCCCTGACTATTACTCCC 58.197 55.000 0.00 0.00 0.00 4.30
3359 3443 3.496870 CCATTGCCCCTGACTATTACTCC 60.497 52.174 0.00 0.00 0.00 3.85
3360 3444 3.496870 CCCATTGCCCCTGACTATTACTC 60.497 52.174 0.00 0.00 0.00 2.59
3361 3445 2.443255 CCCATTGCCCCTGACTATTACT 59.557 50.000 0.00 0.00 0.00 2.24
3395 3479 4.039609 TCACTCTGAGAATTGTGAGCTGAA 59.960 41.667 12.44 0.00 34.94 3.02
3412 3496 7.222872 AGAGTCAAACAATTCTTCATCACTCT 58.777 34.615 0.00 0.00 33.61 3.24
3480 3564 6.094881 CAGGATTGCTATCGGTCCTTTAAAAA 59.905 38.462 2.01 0.00 39.01 1.94
3481 3565 5.588648 CAGGATTGCTATCGGTCCTTTAAAA 59.411 40.000 2.01 0.00 39.01 1.52
3482 3566 5.123227 CAGGATTGCTATCGGTCCTTTAAA 58.877 41.667 2.01 0.00 39.01 1.52
3483 3567 4.163458 ACAGGATTGCTATCGGTCCTTTAA 59.837 41.667 2.01 0.00 39.01 1.52
3484 3568 3.709653 ACAGGATTGCTATCGGTCCTTTA 59.290 43.478 2.01 0.00 39.01 1.85
3485 3569 2.505819 ACAGGATTGCTATCGGTCCTTT 59.494 45.455 2.01 0.00 39.01 3.11
3486 3570 2.119495 ACAGGATTGCTATCGGTCCTT 58.881 47.619 2.01 0.00 39.01 3.36
3487 3571 1.414181 CACAGGATTGCTATCGGTCCT 59.586 52.381 2.01 0.00 41.65 3.85
3488 3572 1.139058 ACACAGGATTGCTATCGGTCC 59.861 52.381 2.01 0.00 0.00 4.46
3489 3573 2.205074 CACACAGGATTGCTATCGGTC 58.795 52.381 2.01 0.00 0.00 4.79
3490 3574 1.743772 GCACACAGGATTGCTATCGGT 60.744 52.381 2.01 0.74 35.74 4.69
3491 3575 0.940126 GCACACAGGATTGCTATCGG 59.060 55.000 2.01 0.14 35.74 4.18
3492 3576 1.655484 TGCACACAGGATTGCTATCG 58.345 50.000 2.01 0.00 39.62 2.92
3493 3577 4.818546 ACTTATGCACACAGGATTGCTATC 59.181 41.667 0.00 0.00 39.62 2.08
3494 3578 4.577693 CACTTATGCACACAGGATTGCTAT 59.422 41.667 0.00 0.00 39.62 2.97
3555 3639 3.531538 ACTTGTTCAAGACACACGACAT 58.468 40.909 17.75 0.00 38.18 3.06
3594 3679 0.029035 CAGCGCATCAGCTTTCCATC 59.971 55.000 11.47 0.00 46.80 3.51
3598 3683 1.062206 GCTCAGCGCATCAGCTTTC 59.938 57.895 11.47 0.00 46.80 2.62
3599 3684 1.673337 TGCTCAGCGCATCAGCTTT 60.673 52.632 21.32 0.00 46.80 3.51
3600 3685 2.046604 TGCTCAGCGCATCAGCTT 60.047 55.556 21.32 0.00 46.80 3.74
3638 3723 0.391130 CCTTCATCGGACCTTTCGCA 60.391 55.000 0.00 0.00 0.00 5.10
3641 3726 3.676093 AGAAACCTTCATCGGACCTTTC 58.324 45.455 0.00 0.00 0.00 2.62
3686 3771 7.448777 AGTCTGAAGATGACTCTGTTTACTACA 59.551 37.037 0.00 0.00 40.35 2.74
3687 3772 7.822658 AGTCTGAAGATGACTCTGTTTACTAC 58.177 38.462 0.00 0.00 40.35 2.73
3689 3774 6.909550 AGTCTGAAGATGACTCTGTTTACT 57.090 37.500 0.00 0.00 40.35 2.24
3706 3791 4.825422 CTGCTTTTATGACAGGAGTCTGA 58.175 43.478 0.00 0.00 45.20 3.27
3712 3797 2.289382 TGACGCTGCTTTTATGACAGGA 60.289 45.455 0.00 0.00 31.94 3.86
3714 3799 2.995939 TCTGACGCTGCTTTTATGACAG 59.004 45.455 0.00 0.00 34.48 3.51
3761 3846 7.482169 TGTAAAGAATAGGAGTGATCACAGT 57.518 36.000 27.02 13.31 0.00 3.55
3849 3950 5.011635 TGTGCTCTGTATAAGAAGGTCACAA 59.988 40.000 0.00 0.00 33.37 3.33
3864 3965 7.228507 TGAACATTAACATAAAGTGTGCTCTGT 59.771 33.333 0.00 0.00 41.14 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.