Multiple sequence alignment - TraesCS6B01G327500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G327500 chr6B 100.000 5650 0 0 1 5650 577188605 577182956 0.000000e+00 10434.0
1 TraesCS6B01G327500 chr6B 93.103 116 7 1 2494 2608 43284099 43283984 9.740000e-38 169.0
2 TraesCS6B01G327500 chr6B 91.597 119 9 1 2491 2608 35636854 35636972 4.530000e-36 163.0
3 TraesCS6B01G327500 chr6D 91.216 3085 146 55 2609 5650 386292868 386289866 0.000000e+00 4080.0
4 TraesCS6B01G327500 chr6D 88.040 2525 147 68 64 2481 386295385 386292909 0.000000e+00 2846.0
5 TraesCS6B01G327500 chr6A 91.634 1769 91 30 3089 4833 531395989 531394254 0.000000e+00 2394.0
6 TraesCS6B01G327500 chr6A 85.970 2238 142 85 380 2492 531398846 531396656 0.000000e+00 2235.0
7 TraesCS6B01G327500 chr6A 92.547 483 30 3 2608 3090 531396626 531396150 0.000000e+00 688.0
8 TraesCS6B01G327500 chr6A 80.537 298 28 14 4847 5141 531393723 531393453 9.600000e-48 202.0
9 TraesCS6B01G327500 chr6A 90.756 119 10 1 2491 2608 395249161 395249279 2.110000e-34 158.0
10 TraesCS6B01G327500 chr6A 86.184 152 12 4 5146 5292 531390452 531390305 7.580000e-34 156.0
11 TraesCS6B01G327500 chr6A 90.826 109 6 2 5456 5564 531390235 531390131 5.900000e-30 143.0
12 TraesCS6B01G327500 chr4D 89.213 343 27 6 2611 2946 386500404 386500065 2.430000e-113 420.0
13 TraesCS6B01G327500 chr4D 82.716 162 20 5 3921 4078 403148207 403148364 2.750000e-28 137.0
14 TraesCS6B01G327500 chr4D 89.899 99 10 0 2139 2237 403146274 403146372 1.650000e-25 128.0
15 TraesCS6B01G327500 chr7B 93.220 118 7 1 2492 2608 117020128 117020245 7.530000e-39 172.0
16 TraesCS6B01G327500 chr7B 92.982 114 7 1 2494 2606 188973117 188973230 1.260000e-36 165.0
17 TraesCS6B01G327500 chr3B 92.437 119 8 1 2494 2611 489685011 489684893 9.740000e-38 169.0
18 TraesCS6B01G327500 chr4B 91.667 120 8 2 2490 2608 15260628 15260510 1.260000e-36 165.0
19 TraesCS6B01G327500 chr4B 83.333 162 19 5 3921 4078 499901187 499901344 5.900000e-30 143.0
20 TraesCS6B01G327500 chr4B 89.899 99 10 0 2139 2237 499899231 499899329 1.650000e-25 128.0
21 TraesCS6B01G327500 chr2B 92.308 117 8 1 2493 2608 670297932 670298048 1.260000e-36 165.0
22 TraesCS6B01G327500 chr5B 91.057 123 8 3 2494 2614 547368621 547368742 4.530000e-36 163.0
23 TraesCS6B01G327500 chr4A 80.925 173 33 0 3914 4086 579430507 579430679 2.750000e-28 137.0
24 TraesCS6B01G327500 chr4A 82.099 162 21 5 3921 4078 60670618 60670775 1.280000e-26 132.0
25 TraesCS6B01G327500 chr4A 82.857 140 20 2 2101 2237 60668625 60668763 7.690000e-24 122.0
26 TraesCS6B01G327500 chr3D 98.438 64 1 0 3 66 453762857 453762920 4.630000e-21 113.0
27 TraesCS6B01G327500 chr1D 98.413 63 0 1 3 65 44159885 44159946 5.980000e-20 110.0
28 TraesCS6B01G327500 chr1D 100.000 49 0 0 16 64 44159718 44159670 2.170000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G327500 chr6B 577182956 577188605 5649 True 10434.000000 10434 100.000000 1 5650 1 chr6B.!!$R2 5649
1 TraesCS6B01G327500 chr6D 386289866 386295385 5519 True 3463.000000 4080 89.628000 64 5650 2 chr6D.!!$R1 5586
2 TraesCS6B01G327500 chr6A 531390131 531398846 8715 True 969.666667 2394 87.949667 380 5564 6 chr6A.!!$R1 5184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.108138 CACCGCCGGAGAAAGATTCT 60.108 55.0 11.71 0.0 44.21 2.40 F
374 382 0.181350 GTGGGCAGCATTAGGTAGCT 59.819 55.0 0.00 0.0 42.94 3.32 F
1828 1988 0.099791 AAAAACCGCGGTGAACAGTG 59.900 50.0 34.95 0.6 0.00 3.66 F
3274 3622 0.106918 TGAACTTGGACGTTTGGCCT 60.107 50.0 3.32 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 1988 0.160392 CTCATGATCGCGCATCGTTC 59.840 55.0 8.75 0.0 39.67 3.95 R
1835 1995 0.447801 AACCAAACTCATGATCGCGC 59.552 50.0 0.00 0.0 0.00 6.86 R
3361 3709 0.108804 AGTCAACTATGTCACGCCCG 60.109 55.0 0.00 0.0 0.00 6.13 R
5105 6017 0.460284 GTGCACTGTACCGGATGAGG 60.460 60.0 9.46 0.0 37.30 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.181967 CGCGAGCACTGTAGCACC 61.182 66.667 0.00 0.00 36.85 5.01
27 28 2.815647 GCGAGCACTGTAGCACCC 60.816 66.667 0.00 0.00 36.85 4.61
28 29 2.973899 CGAGCACTGTAGCACCCT 59.026 61.111 5.32 0.00 36.85 4.34
29 30 1.446792 CGAGCACTGTAGCACCCTG 60.447 63.158 5.32 0.00 36.85 4.45
30 31 1.743252 GAGCACTGTAGCACCCTGC 60.743 63.158 5.32 0.00 45.46 4.85
31 32 2.747855 GCACTGTAGCACCCTGCC 60.748 66.667 0.00 0.00 46.52 4.85
32 33 2.434884 CACTGTAGCACCCTGCCG 60.435 66.667 0.00 0.00 46.52 5.69
33 34 2.923035 ACTGTAGCACCCTGCCGT 60.923 61.111 0.00 0.00 46.52 5.68
34 35 2.434884 CTGTAGCACCCTGCCGTG 60.435 66.667 0.00 0.00 46.52 4.94
41 42 4.954970 ACCCTGCCGTGCCACAAG 62.955 66.667 0.00 0.00 0.00 3.16
52 53 4.598257 CCACAAGGCACGGTAGAG 57.402 61.111 0.00 0.00 0.00 2.43
53 54 1.079127 CCACAAGGCACGGTAGAGG 60.079 63.158 0.00 0.00 0.00 3.69
54 55 1.541310 CCACAAGGCACGGTAGAGGA 61.541 60.000 0.00 0.00 0.00 3.71
55 56 0.108615 CACAAGGCACGGTAGAGGAG 60.109 60.000 0.00 0.00 0.00 3.69
56 57 1.153549 CAAGGCACGGTAGAGGAGC 60.154 63.158 0.00 0.00 0.00 4.70
57 58 2.359967 AAGGCACGGTAGAGGAGCC 61.360 63.158 0.00 0.00 45.54 4.70
62 63 2.806237 CGGTAGAGGAGCCGGTTC 59.194 66.667 10.28 10.28 43.85 3.62
63 64 2.783288 CGGTAGAGGAGCCGGTTCC 61.783 68.421 28.69 28.69 43.85 3.62
64 65 2.783288 GGTAGAGGAGCCGGTTCCG 61.783 68.421 29.15 4.08 42.29 4.30
65 66 2.050934 GTAGAGGAGCCGGTTCCGT 61.051 63.158 29.15 22.75 42.29 4.69
66 67 2.050350 TAGAGGAGCCGGTTCCGTG 61.050 63.158 29.15 3.35 42.29 4.94
67 68 2.488771 TAGAGGAGCCGGTTCCGTGA 62.489 60.000 29.15 16.42 42.29 4.35
83 84 1.455786 CGTGACTCTTGCGGTTACAAG 59.544 52.381 0.00 0.00 46.86 3.16
87 88 0.605319 CTCTTGCGGTTACAAGCCCA 60.605 55.000 0.00 0.00 45.43 5.36
89 90 1.586154 CTTGCGGTTACAAGCCCAGG 61.586 60.000 0.20 0.00 40.53 4.45
138 139 4.735132 CGCACCGCCGGAGAAAGA 62.735 66.667 11.71 0.00 0.00 2.52
139 140 2.125106 GCACCGCCGGAGAAAGAT 60.125 61.111 11.71 0.00 0.00 2.40
141 142 1.706287 GCACCGCCGGAGAAAGATTC 61.706 60.000 11.71 0.00 0.00 2.52
142 143 0.108138 CACCGCCGGAGAAAGATTCT 60.108 55.000 11.71 0.00 44.21 2.40
162 163 1.298788 CCCGTGTTTCAAACGTGGC 60.299 57.895 5.29 0.00 39.38 5.01
180 187 2.838202 TGGCTCTCCGGAGTAAGAAAAT 59.162 45.455 30.17 0.00 41.38 1.82
183 190 5.046159 TGGCTCTCCGGAGTAAGAAAATAAA 60.046 40.000 30.17 6.14 41.38 1.40
188 195 8.276252 TCTCCGGAGTAAGAAAATAAAAATGG 57.724 34.615 30.17 0.00 0.00 3.16
197 204 7.425577 AAGAAAATAAAAATGGAAGCACTGC 57.574 32.000 0.00 0.00 0.00 4.40
199 206 7.163441 AGAAAATAAAAATGGAAGCACTGCAT 58.837 30.769 3.30 0.00 37.78 3.96
219 226 4.493547 CATTTATGCAAAATCGTGGTGGT 58.506 39.130 0.00 0.00 0.00 4.16
220 227 3.840890 TTATGCAAAATCGTGGTGGTC 57.159 42.857 0.00 0.00 0.00 4.02
227 234 2.851263 AATCGTGGTGGTCTTTGCTA 57.149 45.000 0.00 0.00 0.00 3.49
243 250 1.618837 TGCTAGTGAGTCGCTTCCTTT 59.381 47.619 12.26 0.00 0.00 3.11
267 274 5.465532 TTGCACCTCAATAAATCTGCAAA 57.534 34.783 0.54 0.00 40.65 3.68
304 311 1.106285 AGAAATGCGCAAGATTCCCC 58.894 50.000 17.11 0.00 43.02 4.81
320 327 2.513897 CCGGCGGGTGAAGATTCC 60.514 66.667 20.56 0.00 0.00 3.01
371 379 0.837272 GAGGTGGGCAGCATTAGGTA 59.163 55.000 0.00 0.00 0.00 3.08
373 381 0.819666 GGTGGGCAGCATTAGGTAGC 60.820 60.000 0.00 0.00 0.00 3.58
374 382 0.181350 GTGGGCAGCATTAGGTAGCT 59.819 55.000 0.00 0.00 42.94 3.32
375 383 1.416401 GTGGGCAGCATTAGGTAGCTA 59.584 52.381 0.00 0.00 39.50 3.32
376 384 1.694150 TGGGCAGCATTAGGTAGCTAG 59.306 52.381 1.31 0.00 39.50 3.42
377 385 1.609320 GGGCAGCATTAGGTAGCTAGC 60.609 57.143 15.19 15.19 39.50 3.42
406 414 8.770828 GCATGATTAAATTGCAGCAAATATTCT 58.229 29.630 12.97 0.00 36.40 2.40
432 440 3.526931 TCTATTCCAGCTTTGGACTCG 57.473 47.619 0.00 0.00 37.76 4.18
450 464 1.595794 TCGTCTCCAAAGCAAAACGTC 59.404 47.619 0.00 0.00 0.00 4.34
465 479 7.827619 AGCAAAACGTCGAAAAATAAAAGAAG 58.172 30.769 0.00 0.00 0.00 2.85
466 480 7.698970 AGCAAAACGTCGAAAAATAAAAGAAGA 59.301 29.630 0.00 0.00 0.00 2.87
504 528 1.700955 TACCCCTATGCTCGGAACTC 58.299 55.000 0.00 0.00 0.00 3.01
618 652 1.706443 GTTTTCCCAGACTCCGTACG 58.294 55.000 8.69 8.69 0.00 3.67
622 656 4.849329 CCAGACTCCGTACGCCGC 62.849 72.222 10.49 0.00 34.38 6.53
637 671 3.172575 CGCACCGTACAGCTGACG 61.173 66.667 23.35 23.30 40.02 4.35
724 758 2.202557 CGTGACATCGCGCACCTA 60.203 61.111 8.75 0.00 43.06 3.08
725 759 2.505498 CGTGACATCGCGCACCTAC 61.505 63.158 8.75 0.00 43.06 3.18
726 760 2.165301 GTGACATCGCGCACCTACC 61.165 63.158 8.75 0.00 0.00 3.18
727 761 2.585247 GACATCGCGCACCTACCC 60.585 66.667 8.75 0.00 0.00 3.69
769 805 2.159627 TCGAACGAACTACTTACCGGAC 59.840 50.000 9.46 0.00 0.00 4.79
870 908 2.329267 TCTGAGAGAAAGCTGGTGGAA 58.671 47.619 0.00 0.00 0.00 3.53
1040 1101 1.592223 CTTCCTTCCTCCGCGACTT 59.408 57.895 8.23 0.00 0.00 3.01
1045 1106 3.589654 TTCCTCCGCGACTTGCCTG 62.590 63.158 8.23 0.00 42.08 4.85
1168 1248 3.782443 CTTCCTTCCCCCGGACGG 61.782 72.222 0.73 3.25 41.80 4.79
1202 1282 2.022129 CCGTTTCTTCGCTGCGTCT 61.022 57.895 22.48 0.00 0.00 4.18
1203 1283 1.412606 CGTTTCTTCGCTGCGTCTC 59.587 57.895 22.48 7.06 0.00 3.36
1204 1284 1.004277 CGTTTCTTCGCTGCGTCTCT 61.004 55.000 22.48 0.00 0.00 3.10
1205 1285 0.711118 GTTTCTTCGCTGCGTCTCTC 59.289 55.000 22.48 6.10 0.00 3.20
1263 1359 2.980177 TTCGCGGAGAGGAGGAGGA 61.980 63.158 6.13 0.00 0.00 3.71
1264 1360 2.895426 TTCGCGGAGAGGAGGAGGAG 62.895 65.000 6.13 0.00 0.00 3.69
1265 1361 2.520741 GCGGAGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1359 1457 3.060895 CGCAGATTCGTCCTAGTGTTTTC 59.939 47.826 0.00 0.00 0.00 2.29
1364 1462 7.095355 GCAGATTCGTCCTAGTGTTTTCTTTTA 60.095 37.037 0.00 0.00 0.00 1.52
1365 1463 8.770828 CAGATTCGTCCTAGTGTTTTCTTTTAA 58.229 33.333 0.00 0.00 0.00 1.52
1367 1465 9.756461 GATTCGTCCTAGTGTTTTCTTTTAATC 57.244 33.333 0.00 0.00 0.00 1.75
1369 1467 8.665643 TCGTCCTAGTGTTTTCTTTTAATCAA 57.334 30.769 0.00 0.00 0.00 2.57
1477 1585 1.137479 TGTTCCGTTCAGTTCCGTTCT 59.863 47.619 0.00 0.00 0.00 3.01
1479 1587 1.034356 TCCGTTCAGTTCCGTTCTGA 58.966 50.000 0.00 0.00 39.71 3.27
1480 1588 1.000607 TCCGTTCAGTTCCGTTCTGAG 60.001 52.381 0.00 0.00 41.87 3.35
1481 1589 1.000607 CCGTTCAGTTCCGTTCTGAGA 60.001 52.381 0.00 0.00 41.87 3.27
1484 1592 1.257743 TCAGTTCCGTTCTGAGAGGG 58.742 55.000 0.00 0.00 37.07 4.30
1501 1636 2.235155 GAGGGAGAGAGAGTTGGGAAAC 59.765 54.545 0.00 0.00 0.00 2.78
1505 1640 3.181454 GGAGAGAGAGTTGGGAAACACAA 60.181 47.826 0.00 0.00 0.00 3.33
1552 1687 5.647589 ACGAGAAGAGGTTTTTGGTTTTTC 58.352 37.500 0.00 0.00 0.00 2.29
1625 1767 3.032459 TGCCACTACCATATTCGTACCA 58.968 45.455 0.00 0.00 0.00 3.25
1750 1895 2.333069 CCTGCTCCTCCTCCATGAATA 58.667 52.381 0.00 0.00 0.00 1.75
1759 1904 3.649981 CTCCTCCATGAATATCCCACACT 59.350 47.826 0.00 0.00 0.00 3.55
1761 1906 3.649981 CCTCCATGAATATCCCACACTCT 59.350 47.826 0.00 0.00 0.00 3.24
1767 1912 5.282055 TGAATATCCCACACTCTAGCTTG 57.718 43.478 0.00 0.00 0.00 4.01
1768 1913 4.716784 TGAATATCCCACACTCTAGCTTGT 59.283 41.667 0.00 0.00 0.00 3.16
1771 1916 2.325484 TCCCACACTCTAGCTTGTGAA 58.675 47.619 16.17 3.24 45.03 3.18
1779 1938 2.229062 CTCTAGCTTGTGAACACCGAGA 59.771 50.000 0.00 0.00 0.00 4.04
1783 1942 1.502231 CTTGTGAACACCGAGACCAG 58.498 55.000 2.46 0.00 0.00 4.00
1828 1988 0.099791 AAAAACCGCGGTGAACAGTG 59.900 50.000 34.95 0.60 0.00 3.66
1831 1991 1.433837 AACCGCGGTGAACAGTGAAC 61.434 55.000 34.95 0.00 0.00 3.18
1835 1995 0.163788 GCGGTGAACAGTGAACGATG 59.836 55.000 0.00 0.00 0.00 3.84
1840 2000 1.614227 GAACAGTGAACGATGCGCGA 61.614 55.000 12.10 0.00 44.57 5.87
1851 2012 1.655600 CGATGCGCGATCATGAGTTTG 60.656 52.381 12.10 0.00 44.57 2.93
1862 2023 4.163441 TCATGAGTTTGGTTTCTGTGGA 57.837 40.909 0.00 0.00 0.00 4.02
1888 2049 3.452755 TCTGCTGGTATATTCACCGTG 57.547 47.619 0.00 0.00 41.88 4.94
1889 2050 2.764010 TCTGCTGGTATATTCACCGTGT 59.236 45.455 0.00 0.00 41.88 4.49
1965 2126 3.669949 AGGCCAGGGTAAGATACAGATT 58.330 45.455 5.01 0.00 0.00 2.40
2087 2265 2.040412 AGAGGTTGCGAGATTCCCTTTT 59.960 45.455 0.00 0.00 0.00 2.27
2112 2293 5.625311 GCTAACTGTGTGAATTTACTGTTGC 59.375 40.000 16.51 14.49 38.71 4.17
2255 2436 0.609662 AAGTGCCATTTGTCATGCCC 59.390 50.000 0.00 0.00 0.00 5.36
2258 2439 0.334335 TGCCATTTGTCATGCCCCTA 59.666 50.000 0.00 0.00 0.00 3.53
2265 2446 0.618458 TGTCATGCCCCTACAGAACC 59.382 55.000 0.00 0.00 0.00 3.62
2290 2471 1.486310 ACCTCTGTGAAGTGCAGTTCA 59.514 47.619 28.96 28.96 35.60 3.18
2299 2480 5.806502 TGTGAAGTGCAGTTCAATCTTTTTG 59.193 36.000 32.95 0.00 38.17 2.44
2300 2481 5.807011 GTGAAGTGCAGTTCAATCTTTTTGT 59.193 36.000 32.95 0.00 38.17 2.83
2466 2649 0.735978 TACCGTGCAAGTGATCTGCG 60.736 55.000 0.00 0.00 0.00 5.18
2470 2653 2.036571 TGCAAGTGATCTGCGCCTG 61.037 57.895 4.18 0.00 0.00 4.85
2471 2654 2.037136 GCAAGTGATCTGCGCCTGT 61.037 57.895 4.18 0.00 0.00 4.00
2472 2655 0.740868 GCAAGTGATCTGCGCCTGTA 60.741 55.000 4.18 0.00 0.00 2.74
2473 2656 1.284657 CAAGTGATCTGCGCCTGTAG 58.715 55.000 4.18 0.00 0.00 2.74
2474 2657 0.176680 AAGTGATCTGCGCCTGTAGG 59.823 55.000 4.18 0.00 38.53 3.18
2495 2678 2.735762 GCTGTAGGCTGCAGTGTAGTAC 60.736 54.545 29.20 10.72 39.07 2.73
2497 2680 2.753452 TGTAGGCTGCAGTGTAGTACTC 59.247 50.000 16.64 0.00 37.60 2.59
2498 2681 1.187087 AGGCTGCAGTGTAGTACTCC 58.813 55.000 16.64 4.27 37.60 3.85
2499 2682 0.175989 GGCTGCAGTGTAGTACTCCC 59.824 60.000 16.64 0.00 37.60 4.30
2501 2684 1.135333 GCTGCAGTGTAGTACTCCCTC 59.865 57.143 16.64 0.00 37.60 4.30
2502 2685 1.751924 CTGCAGTGTAGTACTCCCTCC 59.248 57.143 5.25 0.00 37.60 4.30
2503 2686 0.739561 GCAGTGTAGTACTCCCTCCG 59.260 60.000 0.00 0.00 37.60 4.63
2504 2687 1.954258 GCAGTGTAGTACTCCCTCCGT 60.954 57.143 0.00 0.00 37.60 4.69
2506 2689 1.064832 AGTGTAGTACTCCCTCCGTCC 60.065 57.143 0.00 0.00 33.17 4.79
2507 2690 0.994247 TGTAGTACTCCCTCCGTCCA 59.006 55.000 0.00 0.00 0.00 4.02
2508 2691 1.064906 TGTAGTACTCCCTCCGTCCAG 60.065 57.143 0.00 0.00 0.00 3.86
2510 2693 0.702902 AGTACTCCCTCCGTCCAGAA 59.297 55.000 0.00 0.00 0.00 3.02
2513 2696 2.544844 ACTCCCTCCGTCCAGAATTA 57.455 50.000 0.00 0.00 0.00 1.40
2514 2697 2.108970 ACTCCCTCCGTCCAGAATTAC 58.891 52.381 0.00 0.00 0.00 1.89
2516 2699 2.766828 CTCCCTCCGTCCAGAATTACTT 59.233 50.000 0.00 0.00 0.00 2.24
2518 2701 2.236395 CCCTCCGTCCAGAATTACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
2519 2702 3.522553 CCTCCGTCCAGAATTACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
2520 2703 3.179830 CTCCGTCCAGAATTACTTGTCG 58.820 50.000 0.00 0.00 0.00 4.35
2521 2704 2.821378 TCCGTCCAGAATTACTTGTCGA 59.179 45.455 0.00 0.00 0.00 4.20
2524 2707 4.482386 CGTCCAGAATTACTTGTCGAAGA 58.518 43.478 0.00 0.00 32.98 2.87
2525 2708 4.921515 CGTCCAGAATTACTTGTCGAAGAA 59.078 41.667 0.00 0.00 39.69 2.52
2526 2709 5.404366 CGTCCAGAATTACTTGTCGAAGAAA 59.596 40.000 0.00 0.00 39.69 2.52
2527 2710 6.090898 CGTCCAGAATTACTTGTCGAAGAAAT 59.909 38.462 0.00 0.00 39.69 2.17
2528 2711 7.457060 GTCCAGAATTACTTGTCGAAGAAATC 58.543 38.462 0.00 0.00 39.69 2.17
2558 2741 9.886132 AAAAACGGATGTATCTAGAACTAACAT 57.114 29.630 11.13 11.13 33.63 2.71
2562 2745 9.298250 ACGGATGTATCTAGAACTAACATATGT 57.702 33.333 1.41 1.41 31.19 2.29
2563 2746 9.776158 CGGATGTATCTAGAACTAACATATGTC 57.224 37.037 9.23 0.00 31.19 3.06
2581 2764 9.950496 ACATATGTCTAATACATCCATTTCTCC 57.050 33.333 1.41 0.00 46.15 3.71
2582 2765 9.948964 CATATGTCTAATACATCCATTTCTCCA 57.051 33.333 0.00 0.00 46.15 3.86
2593 2776 8.738645 ACATCCATTTCTCCAATAAGTACTTC 57.261 34.615 12.39 0.00 0.00 3.01
2594 2777 7.775561 ACATCCATTTCTCCAATAAGTACTTCC 59.224 37.037 12.39 0.00 0.00 3.46
2595 2778 6.346096 TCCATTTCTCCAATAAGTACTTCCG 58.654 40.000 12.39 1.64 0.00 4.30
2596 2779 5.527582 CCATTTCTCCAATAAGTACTTCCGG 59.472 44.000 12.39 11.10 0.00 5.14
2597 2780 6.346096 CATTTCTCCAATAAGTACTTCCGGA 58.654 40.000 12.39 14.63 0.00 5.14
2598 2781 4.996788 TCTCCAATAAGTACTTCCGGAC 57.003 45.455 12.39 0.00 0.00 4.79
2599 2782 3.379372 TCTCCAATAAGTACTTCCGGACG 59.621 47.826 12.39 4.48 0.00 4.79
2600 2783 2.428171 TCCAATAAGTACTTCCGGACGG 59.572 50.000 12.39 3.96 0.00 4.79
2601 2784 2.428171 CCAATAAGTACTTCCGGACGGA 59.572 50.000 12.39 9.76 43.52 4.69
2602 2785 3.490419 CCAATAAGTACTTCCGGACGGAG 60.490 52.174 12.39 6.49 46.06 4.63
2603 2786 1.755179 TAAGTACTTCCGGACGGAGG 58.245 55.000 19.51 19.51 46.06 4.30
2604 2787 0.969409 AAGTACTTCCGGACGGAGGG 60.969 60.000 23.78 17.53 46.06 4.30
2605 2788 1.379044 GTACTTCCGGACGGAGGGA 60.379 63.158 23.78 15.14 46.06 4.20
2606 2789 1.077212 TACTTCCGGACGGAGGGAG 60.077 63.158 23.78 16.33 46.06 4.30
2649 2832 6.016108 AGACTAACGAGTATCATTAAGAGGGC 60.016 42.308 0.00 0.00 35.45 5.19
2662 2845 6.823689 TCATTAAGAGGGCAGATCAACTTAAC 59.176 38.462 0.00 0.00 34.34 2.01
2663 2846 4.917906 AAGAGGGCAGATCAACTTAACT 57.082 40.909 0.00 0.00 0.00 2.24
2667 2850 5.071115 AGAGGGCAGATCAACTTAACTATCC 59.929 44.000 0.00 0.00 0.00 2.59
2675 2858 8.420222 CAGATCAACTTAACTATCCTCTGATGT 58.580 37.037 0.00 0.00 31.49 3.06
2690 2873 8.899427 TCCTCTGATGTAGAATTTGAATGATC 57.101 34.615 0.00 0.00 34.32 2.92
2701 2884 5.909621 ATTTGAATGATCTTGGTCCAGTG 57.090 39.130 0.00 0.00 0.00 3.66
2733 2917 5.113446 ACTCCTACTCCTATTTCTGACGA 57.887 43.478 0.00 0.00 0.00 4.20
2836 3021 5.416952 GGTCTACCTAACTAGTACAGTGCAA 59.583 44.000 0.00 0.00 37.63 4.08
2865 3050 4.077822 GGGAATCCAATGGTCATCATCTC 58.922 47.826 0.09 0.00 34.44 2.75
2963 3148 1.852157 TGGAGTGCCAATCCCCACT 60.852 57.895 8.98 0.00 42.49 4.00
2984 3169 2.751166 ACAAGAGATACAACGCTGCT 57.249 45.000 0.00 0.00 0.00 4.24
3124 3471 9.762933 TTTATGATGATTGATTCACTGATCGTA 57.237 29.630 2.64 2.64 37.11 3.43
3274 3622 0.106918 TGAACTTGGACGTTTGGCCT 60.107 50.000 3.32 0.00 0.00 5.19
3297 3645 7.360361 CCTTAATTTTGGTGAAGTGTACACTC 58.640 38.462 28.04 20.28 41.58 3.51
3299 3647 6.767524 AATTTTGGTGAAGTGTACACTCAA 57.232 33.333 28.04 22.71 41.58 3.02
3303 3651 3.936453 TGGTGAAGTGTACACTCAACAAC 59.064 43.478 28.56 26.92 41.58 3.32
3311 3659 4.508124 GTGTACACTCAACAACCTCTTCTG 59.492 45.833 18.92 0.00 0.00 3.02
3313 3661 4.222124 ACACTCAACAACCTCTTCTGTT 57.778 40.909 0.00 0.00 36.19 3.16
3343 3691 7.443879 GTGTAGGGTCCTTACTACTGTAGTATC 59.556 44.444 24.04 15.57 40.66 2.24
3361 3709 0.596600 TCGGTGCTGACAAGTCGTTC 60.597 55.000 0.00 0.00 0.00 3.95
3532 3880 6.841229 TGTCTCTCTGACCATGGTAGAATTAT 59.159 38.462 19.80 0.00 44.75 1.28
3703 4051 5.873179 ATGACATCGTGTTCGGTTAAAAT 57.127 34.783 0.00 0.00 37.69 1.82
3747 4095 2.840651 TCCCTTTCTTCAGAGGATCACC 59.159 50.000 0.00 0.00 37.82 4.02
3842 4190 7.936847 TCACACAAACTACAGGTAATTGAGATT 59.063 33.333 10.05 0.00 0.00 2.40
3854 4202 7.593273 CAGGTAATTGAGATTGAGATACTCGAC 59.407 40.741 0.00 0.00 32.35 4.20
4104 4455 2.824489 GCGCCCCTTGCCTTCTAC 60.824 66.667 0.00 0.00 36.24 2.59
4111 4463 2.355209 CCCCTTGCCTTCTACTCTGAAC 60.355 54.545 0.00 0.00 0.00 3.18
4120 4472 5.415221 CCTTCTACTCTGAACCATCTGAAC 58.585 45.833 0.00 0.00 33.72 3.18
4127 4487 2.744202 CTGAACCATCTGAACCTTTCCG 59.256 50.000 0.00 0.00 0.00 4.30
4142 4502 3.379372 CCTTTCCGTATCTCGTTACTCCA 59.621 47.826 0.00 0.00 37.94 3.86
4145 4505 3.614092 TCCGTATCTCGTTACTCCAACT 58.386 45.455 0.00 0.00 37.94 3.16
4167 4527 3.568007 TGTGGTTCTAAACACCATCTTGC 59.432 43.478 8.34 0.00 46.19 4.01
4364 4724 2.528743 GCCGTGCGATGATCAGTGG 61.529 63.158 0.09 0.00 0.00 4.00
4388 4754 2.203773 GGGTTTGGTGGTGGCCAT 60.204 61.111 9.72 0.00 38.48 4.40
4458 4824 0.305922 GCATACTACGCGTAGTCCGT 59.694 55.000 45.02 31.44 44.58 4.69
4475 4844 3.194116 GTCCGTTTAGGTAGGTCACATCA 59.806 47.826 0.00 0.00 41.99 3.07
4518 4891 3.008594 TCTGGTCTCTCTTCTCTCGTCTT 59.991 47.826 0.00 0.00 0.00 3.01
4604 4984 2.219325 CTGGGTGCTCTGGTCTCGTC 62.219 65.000 0.00 0.00 0.00 4.20
4605 4985 1.979693 GGGTGCTCTGGTCTCGTCT 60.980 63.158 0.00 0.00 0.00 4.18
4606 4986 1.509004 GGTGCTCTGGTCTCGTCTC 59.491 63.158 0.00 0.00 0.00 3.36
4607 4987 1.135731 GTGCTCTGGTCTCGTCTCG 59.864 63.158 0.00 0.00 0.00 4.04
4608 4988 1.302591 TGCTCTGGTCTCGTCTCGT 60.303 57.895 0.00 0.00 0.00 4.18
4690 5071 1.281899 GCTTGTCTCATGCTACGGAC 58.718 55.000 0.00 0.00 32.80 4.79
4697 5078 3.524606 ATGCTACGGACGGACGGG 61.525 66.667 6.00 0.13 38.39 5.28
4705 5086 4.675029 GACGGACGGGTGGTGGTG 62.675 72.222 0.00 0.00 0.00 4.17
4707 5088 4.980805 CGGACGGGTGGTGGTGTG 62.981 72.222 0.00 0.00 0.00 3.82
4708 5089 3.868985 GGACGGGTGGTGGTGTGT 61.869 66.667 0.00 0.00 0.00 3.72
4709 5090 2.590575 GACGGGTGGTGGTGTGTG 60.591 66.667 0.00 0.00 0.00 3.82
4710 5091 4.868116 ACGGGTGGTGGTGTGTGC 62.868 66.667 0.00 0.00 0.00 4.57
4711 5092 4.562425 CGGGTGGTGGTGTGTGCT 62.562 66.667 0.00 0.00 0.00 4.40
4712 5093 2.123897 GGGTGGTGGTGTGTGCTT 60.124 61.111 0.00 0.00 0.00 3.91
4715 5096 1.616159 GGTGGTGGTGTGTGCTTTAT 58.384 50.000 0.00 0.00 0.00 1.40
4717 5098 3.150767 GGTGGTGGTGTGTGCTTTATTA 58.849 45.455 0.00 0.00 0.00 0.98
4718 5099 3.057806 GGTGGTGGTGTGTGCTTTATTAC 60.058 47.826 0.00 0.00 0.00 1.89
4719 5100 3.818773 GTGGTGGTGTGTGCTTTATTACT 59.181 43.478 0.00 0.00 0.00 2.24
4720 5101 4.069304 TGGTGGTGTGTGCTTTATTACTC 58.931 43.478 0.00 0.00 0.00 2.59
4721 5102 3.124636 GGTGGTGTGTGCTTTATTACTCG 59.875 47.826 0.00 0.00 0.00 4.18
4722 5103 2.739913 TGGTGTGTGCTTTATTACTCGC 59.260 45.455 0.00 0.00 0.00 5.03
4723 5104 3.000727 GGTGTGTGCTTTATTACTCGCT 58.999 45.455 0.00 0.00 0.00 4.93
4724 5105 4.178540 GGTGTGTGCTTTATTACTCGCTA 58.821 43.478 0.00 0.00 0.00 4.26
4725 5106 4.628333 GGTGTGTGCTTTATTACTCGCTAA 59.372 41.667 0.00 0.00 0.00 3.09
4726 5107 5.445540 GGTGTGTGCTTTATTACTCGCTAAC 60.446 44.000 0.00 0.00 0.00 2.34
4783 5164 2.672961 TGGTCGTGGATGAAGCTTAG 57.327 50.000 0.00 0.00 0.00 2.18
4784 5165 1.207089 TGGTCGTGGATGAAGCTTAGG 59.793 52.381 0.00 0.00 0.00 2.69
4785 5166 1.291132 GTCGTGGATGAAGCTTAGGC 58.709 55.000 0.00 0.00 39.06 3.93
4792 5173 0.807667 ATGAAGCTTAGGCGACGCTG 60.808 55.000 20.77 8.83 44.37 5.18
4794 5175 3.665675 AAGCTTAGGCGACGCTGGG 62.666 63.158 20.77 8.79 44.37 4.45
4833 5214 4.696479 AGAGTGGGGAGCTACATTATTG 57.304 45.455 0.00 0.00 0.00 1.90
4837 5218 4.102681 AGTGGGGAGCTACATTATTGTACC 59.897 45.833 0.00 0.00 37.28 3.34
4839 5220 4.141574 TGGGGAGCTACATTATTGTACCAC 60.142 45.833 0.00 0.00 37.28 4.16
4840 5221 4.141574 GGGGAGCTACATTATTGTACCACA 60.142 45.833 0.00 0.00 37.28 4.17
4872 5771 6.094186 GGATCGCTTTTCCTGAATTTCTAGTT 59.906 38.462 0.00 0.00 0.00 2.24
4975 5876 5.425539 TGGTAATTGGTTTGGTTTTCAAGGA 59.574 36.000 0.00 0.00 36.62 3.36
5044 5956 1.964373 GACGGAAAAGCCTCGGCAA 60.964 57.895 11.02 0.00 44.88 4.52
5105 6017 1.354506 GCGATCAGCCTGCATGTTC 59.645 57.895 0.00 0.00 40.81 3.18
5156 9065 1.031571 CCCATGAATGGTGTCCCACG 61.032 60.000 8.49 0.00 45.65 4.94
5176 9085 1.294138 GGCCACGGCTACAAGTGTA 59.706 57.895 8.20 0.00 41.60 2.90
5262 9175 3.479203 TCGCTAGGCCCCATGTGG 61.479 66.667 0.00 0.00 0.00 4.17
5272 9185 2.046411 CCATGTGGCGGCACAGTA 60.046 61.111 41.33 24.53 38.59 2.74
5277 9190 1.804326 GTGGCGGCACAGTACTACG 60.804 63.158 34.40 0.00 0.00 3.51
5278 9191 2.270257 TGGCGGCACAGTACTACGT 61.270 57.895 7.97 0.00 0.00 3.57
5279 9192 0.959867 TGGCGGCACAGTACTACGTA 60.960 55.000 7.97 0.00 0.00 3.57
5280 9193 0.524180 GGCGGCACAGTACTACGTAC 60.524 60.000 3.07 0.00 39.10 3.67
5292 9205 3.777465 ACTACGTACAGTGGTATGCAG 57.223 47.619 5.36 0.00 43.04 4.41
5294 9207 1.263356 ACGTACAGTGGTATGCAGGT 58.737 50.000 0.00 0.00 39.63 4.00
5296 9209 1.797713 CGTACAGTGGTATGCAGGTCG 60.798 57.143 0.00 0.00 30.28 4.79
5297 9210 0.174845 TACAGTGGTATGCAGGTCGC 59.825 55.000 0.00 0.00 42.89 5.19
5299 9212 2.267642 GTGGTATGCAGGTCGCCA 59.732 61.111 0.00 0.00 41.33 5.69
5300 9213 2.106683 GTGGTATGCAGGTCGCCAC 61.107 63.158 10.61 10.61 42.03 5.01
5302 9215 2.890474 GTATGCAGGTCGCCACGG 60.890 66.667 0.00 0.00 41.33 4.94
5303 9216 4.830765 TATGCAGGTCGCCACGGC 62.831 66.667 0.00 0.00 41.33 5.68
5326 9239 3.062466 GCCCCAACCGCTCTTTCC 61.062 66.667 0.00 0.00 0.00 3.13
5340 9253 3.722147 CTCTTTCCCGAACATCGATCAT 58.278 45.455 0.00 0.00 43.74 2.45
5357 9270 0.322456 CATGCCCCTCTTTCGTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
5378 9291 2.167398 TACAGCGCCCTCACCAACTC 62.167 60.000 2.29 0.00 0.00 3.01
5379 9292 2.925170 AGCGCCCTCACCAACTCT 60.925 61.111 2.29 0.00 0.00 3.24
5380 9293 2.435059 GCGCCCTCACCAACTCTC 60.435 66.667 0.00 0.00 0.00 3.20
5381 9294 2.266055 CGCCCTCACCAACTCTCC 59.734 66.667 0.00 0.00 0.00 3.71
5382 9295 2.583441 CGCCCTCACCAACTCTCCA 61.583 63.158 0.00 0.00 0.00 3.86
5383 9296 1.761174 GCCCTCACCAACTCTCCAA 59.239 57.895 0.00 0.00 0.00 3.53
5384 9297 0.110486 GCCCTCACCAACTCTCCAAA 59.890 55.000 0.00 0.00 0.00 3.28
5385 9298 1.897560 CCCTCACCAACTCTCCAAAC 58.102 55.000 0.00 0.00 0.00 2.93
5399 9312 4.265893 TCTCCAAACTTTGTTGTACTGCA 58.734 39.130 0.88 0.00 0.00 4.41
5400 9313 4.095782 TCTCCAAACTTTGTTGTACTGCAC 59.904 41.667 0.88 0.00 0.00 4.57
5401 9314 4.013728 TCCAAACTTTGTTGTACTGCACT 58.986 39.130 0.88 0.00 0.00 4.40
5402 9315 5.186942 TCCAAACTTTGTTGTACTGCACTA 58.813 37.500 0.88 0.00 0.00 2.74
5403 9316 5.825679 TCCAAACTTTGTTGTACTGCACTAT 59.174 36.000 0.88 0.00 0.00 2.12
5404 9317 6.017440 TCCAAACTTTGTTGTACTGCACTATC 60.017 38.462 0.88 0.00 0.00 2.08
5405 9318 6.238621 CCAAACTTTGTTGTACTGCACTATCA 60.239 38.462 0.88 0.00 0.00 2.15
5406 9319 6.545504 AACTTTGTTGTACTGCACTATCAG 57.454 37.500 0.00 0.00 39.86 2.90
5408 9321 6.755206 ACTTTGTTGTACTGCACTATCAGTA 58.245 36.000 0.00 0.00 44.77 2.74
5423 9336 6.706270 CACTATCAGTACCAGTGTCACTTTTT 59.294 38.462 1.67 0.00 35.91 1.94
5424 9337 6.929606 ACTATCAGTACCAGTGTCACTTTTTC 59.070 38.462 1.67 0.00 0.00 2.29
5425 9338 5.092554 TCAGTACCAGTGTCACTTTTTCA 57.907 39.130 1.67 0.00 0.00 2.69
5426 9339 5.680619 TCAGTACCAGTGTCACTTTTTCAT 58.319 37.500 1.67 0.00 0.00 2.57
5427 9340 5.758296 TCAGTACCAGTGTCACTTTTTCATC 59.242 40.000 1.67 0.00 0.00 2.92
5428 9341 4.750098 AGTACCAGTGTCACTTTTTCATCG 59.250 41.667 1.67 0.00 0.00 3.84
5429 9342 2.878406 ACCAGTGTCACTTTTTCATCGG 59.122 45.455 1.67 1.42 0.00 4.18
5430 9343 2.878406 CCAGTGTCACTTTTTCATCGGT 59.122 45.455 1.67 0.00 0.00 4.69
5431 9344 3.058914 CCAGTGTCACTTTTTCATCGGTC 60.059 47.826 1.67 0.00 0.00 4.79
5434 9347 3.186613 GTGTCACTTTTTCATCGGTCCTC 59.813 47.826 0.00 0.00 0.00 3.71
5435 9348 3.181459 TGTCACTTTTTCATCGGTCCTCA 60.181 43.478 0.00 0.00 0.00 3.86
5437 9350 3.813166 TCACTTTTTCATCGGTCCTCAAC 59.187 43.478 0.00 0.00 0.00 3.18
5438 9351 3.815401 CACTTTTTCATCGGTCCTCAACT 59.185 43.478 0.00 0.00 0.00 3.16
5439 9352 3.815401 ACTTTTTCATCGGTCCTCAACTG 59.185 43.478 0.00 0.00 35.38 3.16
5441 9354 0.036388 TTCATCGGTCCTCAACTGGC 60.036 55.000 0.00 0.00 34.76 4.85
5443 9356 1.918293 ATCGGTCCTCAACTGGCCA 60.918 57.895 4.71 4.71 34.76 5.36
5445 9358 2.883828 CGGTCCTCAACTGGCCAGT 61.884 63.158 33.20 33.20 44.94 4.00
5449 9370 0.545309 TCCTCAACTGGCCAGTAGCT 60.545 55.000 37.89 20.93 41.58 3.32
5455 9376 3.263170 TCAACTGGCCAGTAGCTCATTTA 59.737 43.478 37.89 10.06 41.58 1.40
5463 9384 6.127647 TGGCCAGTAGCTCATTTATTTCTTTG 60.128 38.462 0.00 0.00 43.05 2.77
5473 9394 5.774690 TCATTTATTTCTTTGCCTGGTCAGT 59.225 36.000 0.00 0.00 0.00 3.41
5510 9431 0.528684 GCTGGTGAGCATCGGTCTAC 60.529 60.000 0.00 0.00 45.46 2.59
5511 9432 1.107114 CTGGTGAGCATCGGTCTACT 58.893 55.000 0.00 0.00 38.61 2.57
5512 9433 2.298610 CTGGTGAGCATCGGTCTACTA 58.701 52.381 0.00 0.00 38.61 1.82
5589 9510 4.942481 AGCTGCGTCGCGTGTCAA 62.942 61.111 13.38 0.00 34.40 3.18
5601 9522 3.253827 GTGTCAAAACGCGACGATC 57.746 52.632 15.93 0.00 36.11 3.69
5617 9538 2.223377 ACGATCGCTTGGTCAAAAGAAC 59.777 45.455 16.60 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.356442 TGCTACAGTGCTCGCGCA 62.356 61.111 8.75 0.00 45.60 6.09
8 9 3.843240 GTGCTACAGTGCTCGCGC 61.843 66.667 0.00 0.00 0.00 6.86
9 10 3.181967 GGTGCTACAGTGCTCGCG 61.182 66.667 0.00 0.00 0.00 5.87
10 11 2.815647 GGGTGCTACAGTGCTCGC 60.816 66.667 0.00 0.00 33.65 5.03
11 12 1.446792 CAGGGTGCTACAGTGCTCG 60.447 63.158 0.00 0.00 0.00 5.03
12 13 1.743252 GCAGGGTGCTACAGTGCTC 60.743 63.158 0.00 0.00 40.96 4.26
13 14 2.348998 GCAGGGTGCTACAGTGCT 59.651 61.111 0.00 0.00 40.96 4.40
14 15 2.747855 GGCAGGGTGCTACAGTGC 60.748 66.667 0.00 0.00 44.28 4.40
15 16 2.434884 CGGCAGGGTGCTACAGTG 60.435 66.667 0.00 0.00 44.28 3.66
16 17 2.923035 ACGGCAGGGTGCTACAGT 60.923 61.111 0.00 0.00 44.28 3.55
17 18 2.434884 CACGGCAGGGTGCTACAG 60.435 66.667 0.00 0.00 44.28 2.74
24 25 4.954970 CTTGTGGCACGGCAGGGT 62.955 66.667 13.77 0.00 0.00 4.34
35 36 1.079127 CCTCTACCGTGCCTTGTGG 60.079 63.158 0.00 0.00 0.00 4.17
36 37 0.108615 CTCCTCTACCGTGCCTTGTG 60.109 60.000 0.00 0.00 0.00 3.33
37 38 1.889530 GCTCCTCTACCGTGCCTTGT 61.890 60.000 0.00 0.00 0.00 3.16
38 39 1.153549 GCTCCTCTACCGTGCCTTG 60.154 63.158 0.00 0.00 0.00 3.61
39 40 2.359967 GGCTCCTCTACCGTGCCTT 61.360 63.158 0.00 0.00 40.36 4.35
40 41 2.760385 GGCTCCTCTACCGTGCCT 60.760 66.667 0.00 0.00 40.36 4.75
41 42 4.208686 CGGCTCCTCTACCGTGCC 62.209 72.222 0.00 0.00 44.46 5.01
46 47 2.783288 CGGAACCGGCTCCTCTACC 61.783 68.421 21.37 3.43 32.82 3.18
47 48 2.050934 ACGGAACCGGCTCCTCTAC 61.051 63.158 21.37 0.00 44.69 2.59
48 49 2.050350 CACGGAACCGGCTCCTCTA 61.050 63.158 21.37 0.00 44.69 2.43
49 50 3.382832 CACGGAACCGGCTCCTCT 61.383 66.667 21.37 3.78 44.69 3.69
50 51 3.379445 TCACGGAACCGGCTCCTC 61.379 66.667 21.37 3.69 44.69 3.71
51 52 3.692406 GTCACGGAACCGGCTCCT 61.692 66.667 21.37 6.21 44.69 3.69
52 53 3.644399 GAGTCACGGAACCGGCTCC 62.644 68.421 14.30 14.30 44.69 4.70
53 54 2.126031 GAGTCACGGAACCGGCTC 60.126 66.667 17.44 15.72 44.69 4.70
54 55 2.207924 AAGAGTCACGGAACCGGCT 61.208 57.895 17.44 11.60 44.69 5.52
55 56 2.027625 CAAGAGTCACGGAACCGGC 61.028 63.158 17.44 7.29 44.69 6.13
56 57 2.027625 GCAAGAGTCACGGAACCGG 61.028 63.158 17.44 0.00 44.69 5.28
57 58 2.372690 CGCAAGAGTCACGGAACCG 61.373 63.158 11.83 11.83 43.16 4.44
58 59 3.550656 CGCAAGAGTCACGGAACC 58.449 61.111 0.00 0.00 43.02 3.62
63 64 1.455786 CTTGTAACCGCAAGAGTCACG 59.544 52.381 0.00 0.00 46.34 4.35
64 65 1.194772 GCTTGTAACCGCAAGAGTCAC 59.805 52.381 9.65 0.00 46.34 3.67
65 66 1.508632 GCTTGTAACCGCAAGAGTCA 58.491 50.000 9.65 0.00 46.34 3.41
66 67 0.796927 GGCTTGTAACCGCAAGAGTC 59.203 55.000 9.65 0.00 46.34 3.36
67 68 0.605589 GGGCTTGTAACCGCAAGAGT 60.606 55.000 9.65 0.00 46.34 3.24
83 84 4.039852 TCAAAATTACTCCAAAACCTGGGC 59.960 41.667 0.00 0.00 46.44 5.36
87 88 7.432148 AAGGTTCAAAATTACTCCAAAACCT 57.568 32.000 0.00 0.00 45.32 3.50
89 90 9.157104 TGAAAAGGTTCAAAATTACTCCAAAAC 57.843 29.630 0.00 0.00 40.87 2.43
106 107 2.276201 GGTGCGCTTTTTGAAAAGGTT 58.724 42.857 9.73 0.00 44.24 3.50
107 108 1.801025 CGGTGCGCTTTTTGAAAAGGT 60.801 47.619 9.73 0.00 44.24 3.50
108 109 0.852136 CGGTGCGCTTTTTGAAAAGG 59.148 50.000 9.73 4.66 44.24 3.11
122 123 1.706287 GAATCTTTCTCCGGCGGTGC 61.706 60.000 27.32 4.77 0.00 5.01
137 138 2.095919 CGTTTGAAACACGGGGAGAATC 60.096 50.000 8.93 0.00 33.86 2.52
138 139 1.877443 CGTTTGAAACACGGGGAGAAT 59.123 47.619 8.93 0.00 33.86 2.40
139 140 1.301423 CGTTTGAAACACGGGGAGAA 58.699 50.000 8.93 0.00 33.86 2.87
141 142 0.306533 CACGTTTGAAACACGGGGAG 59.693 55.000 8.93 0.00 42.14 4.30
142 143 2.395651 CACGTTTGAAACACGGGGA 58.604 52.632 8.93 0.00 42.14 4.81
162 163 8.398665 CCATTTTTATTTTCTTACTCCGGAGAG 58.601 37.037 37.69 24.59 46.36 3.20
180 187 7.830940 CATAAATGCAGTGCTTCCATTTTTA 57.169 32.000 17.60 5.00 39.25 1.52
197 204 4.493547 ACCACCACGATTTTGCATAAATG 58.506 39.130 10.33 2.05 0.00 2.32
199 206 3.823873 AGACCACCACGATTTTGCATAAA 59.176 39.130 0.00 0.00 0.00 1.40
200 207 3.417101 AGACCACCACGATTTTGCATAA 58.583 40.909 0.00 0.00 0.00 1.90
201 208 3.066291 AGACCACCACGATTTTGCATA 57.934 42.857 0.00 0.00 0.00 3.14
204 211 2.393764 CAAAGACCACCACGATTTTGC 58.606 47.619 0.00 0.00 0.00 3.68
205 212 2.034558 AGCAAAGACCACCACGATTTTG 59.965 45.455 0.00 0.00 0.00 2.44
209 216 1.623811 ACTAGCAAAGACCACCACGAT 59.376 47.619 0.00 0.00 0.00 3.73
210 217 1.045407 ACTAGCAAAGACCACCACGA 58.955 50.000 0.00 0.00 0.00 4.35
211 218 1.148310 CACTAGCAAAGACCACCACG 58.852 55.000 0.00 0.00 0.00 4.94
212 219 2.224305 ACTCACTAGCAAAGACCACCAC 60.224 50.000 0.00 0.00 0.00 4.16
213 220 2.037251 GACTCACTAGCAAAGACCACCA 59.963 50.000 0.00 0.00 0.00 4.17
214 221 2.689646 GACTCACTAGCAAAGACCACC 58.310 52.381 0.00 0.00 0.00 4.61
215 222 2.329379 CGACTCACTAGCAAAGACCAC 58.671 52.381 0.00 0.00 0.00 4.16
216 223 1.336887 GCGACTCACTAGCAAAGACCA 60.337 52.381 0.00 0.00 0.00 4.02
217 224 1.067495 AGCGACTCACTAGCAAAGACC 60.067 52.381 0.00 0.00 0.00 3.85
218 225 2.355717 AGCGACTCACTAGCAAAGAC 57.644 50.000 0.00 0.00 0.00 3.01
219 226 2.352814 GGAAGCGACTCACTAGCAAAGA 60.353 50.000 0.00 0.00 0.00 2.52
220 227 1.996191 GGAAGCGACTCACTAGCAAAG 59.004 52.381 0.00 0.00 0.00 2.77
243 250 5.465532 TGCAGATTTATTGAGGTGCAAAA 57.534 34.783 0.00 0.00 40.48 2.44
304 311 2.513897 GGGAATCTTCACCCGCCG 60.514 66.667 0.00 0.00 36.56 6.46
320 327 1.457346 GAGTGGGTTGCAGATTCAGG 58.543 55.000 0.00 0.00 0.00 3.86
373 381 6.084925 GCTGCAATTTAATCATGCTAGCTAG 58.915 40.000 16.84 16.84 40.66 3.42
374 382 5.532032 TGCTGCAATTTAATCATGCTAGCTA 59.468 36.000 17.23 2.58 41.00 3.32
375 383 4.340097 TGCTGCAATTTAATCATGCTAGCT 59.660 37.500 17.23 0.00 41.00 3.32
376 384 4.613944 TGCTGCAATTTAATCATGCTAGC 58.386 39.130 8.10 8.10 40.90 3.42
377 385 7.709269 ATTTGCTGCAATTTAATCATGCTAG 57.291 32.000 16.77 0.00 40.66 3.42
432 440 1.595794 TCGACGTTTTGCTTTGGAGAC 59.404 47.619 0.00 0.00 0.00 3.36
504 528 3.252701 GTGCTGCTGGGAGATTGATTATG 59.747 47.826 0.00 0.00 0.00 1.90
577 605 2.252714 GGGGGTTGTTGCAGGAAAATA 58.747 47.619 0.00 0.00 0.00 1.40
578 606 1.055849 GGGGGTTGTTGCAGGAAAAT 58.944 50.000 0.00 0.00 0.00 1.82
618 652 4.735132 TCAGCTGTACGGTGCGGC 62.735 66.667 20.54 20.54 40.87 6.53
667 701 2.494918 CTCCCACGACGATGACCC 59.505 66.667 0.00 0.00 0.00 4.46
710 744 2.585247 GGGTAGGTGCGCGATGTC 60.585 66.667 12.10 0.00 0.00 3.06
727 761 3.208884 GATCGATCGACCGGGGGTG 62.209 68.421 22.06 0.00 35.25 4.61
784 820 2.093890 TCGCGGGCTCGGATAATAATA 58.906 47.619 8.71 0.00 36.79 0.98
785 821 0.892755 TCGCGGGCTCGGATAATAAT 59.107 50.000 8.71 0.00 36.79 1.28
786 822 0.675083 TTCGCGGGCTCGGATAATAA 59.325 50.000 8.71 0.00 36.79 1.40
827 863 4.175787 AGATATGTTTATCTCCGCGGAC 57.824 45.455 27.28 15.12 40.46 4.79
920 964 4.943822 GCAGGAGCTACAGGGAAC 57.056 61.111 0.00 0.00 37.91 3.62
1340 1438 8.897872 TTAAAAGAAAACACTAGGACGAATCT 57.102 30.769 0.00 0.00 0.00 2.40
1477 1585 1.006519 CCCAACTCTCTCTCCCTCTCA 59.993 57.143 0.00 0.00 0.00 3.27
1479 1587 1.388174 TCCCAACTCTCTCTCCCTCT 58.612 55.000 0.00 0.00 0.00 3.69
1480 1588 2.235155 GTTTCCCAACTCTCTCTCCCTC 59.765 54.545 0.00 0.00 0.00 4.30
1481 1589 2.261729 GTTTCCCAACTCTCTCTCCCT 58.738 52.381 0.00 0.00 0.00 4.20
1484 1592 3.753294 TGTGTTTCCCAACTCTCTCTC 57.247 47.619 0.00 0.00 33.58 3.20
1501 1636 3.002102 GCCATGCCAAAAACCTATTGTG 58.998 45.455 0.00 0.00 0.00 3.33
1505 1640 1.207811 GCTGCCATGCCAAAAACCTAT 59.792 47.619 0.00 0.00 0.00 2.57
1611 1753 4.317671 GTACTGCTGGTACGAATATGGT 57.682 45.455 0.00 0.00 40.90 3.55
1651 1794 2.107953 GCCACCGCAGAGATCCTC 59.892 66.667 0.00 0.00 34.03 3.71
1730 1875 1.138568 ATTCATGGAGGAGGAGCAGG 58.861 55.000 0.00 0.00 0.00 4.85
1750 1895 2.540383 TCACAAGCTAGAGTGTGGGAT 58.460 47.619 20.08 0.00 44.29 3.85
1759 1904 2.030185 GTCTCGGTGTTCACAAGCTAGA 60.030 50.000 5.32 0.00 0.00 2.43
1761 1906 1.000506 GGTCTCGGTGTTCACAAGCTA 59.999 52.381 5.32 0.00 0.00 3.32
1767 1912 1.336609 GGTACTGGTCTCGGTGTTCAC 60.337 57.143 0.00 0.00 33.86 3.18
1768 1913 0.963962 GGTACTGGTCTCGGTGTTCA 59.036 55.000 0.00 0.00 33.86 3.18
1771 1916 0.252103 ATGGGTACTGGTCTCGGTGT 60.252 55.000 0.00 0.00 33.86 4.16
1779 1938 5.253330 CACAGTGAAAATATGGGTACTGGT 58.747 41.667 0.00 0.00 39.71 4.00
1783 1942 3.380320 GGGCACAGTGAAAATATGGGTAC 59.620 47.826 4.15 0.00 0.00 3.34
1828 1988 0.160392 CTCATGATCGCGCATCGTTC 59.840 55.000 8.75 0.00 39.67 3.95
1831 1991 0.578683 AAACTCATGATCGCGCATCG 59.421 50.000 8.75 0.00 40.15 3.84
1835 1995 0.447801 AACCAAACTCATGATCGCGC 59.552 50.000 0.00 0.00 0.00 6.86
1840 2000 4.520492 GTCCACAGAAACCAAACTCATGAT 59.480 41.667 0.00 0.00 0.00 2.45
1851 2012 2.033424 GCAGAAACAGTCCACAGAAACC 59.967 50.000 0.00 0.00 0.00 3.27
1862 2023 5.186198 GGTGAATATACCAGCAGAAACAGT 58.814 41.667 0.00 0.00 40.54 3.55
1965 2126 1.420138 GGCCGGGGAATCTTTATCTGA 59.580 52.381 2.18 0.00 0.00 3.27
2007 2173 4.161565 AGAAAAGTGATAGGACACGGCATA 59.838 41.667 0.00 0.00 44.35 3.14
2008 2174 3.055094 AGAAAAGTGATAGGACACGGCAT 60.055 43.478 0.00 0.00 44.35 4.40
2087 2265 6.724263 CAACAGTAAATTCACACAGTTAGCA 58.276 36.000 0.00 0.00 0.00 3.49
2112 2293 3.664495 CTGCACCAACCAGAGCAG 58.336 61.111 0.00 0.00 46.98 4.24
2255 2436 5.046591 TCACAGAGGTAAATGGTTCTGTAGG 60.047 44.000 5.75 0.00 46.14 3.18
2265 2446 4.067896 ACTGCACTTCACAGAGGTAAATG 58.932 43.478 0.00 0.00 38.55 2.32
2290 2471 6.800072 TGGGTCCAAAGTAACAAAAAGATT 57.200 33.333 0.00 0.00 0.00 2.40
2299 2480 3.503800 ACTCCTTGGGTCCAAAGTAAC 57.496 47.619 5.23 0.00 35.33 2.50
2300 2481 5.853572 ATTACTCCTTGGGTCCAAAGTAA 57.146 39.130 20.37 20.37 40.46 2.24
2470 2653 0.460987 CACTGCAGCCTACAGCCTAC 60.461 60.000 15.27 0.00 45.47 3.18
2471 2654 0.904865 ACACTGCAGCCTACAGCCTA 60.905 55.000 15.27 0.00 45.47 3.93
2472 2655 0.904865 TACACTGCAGCCTACAGCCT 60.905 55.000 15.27 0.00 45.47 4.58
2473 2656 0.460987 CTACACTGCAGCCTACAGCC 60.461 60.000 15.27 0.00 45.47 4.85
2474 2657 0.247736 ACTACACTGCAGCCTACAGC 59.752 55.000 15.27 0.00 38.79 4.40
2475 2658 2.755655 AGTACTACACTGCAGCCTACAG 59.244 50.000 15.27 6.74 41.08 2.74
2476 2659 2.753452 GAGTACTACACTGCAGCCTACA 59.247 50.000 15.27 0.00 37.72 2.74
2484 2667 0.739561 CGGAGGGAGTACTACACTGC 59.260 60.000 7.57 6.26 44.49 4.40
2485 2668 2.015587 GACGGAGGGAGTACTACACTG 58.984 57.143 7.57 8.01 37.72 3.66
2495 2678 2.389715 AGTAATTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
2497 2680 2.236395 ACAAGTAATTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
2498 2681 3.522553 GACAAGTAATTCTGGACGGAGG 58.477 50.000 0.00 0.00 0.00 4.30
2499 2682 3.119602 TCGACAAGTAATTCTGGACGGAG 60.120 47.826 0.00 0.00 36.30 4.63
2501 2684 3.226346 TCGACAAGTAATTCTGGACGG 57.774 47.619 0.00 0.00 36.30 4.79
2502 2685 4.482386 TCTTCGACAAGTAATTCTGGACG 58.518 43.478 0.00 0.00 36.80 4.79
2503 2686 6.780706 TTTCTTCGACAAGTAATTCTGGAC 57.219 37.500 0.00 0.00 0.00 4.02
2504 2687 7.596749 GATTTCTTCGACAAGTAATTCTGGA 57.403 36.000 0.00 0.00 31.62 3.86
2532 2715 9.886132 ATGTTAGTTCTAGATACATCCGTTTTT 57.114 29.630 0.00 0.00 0.00 1.94
2536 2719 9.298250 ACATATGTTAGTTCTAGATACATCCGT 57.702 33.333 1.41 8.59 32.23 4.69
2537 2720 9.776158 GACATATGTTAGTTCTAGATACATCCG 57.224 37.037 10.30 8.17 32.23 4.18
2567 2750 9.832445 GAAGTACTTATTGGAGAAATGGATGTA 57.168 33.333 8.42 0.00 0.00 2.29
2568 2751 7.775561 GGAAGTACTTATTGGAGAAATGGATGT 59.224 37.037 8.42 0.00 0.00 3.06
2569 2752 7.041780 CGGAAGTACTTATTGGAGAAATGGATG 60.042 40.741 8.42 0.00 0.00 3.51
2570 2753 6.992715 CGGAAGTACTTATTGGAGAAATGGAT 59.007 38.462 8.42 0.00 0.00 3.41
2571 2754 6.346096 CGGAAGTACTTATTGGAGAAATGGA 58.654 40.000 8.42 0.00 0.00 3.41
2572 2755 5.527582 CCGGAAGTACTTATTGGAGAAATGG 59.472 44.000 8.42 0.00 0.00 3.16
2573 2756 6.258068 GTCCGGAAGTACTTATTGGAGAAATG 59.742 42.308 18.38 0.00 0.00 2.32
2574 2757 6.346896 GTCCGGAAGTACTTATTGGAGAAAT 58.653 40.000 18.38 0.00 0.00 2.17
2575 2758 5.622914 CGTCCGGAAGTACTTATTGGAGAAA 60.623 44.000 18.38 1.03 0.00 2.52
2576 2759 4.142315 CGTCCGGAAGTACTTATTGGAGAA 60.142 45.833 18.38 1.31 0.00 2.87
2577 2760 3.379372 CGTCCGGAAGTACTTATTGGAGA 59.621 47.826 18.38 5.15 0.00 3.71
2578 2761 3.490419 CCGTCCGGAAGTACTTATTGGAG 60.490 52.174 16.46 13.58 37.50 3.86
2579 2762 2.428171 CCGTCCGGAAGTACTTATTGGA 59.572 50.000 16.46 12.81 37.50 3.53
2580 2763 2.428171 TCCGTCCGGAAGTACTTATTGG 59.572 50.000 16.46 10.66 42.05 3.16
2581 2764 3.490419 CCTCCGTCCGGAAGTACTTATTG 60.490 52.174 16.46 1.21 44.66 1.90
2582 2765 2.692041 CCTCCGTCCGGAAGTACTTATT 59.308 50.000 16.46 0.00 44.66 1.40
2583 2766 2.305009 CCTCCGTCCGGAAGTACTTAT 58.695 52.381 16.46 0.00 44.66 1.73
2584 2767 1.683011 CCCTCCGTCCGGAAGTACTTA 60.683 57.143 16.46 0.00 44.66 2.24
2585 2768 0.969409 CCCTCCGTCCGGAAGTACTT 60.969 60.000 16.46 8.13 44.66 2.24
2586 2769 1.379576 CCCTCCGTCCGGAAGTACT 60.380 63.158 16.46 0.00 44.66 2.73
2587 2770 1.379044 TCCCTCCGTCCGGAAGTAC 60.379 63.158 16.46 0.00 44.66 2.73
2588 2771 1.077212 CTCCCTCCGTCCGGAAGTA 60.077 63.158 16.46 0.00 44.66 2.24
2589 2772 2.362632 CTCCCTCCGTCCGGAAGT 60.363 66.667 16.46 0.00 44.66 3.01
2590 2773 1.946475 GAACTCCCTCCGTCCGGAAG 61.946 65.000 5.23 8.49 44.66 3.46
2591 2774 1.980772 GAACTCCCTCCGTCCGGAA 60.981 63.158 5.23 0.00 44.66 4.30
2592 2775 2.362120 GAACTCCCTCCGTCCGGA 60.362 66.667 0.00 0.00 42.90 5.14
2593 2776 2.362632 AGAACTCCCTCCGTCCGG 60.363 66.667 0.00 0.00 0.00 5.14
2594 2777 2.711922 CCAGAACTCCCTCCGTCCG 61.712 68.421 0.00 0.00 0.00 4.79
2595 2778 1.605971 GACCAGAACTCCCTCCGTCC 61.606 65.000 0.00 0.00 0.00 4.79
2596 2779 0.898789 TGACCAGAACTCCCTCCGTC 60.899 60.000 0.00 0.00 0.00 4.79
2597 2780 0.471211 TTGACCAGAACTCCCTCCGT 60.471 55.000 0.00 0.00 0.00 4.69
2598 2781 0.037232 GTTGACCAGAACTCCCTCCG 60.037 60.000 0.00 0.00 0.00 4.63
2599 2782 1.353091 AGTTGACCAGAACTCCCTCC 58.647 55.000 0.00 0.00 29.85 4.30
2600 2783 2.094649 CGTAGTTGACCAGAACTCCCTC 60.095 54.545 0.00 0.00 37.38 4.30
2601 2784 1.893801 CGTAGTTGACCAGAACTCCCT 59.106 52.381 0.00 0.00 37.38 4.20
2602 2785 1.891150 TCGTAGTTGACCAGAACTCCC 59.109 52.381 0.00 0.00 37.38 4.30
2603 2786 2.295349 TGTCGTAGTTGACCAGAACTCC 59.705 50.000 0.00 0.00 37.38 3.85
2604 2787 3.252701 TCTGTCGTAGTTGACCAGAACTC 59.747 47.826 0.00 0.00 37.38 3.01
2605 2788 3.004524 GTCTGTCGTAGTTGACCAGAACT 59.995 47.826 0.00 0.00 39.54 3.01
2606 2789 3.004524 AGTCTGTCGTAGTTGACCAGAAC 59.995 47.826 0.00 0.00 38.11 3.01
2649 2832 8.420222 ACATCAGAGGATAGTTAAGTTGATCTG 58.580 37.037 0.00 0.00 34.39 2.90
2662 2845 9.993454 TCATTCAAATTCTACATCAGAGGATAG 57.007 33.333 0.00 0.00 33.83 2.08
2675 2858 7.337689 CACTGGACCAAGATCATTCAAATTCTA 59.662 37.037 0.00 0.00 0.00 2.10
2690 2873 3.409026 AGCTAAGAACACTGGACCAAG 57.591 47.619 0.00 0.00 0.00 3.61
2701 2884 8.467963 AAATAGGAGTAGGAGTAGCTAAGAAC 57.532 38.462 0.00 0.00 0.00 3.01
2733 2917 5.016831 GGTCCTTGACTGGGATACAATTTT 58.983 41.667 0.00 0.00 35.15 1.82
2836 3021 4.570926 TGACCATTGGATTCCCTCTCTAT 58.429 43.478 10.37 0.00 0.00 1.98
2865 3050 7.169982 GGATCTTGATTACTAAGGATGTTGACG 59.830 40.741 0.00 0.00 0.00 4.35
2963 3148 4.188247 AGCAGCGTTGTATCTCTTGTTA 57.812 40.909 0.00 0.00 0.00 2.41
2984 3169 6.313519 ACATCAGGGTTGCTAAAGATCTTA 57.686 37.500 8.75 0.00 0.00 2.10
3114 3461 4.320667 TCGCAAAACAATACGATCAGTG 57.679 40.909 0.00 0.00 0.00 3.66
3124 3471 4.272504 CCGTACCTATCATCGCAAAACAAT 59.727 41.667 0.00 0.00 0.00 2.71
3259 3607 3.934457 AATTAAGGCCAAACGTCCAAG 57.066 42.857 5.01 0.00 0.00 3.61
3274 3622 7.867305 TGAGTGTACACTTCACCAAAATTAA 57.133 32.000 28.49 0.00 42.66 1.40
3297 3645 4.082787 ACACACAAACAGAAGAGGTTGTTG 60.083 41.667 0.00 0.00 37.57 3.33
3299 3647 3.686016 ACACACAAACAGAAGAGGTTGT 58.314 40.909 0.00 0.00 0.00 3.32
3303 3651 3.181454 ACCCTACACACAAACAGAAGAGG 60.181 47.826 0.00 0.00 0.00 3.69
3311 3659 4.347360 AGTAAGGACCCTACACACAAAC 57.653 45.455 3.08 0.00 0.00 2.93
3313 3661 4.525487 CAGTAGTAAGGACCCTACACACAA 59.475 45.833 3.08 0.00 36.77 3.33
3343 3691 1.853319 GAACGACTTGTCAGCACCG 59.147 57.895 0.00 0.00 0.00 4.94
3361 3709 0.108804 AGTCAACTATGTCACGCCCG 60.109 55.000 0.00 0.00 0.00 6.13
3492 3840 6.151985 TCAGAGAGACAGTAATTCTCCAAGAC 59.848 42.308 5.86 0.00 40.49 3.01
3532 3880 5.205056 ACTCCCACTGAAAACCAAACATAA 58.795 37.500 0.00 0.00 0.00 1.90
3721 4069 3.169099 TCCTCTGAAGAAAGGGAGAGTG 58.831 50.000 0.00 0.00 31.68 3.51
3747 4095 1.586564 GACAACTCCGGCGATCTCG 60.587 63.158 9.30 0.00 43.27 4.04
4040 4388 3.112709 GTCTCGTGCTTGCCGGTC 61.113 66.667 1.90 0.00 0.00 4.79
4095 4446 3.196469 CAGATGGTTCAGAGTAGAAGGCA 59.804 47.826 0.00 0.00 0.00 4.75
4104 4455 4.006319 GGAAAGGTTCAGATGGTTCAGAG 58.994 47.826 0.00 0.00 0.00 3.35
4111 4463 4.372656 GAGATACGGAAAGGTTCAGATGG 58.627 47.826 0.00 0.00 0.00 3.51
4167 4527 3.573772 TTCGCGACACCCTGCAGAG 62.574 63.158 17.39 3.79 0.00 3.35
4364 4724 1.382009 ACCACCAAACCCAACCCAC 60.382 57.895 0.00 0.00 0.00 4.61
4388 4754 4.662278 AGAATTTCGTCCAAATCCTCCAA 58.338 39.130 0.00 0.00 33.16 3.53
4458 4824 4.201980 CGACGATGATGTGACCTACCTAAA 60.202 45.833 0.00 0.00 0.00 1.85
4475 4844 1.030488 ACCCTGATGACGACGACGAT 61.030 55.000 15.32 0.00 42.66 3.73
4518 4891 3.747521 CTTGCCACCCACCACCCAA 62.748 63.158 0.00 0.00 0.00 4.12
4555 4934 7.628580 GCAAGGGAAAACAATCAATAGTAGTCC 60.629 40.741 0.00 0.00 0.00 3.85
4604 4984 8.315391 ACCATATCAATTGATGATTACACGAG 57.685 34.615 27.59 9.12 46.85 4.18
4605 4985 9.771534 TTACCATATCAATTGATGATTACACGA 57.228 29.630 27.59 7.60 46.85 4.35
4690 5071 4.980805 CACACCACCACCCGTCCG 62.981 72.222 0.00 0.00 0.00 4.79
4697 5078 3.818773 AGTAATAAAGCACACACCACCAC 59.181 43.478 0.00 0.00 0.00 4.16
4702 5083 3.000727 AGCGAGTAATAAAGCACACACC 58.999 45.455 0.00 0.00 0.00 4.16
4703 5084 5.548250 GTTAGCGAGTAATAAAGCACACAC 58.452 41.667 0.00 0.00 0.00 3.82
4705 5086 4.560035 TCGTTAGCGAGTAATAAAGCACAC 59.440 41.667 0.00 0.00 42.81 3.82
4706 5087 4.735985 TCGTTAGCGAGTAATAAAGCACA 58.264 39.130 0.00 0.00 42.81 4.57
4719 5100 9.808013 CTTTACACAAAGTTGCATCGTTAGCGA 62.808 40.741 3.55 3.55 42.45 4.93
4720 5101 2.233355 CACAAAGTTGCATCGTTAGCG 58.767 47.619 0.00 0.00 39.92 4.26
4721 5102 3.268013 ACACAAAGTTGCATCGTTAGC 57.732 42.857 0.00 0.00 0.00 3.09
4722 5103 5.339611 GCTTTACACAAAGTTGCATCGTTAG 59.660 40.000 0.00 0.00 42.71 2.34
4723 5104 5.209240 GCTTTACACAAAGTTGCATCGTTA 58.791 37.500 0.00 0.00 42.71 3.18
4724 5105 4.041723 GCTTTACACAAAGTTGCATCGTT 58.958 39.130 0.00 0.00 42.71 3.85
4725 5106 3.628017 GCTTTACACAAAGTTGCATCGT 58.372 40.909 0.00 0.00 42.71 3.73
4726 5107 2.651703 CGCTTTACACAAAGTTGCATCG 59.348 45.455 0.00 0.00 42.71 3.84
4783 5164 4.849310 TAATGGCCCAGCGTCGCC 62.849 66.667 14.86 4.24 45.92 5.54
4784 5165 0.882927 TAATAATGGCCCAGCGTCGC 60.883 55.000 9.80 9.80 0.00 5.19
4785 5166 1.148310 CTAATAATGGCCCAGCGTCG 58.852 55.000 0.00 0.00 0.00 5.12
4792 5173 0.821711 TGGCGCACTAATAATGGCCC 60.822 55.000 10.83 0.00 39.78 5.80
4794 5175 1.946768 TCTTGGCGCACTAATAATGGC 59.053 47.619 10.83 0.00 0.00 4.40
4833 5214 1.651987 CGATCCCATGTGTGTGGTAC 58.348 55.000 0.00 0.00 37.57 3.34
4837 5218 1.167851 AAAGCGATCCCATGTGTGTG 58.832 50.000 0.00 0.00 0.00 3.82
4839 5220 1.133025 GGAAAAGCGATCCCATGTGTG 59.867 52.381 0.00 0.00 0.00 3.82
4840 5221 1.004745 AGGAAAAGCGATCCCATGTGT 59.995 47.619 2.36 0.00 37.71 3.72
4927 5828 9.667107 CCATCAAACTGTCCTTTTCTTATACTA 57.333 33.333 0.00 0.00 0.00 1.82
4928 5829 8.164070 ACCATCAAACTGTCCTTTTCTTATACT 58.836 33.333 0.00 0.00 0.00 2.12
4929 5830 8.336801 ACCATCAAACTGTCCTTTTCTTATAC 57.663 34.615 0.00 0.00 0.00 1.47
4940 5841 5.722021 AACCAATTACCATCAAACTGTCC 57.278 39.130 0.00 0.00 0.00 4.02
4975 5876 5.701224 CTCTCTTTCCCTATCACTCTACCT 58.299 45.833 0.00 0.00 0.00 3.08
5092 6004 1.022735 GATGAGGAACATGCAGGCTG 58.977 55.000 10.94 10.94 39.56 4.85
5101 6013 1.548719 CACTGTACCGGATGAGGAACA 59.451 52.381 9.46 0.00 34.73 3.18
5105 6017 0.460284 GTGCACTGTACCGGATGAGG 60.460 60.000 9.46 0.00 37.30 3.86
5156 9065 4.029809 ACTTGTAGCCGTGGCCCC 62.030 66.667 7.39 0.00 43.17 5.80
5162 9071 4.096081 GTCTATGTCTACACTTGTAGCCGT 59.904 45.833 11.00 4.71 45.69 5.68
5176 9085 3.100671 GGGGAGTCACAAGTCTATGTCT 58.899 50.000 0.00 0.00 0.00 3.41
5277 9190 1.922570 CGACCTGCATACCACTGTAC 58.077 55.000 0.00 0.00 0.00 2.90
5278 9191 0.174845 GCGACCTGCATACCACTGTA 59.825 55.000 0.00 0.00 45.45 2.74
5279 9192 1.079127 GCGACCTGCATACCACTGT 60.079 57.895 0.00 0.00 45.45 3.55
5280 9193 3.799753 GCGACCTGCATACCACTG 58.200 61.111 0.00 0.00 45.45 3.66
5307 9220 2.597510 AAAGAGCGGTTGGGGCAC 60.598 61.111 0.00 0.00 0.00 5.01
5308 9221 2.282180 GAAAGAGCGGTTGGGGCA 60.282 61.111 0.00 0.00 0.00 5.36
5309 9222 3.062466 GGAAAGAGCGGTTGGGGC 61.062 66.667 0.00 0.00 0.00 5.80
5326 9239 1.230635 GGGGCATGATCGATGTTCGG 61.231 60.000 0.54 0.00 40.88 4.30
5340 9253 1.374947 CTTGGACGAAAGAGGGGCA 59.625 57.895 0.00 0.00 0.00 5.36
5357 9270 2.214216 TTGGTGAGGGCGCTGTACT 61.214 57.895 8.56 0.00 0.00 2.73
5378 9291 4.096382 AGTGCAGTACAACAAAGTTTGGAG 59.904 41.667 19.45 13.09 34.12 3.86
5379 9292 4.013728 AGTGCAGTACAACAAAGTTTGGA 58.986 39.130 19.45 0.00 34.12 3.53
5380 9293 4.370364 AGTGCAGTACAACAAAGTTTGG 57.630 40.909 19.45 5.52 34.12 3.28
5381 9294 6.724263 TGATAGTGCAGTACAACAAAGTTTG 58.276 36.000 14.13 14.13 0.00 2.93
5382 9295 6.542370 ACTGATAGTGCAGTACAACAAAGTTT 59.458 34.615 2.64 0.00 46.67 2.66
5383 9296 6.055588 ACTGATAGTGCAGTACAACAAAGTT 58.944 36.000 2.64 0.00 46.67 2.66
5384 9297 5.611374 ACTGATAGTGCAGTACAACAAAGT 58.389 37.500 2.64 0.00 46.67 2.66
5399 9312 6.420913 AAAAGTGACACTGGTACTGATAGT 57.579 37.500 9.33 0.00 0.00 2.12
5400 9313 6.929049 TGAAAAAGTGACACTGGTACTGATAG 59.071 38.462 9.33 0.00 0.00 2.08
5401 9314 6.822442 TGAAAAAGTGACACTGGTACTGATA 58.178 36.000 9.33 0.00 0.00 2.15
5402 9315 5.680619 TGAAAAAGTGACACTGGTACTGAT 58.319 37.500 9.33 0.00 0.00 2.90
5403 9316 5.092554 TGAAAAAGTGACACTGGTACTGA 57.907 39.130 9.33 0.00 0.00 3.41
5404 9317 5.333339 CGATGAAAAAGTGACACTGGTACTG 60.333 44.000 9.33 0.00 0.00 2.74
5405 9318 4.750098 CGATGAAAAAGTGACACTGGTACT 59.250 41.667 9.33 0.00 0.00 2.73
5406 9319 4.084013 CCGATGAAAAAGTGACACTGGTAC 60.084 45.833 9.33 2.83 0.00 3.34
5407 9320 4.062293 CCGATGAAAAAGTGACACTGGTA 58.938 43.478 9.33 0.00 0.00 3.25
5408 9321 2.878406 CCGATGAAAAAGTGACACTGGT 59.122 45.455 9.33 0.00 0.00 4.00
5409 9322 2.878406 ACCGATGAAAAAGTGACACTGG 59.122 45.455 9.33 5.84 0.00 4.00
5410 9323 3.058914 GGACCGATGAAAAAGTGACACTG 60.059 47.826 9.33 0.00 0.00 3.66
5423 9336 1.596934 GCCAGTTGAGGACCGATGA 59.403 57.895 0.00 0.00 0.00 2.92
5424 9337 1.450312 GGCCAGTTGAGGACCGATG 60.450 63.158 0.00 0.00 0.00 3.84
5425 9338 1.903877 CTGGCCAGTTGAGGACCGAT 61.904 60.000 25.53 0.00 35.02 4.18
5426 9339 2.525629 TGGCCAGTTGAGGACCGA 60.526 61.111 0.00 0.00 35.02 4.69
5427 9340 1.541310 TACTGGCCAGTTGAGGACCG 61.541 60.000 41.69 11.94 42.54 4.79
5428 9341 0.250513 CTACTGGCCAGTTGAGGACC 59.749 60.000 41.69 0.00 42.54 4.46
5429 9342 0.391793 GCTACTGGCCAGTTGAGGAC 60.392 60.000 40.16 23.88 42.54 3.85
5430 9343 0.545309 AGCTACTGGCCAGTTGAGGA 60.545 55.000 40.16 24.67 42.54 3.71
5431 9344 0.107945 GAGCTACTGGCCAGTTGAGG 60.108 60.000 40.16 28.17 42.54 3.86
5434 9347 2.119801 AATGAGCTACTGGCCAGTTG 57.880 50.000 41.69 37.69 42.54 3.16
5435 9348 2.887151 AAATGAGCTACTGGCCAGTT 57.113 45.000 41.69 25.79 42.54 3.16
5437 9350 5.128919 AGAAATAAATGAGCTACTGGCCAG 58.871 41.667 31.60 31.60 43.05 4.85
5438 9351 5.116084 AGAAATAAATGAGCTACTGGCCA 57.884 39.130 4.71 4.71 43.05 5.36
5439 9352 6.268566 CAAAGAAATAAATGAGCTACTGGCC 58.731 40.000 0.00 0.00 43.05 5.36
5441 9354 6.096001 AGGCAAAGAAATAAATGAGCTACTGG 59.904 38.462 0.00 0.00 0.00 4.00
5443 9356 6.096001 CCAGGCAAAGAAATAAATGAGCTACT 59.904 38.462 0.00 0.00 0.00 2.57
5445 9358 5.951747 ACCAGGCAAAGAAATAAATGAGCTA 59.048 36.000 0.00 0.00 0.00 3.32
5449 9370 5.774690 ACTGACCAGGCAAAGAAATAAATGA 59.225 36.000 1.82 0.00 0.00 2.57
5455 9376 2.519013 GGACTGACCAGGCAAAGAAAT 58.481 47.619 5.12 0.00 38.52 2.17
5510 9431 0.248907 ACGCCGGACATCGTTGATAG 60.249 55.000 5.05 0.00 35.09 2.08
5511 9432 0.173935 AACGCCGGACATCGTTGATA 59.826 50.000 15.38 0.00 41.37 2.15
5512 9433 1.079405 AACGCCGGACATCGTTGAT 60.079 52.632 15.38 0.00 41.37 2.57
5582 9503 0.513717 GATCGTCGCGTTTTGACACG 60.514 55.000 5.77 6.99 43.36 4.49
5583 9504 0.513717 CGATCGTCGCGTTTTGACAC 60.514 55.000 7.03 0.00 36.11 3.67
5584 9505 1.770432 CGATCGTCGCGTTTTGACA 59.230 52.632 7.03 0.00 36.11 3.58
5585 9506 4.600517 CGATCGTCGCGTTTTGAC 57.399 55.556 7.03 0.00 31.14 3.18
5601 9522 0.028770 TGCGTTCTTTTGACCAAGCG 59.971 50.000 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.