Multiple sequence alignment - TraesCS6B01G326700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G326700 chr6B 100.000 2359 0 0 1 2359 576270335 576267977 0.000000e+00 4357
1 TraesCS6B01G326700 chr6B 100.000 401 0 0 2768 3168 576267568 576267168 0.000000e+00 741
2 TraesCS6B01G326700 chr6D 94.668 1369 61 4 929 2289 385787150 385785786 0.000000e+00 2113
3 TraesCS6B01G326700 chr6A 93.071 1371 67 10 929 2289 530252983 530251631 0.000000e+00 1980
4 TraesCS6B01G326700 chr2B 95.643 941 28 9 1 928 68360173 68361113 0.000000e+00 1498
5 TraesCS6B01G326700 chr5D 98.050 718 12 1 1 718 533654198 533654913 0.000000e+00 1247
6 TraesCS6B01G326700 chr5D 97.772 718 16 0 1 718 80217439 80216722 0.000000e+00 1238
7 TraesCS6B01G326700 chr5D 97.775 719 15 1 1 718 463714901 463715619 0.000000e+00 1238
8 TraesCS6B01G326700 chr5D 97.772 718 16 0 1 718 495385309 495386026 0.000000e+00 1238
9 TraesCS6B01G326700 chr5D 97.772 718 16 0 1 718 530780805 530780088 0.000000e+00 1238
10 TraesCS6B01G326700 chr5D 93.925 214 9 2 719 928 519635444 519635657 1.420000e-83 320
11 TraesCS6B01G326700 chr5D 95.074 203 8 2 727 928 530630621 530630420 5.100000e-83 318
12 TraesCS6B01G326700 chr3D 97.911 718 15 0 1 718 437767420 437768137 0.000000e+00 1243
13 TraesCS6B01G326700 chr3D 94.393 214 8 2 719 928 602791233 602791020 3.050000e-85 326
14 TraesCS6B01G326700 chr4D 97.772 718 16 0 1 718 437727767 437728484 0.000000e+00 1238
15 TraesCS6B01G326700 chr4D 87.903 372 44 1 987 1358 422548511 422548881 1.350000e-118 436
16 TraesCS6B01G326700 chr4D 93.519 216 8 4 719 928 3327717 3327502 1.830000e-82 316
17 TraesCS6B01G326700 chr1D 97.772 718 16 0 1 718 115030803 115031520 0.000000e+00 1238
18 TraesCS6B01G326700 chr1D 89.488 371 33 6 2803 3168 460919524 460919155 6.190000e-127 464
19 TraesCS6B01G326700 chr1D 93.488 215 10 2 719 929 487187875 487188089 1.830000e-82 316
20 TraesCS6B01G326700 chr1A 89.751 361 32 5 2802 3158 37619240 37618881 1.040000e-124 457
21 TraesCS6B01G326700 chr1A 89.474 361 34 4 2801 3158 147684660 147685019 1.340000e-123 453
22 TraesCS6B01G326700 chr1A 92.857 224 10 4 719 936 177466094 177465871 1.420000e-83 320
23 TraesCS6B01G326700 chr7A 89.315 365 33 6 2799 3158 692756244 692756607 1.340000e-123 453
24 TraesCS6B01G326700 chr7A 89.474 361 32 6 2803 3158 439630046 439630405 4.820000e-123 451
25 TraesCS6B01G326700 chr2A 89.503 362 33 5 2801 3158 688238851 688238491 1.340000e-123 453
26 TraesCS6B01G326700 chr2A 88.770 374 31 10 2800 3168 757931584 757931951 6.230000e-122 448
27 TraesCS6B01G326700 chr2A 88.052 385 36 9 2779 3158 771203450 771203071 6.230000e-122 448
28 TraesCS6B01G326700 chr4B 88.378 370 38 5 2802 3168 12091704 12091337 1.040000e-119 440
29 TraesCS6B01G326700 chr4B 87.047 386 46 3 979 1360 519403863 519404248 1.750000e-117 433
30 TraesCS6B01G326700 chr7B 94.836 213 7 3 719 929 673606154 673605944 2.360000e-86 329
31 TraesCS6B01G326700 chr7B 94.393 214 8 3 719 929 60481972 60481760 3.050000e-85 326


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G326700 chr6B 576267168 576270335 3167 True 2549 4357 100.000 1 3168 2 chr6B.!!$R1 3167
1 TraesCS6B01G326700 chr6D 385785786 385787150 1364 True 2113 2113 94.668 929 2289 1 chr6D.!!$R1 1360
2 TraesCS6B01G326700 chr6A 530251631 530252983 1352 True 1980 1980 93.071 929 2289 1 chr6A.!!$R1 1360
3 TraesCS6B01G326700 chr2B 68360173 68361113 940 False 1498 1498 95.643 1 928 1 chr2B.!!$F1 927
4 TraesCS6B01G326700 chr5D 533654198 533654913 715 False 1247 1247 98.050 1 718 1 chr5D.!!$F4 717
5 TraesCS6B01G326700 chr5D 80216722 80217439 717 True 1238 1238 97.772 1 718 1 chr5D.!!$R1 717
6 TraesCS6B01G326700 chr5D 463714901 463715619 718 False 1238 1238 97.775 1 718 1 chr5D.!!$F1 717
7 TraesCS6B01G326700 chr5D 495385309 495386026 717 False 1238 1238 97.772 1 718 1 chr5D.!!$F2 717
8 TraesCS6B01G326700 chr5D 530780088 530780805 717 True 1238 1238 97.772 1 718 1 chr5D.!!$R3 717
9 TraesCS6B01G326700 chr3D 437767420 437768137 717 False 1243 1243 97.911 1 718 1 chr3D.!!$F1 717
10 TraesCS6B01G326700 chr4D 437727767 437728484 717 False 1238 1238 97.772 1 718 1 chr4D.!!$F2 717
11 TraesCS6B01G326700 chr1D 115030803 115031520 717 False 1238 1238 97.772 1 718 1 chr1D.!!$F1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 769 0.387239 GGCGAGCACATGTGGTTTTC 60.387 55.000 29.63 20.24 41.93 2.29 F
756 770 0.725784 GCGAGCACATGTGGTTTTCG 60.726 55.000 29.63 26.88 41.93 3.46 F
2151 2175 1.062121 TGGGGTAGAGAAGGATGGAGG 60.062 57.143 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 2092 0.034896 AGTGCCGGAACTTGGTGTAG 59.965 55.0 10.19 0.00 0.0 2.74 R
2155 2179 0.179000 AGTTCGATCACTCCATGGGC 59.821 55.0 13.02 0.00 0.0 5.36 R
3086 3110 0.179225 GAAGGCATAACACACACGCG 60.179 55.0 3.53 3.53 0.0 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
261 262 4.801330 AAGATGTTGGACGTACTGATCA 57.199 40.909 0.00 0.00 0.00 2.92
334 335 1.835121 CTGACGGCGATGAATACGAA 58.165 50.000 16.62 0.00 0.00 3.85
343 344 5.220381 GGCGATGAATACGAAGATGAGTAA 58.780 41.667 0.00 0.00 0.00 2.24
399 400 1.578618 GAATTTGAGCAGTCGCGCG 60.579 57.895 26.76 26.76 45.49 6.86
565 567 2.963101 AGGCAAAACCCTAGGTGTTTTC 59.037 45.455 25.82 21.22 42.38 2.29
568 570 3.215975 CAAAACCCTAGGTGTTTTCCGA 58.784 45.455 25.82 0.00 42.38 4.55
576 578 4.081862 CCTAGGTGTTTTCCGATGTGTCTA 60.082 45.833 0.00 0.00 0.00 2.59
642 644 1.374252 GTGTCGCGACCACAATCCT 60.374 57.895 34.34 0.00 0.00 3.24
647 649 1.274167 TCGCGACCACAATCCTAAACT 59.726 47.619 3.71 0.00 0.00 2.66
722 732 4.109766 GCCAAGACATAAAAATAACCCGC 58.890 43.478 0.00 0.00 0.00 6.13
755 769 0.387239 GGCGAGCACATGTGGTTTTC 60.387 55.000 29.63 20.24 41.93 2.29
756 770 0.725784 GCGAGCACATGTGGTTTTCG 60.726 55.000 29.63 26.88 41.93 3.46
777 791 2.545946 GCTTTCTCTTCTCACACACCAC 59.454 50.000 0.00 0.00 0.00 4.16
818 832 7.572861 AGAACCCACTATATAAAGAGGTCCAAT 59.427 37.037 0.00 0.00 0.00 3.16
864 879 2.729028 AACTTAGCACCACCACTTGT 57.271 45.000 0.00 0.00 0.00 3.16
874 889 4.440802 GCACCACCACTTGTCATTTTACAA 60.441 41.667 0.00 0.00 37.75 2.41
887 902 6.041409 TGTCATTTTACAAATGGGCTTTGAGA 59.959 34.615 8.90 0.00 45.96 3.27
967 982 2.355756 CACATATCAGAAGCCAAACCGG 59.644 50.000 0.00 0.00 38.11 5.28
977 992 3.047877 CAAACCGGTGGGCTCGAC 61.048 66.667 8.52 0.00 36.48 4.20
993 1008 3.069980 GACCGACGGCTCAGAGCAT 62.070 63.158 24.09 11.40 44.75 3.79
1087 1102 4.735132 CGGTGACCGCGTCCATGT 62.735 66.667 12.53 0.00 41.17 3.21
1089 1104 1.964373 GGTGACCGCGTCCATGTTT 60.964 57.895 4.92 0.00 0.00 2.83
1155 1170 2.432300 CCGTCAGGGGCTATTCGGT 61.432 63.158 0.00 0.00 34.38 4.69
1326 1341 2.182030 GACTTCGCCGACCTCCTG 59.818 66.667 0.00 0.00 0.00 3.86
1330 1345 4.671590 TCGCCGACCTCCTGTGGA 62.672 66.667 0.00 0.00 0.00 4.02
1335 1350 2.982130 GACCTCCTGTGGACGCAT 59.018 61.111 0.00 0.00 0.00 4.73
1941 1960 2.523168 TGCCTCCACCGTGTCAGA 60.523 61.111 0.00 0.00 0.00 3.27
2018 2042 3.699955 TTGAGCGCGATGGACGAGG 62.700 63.158 12.10 0.00 45.77 4.63
2068 2092 1.339946 GGCCGTGTAAGAACGACGAC 61.340 60.000 0.00 0.00 46.49 4.34
2109 2133 1.402852 GGAAGAAGGGCGCAAATTCAC 60.403 52.381 10.83 8.16 0.00 3.18
2117 2141 1.406539 GGCGCAAATTCACTGATCCAT 59.593 47.619 10.83 0.00 0.00 3.41
2123 2147 5.107133 GCAAATTCACTGATCCATTGAAGG 58.893 41.667 6.06 0.00 36.70 3.46
2137 2161 1.440618 TGAAGGCTTTCTGTGGGGTA 58.559 50.000 10.19 0.00 34.31 3.69
2150 2174 2.043227 GTGGGGTAGAGAAGGATGGAG 58.957 57.143 0.00 0.00 0.00 3.86
2151 2175 1.062121 TGGGGTAGAGAAGGATGGAGG 60.062 57.143 0.00 0.00 0.00 4.30
2152 2176 1.220750 GGGGTAGAGAAGGATGGAGGA 59.779 57.143 0.00 0.00 0.00 3.71
2155 2179 2.823154 GGTAGAGAAGGATGGAGGATCG 59.177 54.545 0.00 0.00 34.37 3.69
2164 2188 1.486997 ATGGAGGATCGCCCATGGAG 61.487 60.000 15.22 7.12 41.32 3.86
2176 2200 1.536922 CCCATGGAGTGATCGAACTCG 60.537 57.143 15.22 0.00 46.31 4.18
2229 2253 3.090037 GAGTGAGGTAGCCTGTTAGACA 58.910 50.000 0.00 0.00 31.76 3.41
2268 2292 7.025963 GGAAAGAGCATTTATCTTTGAGTGTG 58.974 38.462 5.72 0.00 44.85 3.82
2274 2298 8.621532 AGCATTTATCTTTGAGTGTGAAGTTA 57.378 30.769 0.00 0.00 0.00 2.24
2289 2313 4.335594 GTGAAGTTAGTCAAAACCTGCAGT 59.664 41.667 13.81 0.00 0.00 4.40
2290 2314 4.947388 TGAAGTTAGTCAAAACCTGCAGTT 59.053 37.500 13.81 4.33 41.81 3.16
2291 2315 6.037830 GTGAAGTTAGTCAAAACCTGCAGTTA 59.962 38.462 13.81 0.00 37.88 2.24
2292 2316 6.037830 TGAAGTTAGTCAAAACCTGCAGTTAC 59.962 38.462 13.81 3.16 37.88 2.50
2293 2317 4.510340 AGTTAGTCAAAACCTGCAGTTACG 59.490 41.667 13.81 0.00 37.88 3.18
2294 2318 2.914059 AGTCAAAACCTGCAGTTACGT 58.086 42.857 13.81 0.00 37.88 3.57
2295 2319 3.275999 AGTCAAAACCTGCAGTTACGTT 58.724 40.909 13.81 6.61 37.88 3.99
2296 2320 3.064820 AGTCAAAACCTGCAGTTACGTTG 59.935 43.478 13.81 9.35 37.88 4.10
2297 2321 3.011119 TCAAAACCTGCAGTTACGTTGT 58.989 40.909 13.81 1.53 37.88 3.32
2298 2322 3.440872 TCAAAACCTGCAGTTACGTTGTT 59.559 39.130 13.81 4.69 37.88 2.83
2299 2323 3.414549 AAACCTGCAGTTACGTTGTTG 57.585 42.857 13.81 0.00 37.88 3.33
2300 2324 2.032680 ACCTGCAGTTACGTTGTTGT 57.967 45.000 13.81 0.00 0.00 3.32
2301 2325 3.182341 ACCTGCAGTTACGTTGTTGTA 57.818 42.857 13.81 0.00 0.00 2.41
2302 2326 2.867975 ACCTGCAGTTACGTTGTTGTAC 59.132 45.455 13.81 0.00 0.00 2.90
2303 2327 2.867368 CCTGCAGTTACGTTGTTGTACA 59.133 45.455 13.81 0.00 0.00 2.90
2304 2328 3.310227 CCTGCAGTTACGTTGTTGTACAA 59.690 43.478 13.81 3.59 35.42 2.41
2305 2329 8.528090 AACCTGCAGTTACGTTGTTGTACAAC 62.528 42.308 28.13 28.13 44.81 3.32
2351 2375 7.848491 TCTTTCTTAGTTTCTTCTTTGTACGC 58.152 34.615 0.00 0.00 0.00 4.42
2352 2376 6.535274 TTCTTAGTTTCTTCTTTGTACGCC 57.465 37.500 0.00 0.00 0.00 5.68
2353 2377 4.992951 TCTTAGTTTCTTCTTTGTACGCCC 59.007 41.667 0.00 0.00 0.00 6.13
2354 2378 3.487120 AGTTTCTTCTTTGTACGCCCT 57.513 42.857 0.00 0.00 0.00 5.19
2355 2379 3.400255 AGTTTCTTCTTTGTACGCCCTC 58.600 45.455 0.00 0.00 0.00 4.30
2356 2380 2.467566 TTCTTCTTTGTACGCCCTCC 57.532 50.000 0.00 0.00 0.00 4.30
2357 2381 0.611714 TCTTCTTTGTACGCCCTCCC 59.388 55.000 0.00 0.00 0.00 4.30
2358 2382 0.392595 CTTCTTTGTACGCCCTCCCC 60.393 60.000 0.00 0.00 0.00 4.81
2805 2829 9.778741 AAGTTAATCAATGACACAAAGTAGAGA 57.221 29.630 0.00 0.00 0.00 3.10
2806 2830 9.778741 AGTTAATCAATGACACAAAGTAGAGAA 57.221 29.630 0.00 0.00 0.00 2.87
2807 2831 9.813080 GTTAATCAATGACACAAAGTAGAGAAC 57.187 33.333 0.00 0.00 0.00 3.01
2808 2832 6.712241 ATCAATGACACAAAGTAGAGAACG 57.288 37.500 0.00 0.00 0.00 3.95
2809 2833 4.988540 TCAATGACACAAAGTAGAGAACGG 59.011 41.667 0.00 0.00 0.00 4.44
2810 2834 4.866508 ATGACACAAAGTAGAGAACGGA 57.133 40.909 0.00 0.00 0.00 4.69
2811 2835 3.973657 TGACACAAAGTAGAGAACGGAC 58.026 45.455 0.00 0.00 0.00 4.79
2812 2836 2.978489 GACACAAAGTAGAGAACGGACG 59.022 50.000 0.00 0.00 0.00 4.79
2813 2837 2.360165 ACACAAAGTAGAGAACGGACGT 59.640 45.455 0.00 0.00 0.00 4.34
2814 2838 3.181483 ACACAAAGTAGAGAACGGACGTT 60.181 43.478 10.13 10.13 41.54 3.99
2815 2839 3.800506 CACAAAGTAGAGAACGGACGTTT 59.199 43.478 11.67 2.17 38.60 3.60
2816 2840 3.800506 ACAAAGTAGAGAACGGACGTTTG 59.199 43.478 11.67 5.91 38.60 2.93
2817 2841 2.719426 AGTAGAGAACGGACGTTTGG 57.281 50.000 11.67 0.00 38.60 3.28
2818 2842 1.066136 GTAGAGAACGGACGTTTGGC 58.934 55.000 11.67 4.66 38.60 4.52
2819 2843 0.963962 TAGAGAACGGACGTTTGGCT 59.036 50.000 11.67 11.11 38.60 4.75
2820 2844 0.319641 AGAGAACGGACGTTTGGCTC 60.320 55.000 11.67 12.81 38.60 4.70
2821 2845 1.289800 GAGAACGGACGTTTGGCTCC 61.290 60.000 11.67 0.00 38.60 4.70
2822 2846 2.281276 AACGGACGTTTGGCTCCC 60.281 61.111 3.99 0.00 34.22 4.30
2823 2847 4.675029 ACGGACGTTTGGCTCCCG 62.675 66.667 7.93 7.93 45.09 5.14
2835 2859 3.554342 CTCCCGGCCTCCATGGAG 61.554 72.222 31.69 31.69 41.63 3.86
2846 2870 2.648059 CTCCATGGAGGCCTTTTACTG 58.352 52.381 31.14 4.36 38.51 2.74
2847 2871 2.239654 CTCCATGGAGGCCTTTTACTGA 59.760 50.000 31.14 0.00 38.51 3.41
2848 2872 2.647299 TCCATGGAGGCCTTTTACTGAA 59.353 45.455 11.44 0.00 37.29 3.02
2849 2873 3.075283 TCCATGGAGGCCTTTTACTGAAA 59.925 43.478 11.44 0.00 37.29 2.69
2850 2874 3.831911 CCATGGAGGCCTTTTACTGAAAA 59.168 43.478 6.77 0.00 33.48 2.29
2851 2875 4.321974 CCATGGAGGCCTTTTACTGAAAAC 60.322 45.833 6.77 0.00 31.23 2.43
2852 2876 3.904717 TGGAGGCCTTTTACTGAAAACA 58.095 40.909 6.77 0.00 31.23 2.83
2853 2877 4.282496 TGGAGGCCTTTTACTGAAAACAA 58.718 39.130 6.77 0.00 31.23 2.83
2854 2878 4.712337 TGGAGGCCTTTTACTGAAAACAAA 59.288 37.500 6.77 0.00 31.23 2.83
2855 2879 5.365314 TGGAGGCCTTTTACTGAAAACAAAT 59.635 36.000 6.77 0.00 31.23 2.32
2856 2880 5.926542 GGAGGCCTTTTACTGAAAACAAATC 59.073 40.000 6.77 0.00 31.23 2.17
2857 2881 6.462347 GGAGGCCTTTTACTGAAAACAAATCA 60.462 38.462 6.77 0.00 31.23 2.57
2858 2882 6.883744 AGGCCTTTTACTGAAAACAAATCAA 58.116 32.000 0.00 0.00 31.23 2.57
2859 2883 7.334858 AGGCCTTTTACTGAAAACAAATCAAA 58.665 30.769 0.00 0.00 31.23 2.69
2860 2884 7.826744 AGGCCTTTTACTGAAAACAAATCAAAA 59.173 29.630 0.00 0.00 31.23 2.44
2861 2885 8.620416 GGCCTTTTACTGAAAACAAATCAAAAT 58.380 29.630 0.00 0.00 31.23 1.82
2917 2941 4.871933 AAATTGCAAGTAAACAGGGAGG 57.128 40.909 4.94 0.00 0.00 4.30
2918 2942 3.525800 ATTGCAAGTAAACAGGGAGGT 57.474 42.857 4.94 0.00 0.00 3.85
2919 2943 3.306472 TTGCAAGTAAACAGGGAGGTT 57.694 42.857 0.00 0.00 0.00 3.50
2920 2944 4.440826 TTGCAAGTAAACAGGGAGGTTA 57.559 40.909 0.00 0.00 0.00 2.85
2921 2945 4.650972 TGCAAGTAAACAGGGAGGTTAT 57.349 40.909 0.00 0.00 30.78 1.89
2922 2946 4.331968 TGCAAGTAAACAGGGAGGTTATG 58.668 43.478 0.00 0.00 30.78 1.90
2923 2947 3.128764 GCAAGTAAACAGGGAGGTTATGC 59.871 47.826 0.00 0.00 30.78 3.14
2924 2948 3.261981 AGTAAACAGGGAGGTTATGCG 57.738 47.619 0.00 0.00 30.78 4.73
2925 2949 2.570302 AGTAAACAGGGAGGTTATGCGT 59.430 45.455 0.00 0.00 30.78 5.24
2926 2950 3.770933 AGTAAACAGGGAGGTTATGCGTA 59.229 43.478 0.00 0.00 30.78 4.42
2927 2951 3.926058 AAACAGGGAGGTTATGCGTAT 57.074 42.857 0.00 0.00 0.00 3.06
2928 2952 2.910688 ACAGGGAGGTTATGCGTATG 57.089 50.000 0.00 0.00 0.00 2.39
2929 2953 2.116238 ACAGGGAGGTTATGCGTATGT 58.884 47.619 0.00 0.00 0.00 2.29
2930 2954 2.158957 ACAGGGAGGTTATGCGTATGTG 60.159 50.000 0.00 0.00 0.00 3.21
2931 2955 2.116238 AGGGAGGTTATGCGTATGTGT 58.884 47.619 0.00 0.00 0.00 3.72
2932 2956 3.069016 CAGGGAGGTTATGCGTATGTGTA 59.931 47.826 0.00 0.00 0.00 2.90
2933 2957 3.901844 AGGGAGGTTATGCGTATGTGTAT 59.098 43.478 0.00 0.00 0.00 2.29
2934 2958 5.047590 CAGGGAGGTTATGCGTATGTGTATA 60.048 44.000 0.00 0.00 0.00 1.47
2935 2959 5.541101 AGGGAGGTTATGCGTATGTGTATAA 59.459 40.000 0.00 0.00 0.00 0.98
2936 2960 6.042322 AGGGAGGTTATGCGTATGTGTATAAA 59.958 38.462 0.00 0.00 29.99 1.40
2937 2961 6.707161 GGGAGGTTATGCGTATGTGTATAAAA 59.293 38.462 0.00 0.00 29.99 1.52
2938 2962 7.389607 GGGAGGTTATGCGTATGTGTATAAAAT 59.610 37.037 0.00 0.00 29.99 1.82
2939 2963 8.780249 GGAGGTTATGCGTATGTGTATAAAATT 58.220 33.333 0.00 0.00 29.99 1.82
2940 2964 9.807386 GAGGTTATGCGTATGTGTATAAAATTC 57.193 33.333 0.00 0.00 29.99 2.17
2941 2965 9.332502 AGGTTATGCGTATGTGTATAAAATTCA 57.667 29.630 0.00 0.00 29.99 2.57
2942 2966 9.594038 GGTTATGCGTATGTGTATAAAATTCAG 57.406 33.333 0.00 0.00 29.99 3.02
2943 2967 9.594038 GTTATGCGTATGTGTATAAAATTCAGG 57.406 33.333 0.00 0.00 29.99 3.86
2944 2968 9.549078 TTATGCGTATGTGTATAAAATTCAGGA 57.451 29.630 0.00 0.00 0.00 3.86
2945 2969 8.621532 ATGCGTATGTGTATAAAATTCAGGAT 57.378 30.769 0.00 0.00 0.00 3.24
2946 2970 7.860613 TGCGTATGTGTATAAAATTCAGGATG 58.139 34.615 0.00 0.00 37.54 3.51
2961 2985 4.797471 TCAGGATGAAAAGCGTTGAAATG 58.203 39.130 0.00 0.00 45.97 2.32
2962 2986 4.278170 TCAGGATGAAAAGCGTTGAAATGT 59.722 37.500 0.00 0.00 45.97 2.71
2963 2987 4.383649 CAGGATGAAAAGCGTTGAAATGTG 59.616 41.667 0.00 0.00 39.69 3.21
2964 2988 4.278170 AGGATGAAAAGCGTTGAAATGTGA 59.722 37.500 0.00 0.00 0.00 3.58
2965 2989 4.382754 GGATGAAAAGCGTTGAAATGTGAC 59.617 41.667 0.00 0.00 0.00 3.67
2966 2990 3.701241 TGAAAAGCGTTGAAATGTGACC 58.299 40.909 0.00 0.00 0.00 4.02
2967 2991 3.380004 TGAAAAGCGTTGAAATGTGACCT 59.620 39.130 0.00 0.00 0.00 3.85
2968 2992 3.354089 AAAGCGTTGAAATGTGACCTG 57.646 42.857 0.00 0.00 0.00 4.00
2969 2993 1.967319 AGCGTTGAAATGTGACCTGT 58.033 45.000 0.00 0.00 0.00 4.00
2970 2994 3.120321 AGCGTTGAAATGTGACCTGTA 57.880 42.857 0.00 0.00 0.00 2.74
2971 2995 2.806244 AGCGTTGAAATGTGACCTGTAC 59.194 45.455 0.00 0.00 0.00 2.90
2972 2996 2.546368 GCGTTGAAATGTGACCTGTACA 59.454 45.455 0.00 0.00 0.00 2.90
2973 2997 3.002862 GCGTTGAAATGTGACCTGTACAA 59.997 43.478 0.00 0.00 0.00 2.41
2974 2998 4.496673 GCGTTGAAATGTGACCTGTACAAA 60.497 41.667 0.00 0.00 0.00 2.83
2975 2999 5.574082 CGTTGAAATGTGACCTGTACAAAA 58.426 37.500 0.00 0.00 0.00 2.44
2976 3000 6.030849 CGTTGAAATGTGACCTGTACAAAAA 58.969 36.000 0.00 0.00 0.00 1.94
2997 3021 7.461182 AAAAATACAAATTCATGGTCTCGGA 57.539 32.000 0.00 0.00 0.00 4.55
2998 3022 6.683974 AAATACAAATTCATGGTCTCGGAG 57.316 37.500 0.00 0.00 0.00 4.63
2999 3023 2.991250 ACAAATTCATGGTCTCGGAGG 58.009 47.619 4.96 0.00 0.00 4.30
3000 3024 2.571653 ACAAATTCATGGTCTCGGAGGA 59.428 45.455 4.96 0.00 0.00 3.71
3001 3025 3.200825 ACAAATTCATGGTCTCGGAGGAT 59.799 43.478 4.96 0.00 0.00 3.24
3002 3026 3.482156 AATTCATGGTCTCGGAGGATG 57.518 47.619 4.96 5.83 0.00 3.51
3003 3027 2.159179 TTCATGGTCTCGGAGGATGA 57.841 50.000 4.96 7.94 0.00 2.92
3004 3028 2.159179 TCATGGTCTCGGAGGATGAA 57.841 50.000 4.96 0.00 0.00 2.57
3005 3029 2.682594 TCATGGTCTCGGAGGATGAAT 58.317 47.619 4.96 0.00 0.00 2.57
3006 3030 3.844640 TCATGGTCTCGGAGGATGAATA 58.155 45.455 4.96 0.00 0.00 1.75
3007 3031 3.829026 TCATGGTCTCGGAGGATGAATAG 59.171 47.826 4.96 0.00 0.00 1.73
3008 3032 3.314307 TGGTCTCGGAGGATGAATAGT 57.686 47.619 4.96 0.00 0.00 2.12
3009 3033 4.448720 TGGTCTCGGAGGATGAATAGTA 57.551 45.455 4.96 0.00 0.00 1.82
3010 3034 4.999310 TGGTCTCGGAGGATGAATAGTAT 58.001 43.478 4.96 0.00 0.00 2.12
3011 3035 5.394738 TGGTCTCGGAGGATGAATAGTATT 58.605 41.667 4.96 0.00 0.00 1.89
3012 3036 6.549242 TGGTCTCGGAGGATGAATAGTATTA 58.451 40.000 4.96 0.00 0.00 0.98
3013 3037 6.433404 TGGTCTCGGAGGATGAATAGTATTAC 59.567 42.308 4.96 0.00 0.00 1.89
3014 3038 6.403418 GGTCTCGGAGGATGAATAGTATTACG 60.403 46.154 4.96 0.00 0.00 3.18
3015 3039 6.149142 GTCTCGGAGGATGAATAGTATTACGT 59.851 42.308 4.96 0.00 0.00 3.57
3016 3040 6.148976 TCTCGGAGGATGAATAGTATTACGTG 59.851 42.308 4.96 0.00 0.00 4.49
3017 3041 5.766670 TCGGAGGATGAATAGTATTACGTGT 59.233 40.000 0.00 0.00 0.00 4.49
3018 3042 6.263842 TCGGAGGATGAATAGTATTACGTGTT 59.736 38.462 0.00 0.00 0.00 3.32
3019 3043 7.445096 TCGGAGGATGAATAGTATTACGTGTTA 59.555 37.037 0.00 0.00 0.00 2.41
3020 3044 8.077991 CGGAGGATGAATAGTATTACGTGTTAA 58.922 37.037 0.00 0.00 0.00 2.01
3021 3045 9.754382 GGAGGATGAATAGTATTACGTGTTAAA 57.246 33.333 0.00 0.00 0.00 1.52
3027 3051 9.439500 TGAATAGTATTACGTGTTAAAAAGCCT 57.561 29.630 0.00 0.00 0.00 4.58
3028 3052 9.911980 GAATAGTATTACGTGTTAAAAAGCCTC 57.088 33.333 0.00 0.00 0.00 4.70
3029 3053 9.439500 AATAGTATTACGTGTTAAAAAGCCTCA 57.561 29.630 0.00 0.00 0.00 3.86
3030 3054 7.360575 AGTATTACGTGTTAAAAAGCCTCAG 57.639 36.000 0.00 0.00 0.00 3.35
3031 3055 7.156673 AGTATTACGTGTTAAAAAGCCTCAGA 58.843 34.615 0.00 0.00 0.00 3.27
3032 3056 7.822822 AGTATTACGTGTTAAAAAGCCTCAGAT 59.177 33.333 0.00 0.00 0.00 2.90
3033 3057 6.870971 TTACGTGTTAAAAAGCCTCAGATT 57.129 33.333 0.00 0.00 0.00 2.40
3034 3058 5.767816 ACGTGTTAAAAAGCCTCAGATTT 57.232 34.783 0.00 0.00 31.52 2.17
3035 3059 5.519722 ACGTGTTAAAAAGCCTCAGATTTG 58.480 37.500 0.00 0.00 30.45 2.32
3036 3060 5.067283 ACGTGTTAAAAAGCCTCAGATTTGT 59.933 36.000 0.00 0.00 30.45 2.83
3037 3061 5.625311 CGTGTTAAAAAGCCTCAGATTTGTC 59.375 40.000 0.00 0.00 30.45 3.18
3038 3062 6.513393 CGTGTTAAAAAGCCTCAGATTTGTCT 60.513 38.462 0.00 0.00 30.45 3.41
3039 3063 7.203218 GTGTTAAAAAGCCTCAGATTTGTCTT 58.797 34.615 0.00 0.00 30.45 3.01
3040 3064 7.706607 GTGTTAAAAAGCCTCAGATTTGTCTTT 59.293 33.333 0.00 0.00 30.45 2.52
3041 3065 8.257306 TGTTAAAAAGCCTCAGATTTGTCTTTT 58.743 29.630 0.00 0.00 34.42 2.27
3042 3066 9.098355 GTTAAAAAGCCTCAGATTTGTCTTTTT 57.902 29.630 19.16 19.16 39.51 1.94
3059 3083 2.818130 TTTTGCACAGCCCTCATTTC 57.182 45.000 0.00 0.00 0.00 2.17
3060 3084 1.702182 TTTGCACAGCCCTCATTTCA 58.298 45.000 0.00 0.00 0.00 2.69
3061 3085 1.702182 TTGCACAGCCCTCATTTCAA 58.298 45.000 0.00 0.00 0.00 2.69
3062 3086 0.961019 TGCACAGCCCTCATTTCAAC 59.039 50.000 0.00 0.00 0.00 3.18
3063 3087 0.961019 GCACAGCCCTCATTTCAACA 59.039 50.000 0.00 0.00 0.00 3.33
3064 3088 1.547372 GCACAGCCCTCATTTCAACAT 59.453 47.619 0.00 0.00 0.00 2.71
3065 3089 2.754552 GCACAGCCCTCATTTCAACATA 59.245 45.455 0.00 0.00 0.00 2.29
3066 3090 3.382546 GCACAGCCCTCATTTCAACATAT 59.617 43.478 0.00 0.00 0.00 1.78
3067 3091 4.142093 GCACAGCCCTCATTTCAACATATT 60.142 41.667 0.00 0.00 0.00 1.28
3068 3092 5.625197 GCACAGCCCTCATTTCAACATATTT 60.625 40.000 0.00 0.00 0.00 1.40
3069 3093 6.400568 CACAGCCCTCATTTCAACATATTTT 58.599 36.000 0.00 0.00 0.00 1.82
3070 3094 6.311935 CACAGCCCTCATTTCAACATATTTTG 59.688 38.462 0.00 0.00 0.00 2.44
3071 3095 5.292589 CAGCCCTCATTTCAACATATTTTGC 59.707 40.000 0.00 0.00 0.00 3.68
3072 3096 4.571984 GCCCTCATTTCAACATATTTTGCC 59.428 41.667 0.00 0.00 0.00 4.52
3073 3097 5.118286 CCCTCATTTCAACATATTTTGCCC 58.882 41.667 0.00 0.00 0.00 5.36
3074 3098 5.104817 CCCTCATTTCAACATATTTTGCCCT 60.105 40.000 0.00 0.00 0.00 5.19
3075 3099 5.813672 CCTCATTTCAACATATTTTGCCCTG 59.186 40.000 0.00 0.00 0.00 4.45
3076 3100 6.351202 CCTCATTTCAACATATTTTGCCCTGA 60.351 38.462 0.00 0.00 0.00 3.86
3077 3101 7.002250 TCATTTCAACATATTTTGCCCTGAA 57.998 32.000 0.00 0.00 0.00 3.02
3078 3102 7.448420 TCATTTCAACATATTTTGCCCTGAAA 58.552 30.769 0.00 0.00 36.73 2.69
3079 3103 7.935755 TCATTTCAACATATTTTGCCCTGAAAA 59.064 29.630 0.00 0.00 36.30 2.29
3080 3104 8.732531 CATTTCAACATATTTTGCCCTGAAAAT 58.267 29.630 0.00 0.00 36.30 1.82
3081 3105 8.688747 TTTCAACATATTTTGCCCTGAAAATT 57.311 26.923 0.00 0.00 36.94 1.82
3082 3106 8.688747 TTCAACATATTTTGCCCTGAAAATTT 57.311 26.923 0.00 0.00 36.94 1.82
3083 3107 9.784531 TTCAACATATTTTGCCCTGAAAATTTA 57.215 25.926 0.00 0.00 36.94 1.40
3084 3108 9.213799 TCAACATATTTTGCCCTGAAAATTTAC 57.786 29.630 0.00 0.00 36.94 2.01
3085 3109 8.997323 CAACATATTTTGCCCTGAAAATTTACA 58.003 29.630 0.00 0.00 36.94 2.41
3086 3110 8.546597 ACATATTTTGCCCTGAAAATTTACAC 57.453 30.769 0.00 0.00 36.94 2.90
3087 3111 7.330700 ACATATTTTGCCCTGAAAATTTACACG 59.669 33.333 0.00 0.00 36.94 4.49
3088 3112 2.715737 TGCCCTGAAAATTTACACGC 57.284 45.000 0.00 0.00 0.00 5.34
3089 3113 1.068885 TGCCCTGAAAATTTACACGCG 60.069 47.619 3.53 3.53 0.00 6.01
3090 3114 1.068816 GCCCTGAAAATTTACACGCGT 60.069 47.619 5.58 5.58 0.00 6.01
3091 3115 2.580589 CCCTGAAAATTTACACGCGTG 58.419 47.619 35.99 35.99 0.00 5.34
3092 3116 2.031508 CCCTGAAAATTTACACGCGTGT 60.032 45.455 42.29 42.29 46.87 4.49
3101 3125 4.415490 CACGCGTGTGTGTTATGC 57.585 55.556 30.50 0.00 41.34 3.14
3102 3126 1.154488 CACGCGTGTGTGTTATGCC 60.154 57.895 30.50 0.00 41.34 4.40
3103 3127 1.301401 ACGCGTGTGTGTTATGCCT 60.301 52.632 12.93 0.00 34.47 4.75
3104 3128 0.882927 ACGCGTGTGTGTTATGCCTT 60.883 50.000 12.93 0.00 34.47 4.35
3105 3129 0.179225 CGCGTGTGTGTTATGCCTTC 60.179 55.000 0.00 0.00 0.00 3.46
3106 3130 0.871722 GCGTGTGTGTTATGCCTTCA 59.128 50.000 0.00 0.00 0.00 3.02
3107 3131 1.468520 GCGTGTGTGTTATGCCTTCAT 59.531 47.619 0.00 0.00 36.73 2.57
3108 3132 2.728846 GCGTGTGTGTTATGCCTTCATG 60.729 50.000 0.00 0.00 34.22 3.07
3109 3133 2.483877 CGTGTGTGTTATGCCTTCATGT 59.516 45.455 0.00 0.00 34.22 3.21
3110 3134 3.682377 CGTGTGTGTTATGCCTTCATGTA 59.318 43.478 0.00 0.00 34.22 2.29
3111 3135 4.332543 CGTGTGTGTTATGCCTTCATGTAT 59.667 41.667 0.00 0.00 34.22 2.29
3112 3136 5.522097 CGTGTGTGTTATGCCTTCATGTATA 59.478 40.000 0.00 0.00 34.22 1.47
3113 3137 6.202762 CGTGTGTGTTATGCCTTCATGTATAT 59.797 38.462 0.00 0.00 34.22 0.86
3114 3138 7.569408 CGTGTGTGTTATGCCTTCATGTATATC 60.569 40.741 0.00 0.00 34.22 1.63
3115 3139 7.442364 GTGTGTGTTATGCCTTCATGTATATCT 59.558 37.037 0.00 0.00 34.22 1.98
3116 3140 7.442062 TGTGTGTTATGCCTTCATGTATATCTG 59.558 37.037 0.00 0.00 34.22 2.90
3117 3141 7.442364 GTGTGTTATGCCTTCATGTATATCTGT 59.558 37.037 0.00 0.00 34.22 3.41
3118 3142 8.646900 TGTGTTATGCCTTCATGTATATCTGTA 58.353 33.333 0.00 0.00 34.22 2.74
3119 3143 9.658799 GTGTTATGCCTTCATGTATATCTGTAT 57.341 33.333 0.00 0.00 34.22 2.29
3163 3187 9.743057 AAACACAGAAAATATGAAATTTGACGA 57.257 25.926 0.00 0.00 0.00 4.20
3164 3188 8.728088 ACACAGAAAATATGAAATTTGACGAC 57.272 30.769 0.00 0.00 0.00 4.34
3165 3189 8.349245 ACACAGAAAATATGAAATTTGACGACA 58.651 29.630 0.00 0.00 0.00 4.35
3166 3190 9.345517 CACAGAAAATATGAAATTTGACGACAT 57.654 29.630 0.00 0.00 0.00 3.06
3167 3191 9.912634 ACAGAAAATATGAAATTTGACGACATT 57.087 25.926 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
241 242 5.344743 AATGATCAGTACGTCCAACATCT 57.655 39.130 0.09 0.00 0.00 2.90
261 262 4.040461 ACTGTCGCACCCATAATAGCTAAT 59.960 41.667 0.00 0.00 0.00 1.73
334 335 0.968901 TCGGGCGGTGTTACTCATCT 60.969 55.000 0.00 0.00 0.00 2.90
343 344 4.309950 GTCCAAGTCGGGCGGTGT 62.310 66.667 0.00 0.00 34.36 4.16
399 400 1.664649 GGTTTTTGGGAAGCGCTGC 60.665 57.895 12.58 9.65 0.00 5.25
565 567 1.956170 GCGGCCATAGACACATCGG 60.956 63.158 2.24 0.00 0.00 4.18
568 570 1.524621 GCTGCGGCCATAGACACAT 60.525 57.895 6.12 0.00 0.00 3.21
642 644 6.449698 ACGAATTAGAAACCGAGTCAGTTTA 58.550 36.000 4.46 0.00 37.55 2.01
647 649 7.325660 AGTATACGAATTAGAAACCGAGTCA 57.674 36.000 0.00 0.00 0.00 3.41
733 743 2.046988 CCACATGTGCTCGCCTCA 60.047 61.111 20.81 0.00 0.00 3.86
734 744 1.237285 AAACCACATGTGCTCGCCTC 61.237 55.000 20.81 0.00 0.00 4.70
743 753 3.214328 AGAGAAAGCGAAAACCACATGT 58.786 40.909 0.00 0.00 0.00 3.21
744 754 3.904136 AGAGAAAGCGAAAACCACATG 57.096 42.857 0.00 0.00 0.00 3.21
745 755 4.137543 AGAAGAGAAAGCGAAAACCACAT 58.862 39.130 0.00 0.00 0.00 3.21
755 769 1.795286 GGTGTGTGAGAAGAGAAAGCG 59.205 52.381 0.00 0.00 0.00 4.68
756 770 2.545946 GTGGTGTGTGAGAAGAGAAAGC 59.454 50.000 0.00 0.00 0.00 3.51
777 791 2.498078 GGGTTCTCTCCACCACTCTAAG 59.502 54.545 0.00 0.00 35.80 2.18
789 803 7.039574 GGACCTCTTTATATAGTGGGTTCTCTC 60.040 44.444 13.64 3.72 33.97 3.20
818 832 4.080015 TCCCACTTGGAAGTTGAAGAAGAA 60.080 41.667 0.00 0.00 41.40 2.52
864 879 6.662865 TCTCAAAGCCCATTTGTAAAATGA 57.337 33.333 13.04 0.00 46.96 2.57
874 889 6.616237 ATTTCTGAAATCTCAAAGCCCATT 57.384 33.333 9.76 0.00 0.00 3.16
887 902 4.292643 AGGCCCATAGCAATTTCTGAAAT 58.707 39.130 9.76 9.76 46.50 2.17
972 987 3.102107 CTCTGAGCCGTCGGTCGAG 62.102 68.421 13.94 14.27 42.86 4.04
977 992 2.279120 GATGCTCTGAGCCGTCGG 60.279 66.667 25.61 6.99 41.51 4.79
1140 1155 2.792947 GCGACCGAATAGCCCCTGA 61.793 63.158 0.00 0.00 0.00 3.86
1216 1231 4.740822 GCCTGTGAACGGCCCCAT 62.741 66.667 0.00 0.00 41.73 4.00
1326 1341 2.750237 GGGTTCCCATGCGTCCAC 60.750 66.667 2.59 0.00 0.00 4.02
1335 1350 2.538141 CCAGAAGGCAGGGTTCCCA 61.538 63.158 10.73 0.00 0.00 4.37
1392 1407 2.224719 GGAGCAATGATGGTAGCCTCAT 60.225 50.000 6.85 6.85 37.41 2.90
1421 1437 0.808755 AAAATGGATCGGCGACAACC 59.191 50.000 13.76 16.72 0.00 3.77
1814 1833 6.417339 CACACGATCAGACATGATAGAGAAAG 59.583 42.308 0.00 0.00 46.39 2.62
1941 1960 4.595538 TCACGGTTGCTCGGCGTT 62.596 61.111 6.85 0.00 0.00 4.84
1998 2017 2.507102 CGTCCATCGCGCTCAACT 60.507 61.111 5.56 0.00 0.00 3.16
2048 2072 2.090524 CGTCGTTCTTACACGGCCC 61.091 63.158 0.00 0.00 41.90 5.80
2050 2074 0.386478 AGTCGTCGTTCTTACACGGC 60.386 55.000 0.00 0.00 41.49 5.68
2068 2092 0.034896 AGTGCCGGAACTTGGTGTAG 59.965 55.000 10.19 0.00 0.00 2.74
2109 2133 4.015084 ACAGAAAGCCTTCAATGGATCAG 58.985 43.478 0.00 0.00 33.64 2.90
2117 2141 0.555769 ACCCCACAGAAAGCCTTCAA 59.444 50.000 0.00 0.00 33.64 2.69
2123 2147 2.355209 CCTTCTCTACCCCACAGAAAGC 60.355 54.545 0.00 0.00 0.00 3.51
2137 2161 1.337118 GCGATCCTCCATCCTTCTCT 58.663 55.000 0.00 0.00 0.00 3.10
2150 2174 0.321122 GATCACTCCATGGGCGATCC 60.321 60.000 19.99 8.84 0.00 3.36
2151 2175 0.668706 CGATCACTCCATGGGCGATC 60.669 60.000 20.42 20.42 0.00 3.69
2152 2176 1.115326 TCGATCACTCCATGGGCGAT 61.115 55.000 13.02 11.30 32.05 4.58
2155 2179 0.179000 AGTTCGATCACTCCATGGGC 59.821 55.000 13.02 0.00 0.00 5.36
2164 2188 1.698165 TGACTTGCGAGTTCGATCAC 58.302 50.000 8.34 0.00 43.02 3.06
2176 2200 2.030805 AGGCGAAGTGAAATTGACTTGC 60.031 45.455 1.92 6.84 33.71 4.01
2229 2253 3.369576 GCTCTTTCCTTGACGGATTACCT 60.370 47.826 0.00 0.00 42.70 3.08
2249 2273 7.516198 AACTTCACACTCAAAGATAAATGCT 57.484 32.000 0.00 0.00 0.00 3.79
2268 2292 5.500645 AACTGCAGGTTTTGACTAACTTC 57.499 39.130 19.93 0.00 33.90 3.01
2274 2298 2.914059 ACGTAACTGCAGGTTTTGACT 58.086 42.857 19.93 0.00 39.17 3.41
2325 2349 8.496751 GCGTACAAAGAAGAAACTAAGAAAGAT 58.503 33.333 0.00 0.00 0.00 2.40
2326 2350 7.042254 GGCGTACAAAGAAGAAACTAAGAAAGA 60.042 37.037 0.00 0.00 0.00 2.52
2327 2351 7.070183 GGCGTACAAAGAAGAAACTAAGAAAG 58.930 38.462 0.00 0.00 0.00 2.62
2328 2352 6.017687 GGGCGTACAAAGAAGAAACTAAGAAA 60.018 38.462 0.00 0.00 0.00 2.52
2329 2353 5.467735 GGGCGTACAAAGAAGAAACTAAGAA 59.532 40.000 0.00 0.00 0.00 2.52
2330 2354 4.992951 GGGCGTACAAAGAAGAAACTAAGA 59.007 41.667 0.00 0.00 0.00 2.10
2331 2355 4.995487 AGGGCGTACAAAGAAGAAACTAAG 59.005 41.667 0.00 0.00 0.00 2.18
2332 2356 4.964593 AGGGCGTACAAAGAAGAAACTAA 58.035 39.130 0.00 0.00 0.00 2.24
2333 2357 4.562143 GGAGGGCGTACAAAGAAGAAACTA 60.562 45.833 0.00 0.00 0.00 2.24
2334 2358 3.400255 GAGGGCGTACAAAGAAGAAACT 58.600 45.455 0.00 0.00 0.00 2.66
2335 2359 2.483106 GGAGGGCGTACAAAGAAGAAAC 59.517 50.000 0.00 0.00 0.00 2.78
2336 2360 2.551504 GGGAGGGCGTACAAAGAAGAAA 60.552 50.000 0.00 0.00 0.00 2.52
2337 2361 1.002773 GGGAGGGCGTACAAAGAAGAA 59.997 52.381 0.00 0.00 0.00 2.52
2338 2362 0.611714 GGGAGGGCGTACAAAGAAGA 59.388 55.000 0.00 0.00 0.00 2.87
2339 2363 0.392595 GGGGAGGGCGTACAAAGAAG 60.393 60.000 0.00 0.00 0.00 2.85
2340 2364 1.681076 GGGGAGGGCGTACAAAGAA 59.319 57.895 0.00 0.00 0.00 2.52
2341 2365 3.395630 GGGGAGGGCGTACAAAGA 58.604 61.111 0.00 0.00 0.00 2.52
2779 2803 9.778741 TCTCTACTTTGTGTCATTGATTAACTT 57.221 29.630 0.00 0.00 0.00 2.66
2780 2804 9.778741 TTCTCTACTTTGTGTCATTGATTAACT 57.221 29.630 0.00 0.00 0.00 2.24
2781 2805 9.813080 GTTCTCTACTTTGTGTCATTGATTAAC 57.187 33.333 0.00 0.00 0.00 2.01
2782 2806 8.708742 CGTTCTCTACTTTGTGTCATTGATTAA 58.291 33.333 0.00 0.00 0.00 1.40
2783 2807 7.330946 CCGTTCTCTACTTTGTGTCATTGATTA 59.669 37.037 0.00 0.00 0.00 1.75
2784 2808 6.147821 CCGTTCTCTACTTTGTGTCATTGATT 59.852 38.462 0.00 0.00 0.00 2.57
2785 2809 5.639506 CCGTTCTCTACTTTGTGTCATTGAT 59.360 40.000 0.00 0.00 0.00 2.57
2786 2810 4.988540 CCGTTCTCTACTTTGTGTCATTGA 59.011 41.667 0.00 0.00 0.00 2.57
2787 2811 4.988540 TCCGTTCTCTACTTTGTGTCATTG 59.011 41.667 0.00 0.00 0.00 2.82
2788 2812 4.989168 GTCCGTTCTCTACTTTGTGTCATT 59.011 41.667 0.00 0.00 0.00 2.57
2789 2813 4.557205 GTCCGTTCTCTACTTTGTGTCAT 58.443 43.478 0.00 0.00 0.00 3.06
2790 2814 3.549423 CGTCCGTTCTCTACTTTGTGTCA 60.549 47.826 0.00 0.00 0.00 3.58
2791 2815 2.978489 CGTCCGTTCTCTACTTTGTGTC 59.022 50.000 0.00 0.00 0.00 3.67
2792 2816 2.360165 ACGTCCGTTCTCTACTTTGTGT 59.640 45.455 0.00 0.00 0.00 3.72
2793 2817 3.009301 ACGTCCGTTCTCTACTTTGTG 57.991 47.619 0.00 0.00 0.00 3.33
2794 2818 3.722728 AACGTCCGTTCTCTACTTTGT 57.277 42.857 0.00 0.00 32.09 2.83
2795 2819 3.183775 CCAAACGTCCGTTCTCTACTTTG 59.816 47.826 5.44 0.00 37.35 2.77
2796 2820 3.387397 CCAAACGTCCGTTCTCTACTTT 58.613 45.455 5.44 0.00 37.35 2.66
2797 2821 2.865276 GCCAAACGTCCGTTCTCTACTT 60.865 50.000 5.44 0.00 37.35 2.24
2798 2822 1.336609 GCCAAACGTCCGTTCTCTACT 60.337 52.381 5.44 0.00 37.35 2.57
2799 2823 1.066136 GCCAAACGTCCGTTCTCTAC 58.934 55.000 5.44 0.00 37.35 2.59
2800 2824 0.963962 AGCCAAACGTCCGTTCTCTA 59.036 50.000 5.44 0.00 37.35 2.43
2801 2825 0.319641 GAGCCAAACGTCCGTTCTCT 60.320 55.000 5.44 3.63 37.35 3.10
2802 2826 1.289800 GGAGCCAAACGTCCGTTCTC 61.290 60.000 5.44 8.11 37.35 2.87
2803 2827 1.301479 GGAGCCAAACGTCCGTTCT 60.301 57.895 5.44 0.00 37.35 3.01
2804 2828 2.322830 GGGAGCCAAACGTCCGTTC 61.323 63.158 5.44 0.00 37.35 3.95
2805 2829 2.281276 GGGAGCCAAACGTCCGTT 60.281 61.111 0.00 0.00 40.45 4.44
2806 2830 4.675029 CGGGAGCCAAACGTCCGT 62.675 66.667 1.73 0.00 35.14 4.69
2818 2842 3.554342 CTCCATGGAGGCCGGGAG 61.554 72.222 31.14 6.42 39.89 4.30
2826 2850 2.239654 TCAGTAAAAGGCCTCCATGGAG 59.760 50.000 31.69 31.69 41.63 3.86
2827 2851 2.274542 TCAGTAAAAGGCCTCCATGGA 58.725 47.619 15.27 15.27 38.35 3.41
2828 2852 2.806945 TCAGTAAAAGGCCTCCATGG 57.193 50.000 5.23 4.97 39.35 3.66
2829 2853 4.280677 TGTTTTCAGTAAAAGGCCTCCATG 59.719 41.667 5.23 0.93 35.29 3.66
2830 2854 4.479158 TGTTTTCAGTAAAAGGCCTCCAT 58.521 39.130 5.23 0.00 35.29 3.41
2831 2855 3.904717 TGTTTTCAGTAAAAGGCCTCCA 58.095 40.909 5.23 0.00 35.29 3.86
2832 2856 4.929819 TTGTTTTCAGTAAAAGGCCTCC 57.070 40.909 5.23 0.00 35.29 4.30
2833 2857 6.512297 TGATTTGTTTTCAGTAAAAGGCCTC 58.488 36.000 5.23 0.00 35.29 4.70
2834 2858 6.478512 TGATTTGTTTTCAGTAAAAGGCCT 57.521 33.333 0.00 0.00 35.29 5.19
2835 2859 7.546778 TTTGATTTGTTTTCAGTAAAAGGCC 57.453 32.000 0.00 0.00 35.29 5.19
2894 2918 5.130311 ACCTCCCTGTTTACTTGCAATTTTT 59.870 36.000 0.00 0.00 0.00 1.94
2895 2919 4.653801 ACCTCCCTGTTTACTTGCAATTTT 59.346 37.500 0.00 0.00 0.00 1.82
2896 2920 4.223144 ACCTCCCTGTTTACTTGCAATTT 58.777 39.130 0.00 0.00 0.00 1.82
2897 2921 3.844640 ACCTCCCTGTTTACTTGCAATT 58.155 40.909 0.00 0.00 0.00 2.32
2898 2922 3.525800 ACCTCCCTGTTTACTTGCAAT 57.474 42.857 0.00 0.00 0.00 3.56
2899 2923 3.306472 AACCTCCCTGTTTACTTGCAA 57.694 42.857 0.00 0.00 0.00 4.08
2900 2924 4.331968 CATAACCTCCCTGTTTACTTGCA 58.668 43.478 0.00 0.00 0.00 4.08
2901 2925 3.128764 GCATAACCTCCCTGTTTACTTGC 59.871 47.826 0.00 0.00 0.00 4.01
2902 2926 3.374058 CGCATAACCTCCCTGTTTACTTG 59.626 47.826 0.00 0.00 0.00 3.16
2903 2927 3.008704 ACGCATAACCTCCCTGTTTACTT 59.991 43.478 0.00 0.00 0.00 2.24
2904 2928 2.570302 ACGCATAACCTCCCTGTTTACT 59.430 45.455 0.00 0.00 0.00 2.24
2905 2929 2.981898 ACGCATAACCTCCCTGTTTAC 58.018 47.619 0.00 0.00 0.00 2.01
2906 2930 4.162698 ACATACGCATAACCTCCCTGTTTA 59.837 41.667 0.00 0.00 0.00 2.01
2907 2931 3.054655 ACATACGCATAACCTCCCTGTTT 60.055 43.478 0.00 0.00 0.00 2.83
2908 2932 2.504175 ACATACGCATAACCTCCCTGTT 59.496 45.455 0.00 0.00 0.00 3.16
2909 2933 2.116238 ACATACGCATAACCTCCCTGT 58.884 47.619 0.00 0.00 0.00 4.00
2910 2934 2.158957 ACACATACGCATAACCTCCCTG 60.159 50.000 0.00 0.00 0.00 4.45
2911 2935 2.116238 ACACATACGCATAACCTCCCT 58.884 47.619 0.00 0.00 0.00 4.20
2912 2936 2.614829 ACACATACGCATAACCTCCC 57.385 50.000 0.00 0.00 0.00 4.30
2913 2937 7.718272 TTTTATACACATACGCATAACCTCC 57.282 36.000 0.00 0.00 0.00 4.30
2914 2938 9.807386 GAATTTTATACACATACGCATAACCTC 57.193 33.333 0.00 0.00 0.00 3.85
2915 2939 9.332502 TGAATTTTATACACATACGCATAACCT 57.667 29.630 0.00 0.00 0.00 3.50
2916 2940 9.594038 CTGAATTTTATACACATACGCATAACC 57.406 33.333 0.00 0.00 0.00 2.85
2917 2941 9.594038 CCTGAATTTTATACACATACGCATAAC 57.406 33.333 0.00 0.00 0.00 1.89
2918 2942 9.549078 TCCTGAATTTTATACACATACGCATAA 57.451 29.630 0.00 0.00 0.00 1.90
2919 2943 9.719355 ATCCTGAATTTTATACACATACGCATA 57.281 29.630 0.00 0.00 0.00 3.14
2920 2944 8.506437 CATCCTGAATTTTATACACATACGCAT 58.494 33.333 0.00 0.00 0.00 4.73
2921 2945 7.713073 TCATCCTGAATTTTATACACATACGCA 59.287 33.333 0.00 0.00 0.00 5.24
2922 2946 8.083462 TCATCCTGAATTTTATACACATACGC 57.917 34.615 0.00 0.00 0.00 4.42
2926 2950 9.807649 GCTTTTCATCCTGAATTTTATACACAT 57.192 29.630 0.00 0.00 36.11 3.21
2927 2951 7.967854 CGCTTTTCATCCTGAATTTTATACACA 59.032 33.333 0.00 0.00 36.11 3.72
2928 2952 7.968405 ACGCTTTTCATCCTGAATTTTATACAC 59.032 33.333 0.00 0.00 36.11 2.90
2929 2953 8.050778 ACGCTTTTCATCCTGAATTTTATACA 57.949 30.769 0.00 0.00 36.11 2.29
2930 2954 8.798153 CAACGCTTTTCATCCTGAATTTTATAC 58.202 33.333 0.00 0.00 36.11 1.47
2931 2955 8.735315 TCAACGCTTTTCATCCTGAATTTTATA 58.265 29.630 0.00 0.00 36.11 0.98
2932 2956 7.601856 TCAACGCTTTTCATCCTGAATTTTAT 58.398 30.769 0.00 0.00 36.11 1.40
2933 2957 6.976088 TCAACGCTTTTCATCCTGAATTTTA 58.024 32.000 0.00 0.00 36.11 1.52
2934 2958 5.841810 TCAACGCTTTTCATCCTGAATTTT 58.158 33.333 0.00 0.00 36.11 1.82
2935 2959 5.452078 TCAACGCTTTTCATCCTGAATTT 57.548 34.783 0.00 0.00 36.11 1.82
2936 2960 5.452078 TTCAACGCTTTTCATCCTGAATT 57.548 34.783 0.00 0.00 36.11 2.17
2937 2961 5.452078 TTTCAACGCTTTTCATCCTGAAT 57.548 34.783 0.00 0.00 36.11 2.57
2938 2962 4.909696 TTTCAACGCTTTTCATCCTGAA 57.090 36.364 0.00 0.00 34.03 3.02
2939 2963 4.278170 ACATTTCAACGCTTTTCATCCTGA 59.722 37.500 0.00 0.00 0.00 3.86
2940 2964 4.383649 CACATTTCAACGCTTTTCATCCTG 59.616 41.667 0.00 0.00 0.00 3.86
2941 2965 4.278170 TCACATTTCAACGCTTTTCATCCT 59.722 37.500 0.00 0.00 0.00 3.24
2942 2966 4.382754 GTCACATTTCAACGCTTTTCATCC 59.617 41.667 0.00 0.00 0.00 3.51
2943 2967 4.382754 GGTCACATTTCAACGCTTTTCATC 59.617 41.667 0.00 0.00 0.00 2.92
2944 2968 4.037923 AGGTCACATTTCAACGCTTTTCAT 59.962 37.500 0.00 0.00 0.00 2.57
2945 2969 3.380004 AGGTCACATTTCAACGCTTTTCA 59.620 39.130 0.00 0.00 0.00 2.69
2946 2970 3.730715 CAGGTCACATTTCAACGCTTTTC 59.269 43.478 0.00 0.00 0.00 2.29
2947 2971 3.130340 ACAGGTCACATTTCAACGCTTTT 59.870 39.130 0.00 0.00 0.00 2.27
2948 2972 2.687935 ACAGGTCACATTTCAACGCTTT 59.312 40.909 0.00 0.00 0.00 3.51
2949 2973 2.297701 ACAGGTCACATTTCAACGCTT 58.702 42.857 0.00 0.00 0.00 4.68
2950 2974 1.967319 ACAGGTCACATTTCAACGCT 58.033 45.000 0.00 0.00 0.00 5.07
2951 2975 2.546368 TGTACAGGTCACATTTCAACGC 59.454 45.455 0.00 0.00 0.00 4.84
2952 2976 4.804608 TTGTACAGGTCACATTTCAACG 57.195 40.909 0.00 0.00 0.00 4.10
2973 2997 7.362920 CCTCCGAGACCATGAATTTGTATTTTT 60.363 37.037 0.00 0.00 0.00 1.94
2974 2998 6.095440 CCTCCGAGACCATGAATTTGTATTTT 59.905 38.462 0.00 0.00 0.00 1.82
2975 2999 5.590259 CCTCCGAGACCATGAATTTGTATTT 59.410 40.000 0.00 0.00 0.00 1.40
2976 3000 5.104527 TCCTCCGAGACCATGAATTTGTATT 60.105 40.000 0.00 0.00 0.00 1.89
2977 3001 4.408921 TCCTCCGAGACCATGAATTTGTAT 59.591 41.667 0.00 0.00 0.00 2.29
2978 3002 3.772572 TCCTCCGAGACCATGAATTTGTA 59.227 43.478 0.00 0.00 0.00 2.41
2979 3003 2.571653 TCCTCCGAGACCATGAATTTGT 59.428 45.455 0.00 0.00 0.00 2.83
2980 3004 3.266510 TCCTCCGAGACCATGAATTTG 57.733 47.619 0.00 0.00 0.00 2.32
2981 3005 3.455910 TCATCCTCCGAGACCATGAATTT 59.544 43.478 0.00 0.00 0.00 1.82
2982 3006 3.041211 TCATCCTCCGAGACCATGAATT 58.959 45.455 0.00 0.00 0.00 2.17
2983 3007 2.682594 TCATCCTCCGAGACCATGAAT 58.317 47.619 0.00 0.00 0.00 2.57
2984 3008 2.159179 TCATCCTCCGAGACCATGAA 57.841 50.000 0.00 0.00 0.00 2.57
2985 3009 2.159179 TTCATCCTCCGAGACCATGA 57.841 50.000 0.00 0.00 0.00 3.07
2986 3010 3.576118 ACTATTCATCCTCCGAGACCATG 59.424 47.826 0.00 0.00 0.00 3.66
2987 3011 3.850752 ACTATTCATCCTCCGAGACCAT 58.149 45.455 0.00 0.00 0.00 3.55
2988 3012 3.314307 ACTATTCATCCTCCGAGACCA 57.686 47.619 0.00 0.00 0.00 4.02
2989 3013 5.986501 AATACTATTCATCCTCCGAGACC 57.013 43.478 0.00 0.00 0.00 3.85
2990 3014 6.149142 ACGTAATACTATTCATCCTCCGAGAC 59.851 42.308 0.00 0.00 0.00 3.36
2991 3015 6.148976 CACGTAATACTATTCATCCTCCGAGA 59.851 42.308 0.00 0.00 0.00 4.04
2992 3016 6.072618 ACACGTAATACTATTCATCCTCCGAG 60.073 42.308 0.00 0.00 0.00 4.63
2993 3017 5.766670 ACACGTAATACTATTCATCCTCCGA 59.233 40.000 0.00 0.00 0.00 4.55
2994 3018 6.010294 ACACGTAATACTATTCATCCTCCG 57.990 41.667 0.00 0.00 0.00 4.63
2995 3019 9.754382 TTTAACACGTAATACTATTCATCCTCC 57.246 33.333 0.00 0.00 0.00 4.30
3001 3025 9.439500 AGGCTTTTTAACACGTAATACTATTCA 57.561 29.630 0.00 0.00 0.00 2.57
3002 3026 9.911980 GAGGCTTTTTAACACGTAATACTATTC 57.088 33.333 0.00 0.00 0.00 1.75
3003 3027 9.439500 TGAGGCTTTTTAACACGTAATACTATT 57.561 29.630 0.00 0.00 0.00 1.73
3004 3028 9.095065 CTGAGGCTTTTTAACACGTAATACTAT 57.905 33.333 0.00 0.00 0.00 2.12
3005 3029 8.306038 TCTGAGGCTTTTTAACACGTAATACTA 58.694 33.333 0.00 0.00 0.00 1.82
3006 3030 7.156673 TCTGAGGCTTTTTAACACGTAATACT 58.843 34.615 0.00 0.00 0.00 2.12
3007 3031 7.355332 TCTGAGGCTTTTTAACACGTAATAC 57.645 36.000 0.00 0.00 0.00 1.89
3008 3032 8.556213 AATCTGAGGCTTTTTAACACGTAATA 57.444 30.769 0.00 0.00 0.00 0.98
3009 3033 7.448748 AATCTGAGGCTTTTTAACACGTAAT 57.551 32.000 0.00 0.00 0.00 1.89
3010 3034 6.870971 AATCTGAGGCTTTTTAACACGTAA 57.129 33.333 0.00 0.00 0.00 3.18
3011 3035 6.261381 ACAAATCTGAGGCTTTTTAACACGTA 59.739 34.615 0.00 0.00 0.00 3.57
3012 3036 5.067283 ACAAATCTGAGGCTTTTTAACACGT 59.933 36.000 0.00 0.00 0.00 4.49
3013 3037 5.519722 ACAAATCTGAGGCTTTTTAACACG 58.480 37.500 0.00 0.00 0.00 4.49
3014 3038 6.739112 AGACAAATCTGAGGCTTTTTAACAC 58.261 36.000 0.00 0.00 32.29 3.32
3015 3039 6.959639 AGACAAATCTGAGGCTTTTTAACA 57.040 33.333 0.00 0.00 32.29 2.41
3016 3040 8.648557 AAAAGACAAATCTGAGGCTTTTTAAC 57.351 30.769 3.80 0.00 34.48 2.01
3039 3063 2.433604 TGAAATGAGGGCTGTGCAAAAA 59.566 40.909 0.00 0.00 0.00 1.94
3040 3064 2.037901 TGAAATGAGGGCTGTGCAAAA 58.962 42.857 0.00 0.00 0.00 2.44
3041 3065 1.702182 TGAAATGAGGGCTGTGCAAA 58.298 45.000 0.00 0.00 0.00 3.68
3042 3066 1.340889 GTTGAAATGAGGGCTGTGCAA 59.659 47.619 0.00 0.00 0.00 4.08
3043 3067 0.961019 GTTGAAATGAGGGCTGTGCA 59.039 50.000 0.00 0.00 0.00 4.57
3044 3068 0.961019 TGTTGAAATGAGGGCTGTGC 59.039 50.000 0.00 0.00 0.00 4.57
3045 3069 5.587388 AATATGTTGAAATGAGGGCTGTG 57.413 39.130 0.00 0.00 0.00 3.66
3046 3070 6.400568 CAAAATATGTTGAAATGAGGGCTGT 58.599 36.000 0.00 0.00 0.00 4.40
3047 3071 5.292589 GCAAAATATGTTGAAATGAGGGCTG 59.707 40.000 9.96 0.00 0.00 4.85
3048 3072 5.422145 GCAAAATATGTTGAAATGAGGGCT 58.578 37.500 9.96 0.00 0.00 5.19
3049 3073 4.571984 GGCAAAATATGTTGAAATGAGGGC 59.428 41.667 9.96 0.00 0.00 5.19
3050 3074 5.104817 AGGGCAAAATATGTTGAAATGAGGG 60.105 40.000 9.96 0.00 0.00 4.30
3051 3075 5.813672 CAGGGCAAAATATGTTGAAATGAGG 59.186 40.000 9.96 0.00 0.00 3.86
3052 3076 6.632909 TCAGGGCAAAATATGTTGAAATGAG 58.367 36.000 9.96 0.00 0.00 2.90
3053 3077 6.602410 TCAGGGCAAAATATGTTGAAATGA 57.398 33.333 9.96 6.43 0.00 2.57
3054 3078 7.670009 TTTCAGGGCAAAATATGTTGAAATG 57.330 32.000 9.96 4.30 34.32 2.32
3055 3079 8.866970 ATTTTCAGGGCAAAATATGTTGAAAT 57.133 26.923 9.96 2.92 36.65 2.17
3056 3080 8.688747 AATTTTCAGGGCAAAATATGTTGAAA 57.311 26.923 9.96 0.67 35.35 2.69
3057 3081 8.688747 AAATTTTCAGGGCAAAATATGTTGAA 57.311 26.923 9.96 0.00 35.35 2.69
3058 3082 9.213799 GTAAATTTTCAGGGCAAAATATGTTGA 57.786 29.630 9.96 0.00 35.35 3.18
3059 3083 8.997323 TGTAAATTTTCAGGGCAAAATATGTTG 58.003 29.630 0.81 0.81 35.35 3.33
3060 3084 8.998377 GTGTAAATTTTCAGGGCAAAATATGTT 58.002 29.630 0.00 0.00 35.35 2.71
3061 3085 7.330700 CGTGTAAATTTTCAGGGCAAAATATGT 59.669 33.333 9.00 0.00 35.35 2.29
3062 3086 7.673776 GCGTGTAAATTTTCAGGGCAAAATATG 60.674 37.037 16.11 0.00 35.35 1.78
3063 3087 6.312672 GCGTGTAAATTTTCAGGGCAAAATAT 59.687 34.615 16.11 0.00 35.35 1.28
3064 3088 5.635700 GCGTGTAAATTTTCAGGGCAAAATA 59.364 36.000 16.11 0.00 35.35 1.40
3065 3089 4.450757 GCGTGTAAATTTTCAGGGCAAAAT 59.549 37.500 16.11 0.00 37.53 1.82
3066 3090 3.804873 GCGTGTAAATTTTCAGGGCAAAA 59.195 39.130 16.11 0.00 0.00 2.44
3067 3091 3.385577 GCGTGTAAATTTTCAGGGCAAA 58.614 40.909 16.11 0.00 0.00 3.68
3068 3092 2.605823 CGCGTGTAAATTTTCAGGGCAA 60.606 45.455 16.11 0.00 0.00 4.52
3069 3093 1.068885 CGCGTGTAAATTTTCAGGGCA 60.069 47.619 16.11 0.00 0.00 5.36
3070 3094 1.068816 ACGCGTGTAAATTTTCAGGGC 60.069 47.619 12.93 12.67 0.00 5.19
3071 3095 2.031508 ACACGCGTGTAAATTTTCAGGG 60.032 45.455 41.14 12.53 42.90 4.45
3072 3096 2.970609 CACACGCGTGTAAATTTTCAGG 59.029 45.455 41.12 22.44 42.83 3.86
3085 3109 0.882927 AAGGCATAACACACACGCGT 60.883 50.000 5.58 5.58 0.00 6.01
3086 3110 0.179225 GAAGGCATAACACACACGCG 60.179 55.000 3.53 3.53 0.00 6.01
3087 3111 0.871722 TGAAGGCATAACACACACGC 59.128 50.000 0.00 0.00 0.00 5.34
3088 3112 2.483877 ACATGAAGGCATAACACACACG 59.516 45.455 0.00 0.00 32.27 4.49
3089 3113 5.818136 ATACATGAAGGCATAACACACAC 57.182 39.130 0.00 0.00 32.27 3.82
3090 3114 7.442062 CAGATATACATGAAGGCATAACACACA 59.558 37.037 0.00 0.00 32.27 3.72
3091 3115 7.442364 ACAGATATACATGAAGGCATAACACAC 59.558 37.037 0.00 0.00 32.27 3.82
3092 3116 7.508687 ACAGATATACATGAAGGCATAACACA 58.491 34.615 0.00 0.00 32.27 3.72
3093 3117 7.969536 ACAGATATACATGAAGGCATAACAC 57.030 36.000 0.00 0.00 32.27 3.32
3137 3161 9.743057 TCGTCAAATTTCATATTTTCTGTGTTT 57.257 25.926 0.00 0.00 0.00 2.83
3138 3162 9.180678 GTCGTCAAATTTCATATTTTCTGTGTT 57.819 29.630 0.00 0.00 0.00 3.32
3139 3163 8.349245 TGTCGTCAAATTTCATATTTTCTGTGT 58.651 29.630 0.00 0.00 0.00 3.72
3140 3164 8.726650 TGTCGTCAAATTTCATATTTTCTGTG 57.273 30.769 0.00 0.00 0.00 3.66
3141 3165 9.912634 AATGTCGTCAAATTTCATATTTTCTGT 57.087 25.926 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.