Multiple sequence alignment - TraesCS6B01G326600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G326600 chr6B 100.000 3437 0 0 1 3437 576208736 576205300 0.000000e+00 6348
1 TraesCS6B01G326600 chr6D 93.336 2341 102 21 571 2890 385701274 385698967 0.000000e+00 3410
2 TraesCS6B01G326600 chr6A 93.626 1914 80 17 692 2588 530217803 530215915 0.000000e+00 2820
3 TraesCS6B01G326600 chr6A 84.278 547 71 10 2895 3437 162916884 162917419 1.410000e-143 520
4 TraesCS6B01G326600 chr1B 96.496 371 13 0 3 373 6249983 6250353 6.300000e-172 614
5 TraesCS6B01G326600 chr1B 96.206 369 14 0 3 371 72711327 72711695 3.790000e-169 604
6 TraesCS6B01G326600 chr1B 95.957 371 14 1 3 372 72803939 72804309 4.910000e-168 601
7 TraesCS6B01G326600 chr4B 95.957 371 14 1 3 372 81362706 81362336 4.910000e-168 601
8 TraesCS6B01G326600 chr4B 83.510 473 72 5 2970 3437 467806033 467806504 1.460000e-118 436
9 TraesCS6B01G326600 chr2D 95.699 372 15 1 3 373 582187261 582187632 6.350000e-167 597
10 TraesCS6B01G326600 chr4A 95.664 369 15 1 3 371 728114661 728114294 2.950000e-165 592
11 TraesCS6B01G326600 chr4A 84.086 465 69 4 2973 3433 83395778 83395315 8.750000e-121 444
12 TraesCS6B01G326600 chr1A 95.418 371 17 0 3 373 590349783 590350153 2.950000e-165 592
13 TraesCS6B01G326600 chr1A 89.062 128 13 1 443 570 33380786 33380912 1.280000e-34 158
14 TraesCS6B01G326600 chr1D 95.187 374 17 1 3 376 486402458 486402830 1.060000e-164 590
15 TraesCS6B01G326600 chr2B 94.906 373 19 0 3 375 202911189 202911561 4.940000e-163 584
16 TraesCS6B01G326600 chr5D 84.268 553 77 8 2892 3437 210795368 210794819 6.530000e-147 531
17 TraesCS6B01G326600 chr5B 85.193 466 63 6 2909 3370 224339095 224338632 1.120000e-129 473
18 TraesCS6B01G326600 chr5A 83.784 481 70 4 2960 3437 473614808 473615283 1.880000e-122 449
19 TraesCS6B01G326600 chr3D 83.948 461 69 4 2981 3437 113670445 113670904 1.460000e-118 436
20 TraesCS6B01G326600 chr3D 82.906 468 73 6 2975 3437 64346685 64346220 6.860000e-112 414
21 TraesCS6B01G326600 chr7B 82.942 469 60 10 2973 3437 664075617 664075165 4.130000e-109 405


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G326600 chr6B 576205300 576208736 3436 True 6348 6348 100.000 1 3437 1 chr6B.!!$R1 3436
1 TraesCS6B01G326600 chr6D 385698967 385701274 2307 True 3410 3410 93.336 571 2890 1 chr6D.!!$R1 2319
2 TraesCS6B01G326600 chr6A 530215915 530217803 1888 True 2820 2820 93.626 692 2588 1 chr6A.!!$R1 1896
3 TraesCS6B01G326600 chr6A 162916884 162917419 535 False 520 520 84.278 2895 3437 1 chr6A.!!$F1 542
4 TraesCS6B01G326600 chr5D 210794819 210795368 549 True 531 531 84.268 2892 3437 1 chr5D.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.036765 CCCCGGTCTGATTCGTTCAA 60.037 55.0 0.00 0.0 32.78 2.69 F
512 513 0.109723 GGGGTGTGTGCAGGAAACTA 59.890 55.0 0.00 0.0 40.21 2.24 F
1173 1183 0.530650 ATCTTGATCCGCACGCGAAT 60.531 50.0 15.93 0.0 42.83 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2095 0.326238 AGAACTCCCCGCCCTTATCA 60.326 55.000 0.0 0.0 0.0 2.15 R
2379 2407 1.066858 CCAGCAGCCGTCTTCTTCTTA 60.067 52.381 0.0 0.0 0.0 2.10 R
2618 2647 0.179067 GGGTCGTGTGTTGGAGTTGA 60.179 55.000 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.515602 ATGGCAGATATGGTTTCCTCC 57.484 47.619 0.00 0.00 0.00 4.30
23 24 2.492025 TGGCAGATATGGTTTCCTCCT 58.508 47.619 0.00 0.00 0.00 3.69
24 25 2.852449 TGGCAGATATGGTTTCCTCCTT 59.148 45.455 0.00 0.00 0.00 3.36
25 26 3.117888 TGGCAGATATGGTTTCCTCCTTC 60.118 47.826 0.00 0.00 0.00 3.46
26 27 3.134458 GCAGATATGGTTTCCTCCTTCG 58.866 50.000 0.00 0.00 0.00 3.79
27 28 3.733337 CAGATATGGTTTCCTCCTTCGG 58.267 50.000 0.00 0.00 0.00 4.30
28 29 2.104963 AGATATGGTTTCCTCCTTCGGC 59.895 50.000 0.00 0.00 0.00 5.54
29 30 0.177141 TATGGTTTCCTCCTTCGGCG 59.823 55.000 0.00 0.00 0.00 6.46
30 31 1.838073 ATGGTTTCCTCCTTCGGCGT 61.838 55.000 6.85 0.00 0.00 5.68
31 32 1.302271 GGTTTCCTCCTTCGGCGTT 60.302 57.895 6.85 0.00 0.00 4.84
32 33 0.887836 GGTTTCCTCCTTCGGCGTTT 60.888 55.000 6.85 0.00 0.00 3.60
33 34 0.949397 GTTTCCTCCTTCGGCGTTTT 59.051 50.000 6.85 0.00 0.00 2.43
34 35 2.145536 GTTTCCTCCTTCGGCGTTTTA 58.854 47.619 6.85 0.00 0.00 1.52
35 36 2.088950 TTCCTCCTTCGGCGTTTTAG 57.911 50.000 6.85 0.84 0.00 1.85
36 37 0.971386 TCCTCCTTCGGCGTTTTAGT 59.029 50.000 6.85 0.00 0.00 2.24
37 38 1.067354 TCCTCCTTCGGCGTTTTAGTC 60.067 52.381 6.85 0.00 0.00 2.59
38 39 0.989890 CTCCTTCGGCGTTTTAGTCG 59.010 55.000 6.85 0.00 41.09 4.18
39 40 0.314935 TCCTTCGGCGTTTTAGTCGT 59.685 50.000 6.85 0.00 40.52 4.34
40 41 0.437295 CCTTCGGCGTTTTAGTCGTG 59.563 55.000 6.85 0.00 40.52 4.35
41 42 0.437295 CTTCGGCGTTTTAGTCGTGG 59.563 55.000 6.85 0.00 40.52 4.94
42 43 0.249405 TTCGGCGTTTTAGTCGTGGT 60.249 50.000 6.85 0.00 40.52 4.16
43 44 0.940519 TCGGCGTTTTAGTCGTGGTG 60.941 55.000 6.85 0.00 40.52 4.17
44 45 1.864176 GGCGTTTTAGTCGTGGTGG 59.136 57.895 0.00 0.00 0.00 4.61
45 46 0.881600 GGCGTTTTAGTCGTGGTGGT 60.882 55.000 0.00 0.00 0.00 4.16
46 47 1.605202 GGCGTTTTAGTCGTGGTGGTA 60.605 52.381 0.00 0.00 0.00 3.25
47 48 2.340337 GCGTTTTAGTCGTGGTGGTAT 58.660 47.619 0.00 0.00 0.00 2.73
48 49 2.093152 GCGTTTTAGTCGTGGTGGTATG 59.907 50.000 0.00 0.00 0.00 2.39
49 50 2.093152 CGTTTTAGTCGTGGTGGTATGC 59.907 50.000 0.00 0.00 0.00 3.14
50 51 3.332034 GTTTTAGTCGTGGTGGTATGCT 58.668 45.455 0.00 0.00 0.00 3.79
51 52 4.497300 GTTTTAGTCGTGGTGGTATGCTA 58.503 43.478 0.00 0.00 0.00 3.49
52 53 4.380841 TTTAGTCGTGGTGGTATGCTAG 57.619 45.455 0.00 0.00 0.00 3.42
53 54 2.139323 AGTCGTGGTGGTATGCTAGA 57.861 50.000 0.00 0.00 0.00 2.43
54 55 2.667470 AGTCGTGGTGGTATGCTAGAT 58.333 47.619 0.00 0.00 0.00 1.98
55 56 2.623889 AGTCGTGGTGGTATGCTAGATC 59.376 50.000 0.00 0.00 0.00 2.75
56 57 2.623889 GTCGTGGTGGTATGCTAGATCT 59.376 50.000 0.00 0.00 0.00 2.75
57 58 2.623416 TCGTGGTGGTATGCTAGATCTG 59.377 50.000 5.18 0.00 0.00 2.90
58 59 2.288457 CGTGGTGGTATGCTAGATCTGG 60.288 54.545 5.18 2.94 0.00 3.86
59 60 2.965831 GTGGTGGTATGCTAGATCTGGA 59.034 50.000 10.75 0.00 0.00 3.86
60 61 3.006323 GTGGTGGTATGCTAGATCTGGAG 59.994 52.174 10.75 0.00 0.00 3.86
61 62 3.235200 GGTGGTATGCTAGATCTGGAGT 58.765 50.000 10.75 0.00 0.00 3.85
62 63 3.643792 GGTGGTATGCTAGATCTGGAGTT 59.356 47.826 10.75 0.00 0.00 3.01
63 64 4.262249 GGTGGTATGCTAGATCTGGAGTTC 60.262 50.000 10.75 0.00 0.00 3.01
64 65 3.570125 TGGTATGCTAGATCTGGAGTTCG 59.430 47.826 10.75 0.00 0.00 3.95
65 66 3.821600 GGTATGCTAGATCTGGAGTTCGA 59.178 47.826 10.75 0.00 0.00 3.71
66 67 4.461081 GGTATGCTAGATCTGGAGTTCGAT 59.539 45.833 10.75 0.00 0.00 3.59
67 68 3.998099 TGCTAGATCTGGAGTTCGATG 57.002 47.619 10.75 0.00 0.00 3.84
68 69 2.625314 TGCTAGATCTGGAGTTCGATGG 59.375 50.000 10.75 0.00 0.00 3.51
69 70 2.609244 GCTAGATCTGGAGTTCGATGGC 60.609 54.545 10.75 0.00 0.00 4.40
70 71 0.387202 AGATCTGGAGTTCGATGGCG 59.613 55.000 0.00 0.00 39.35 5.69
71 72 0.103208 GATCTGGAGTTCGATGGCGT 59.897 55.000 0.00 0.00 38.98 5.68
72 73 0.179100 ATCTGGAGTTCGATGGCGTG 60.179 55.000 0.00 0.00 38.98 5.34
73 74 1.079819 CTGGAGTTCGATGGCGTGT 60.080 57.895 0.00 0.00 38.98 4.49
74 75 1.078759 CTGGAGTTCGATGGCGTGTC 61.079 60.000 0.00 0.00 38.98 3.67
75 76 1.810030 GGAGTTCGATGGCGTGTCC 60.810 63.158 0.00 0.00 38.98 4.02
76 77 2.126071 AGTTCGATGGCGTGTCCG 60.126 61.111 0.00 0.00 38.98 4.79
77 78 3.186047 GTTCGATGGCGTGTCCGG 61.186 66.667 0.00 0.00 38.98 5.14
78 79 4.444838 TTCGATGGCGTGTCCGGG 62.445 66.667 0.00 0.00 38.98 5.73
95 96 3.948719 GGTGTTGCCCCGGTCTGA 61.949 66.667 0.00 0.00 0.00 3.27
96 97 2.351276 GTGTTGCCCCGGTCTGAT 59.649 61.111 0.00 0.00 0.00 2.90
97 98 1.303317 GTGTTGCCCCGGTCTGATT 60.303 57.895 0.00 0.00 0.00 2.57
98 99 1.002624 TGTTGCCCCGGTCTGATTC 60.003 57.895 0.00 0.00 0.00 2.52
99 100 2.106683 GTTGCCCCGGTCTGATTCG 61.107 63.158 0.00 0.00 0.00 3.34
100 101 2.589157 TTGCCCCGGTCTGATTCGT 61.589 57.895 0.00 0.00 0.00 3.85
101 102 2.119484 TTGCCCCGGTCTGATTCGTT 62.119 55.000 0.00 0.00 0.00 3.85
102 103 1.814169 GCCCCGGTCTGATTCGTTC 60.814 63.158 0.00 0.00 0.00 3.95
103 104 1.594833 CCCCGGTCTGATTCGTTCA 59.405 57.895 0.00 0.00 0.00 3.18
104 105 0.036765 CCCCGGTCTGATTCGTTCAA 60.037 55.000 0.00 0.00 32.78 2.69
105 106 1.076332 CCCGGTCTGATTCGTTCAAC 58.924 55.000 0.00 0.00 32.78 3.18
106 107 0.713883 CCGGTCTGATTCGTTCAACG 59.286 55.000 2.64 2.64 44.19 4.10
107 108 0.713883 CGGTCTGATTCGTTCAACGG 59.286 55.000 10.69 0.00 42.81 4.44
108 109 1.792006 GGTCTGATTCGTTCAACGGT 58.208 50.000 10.69 0.00 42.81 4.83
109 110 2.669113 CGGTCTGATTCGTTCAACGGTA 60.669 50.000 10.69 0.00 42.81 4.02
110 111 3.319755 GGTCTGATTCGTTCAACGGTAA 58.680 45.455 10.69 0.00 42.81 2.85
111 112 3.367025 GGTCTGATTCGTTCAACGGTAAG 59.633 47.826 10.69 2.29 42.81 2.34
112 113 3.367025 GTCTGATTCGTTCAACGGTAAGG 59.633 47.826 10.69 0.00 42.81 2.69
113 114 2.671396 CTGATTCGTTCAACGGTAAGGG 59.329 50.000 10.69 0.00 42.81 3.95
114 115 1.395954 GATTCGTTCAACGGTAAGGGC 59.604 52.381 10.69 0.00 42.81 5.19
115 116 0.393820 TTCGTTCAACGGTAAGGGCT 59.606 50.000 10.69 0.00 42.81 5.19
116 117 0.393820 TCGTTCAACGGTAAGGGCTT 59.606 50.000 10.69 0.00 42.81 4.35
117 118 0.794473 CGTTCAACGGTAAGGGCTTC 59.206 55.000 0.61 0.00 38.08 3.86
118 119 1.874739 CGTTCAACGGTAAGGGCTTCA 60.875 52.381 0.61 0.00 38.08 3.02
119 120 1.534163 GTTCAACGGTAAGGGCTTCAC 59.466 52.381 0.00 0.00 0.00 3.18
120 121 1.053424 TCAACGGTAAGGGCTTCACT 58.947 50.000 0.00 0.00 0.00 3.41
121 122 1.418637 TCAACGGTAAGGGCTTCACTT 59.581 47.619 0.00 0.00 0.00 3.16
122 123 2.158726 TCAACGGTAAGGGCTTCACTTT 60.159 45.455 0.00 0.00 0.00 2.66
123 124 2.621526 CAACGGTAAGGGCTTCACTTTT 59.378 45.455 0.00 0.00 0.00 2.27
124 125 2.227194 ACGGTAAGGGCTTCACTTTTG 58.773 47.619 0.00 0.00 0.00 2.44
125 126 1.539827 CGGTAAGGGCTTCACTTTTGG 59.460 52.381 0.00 0.00 0.00 3.28
126 127 2.594131 GGTAAGGGCTTCACTTTTGGT 58.406 47.619 0.00 0.00 0.00 3.67
127 128 2.296190 GGTAAGGGCTTCACTTTTGGTG 59.704 50.000 0.00 0.00 46.60 4.17
150 151 3.987404 CCTTGGAGGTCCGCAAAG 58.013 61.111 2.76 2.76 39.43 2.77
151 152 1.073199 CCTTGGAGGTCCGCAAAGT 59.927 57.895 8.76 0.00 39.43 2.66
152 153 0.537371 CCTTGGAGGTCCGCAAAGTT 60.537 55.000 8.76 0.00 39.43 2.66
153 154 0.593128 CTTGGAGGTCCGCAAAGTTG 59.407 55.000 1.59 0.00 39.43 3.16
167 168 3.624900 CAAAGTTGCATATCAGCGATGG 58.375 45.455 0.00 0.00 37.31 3.51
168 169 2.916702 AGTTGCATATCAGCGATGGA 57.083 45.000 0.00 0.00 37.31 3.41
169 170 2.763933 AGTTGCATATCAGCGATGGAG 58.236 47.619 0.00 0.00 37.31 3.86
170 171 1.196354 GTTGCATATCAGCGATGGAGC 59.804 52.381 0.00 0.53 37.31 4.70
171 172 0.321034 TGCATATCAGCGATGGAGCC 60.321 55.000 0.00 0.00 38.01 4.70
172 173 1.357258 GCATATCAGCGATGGAGCCG 61.357 60.000 0.00 0.00 38.01 5.52
189 190 4.838486 GCGTCGAGCTCGGGTGAG 62.838 72.222 33.98 20.85 45.49 3.51
190 191 3.125573 CGTCGAGCTCGGGTGAGA 61.126 66.667 33.98 12.67 45.57 3.27
191 192 2.687805 CGTCGAGCTCGGGTGAGAA 61.688 63.158 33.98 11.88 45.57 2.87
192 193 1.137825 GTCGAGCTCGGGTGAGAAG 59.862 63.158 33.98 4.66 45.57 2.85
193 194 2.046864 TCGAGCTCGGGTGAGAAGG 61.047 63.158 33.98 3.88 45.57 3.46
194 195 2.344203 CGAGCTCGGGTGAGAAGGT 61.344 63.158 28.40 0.00 45.57 3.50
195 196 1.216710 GAGCTCGGGTGAGAAGGTG 59.783 63.158 0.00 0.00 45.57 4.00
196 197 1.228894 AGCTCGGGTGAGAAGGTGA 60.229 57.895 0.00 0.00 45.57 4.02
197 198 0.616111 AGCTCGGGTGAGAAGGTGAT 60.616 55.000 0.00 0.00 45.57 3.06
198 199 0.250513 GCTCGGGTGAGAAGGTGATT 59.749 55.000 0.00 0.00 45.57 2.57
199 200 1.339151 GCTCGGGTGAGAAGGTGATTT 60.339 52.381 0.00 0.00 45.57 2.17
200 201 2.350522 CTCGGGTGAGAAGGTGATTTG 58.649 52.381 0.00 0.00 45.57 2.32
201 202 1.697432 TCGGGTGAGAAGGTGATTTGT 59.303 47.619 0.00 0.00 0.00 2.83
202 203 2.076863 CGGGTGAGAAGGTGATTTGTC 58.923 52.381 0.00 0.00 0.00 3.18
203 204 2.549992 CGGGTGAGAAGGTGATTTGTCA 60.550 50.000 0.00 0.00 0.00 3.58
204 205 3.690460 GGGTGAGAAGGTGATTTGTCAT 58.310 45.455 0.00 0.00 33.61 3.06
205 206 4.082125 GGGTGAGAAGGTGATTTGTCATT 58.918 43.478 0.00 0.00 33.61 2.57
206 207 4.156739 GGGTGAGAAGGTGATTTGTCATTC 59.843 45.833 0.00 0.00 33.61 2.67
207 208 5.006386 GGTGAGAAGGTGATTTGTCATTCT 58.994 41.667 0.00 0.00 37.39 2.40
208 209 5.474876 GGTGAGAAGGTGATTTGTCATTCTT 59.525 40.000 0.00 0.00 35.38 2.52
209 210 6.015940 GGTGAGAAGGTGATTTGTCATTCTTT 60.016 38.462 0.00 0.00 35.38 2.52
210 211 7.428826 GTGAGAAGGTGATTTGTCATTCTTTT 58.571 34.615 0.00 0.00 35.38 2.27
211 212 7.592903 GTGAGAAGGTGATTTGTCATTCTTTTC 59.407 37.037 0.00 0.00 35.38 2.29
212 213 7.503566 TGAGAAGGTGATTTGTCATTCTTTTCT 59.496 33.333 11.88 0.00 35.38 2.52
213 214 8.242729 AGAAGGTGATTTGTCATTCTTTTCTT 57.757 30.769 0.00 0.00 32.08 2.52
214 215 8.355913 AGAAGGTGATTTGTCATTCTTTTCTTC 58.644 33.333 0.00 0.00 32.08 2.87
215 216 6.672147 AGGTGATTTGTCATTCTTTTCTTCG 58.328 36.000 0.00 0.00 0.00 3.79
216 217 5.858581 GGTGATTTGTCATTCTTTTCTTCGG 59.141 40.000 0.00 0.00 0.00 4.30
217 218 6.438763 GTGATTTGTCATTCTTTTCTTCGGT 58.561 36.000 0.00 0.00 0.00 4.69
218 219 6.360681 GTGATTTGTCATTCTTTTCTTCGGTG 59.639 38.462 0.00 0.00 0.00 4.94
219 220 4.829064 TTGTCATTCTTTTCTTCGGTGG 57.171 40.909 0.00 0.00 0.00 4.61
220 221 2.552315 TGTCATTCTTTTCTTCGGTGGC 59.448 45.455 0.00 0.00 0.00 5.01
221 222 2.814336 GTCATTCTTTTCTTCGGTGGCT 59.186 45.455 0.00 0.00 0.00 4.75
222 223 4.000988 GTCATTCTTTTCTTCGGTGGCTA 58.999 43.478 0.00 0.00 0.00 3.93
223 224 4.000988 TCATTCTTTTCTTCGGTGGCTAC 58.999 43.478 0.00 0.00 0.00 3.58
224 225 3.764237 TTCTTTTCTTCGGTGGCTACT 57.236 42.857 0.00 0.00 0.00 2.57
225 226 4.877378 TTCTTTTCTTCGGTGGCTACTA 57.123 40.909 0.00 0.00 0.00 1.82
226 227 5.416271 TTCTTTTCTTCGGTGGCTACTAT 57.584 39.130 0.00 0.00 0.00 2.12
227 228 4.755411 TCTTTTCTTCGGTGGCTACTATG 58.245 43.478 0.00 0.00 0.00 2.23
228 229 3.536956 TTTCTTCGGTGGCTACTATGG 57.463 47.619 0.00 0.00 0.00 2.74
229 230 2.154567 TCTTCGGTGGCTACTATGGT 57.845 50.000 0.00 0.00 0.00 3.55
230 231 1.754803 TCTTCGGTGGCTACTATGGTG 59.245 52.381 0.00 0.00 0.00 4.17
231 232 0.828022 TTCGGTGGCTACTATGGTGG 59.172 55.000 0.00 0.00 0.00 4.61
232 233 0.324923 TCGGTGGCTACTATGGTGGT 60.325 55.000 0.00 0.00 0.00 4.16
233 234 0.179084 CGGTGGCTACTATGGTGGTG 60.179 60.000 0.00 0.00 0.00 4.17
234 235 0.463833 GGTGGCTACTATGGTGGTGC 60.464 60.000 0.00 0.00 0.00 5.01
235 236 0.463833 GTGGCTACTATGGTGGTGCC 60.464 60.000 13.12 13.12 37.78 5.01
236 237 1.227556 GGCTACTATGGTGGTGCCG 60.228 63.158 6.88 0.00 41.21 5.69
237 238 1.227556 GCTACTATGGTGGTGCCGG 60.228 63.158 0.00 0.00 41.21 6.13
238 239 1.445942 CTACTATGGTGGTGCCGGG 59.554 63.158 2.18 0.00 41.21 5.73
239 240 2.040009 CTACTATGGTGGTGCCGGGG 62.040 65.000 2.18 0.00 41.21 5.73
240 241 4.189580 CTATGGTGGTGCCGGGGG 62.190 72.222 2.18 0.00 41.21 5.40
256 257 4.012895 GGCAGGTGACGTGCGTTG 62.013 66.667 21.86 0.00 42.19 4.10
257 258 4.012895 GCAGGTGACGTGCGTTGG 62.013 66.667 14.74 0.00 0.00 3.77
258 259 2.587753 CAGGTGACGTGCGTTGGT 60.588 61.111 0.00 0.00 0.00 3.67
259 260 2.587753 AGGTGACGTGCGTTGGTG 60.588 61.111 0.00 0.00 0.00 4.17
260 261 2.893404 GGTGACGTGCGTTGGTGT 60.893 61.111 0.00 0.00 0.00 4.16
261 262 2.624264 GTGACGTGCGTTGGTGTC 59.376 61.111 0.00 0.00 0.00 3.67
262 263 2.168503 GTGACGTGCGTTGGTGTCA 61.169 57.895 0.00 0.00 38.91 3.58
263 264 1.448013 TGACGTGCGTTGGTGTCAA 60.448 52.632 0.00 0.00 38.32 3.18
264 265 1.275657 GACGTGCGTTGGTGTCAAG 59.724 57.895 0.00 0.00 32.92 3.02
265 266 2.052237 CGTGCGTTGGTGTCAAGC 60.052 61.111 0.00 0.00 32.92 4.01
266 267 2.534019 CGTGCGTTGGTGTCAAGCT 61.534 57.895 0.00 0.00 32.92 3.74
267 268 1.279840 GTGCGTTGGTGTCAAGCTC 59.720 57.895 0.00 0.00 32.92 4.09
268 269 1.153269 TGCGTTGGTGTCAAGCTCA 60.153 52.632 0.00 0.00 32.92 4.26
269 270 1.159713 TGCGTTGGTGTCAAGCTCAG 61.160 55.000 0.00 0.00 32.92 3.35
270 271 0.880278 GCGTTGGTGTCAAGCTCAGA 60.880 55.000 0.00 0.00 32.92 3.27
271 272 1.143305 CGTTGGTGTCAAGCTCAGAG 58.857 55.000 0.00 0.00 32.92 3.35
272 273 1.269778 CGTTGGTGTCAAGCTCAGAGA 60.270 52.381 0.00 0.00 32.92 3.10
273 274 2.611473 CGTTGGTGTCAAGCTCAGAGAT 60.611 50.000 0.00 0.00 32.92 2.75
274 275 2.740981 GTTGGTGTCAAGCTCAGAGATG 59.259 50.000 0.00 0.00 32.92 2.90
275 276 1.973515 TGGTGTCAAGCTCAGAGATGT 59.026 47.619 0.00 0.00 0.00 3.06
276 277 2.369860 TGGTGTCAAGCTCAGAGATGTT 59.630 45.455 0.00 0.00 0.00 2.71
277 278 2.999355 GGTGTCAAGCTCAGAGATGTTC 59.001 50.000 0.00 0.00 0.00 3.18
278 279 3.306641 GGTGTCAAGCTCAGAGATGTTCT 60.307 47.826 0.00 0.00 36.25 3.01
291 292 7.236674 CAGAGATGTTCTGCTATCTTTTCAG 57.763 40.000 0.00 0.00 46.30 3.02
292 293 6.817641 CAGAGATGTTCTGCTATCTTTTCAGT 59.182 38.462 0.00 0.00 46.30 3.41
293 294 7.333921 CAGAGATGTTCTGCTATCTTTTCAGTT 59.666 37.037 0.00 0.00 46.30 3.16
294 295 7.882271 AGAGATGTTCTGCTATCTTTTCAGTTT 59.118 33.333 0.00 0.00 33.97 2.66
295 296 8.401490 AGATGTTCTGCTATCTTTTCAGTTTT 57.599 30.769 0.00 0.00 29.64 2.43
296 297 8.295288 AGATGTTCTGCTATCTTTTCAGTTTTG 58.705 33.333 0.00 0.00 29.64 2.44
297 298 7.333528 TGTTCTGCTATCTTTTCAGTTTTGT 57.666 32.000 0.00 0.00 0.00 2.83
298 299 7.417612 TGTTCTGCTATCTTTTCAGTTTTGTC 58.582 34.615 0.00 0.00 0.00 3.18
299 300 7.066887 TGTTCTGCTATCTTTTCAGTTTTGTCA 59.933 33.333 0.00 0.00 0.00 3.58
300 301 7.750229 TCTGCTATCTTTTCAGTTTTGTCAT 57.250 32.000 0.00 0.00 0.00 3.06
301 302 7.587629 TCTGCTATCTTTTCAGTTTTGTCATG 58.412 34.615 0.00 0.00 0.00 3.07
302 303 7.229306 TCTGCTATCTTTTCAGTTTTGTCATGT 59.771 33.333 0.00 0.00 0.00 3.21
303 304 7.362662 TGCTATCTTTTCAGTTTTGTCATGTC 58.637 34.615 0.00 0.00 0.00 3.06
304 305 7.013178 TGCTATCTTTTCAGTTTTGTCATGTCA 59.987 33.333 0.00 0.00 0.00 3.58
305 306 7.536622 GCTATCTTTTCAGTTTTGTCATGTCAG 59.463 37.037 0.00 0.00 0.00 3.51
306 307 6.757897 TCTTTTCAGTTTTGTCATGTCAGT 57.242 33.333 0.00 0.00 0.00 3.41
307 308 6.785191 TCTTTTCAGTTTTGTCATGTCAGTC 58.215 36.000 0.00 0.00 0.00 3.51
308 309 6.599244 TCTTTTCAGTTTTGTCATGTCAGTCT 59.401 34.615 0.00 0.00 0.00 3.24
309 310 6.757897 TTTCAGTTTTGTCATGTCAGTCTT 57.242 33.333 0.00 0.00 0.00 3.01
310 311 6.757897 TTCAGTTTTGTCATGTCAGTCTTT 57.242 33.333 0.00 0.00 0.00 2.52
311 312 7.857734 TTCAGTTTTGTCATGTCAGTCTTTA 57.142 32.000 0.00 0.00 0.00 1.85
312 313 7.246674 TCAGTTTTGTCATGTCAGTCTTTAC 57.753 36.000 0.00 0.00 0.00 2.01
313 314 6.019075 TCAGTTTTGTCATGTCAGTCTTTACG 60.019 38.462 0.00 0.00 0.00 3.18
314 315 5.815740 AGTTTTGTCATGTCAGTCTTTACGT 59.184 36.000 0.00 0.00 0.00 3.57
315 316 5.651172 TTTGTCATGTCAGTCTTTACGTG 57.349 39.130 0.00 0.00 34.57 4.49
316 317 4.577834 TGTCATGTCAGTCTTTACGTGA 57.422 40.909 0.00 3.77 38.87 4.35
318 319 4.848562 TCATGTCAGTCTTTACGTGACT 57.151 40.909 0.00 0.00 44.62 3.41
319 320 5.196341 TCATGTCAGTCTTTACGTGACTT 57.804 39.130 4.40 0.00 42.21 3.01
320 321 5.220381 TCATGTCAGTCTTTACGTGACTTC 58.780 41.667 4.40 2.92 42.21 3.01
321 322 4.913335 TGTCAGTCTTTACGTGACTTCT 57.087 40.909 4.40 0.00 42.21 2.85
322 323 6.206048 TCATGTCAGTCTTTACGTGACTTCTA 59.794 38.462 4.40 0.00 42.21 2.10
323 324 5.755813 TGTCAGTCTTTACGTGACTTCTAC 58.244 41.667 4.40 4.92 42.21 2.59
324 325 5.530171 TGTCAGTCTTTACGTGACTTCTACT 59.470 40.000 4.40 0.00 42.21 2.57
325 326 6.039047 TGTCAGTCTTTACGTGACTTCTACTT 59.961 38.462 4.40 0.00 42.21 2.24
326 327 6.916932 GTCAGTCTTTACGTGACTTCTACTTT 59.083 38.462 4.40 0.00 42.21 2.66
327 328 6.916387 TCAGTCTTTACGTGACTTCTACTTTG 59.084 38.462 4.40 0.00 42.21 2.77
328 329 6.696148 CAGTCTTTACGTGACTTCTACTTTGT 59.304 38.462 4.40 0.00 42.21 2.83
329 330 7.222224 CAGTCTTTACGTGACTTCTACTTTGTT 59.778 37.037 4.40 0.00 42.21 2.83
330 331 7.434602 AGTCTTTACGTGACTTCTACTTTGTTC 59.565 37.037 0.00 0.00 41.45 3.18
331 332 7.434602 GTCTTTACGTGACTTCTACTTTGTTCT 59.565 37.037 0.00 0.00 0.00 3.01
332 333 7.977853 TCTTTACGTGACTTCTACTTTGTTCTT 59.022 33.333 0.00 0.00 0.00 2.52
333 334 8.483307 TTTACGTGACTTCTACTTTGTTCTTT 57.517 30.769 0.00 0.00 0.00 2.52
334 335 9.585099 TTTACGTGACTTCTACTTTGTTCTTTA 57.415 29.630 0.00 0.00 0.00 1.85
335 336 9.754382 TTACGTGACTTCTACTTTGTTCTTTAT 57.246 29.630 0.00 0.00 0.00 1.40
336 337 8.073355 ACGTGACTTCTACTTTGTTCTTTATG 57.927 34.615 0.00 0.00 0.00 1.90
337 338 7.924412 ACGTGACTTCTACTTTGTTCTTTATGA 59.076 33.333 0.00 0.00 0.00 2.15
338 339 8.926710 CGTGACTTCTACTTTGTTCTTTATGAT 58.073 33.333 0.00 0.00 0.00 2.45
352 353 9.034544 TGTTCTTTATGATATGAATGAGACACG 57.965 33.333 0.00 0.00 0.00 4.49
353 354 9.035607 GTTCTTTATGATATGAATGAGACACGT 57.964 33.333 0.00 0.00 0.00 4.49
359 360 8.988064 ATGATATGAATGAGACACGTATTACC 57.012 34.615 0.00 0.00 0.00 2.85
360 361 7.947282 TGATATGAATGAGACACGTATTACCA 58.053 34.615 0.00 0.00 0.00 3.25
361 362 8.585018 TGATATGAATGAGACACGTATTACCAT 58.415 33.333 0.00 0.00 0.00 3.55
362 363 8.763049 ATATGAATGAGACACGTATTACCATG 57.237 34.615 0.00 0.00 0.00 3.66
363 364 6.215495 TGAATGAGACACGTATTACCATGA 57.785 37.500 0.00 0.00 0.00 3.07
364 365 6.635755 TGAATGAGACACGTATTACCATGAA 58.364 36.000 0.00 0.00 0.00 2.57
365 366 7.100409 TGAATGAGACACGTATTACCATGAAA 58.900 34.615 0.00 0.00 0.00 2.69
366 367 7.604545 TGAATGAGACACGTATTACCATGAAAA 59.395 33.333 0.00 0.00 0.00 2.29
367 368 7.915293 ATGAGACACGTATTACCATGAAAAA 57.085 32.000 0.00 0.00 0.00 1.94
389 390 5.529581 AAAAACGAGACAAATGAATGGGT 57.470 34.783 0.00 0.00 0.00 4.51
390 391 4.503741 AAACGAGACAAATGAATGGGTG 57.496 40.909 0.00 0.00 0.00 4.61
391 392 3.140325 ACGAGACAAATGAATGGGTGT 57.860 42.857 0.00 0.00 0.00 4.16
392 393 3.074412 ACGAGACAAATGAATGGGTGTC 58.926 45.455 0.00 0.00 40.56 3.67
396 397 4.728772 AGACAAATGAATGGGTGTCTTCA 58.271 39.130 0.00 0.00 46.57 3.02
397 398 5.327732 AGACAAATGAATGGGTGTCTTCAT 58.672 37.500 0.00 0.00 46.57 2.57
398 399 5.776716 AGACAAATGAATGGGTGTCTTCATT 59.223 36.000 5.02 5.02 46.57 2.57
399 400 5.786311 ACAAATGAATGGGTGTCTTCATTG 58.214 37.500 10.32 7.94 46.24 2.82
400 401 5.539574 ACAAATGAATGGGTGTCTTCATTGA 59.460 36.000 10.32 0.00 46.24 2.57
401 402 6.211986 ACAAATGAATGGGTGTCTTCATTGAT 59.788 34.615 10.32 1.52 46.24 2.57
402 403 6.461110 AATGAATGGGTGTCTTCATTGATC 57.539 37.500 9.11 0.00 45.59 2.92
403 404 3.940852 TGAATGGGTGTCTTCATTGATCG 59.059 43.478 0.00 0.00 34.18 3.69
404 405 3.912496 ATGGGTGTCTTCATTGATCGA 57.088 42.857 0.00 0.00 0.00 3.59
405 406 3.912496 TGGGTGTCTTCATTGATCGAT 57.088 42.857 0.00 0.00 0.00 3.59
406 407 3.534554 TGGGTGTCTTCATTGATCGATG 58.465 45.455 15.87 15.87 0.00 3.84
407 408 3.197549 TGGGTGTCTTCATTGATCGATGA 59.802 43.478 19.92 19.92 34.37 2.92
408 409 4.191544 GGGTGTCTTCATTGATCGATGAA 58.808 43.478 28.77 28.77 42.18 2.57
409 410 4.818546 GGGTGTCTTCATTGATCGATGAAT 59.181 41.667 30.15 2.62 43.10 2.57
410 411 5.297776 GGGTGTCTTCATTGATCGATGAATT 59.702 40.000 30.15 0.00 43.10 2.17
411 412 6.483307 GGGTGTCTTCATTGATCGATGAATTA 59.517 38.462 30.15 21.26 43.10 1.40
412 413 7.348201 GGTGTCTTCATTGATCGATGAATTAC 58.652 38.462 30.15 28.05 43.10 1.89
413 414 7.011389 GGTGTCTTCATTGATCGATGAATTACA 59.989 37.037 30.15 29.59 43.10 2.41
414 415 8.554528 GTGTCTTCATTGATCGATGAATTACAT 58.445 33.333 31.99 0.78 43.10 2.29
415 416 9.762933 TGTCTTCATTGATCGATGAATTACATA 57.237 29.630 30.15 17.16 43.10 2.29
435 436 7.101652 ACATATATATACCTCAGGTGCTTCG 57.898 40.000 6.61 0.00 36.19 3.79
436 437 2.821991 ATATACCTCAGGTGCTTCGC 57.178 50.000 6.61 0.00 36.19 4.70
437 438 1.480789 TATACCTCAGGTGCTTCGCA 58.519 50.000 6.61 0.00 36.19 5.10
453 454 3.858040 GCACAGTCGCGATGTTTAG 57.142 52.632 14.06 7.48 0.00 1.85
454 455 0.370273 GCACAGTCGCGATGTTTAGG 59.630 55.000 14.06 7.15 0.00 2.69
455 456 1.990799 CACAGTCGCGATGTTTAGGA 58.009 50.000 14.06 0.00 0.00 2.94
456 457 2.333926 CACAGTCGCGATGTTTAGGAA 58.666 47.619 14.06 0.00 0.00 3.36
457 458 2.345641 CACAGTCGCGATGTTTAGGAAG 59.654 50.000 14.06 0.82 0.00 3.46
458 459 1.927174 CAGTCGCGATGTTTAGGAAGG 59.073 52.381 14.06 0.00 0.00 3.46
459 460 1.822990 AGTCGCGATGTTTAGGAAGGA 59.177 47.619 14.06 0.00 0.00 3.36
460 461 1.925185 GTCGCGATGTTTAGGAAGGAC 59.075 52.381 14.06 0.00 0.00 3.85
461 462 1.546923 TCGCGATGTTTAGGAAGGACA 59.453 47.619 3.71 0.00 0.00 4.02
462 463 1.659098 CGCGATGTTTAGGAAGGACAC 59.341 52.381 0.00 0.00 0.00 3.67
463 464 1.659098 GCGATGTTTAGGAAGGACACG 59.341 52.381 0.00 0.00 0.00 4.49
464 465 2.929592 GCGATGTTTAGGAAGGACACGT 60.930 50.000 0.00 0.00 0.00 4.49
465 466 2.921754 CGATGTTTAGGAAGGACACGTC 59.078 50.000 0.00 0.00 0.00 4.34
466 467 2.427232 TGTTTAGGAAGGACACGTCG 57.573 50.000 0.00 0.00 0.00 5.12
467 468 1.000060 TGTTTAGGAAGGACACGTCGG 60.000 52.381 0.00 0.00 0.00 4.79
468 469 1.270550 GTTTAGGAAGGACACGTCGGA 59.729 52.381 0.00 0.00 0.00 4.55
469 470 0.883833 TTAGGAAGGACACGTCGGAC 59.116 55.000 0.00 0.00 0.00 4.79
470 471 0.250858 TAGGAAGGACACGTCGGACA 60.251 55.000 9.10 0.00 0.00 4.02
471 472 1.080705 GGAAGGACACGTCGGACAG 60.081 63.158 9.10 2.54 0.00 3.51
472 473 1.521450 GGAAGGACACGTCGGACAGA 61.521 60.000 9.10 0.00 0.00 3.41
473 474 0.313043 GAAGGACACGTCGGACAGAA 59.687 55.000 9.10 0.00 0.00 3.02
474 475 0.314302 AAGGACACGTCGGACAGAAG 59.686 55.000 9.10 0.00 0.00 2.85
475 476 1.733399 GGACACGTCGGACAGAAGC 60.733 63.158 9.10 0.00 0.00 3.86
476 477 1.007734 GACACGTCGGACAGAAGCA 60.008 57.895 9.10 0.00 0.00 3.91
477 478 0.388649 GACACGTCGGACAGAAGCAT 60.389 55.000 9.10 0.00 0.00 3.79
478 479 0.388649 ACACGTCGGACAGAAGCATC 60.389 55.000 9.10 0.00 0.00 3.91
479 480 1.078759 CACGTCGGACAGAAGCATCC 61.079 60.000 9.10 0.00 0.00 3.51
485 486 1.808411 GGACAGAAGCATCCGTTTCA 58.192 50.000 0.00 0.00 34.98 2.69
486 487 2.151202 GGACAGAAGCATCCGTTTCAA 58.849 47.619 0.00 0.00 34.98 2.69
487 488 2.160417 GGACAGAAGCATCCGTTTCAAG 59.840 50.000 0.00 0.00 34.98 3.02
488 489 3.067106 GACAGAAGCATCCGTTTCAAGA 58.933 45.455 0.00 0.00 34.98 3.02
489 490 3.070018 ACAGAAGCATCCGTTTCAAGAG 58.930 45.455 0.00 0.00 34.98 2.85
490 491 3.244215 ACAGAAGCATCCGTTTCAAGAGA 60.244 43.478 0.00 0.00 34.98 3.10
491 492 3.748048 CAGAAGCATCCGTTTCAAGAGAA 59.252 43.478 0.00 0.00 34.98 2.87
492 493 3.999663 AGAAGCATCCGTTTCAAGAGAAG 59.000 43.478 0.00 0.00 34.98 2.85
493 494 2.704572 AGCATCCGTTTCAAGAGAAGG 58.295 47.619 0.00 0.00 34.71 3.46
494 495 1.740025 GCATCCGTTTCAAGAGAAGGG 59.260 52.381 0.00 0.00 34.71 3.95
495 496 2.359900 CATCCGTTTCAAGAGAAGGGG 58.640 52.381 0.00 0.00 34.71 4.79
496 497 0.690762 TCCGTTTCAAGAGAAGGGGG 59.309 55.000 0.00 0.00 34.71 5.40
497 498 0.400594 CCGTTTCAAGAGAAGGGGGT 59.599 55.000 0.00 0.00 34.71 4.95
498 499 1.523758 CGTTTCAAGAGAAGGGGGTG 58.476 55.000 0.00 0.00 34.71 4.61
499 500 1.202770 CGTTTCAAGAGAAGGGGGTGT 60.203 52.381 0.00 0.00 34.71 4.16
500 501 2.230660 GTTTCAAGAGAAGGGGGTGTG 58.769 52.381 0.00 0.00 34.71 3.82
501 502 1.518367 TTCAAGAGAAGGGGGTGTGT 58.482 50.000 0.00 0.00 0.00 3.72
502 503 0.764890 TCAAGAGAAGGGGGTGTGTG 59.235 55.000 0.00 0.00 0.00 3.82
503 504 0.890996 CAAGAGAAGGGGGTGTGTGC 60.891 60.000 0.00 0.00 0.00 4.57
504 505 1.352622 AAGAGAAGGGGGTGTGTGCA 61.353 55.000 0.00 0.00 0.00 4.57
505 506 1.302832 GAGAAGGGGGTGTGTGCAG 60.303 63.158 0.00 0.00 0.00 4.41
506 507 2.282462 GAAGGGGGTGTGTGCAGG 60.282 66.667 0.00 0.00 0.00 4.85
507 508 2.776526 AAGGGGGTGTGTGCAGGA 60.777 61.111 0.00 0.00 0.00 3.86
508 509 2.351924 GAAGGGGGTGTGTGCAGGAA 62.352 60.000 0.00 0.00 0.00 3.36
509 510 1.943730 AAGGGGGTGTGTGCAGGAAA 61.944 55.000 0.00 0.00 0.00 3.13
510 511 2.200337 GGGGGTGTGTGCAGGAAAC 61.200 63.158 0.00 0.00 0.00 2.78
511 512 1.152756 GGGGTGTGTGCAGGAAACT 60.153 57.895 0.00 0.00 46.44 2.66
512 513 0.109723 GGGGTGTGTGCAGGAAACTA 59.890 55.000 0.00 0.00 40.21 2.24
513 514 1.235724 GGGTGTGTGCAGGAAACTAC 58.764 55.000 0.00 0.00 40.21 2.73
514 515 1.476110 GGGTGTGTGCAGGAAACTACA 60.476 52.381 0.00 0.00 40.21 2.74
515 516 2.504367 GGTGTGTGCAGGAAACTACAT 58.496 47.619 0.00 0.00 40.21 2.29
516 517 2.226437 GGTGTGTGCAGGAAACTACATG 59.774 50.000 0.00 0.00 40.21 3.21
517 518 2.878406 GTGTGTGCAGGAAACTACATGT 59.122 45.455 2.69 2.69 40.21 3.21
518 519 3.058914 GTGTGTGCAGGAAACTACATGTC 60.059 47.826 0.00 0.00 40.21 3.06
519 520 3.181455 TGTGTGCAGGAAACTACATGTCT 60.181 43.478 0.00 0.00 40.21 3.41
520 521 3.187227 GTGTGCAGGAAACTACATGTCTG 59.813 47.826 0.00 3.37 40.21 3.51
521 522 3.181455 TGTGCAGGAAACTACATGTCTGT 60.181 43.478 0.00 0.00 40.21 3.41
522 523 3.815401 GTGCAGGAAACTACATGTCTGTT 59.185 43.478 0.00 6.47 40.21 3.16
523 524 4.994852 GTGCAGGAAACTACATGTCTGTTA 59.005 41.667 14.78 2.65 40.21 2.41
524 525 4.994852 TGCAGGAAACTACATGTCTGTTAC 59.005 41.667 14.78 11.74 40.21 2.50
525 526 4.994852 GCAGGAAACTACATGTCTGTTACA 59.005 41.667 14.78 0.00 40.44 2.41
526 527 5.468746 GCAGGAAACTACATGTCTGTTACAA 59.531 40.000 14.78 0.00 39.72 2.41
527 528 6.347725 GCAGGAAACTACATGTCTGTTACAAG 60.348 42.308 14.78 2.66 39.72 3.16
528 529 5.701290 AGGAAACTACATGTCTGTTACAAGC 59.299 40.000 14.78 5.70 39.89 4.01
529 530 5.389516 GGAAACTACATGTCTGTTACAAGCG 60.390 44.000 14.78 0.00 42.70 4.68
530 531 4.252971 ACTACATGTCTGTTACAAGCGT 57.747 40.909 0.00 0.00 42.70 5.07
531 532 5.381174 ACTACATGTCTGTTACAAGCGTA 57.619 39.130 0.00 0.00 42.70 4.42
532 533 5.399858 ACTACATGTCTGTTACAAGCGTAG 58.600 41.667 0.00 0.00 42.70 3.51
533 534 4.514781 ACATGTCTGTTACAAGCGTAGA 57.485 40.909 0.00 0.00 42.70 2.59
534 535 5.073311 ACATGTCTGTTACAAGCGTAGAT 57.927 39.130 0.00 0.00 42.70 1.98
535 536 5.479306 ACATGTCTGTTACAAGCGTAGATT 58.521 37.500 0.00 0.00 42.70 2.40
536 537 6.627243 ACATGTCTGTTACAAGCGTAGATTA 58.373 36.000 0.00 0.00 42.70 1.75
537 538 7.265673 ACATGTCTGTTACAAGCGTAGATTAT 58.734 34.615 0.00 0.00 42.70 1.28
538 539 8.410912 ACATGTCTGTTACAAGCGTAGATTATA 58.589 33.333 0.00 0.00 42.70 0.98
539 540 8.691727 CATGTCTGTTACAAGCGTAGATTATAC 58.308 37.037 0.00 0.00 42.70 1.47
540 541 7.198390 TGTCTGTTACAAGCGTAGATTATACC 58.802 38.462 0.00 0.00 29.87 2.73
541 542 7.067859 TGTCTGTTACAAGCGTAGATTATACCT 59.932 37.037 0.00 0.00 29.87 3.08
542 543 8.562892 GTCTGTTACAAGCGTAGATTATACCTA 58.437 37.037 0.00 0.00 29.87 3.08
543 544 9.123902 TCTGTTACAAGCGTAGATTATACCTAA 57.876 33.333 0.00 0.00 29.87 2.69
544 545 9.909644 CTGTTACAAGCGTAGATTATACCTAAT 57.090 33.333 0.00 0.00 29.87 1.73
551 552 9.871238 AAGCGTAGATTATACCTAATTACATGG 57.129 33.333 0.00 0.00 29.87 3.66
552 553 9.251440 AGCGTAGATTATACCTAATTACATGGA 57.749 33.333 0.00 0.00 0.00 3.41
642 643 6.371389 GGAATGGCGTATTAATGCTAAAGTC 58.629 40.000 0.00 0.00 37.78 3.01
646 647 4.201576 GCGTATTAATGCTAAAGTCACGC 58.798 43.478 9.90 9.90 44.19 5.34
661 662 3.795101 AGTCACGCGTGCATAATAGTTAC 59.205 43.478 33.63 21.24 0.00 2.50
686 687 8.973182 ACTTTTACAAATTCTGGGTTCAGTTTA 58.027 29.630 0.00 0.00 41.59 2.01
687 688 9.244799 CTTTTACAAATTCTGGGTTCAGTTTAC 57.755 33.333 0.00 0.00 41.59 2.01
719 720 2.422479 GGGTGAAACTAGAATTTCCCGC 59.578 50.000 0.00 0.00 37.72 6.13
742 743 3.061697 CGACCGAGAAATAGGAAAAACCG 59.938 47.826 0.00 0.00 44.74 4.44
770 773 8.906867 TGAGAAAATGGGCTTGAGATAATAAAG 58.093 33.333 0.00 0.00 0.00 1.85
779 782 7.035612 GGCTTGAGATAATAAAGTTTGTTGGG 58.964 38.462 7.77 0.00 0.00 4.12
882 892 8.569641 AGCAATGCAAAATTGTAAAATCATTGT 58.430 25.926 8.35 4.62 40.67 2.71
1152 1162 5.242615 GCCTCTGGAAAATTCTTCAGAGTTT 59.757 40.000 14.75 0.00 46.93 2.66
1155 1165 7.176340 CCTCTGGAAAATTCTTCAGAGTTTCAT 59.824 37.037 14.75 0.00 46.93 2.57
1170 1180 1.420641 TTCATCTTGATCCGCACGCG 61.421 55.000 3.53 3.53 39.44 6.01
1173 1183 0.530650 ATCTTGATCCGCACGCGAAT 60.531 50.000 15.93 0.00 42.83 3.34
1237 1247 2.133742 GACGTCGAGGTGGTTCCGAA 62.134 60.000 16.63 0.00 41.99 4.30
1344 1354 3.017581 GGGGCTGTCAGGGTGGAT 61.018 66.667 1.14 0.00 0.00 3.41
1603 1620 5.525012 TGCTGACACTGCTATGATATGAAAC 59.475 40.000 0.00 0.00 0.00 2.78
1606 1623 6.283694 TGACACTGCTATGATATGAAACTCC 58.716 40.000 0.00 0.00 0.00 3.85
1608 1625 5.069119 ACACTGCTATGATATGAAACTCCGA 59.931 40.000 0.00 0.00 0.00 4.55
1612 1629 5.753438 TGCTATGATATGAAACTCCGAACAC 59.247 40.000 0.00 0.00 0.00 3.32
1655 1673 5.188359 TGATGAGGTTCTTGATGTCTGATCA 59.812 40.000 0.00 0.00 0.00 2.92
1699 1724 2.191908 CGGATCATTTGGGCGGGA 59.808 61.111 0.00 0.00 0.00 5.14
1704 1729 2.489073 GGATCATTTGGGCGGGAAGTAT 60.489 50.000 0.00 0.00 0.00 2.12
2070 2095 2.695759 CGAGACGCCTCTGAGCTGT 61.696 63.158 0.00 0.00 37.28 4.40
2166 2194 3.714963 TCGTCGTCGTACTGCGCA 61.715 61.111 10.98 10.98 41.07 6.09
2316 2344 3.127533 GCCATGTTCCTCGCGCTT 61.128 61.111 5.56 0.00 0.00 4.68
2337 2365 4.057428 GCTGCCGTCGACCTCAGT 62.057 66.667 23.92 0.00 0.00 3.41
2588 2617 1.071239 CGATGACGATTCAATCACGCC 60.071 52.381 0.00 0.00 42.66 5.68
2594 2623 0.679640 GATTCAATCACGCCCCCACA 60.680 55.000 0.00 0.00 0.00 4.17
2595 2624 0.965363 ATTCAATCACGCCCCCACAC 60.965 55.000 0.00 0.00 0.00 3.82
2608 2637 2.335011 CACACGACGAGGCACAGA 59.665 61.111 0.00 0.00 0.00 3.41
2613 2642 2.574399 GACGAGGCACAGAGGACC 59.426 66.667 0.00 0.00 0.00 4.46
2618 2647 2.930562 GGCACAGAGGACCCAGGT 60.931 66.667 0.00 0.00 0.00 4.00
2641 2670 3.041940 CCAACACACGACCCGAGC 61.042 66.667 0.00 0.00 0.00 5.03
2643 2672 3.598715 AACACACGACCCGAGCGA 61.599 61.111 0.00 0.00 0.00 4.93
2655 2684 1.591248 CCGAGCGAACGTCAATTTTG 58.409 50.000 0.00 0.00 0.00 2.44
2657 2686 2.156117 CCGAGCGAACGTCAATTTTGTA 59.844 45.455 0.00 0.00 0.00 2.41
2668 2697 9.400638 GAACGTCAATTTTGTATGGATTTTGTA 57.599 29.630 0.00 0.00 0.00 2.41
2690 2720 2.242882 TTTAGGTCGGGTAAGGAGCT 57.757 50.000 0.00 0.00 43.92 4.09
2721 2751 4.681744 CATTTGTATATTTGCGCTGGGTT 58.318 39.130 9.73 0.00 0.00 4.11
2764 2794 4.988598 CCGTGCGCCCAACTGACT 62.989 66.667 4.18 0.00 0.00 3.41
2765 2795 2.048597 CGTGCGCCCAACTGACTA 60.049 61.111 4.18 0.00 0.00 2.59
2850 2880 2.106938 TTCATGCCGGCTAGAGCG 59.893 61.111 29.70 9.40 43.26 5.03
2890 2920 9.060347 CATGTATCAGCCTACAAAATAATCACT 57.940 33.333 0.00 0.00 35.37 3.41
2896 2926 5.658190 AGCCTACAAAATAATCACTTGGCAT 59.342 36.000 0.00 0.00 39.10 4.40
2924 2956 1.442520 CGCACAAAGAACGGCCATG 60.443 57.895 2.24 0.00 0.00 3.66
2925 2957 1.659794 GCACAAAGAACGGCCATGT 59.340 52.632 2.24 0.00 0.00 3.21
2935 2967 2.779755 ACGGCCATGTTTCATGTCTA 57.220 45.000 2.24 0.00 0.00 2.59
2937 2969 2.027192 ACGGCCATGTTTCATGTCTAGT 60.027 45.455 2.24 1.88 0.00 2.57
2940 2972 2.684881 GCCATGTTTCATGTCTAGTGGG 59.315 50.000 8.57 0.00 0.00 4.61
2944 2976 4.974645 TGTTTCATGTCTAGTGGGTCTT 57.025 40.909 0.00 0.00 0.00 3.01
2948 2980 3.366396 TCATGTCTAGTGGGTCTTCCTC 58.634 50.000 0.00 0.00 36.20 3.71
2955 2987 1.550976 AGTGGGTCTTCCTCGTTCATC 59.449 52.381 0.00 0.00 36.20 2.92
2968 3000 0.605319 GTTCATCCCCGCACACAAGA 60.605 55.000 0.00 0.00 0.00 3.02
2978 3010 2.485426 CCGCACACAAGATGACTCAATT 59.515 45.455 0.00 0.00 0.00 2.32
2996 3028 7.971201 ACTCAATTATCTTGATGGAGCATCTA 58.029 34.615 0.00 0.00 41.06 1.98
3012 3044 4.940654 AGCATCTACTTTTGCTTCTTCTCC 59.059 41.667 0.00 0.00 46.71 3.71
3025 3057 5.063880 GCTTCTTCTCCAACCAACTTCTTA 58.936 41.667 0.00 0.00 0.00 2.10
3031 3063 6.554334 TCTCCAACCAACTTCTTATTTTCG 57.446 37.500 0.00 0.00 0.00 3.46
3036 3068 4.077108 ACCAACTTCTTATTTTCGGGGAC 58.923 43.478 0.00 0.00 0.00 4.46
3048 3081 2.747855 GGGGACGCTTGCTCAAGG 60.748 66.667 11.15 4.63 38.80 3.61
3066 3101 1.517832 GCCACGGTCATGAGCTAGT 59.482 57.895 21.73 11.02 0.00 2.57
3079 3115 2.903784 TGAGCTAGTGCCACCTCTTTTA 59.096 45.455 0.00 0.00 40.80 1.52
3082 3118 3.055747 AGCTAGTGCCACCTCTTTTACTC 60.056 47.826 0.00 0.00 40.80 2.59
3103 3139 1.301637 GTGTTTGCATTGGTGGCCC 60.302 57.895 0.00 0.00 0.00 5.80
3121 3157 0.108756 CCCGGTCTCGAGTTTCTTCC 60.109 60.000 13.13 6.00 39.00 3.46
3131 3167 2.805657 CGAGTTTCTTCCTTTGGACGGT 60.806 50.000 0.00 0.00 0.00 4.83
3159 3195 1.757682 TCTCGAGCTTCCTCCTCTTC 58.242 55.000 7.81 0.00 34.49 2.87
3166 3202 0.914644 CTTCCTCCTCTTCATGGCCA 59.085 55.000 8.56 8.56 0.00 5.36
3179 3215 1.348008 ATGGCCACCTCCATGTCGAT 61.348 55.000 8.16 0.00 44.72 3.59
3187 3223 3.099905 ACCTCCATGTCGATCTTCTTCA 58.900 45.455 0.00 0.00 0.00 3.02
3190 3226 4.749099 CCTCCATGTCGATCTTCTTCATTC 59.251 45.833 0.00 0.00 0.00 2.67
3202 3238 2.283298 TCTTCATTCGGAGCTTGATGC 58.717 47.619 0.00 0.00 43.29 3.91
3215 3251 2.737679 GCTTGATGCAGGCCTTCATTTC 60.738 50.000 19.39 9.11 42.31 2.17
3222 3258 1.563410 CAGGCCTTCATTTCCTCCTCT 59.437 52.381 0.00 0.00 0.00 3.69
3238 3274 1.882623 CCTCTTTTTCTTGGCGCTTCT 59.117 47.619 7.64 0.00 0.00 2.85
3242 3278 3.003689 TCTTTTTCTTGGCGCTTCTTCTG 59.996 43.478 7.64 0.00 0.00 3.02
3250 3286 1.139058 GGCGCTTCTTCTGATCCCTTA 59.861 52.381 7.64 0.00 0.00 2.69
3267 3304 3.270877 CCTTACTCCTTTTGGGTCATCG 58.729 50.000 0.00 0.00 40.87 3.84
3332 3369 3.888093 CTCGTCCACCTTCGAGTTT 57.112 52.632 6.44 0.00 45.37 2.66
3367 3404 3.465871 GCCTCTTCACTCCATCTTCATC 58.534 50.000 0.00 0.00 0.00 2.92
3370 3407 3.710677 CTCTTCACTCCATCTTCATCCCT 59.289 47.826 0.00 0.00 0.00 4.20
3405 3442 3.181461 CGACCCTCCATGCTTCTTTAGAT 60.181 47.826 0.00 0.00 0.00 1.98
3411 3448 2.289002 CCATGCTTCTTTAGATCGGCAC 59.711 50.000 0.00 0.00 31.35 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.823304 GGAGGAAACCATATCTGCCATTC 59.177 47.826 0.00 0.00 0.00 2.67
1 2 3.464833 AGGAGGAAACCATATCTGCCATT 59.535 43.478 0.00 0.00 0.00 3.16
2 3 3.059097 AGGAGGAAACCATATCTGCCAT 58.941 45.455 0.00 0.00 0.00 4.40
3 4 2.492025 AGGAGGAAACCATATCTGCCA 58.508 47.619 0.00 0.00 0.00 4.92
4 5 3.481453 GAAGGAGGAAACCATATCTGCC 58.519 50.000 0.00 0.00 0.00 4.85
5 6 3.134458 CGAAGGAGGAAACCATATCTGC 58.866 50.000 0.00 0.00 0.00 4.26
22 23 0.437295 CCACGACTAAAACGCCGAAG 59.563 55.000 0.00 0.00 0.00 3.79
23 24 0.249405 ACCACGACTAAAACGCCGAA 60.249 50.000 0.00 0.00 0.00 4.30
24 25 0.940519 CACCACGACTAAAACGCCGA 60.941 55.000 0.00 0.00 0.00 5.54
25 26 1.489824 CACCACGACTAAAACGCCG 59.510 57.895 0.00 0.00 0.00 6.46
26 27 0.881600 ACCACCACGACTAAAACGCC 60.882 55.000 0.00 0.00 0.00 5.68
27 28 1.782044 TACCACCACGACTAAAACGC 58.218 50.000 0.00 0.00 0.00 4.84
28 29 2.093152 GCATACCACCACGACTAAAACG 59.907 50.000 0.00 0.00 0.00 3.60
29 30 3.332034 AGCATACCACCACGACTAAAAC 58.668 45.455 0.00 0.00 0.00 2.43
30 31 3.688694 AGCATACCACCACGACTAAAA 57.311 42.857 0.00 0.00 0.00 1.52
31 32 4.018490 TCTAGCATACCACCACGACTAAA 58.982 43.478 0.00 0.00 0.00 1.85
32 33 3.623703 TCTAGCATACCACCACGACTAA 58.376 45.455 0.00 0.00 0.00 2.24
33 34 3.286329 TCTAGCATACCACCACGACTA 57.714 47.619 0.00 0.00 0.00 2.59
34 35 2.139323 TCTAGCATACCACCACGACT 57.861 50.000 0.00 0.00 0.00 4.18
35 36 2.623889 AGATCTAGCATACCACCACGAC 59.376 50.000 0.00 0.00 0.00 4.34
36 37 2.623416 CAGATCTAGCATACCACCACGA 59.377 50.000 0.00 0.00 0.00 4.35
37 38 2.288457 CCAGATCTAGCATACCACCACG 60.288 54.545 0.00 0.00 0.00 4.94
38 39 2.965831 TCCAGATCTAGCATACCACCAC 59.034 50.000 0.00 0.00 0.00 4.16
39 40 3.234353 CTCCAGATCTAGCATACCACCA 58.766 50.000 0.00 0.00 0.00 4.17
40 41 3.235200 ACTCCAGATCTAGCATACCACC 58.765 50.000 0.00 0.00 0.00 4.61
41 42 4.557695 CGAACTCCAGATCTAGCATACCAC 60.558 50.000 0.00 0.00 0.00 4.16
42 43 3.570125 CGAACTCCAGATCTAGCATACCA 59.430 47.826 0.00 0.00 0.00 3.25
43 44 3.821600 TCGAACTCCAGATCTAGCATACC 59.178 47.826 0.00 0.00 0.00 2.73
44 45 5.398169 CATCGAACTCCAGATCTAGCATAC 58.602 45.833 0.00 0.00 0.00 2.39
45 46 4.460731 CCATCGAACTCCAGATCTAGCATA 59.539 45.833 0.00 0.00 0.00 3.14
46 47 3.257873 CCATCGAACTCCAGATCTAGCAT 59.742 47.826 0.00 0.00 0.00 3.79
47 48 2.625314 CCATCGAACTCCAGATCTAGCA 59.375 50.000 0.00 0.00 0.00 3.49
48 49 2.609244 GCCATCGAACTCCAGATCTAGC 60.609 54.545 0.00 0.00 0.00 3.42
49 50 2.351253 CGCCATCGAACTCCAGATCTAG 60.351 54.545 0.00 0.00 38.10 2.43
50 51 1.609072 CGCCATCGAACTCCAGATCTA 59.391 52.381 0.00 0.00 38.10 1.98
51 52 0.387202 CGCCATCGAACTCCAGATCT 59.613 55.000 0.00 0.00 38.10 2.75
52 53 0.103208 ACGCCATCGAACTCCAGATC 59.897 55.000 0.00 0.00 39.41 2.75
53 54 0.179100 CACGCCATCGAACTCCAGAT 60.179 55.000 0.00 0.00 39.41 2.90
54 55 1.215382 CACGCCATCGAACTCCAGA 59.785 57.895 0.00 0.00 39.41 3.86
55 56 1.078759 GACACGCCATCGAACTCCAG 61.079 60.000 0.00 0.00 39.41 3.86
56 57 1.080093 GACACGCCATCGAACTCCA 60.080 57.895 0.00 0.00 39.41 3.86
57 58 1.810030 GGACACGCCATCGAACTCC 60.810 63.158 0.00 0.00 39.41 3.85
58 59 2.158959 CGGACACGCCATCGAACTC 61.159 63.158 0.00 0.00 39.41 3.01
59 60 2.126071 CGGACACGCCATCGAACT 60.126 61.111 0.00 0.00 39.41 3.01
60 61 3.186047 CCGGACACGCCATCGAAC 61.186 66.667 0.00 0.00 39.22 3.95
61 62 4.444838 CCCGGACACGCCATCGAA 62.445 66.667 0.73 0.00 39.22 3.71
78 79 2.764637 AATCAGACCGGGGCAACACC 62.765 60.000 6.32 0.00 35.43 4.16
79 80 1.303317 AATCAGACCGGGGCAACAC 60.303 57.895 6.32 0.00 39.74 3.32
80 81 1.002624 GAATCAGACCGGGGCAACA 60.003 57.895 6.32 0.00 39.74 3.33
81 82 2.106683 CGAATCAGACCGGGGCAAC 61.107 63.158 6.32 0.00 0.00 4.17
82 83 2.119484 AACGAATCAGACCGGGGCAA 62.119 55.000 6.32 0.00 0.00 4.52
83 84 2.515996 GAACGAATCAGACCGGGGCA 62.516 60.000 6.32 0.00 0.00 5.36
84 85 1.814169 GAACGAATCAGACCGGGGC 60.814 63.158 6.32 0.00 0.00 5.80
85 86 0.036765 TTGAACGAATCAGACCGGGG 60.037 55.000 6.32 0.00 39.77 5.73
86 87 1.076332 GTTGAACGAATCAGACCGGG 58.924 55.000 6.32 0.00 39.77 5.73
87 88 0.713883 CGTTGAACGAATCAGACCGG 59.286 55.000 13.13 0.00 46.05 5.28
88 89 0.713883 CCGTTGAACGAATCAGACCG 59.286 55.000 20.47 0.00 46.05 4.79
89 90 1.792006 ACCGTTGAACGAATCAGACC 58.208 50.000 20.47 0.00 46.05 3.85
90 91 3.367025 CCTTACCGTTGAACGAATCAGAC 59.633 47.826 20.47 0.00 46.05 3.51
91 92 3.581755 CCTTACCGTTGAACGAATCAGA 58.418 45.455 20.47 0.00 46.05 3.27
92 93 2.671396 CCCTTACCGTTGAACGAATCAG 59.329 50.000 20.47 8.95 46.05 2.90
93 94 2.690786 CCCTTACCGTTGAACGAATCA 58.309 47.619 20.47 0.00 46.05 2.57
94 95 1.395954 GCCCTTACCGTTGAACGAATC 59.604 52.381 20.47 0.00 46.05 2.52
95 96 1.002773 AGCCCTTACCGTTGAACGAAT 59.997 47.619 20.47 9.42 46.05 3.34
96 97 0.393820 AGCCCTTACCGTTGAACGAA 59.606 50.000 20.47 5.46 46.05 3.85
97 98 0.393820 AAGCCCTTACCGTTGAACGA 59.606 50.000 20.47 0.00 46.05 3.85
98 99 0.794473 GAAGCCCTTACCGTTGAACG 59.206 55.000 11.30 11.30 42.11 3.95
99 100 1.534163 GTGAAGCCCTTACCGTTGAAC 59.466 52.381 0.00 0.00 0.00 3.18
100 101 1.418637 AGTGAAGCCCTTACCGTTGAA 59.581 47.619 0.00 0.00 0.00 2.69
101 102 1.053424 AGTGAAGCCCTTACCGTTGA 58.947 50.000 0.00 0.00 0.00 3.18
102 103 1.892209 AAGTGAAGCCCTTACCGTTG 58.108 50.000 0.00 0.00 0.00 4.10
103 104 2.621526 CAAAAGTGAAGCCCTTACCGTT 59.378 45.455 0.00 0.00 0.00 4.44
104 105 2.227194 CAAAAGTGAAGCCCTTACCGT 58.773 47.619 0.00 0.00 0.00 4.83
105 106 1.539827 CCAAAAGTGAAGCCCTTACCG 59.460 52.381 0.00 0.00 0.00 4.02
106 107 2.594131 ACCAAAAGTGAAGCCCTTACC 58.406 47.619 0.00 0.00 0.00 2.85
133 134 0.537371 AACTTTGCGGACCTCCAAGG 60.537 55.000 0.85 2.22 42.49 3.61
134 135 0.593128 CAACTTTGCGGACCTCCAAG 59.407 55.000 0.00 0.00 35.14 3.61
135 136 1.452145 GCAACTTTGCGGACCTCCAA 61.452 55.000 0.00 0.00 45.11 3.53
136 137 1.896660 GCAACTTTGCGGACCTCCA 60.897 57.895 0.00 0.00 45.11 3.86
137 138 2.954611 GCAACTTTGCGGACCTCC 59.045 61.111 0.00 0.00 45.11 4.30
146 147 3.313249 TCCATCGCTGATATGCAACTTTG 59.687 43.478 0.00 0.00 0.00 2.77
147 148 3.544684 TCCATCGCTGATATGCAACTTT 58.455 40.909 0.00 0.00 0.00 2.66
148 149 3.136763 CTCCATCGCTGATATGCAACTT 58.863 45.455 0.00 0.00 0.00 2.66
149 150 2.763933 CTCCATCGCTGATATGCAACT 58.236 47.619 0.00 0.00 0.00 3.16
150 151 1.196354 GCTCCATCGCTGATATGCAAC 59.804 52.381 0.00 0.00 0.00 4.17
151 152 1.516161 GCTCCATCGCTGATATGCAA 58.484 50.000 0.00 0.00 0.00 4.08
152 153 0.321034 GGCTCCATCGCTGATATGCA 60.321 55.000 0.00 0.00 0.00 3.96
153 154 1.357258 CGGCTCCATCGCTGATATGC 61.357 60.000 0.00 0.00 38.57 3.14
154 155 2.746997 CGGCTCCATCGCTGATATG 58.253 57.895 0.00 0.00 38.57 1.78
172 173 4.838486 CTCACCCGAGCTCGACGC 62.838 72.222 36.59 0.00 43.02 5.19
173 174 2.585170 CTTCTCACCCGAGCTCGACG 62.585 65.000 36.59 26.31 43.02 5.12
174 175 1.137825 CTTCTCACCCGAGCTCGAC 59.862 63.158 36.59 0.00 43.02 4.20
175 176 2.046864 CCTTCTCACCCGAGCTCGA 61.047 63.158 36.59 16.28 43.02 4.04
176 177 2.344203 ACCTTCTCACCCGAGCTCG 61.344 63.158 29.06 29.06 39.30 5.03
177 178 1.216710 CACCTTCTCACCCGAGCTC 59.783 63.158 2.73 2.73 39.30 4.09
178 179 0.616111 ATCACCTTCTCACCCGAGCT 60.616 55.000 0.00 0.00 39.30 4.09
179 180 0.250513 AATCACCTTCTCACCCGAGC 59.749 55.000 0.00 0.00 39.30 5.03
180 181 2.289694 ACAAATCACCTTCTCACCCGAG 60.290 50.000 0.00 0.00 40.98 4.63
181 182 1.697432 ACAAATCACCTTCTCACCCGA 59.303 47.619 0.00 0.00 0.00 5.14
182 183 2.076863 GACAAATCACCTTCTCACCCG 58.923 52.381 0.00 0.00 0.00 5.28
183 184 3.140325 TGACAAATCACCTTCTCACCC 57.860 47.619 0.00 0.00 0.00 4.61
184 185 5.006386 AGAATGACAAATCACCTTCTCACC 58.994 41.667 0.00 0.00 37.79 4.02
185 186 6.566197 AAGAATGACAAATCACCTTCTCAC 57.434 37.500 0.00 0.00 34.48 3.51
186 187 7.503566 AGAAAAGAATGACAAATCACCTTCTCA 59.496 33.333 0.00 0.00 34.48 3.27
187 188 7.880105 AGAAAAGAATGACAAATCACCTTCTC 58.120 34.615 0.00 0.00 34.48 2.87
188 189 7.830099 AGAAAAGAATGACAAATCACCTTCT 57.170 32.000 0.00 0.00 36.26 2.85
189 190 7.324616 CGAAGAAAAGAATGACAAATCACCTTC 59.675 37.037 0.00 0.00 37.79 3.46
190 191 7.141363 CGAAGAAAAGAATGACAAATCACCTT 58.859 34.615 0.00 0.00 37.79 3.50
191 192 6.294176 CCGAAGAAAAGAATGACAAATCACCT 60.294 38.462 0.00 0.00 37.79 4.00
192 193 5.858581 CCGAAGAAAAGAATGACAAATCACC 59.141 40.000 0.00 0.00 37.79 4.02
193 194 6.360681 CACCGAAGAAAAGAATGACAAATCAC 59.639 38.462 0.00 0.00 37.79 3.06
194 195 6.437928 CACCGAAGAAAAGAATGACAAATCA 58.562 36.000 0.00 0.00 39.83 2.57
195 196 5.858581 CCACCGAAGAAAAGAATGACAAATC 59.141 40.000 0.00 0.00 0.00 2.17
196 197 5.772521 CCACCGAAGAAAAGAATGACAAAT 58.227 37.500 0.00 0.00 0.00 2.32
197 198 4.499019 GCCACCGAAGAAAAGAATGACAAA 60.499 41.667 0.00 0.00 0.00 2.83
198 199 3.004315 GCCACCGAAGAAAAGAATGACAA 59.996 43.478 0.00 0.00 0.00 3.18
199 200 2.552315 GCCACCGAAGAAAAGAATGACA 59.448 45.455 0.00 0.00 0.00 3.58
200 201 2.814336 AGCCACCGAAGAAAAGAATGAC 59.186 45.455 0.00 0.00 0.00 3.06
201 202 3.140325 AGCCACCGAAGAAAAGAATGA 57.860 42.857 0.00 0.00 0.00 2.57
202 203 4.003648 AGTAGCCACCGAAGAAAAGAATG 58.996 43.478 0.00 0.00 0.00 2.67
203 204 4.287766 AGTAGCCACCGAAGAAAAGAAT 57.712 40.909 0.00 0.00 0.00 2.40
204 205 3.764237 AGTAGCCACCGAAGAAAAGAA 57.236 42.857 0.00 0.00 0.00 2.52
205 206 4.382685 CCATAGTAGCCACCGAAGAAAAGA 60.383 45.833 0.00 0.00 0.00 2.52
206 207 3.871594 CCATAGTAGCCACCGAAGAAAAG 59.128 47.826 0.00 0.00 0.00 2.27
207 208 3.262405 ACCATAGTAGCCACCGAAGAAAA 59.738 43.478 0.00 0.00 0.00 2.29
208 209 2.835764 ACCATAGTAGCCACCGAAGAAA 59.164 45.455 0.00 0.00 0.00 2.52
209 210 2.167693 CACCATAGTAGCCACCGAAGAA 59.832 50.000 0.00 0.00 0.00 2.52
210 211 1.754803 CACCATAGTAGCCACCGAAGA 59.245 52.381 0.00 0.00 0.00 2.87
211 212 1.202533 CCACCATAGTAGCCACCGAAG 60.203 57.143 0.00 0.00 0.00 3.79
212 213 0.828022 CCACCATAGTAGCCACCGAA 59.172 55.000 0.00 0.00 0.00 4.30
213 214 0.324923 ACCACCATAGTAGCCACCGA 60.325 55.000 0.00 0.00 0.00 4.69
214 215 0.179084 CACCACCATAGTAGCCACCG 60.179 60.000 0.00 0.00 0.00 4.94
215 216 0.463833 GCACCACCATAGTAGCCACC 60.464 60.000 0.00 0.00 0.00 4.61
216 217 0.463833 GGCACCACCATAGTAGCCAC 60.464 60.000 0.00 0.00 37.48 5.01
217 218 1.912220 GGCACCACCATAGTAGCCA 59.088 57.895 0.00 0.00 37.48 4.75
218 219 1.227556 CGGCACCACCATAGTAGCC 60.228 63.158 0.00 0.00 39.03 3.93
219 220 1.227556 CCGGCACCACCATAGTAGC 60.228 63.158 0.00 0.00 39.03 3.58
220 221 1.445942 CCCGGCACCACCATAGTAG 59.554 63.158 0.00 0.00 39.03 2.57
221 222 2.067605 CCCCGGCACCACCATAGTA 61.068 63.158 0.00 0.00 39.03 1.82
222 223 3.407967 CCCCGGCACCACCATAGT 61.408 66.667 0.00 0.00 39.03 2.12
223 224 4.189580 CCCCCGGCACCACCATAG 62.190 72.222 0.00 0.00 39.03 2.23
239 240 4.012895 CAACGCACGTCACCTGCC 62.013 66.667 0.00 0.00 0.00 4.85
240 241 4.012895 CCAACGCACGTCACCTGC 62.013 66.667 0.00 0.00 0.00 4.85
241 242 2.587753 ACCAACGCACGTCACCTG 60.588 61.111 0.00 0.00 0.00 4.00
242 243 2.587753 CACCAACGCACGTCACCT 60.588 61.111 0.00 0.00 0.00 4.00
243 244 2.877974 GACACCAACGCACGTCACC 61.878 63.158 0.00 0.00 0.00 4.02
244 245 1.697772 TTGACACCAACGCACGTCAC 61.698 55.000 0.00 0.00 38.07 3.67
245 246 1.425267 CTTGACACCAACGCACGTCA 61.425 55.000 0.00 0.00 36.63 4.35
246 247 1.275657 CTTGACACCAACGCACGTC 59.724 57.895 0.00 0.00 0.00 4.34
247 248 2.819552 GCTTGACACCAACGCACGT 61.820 57.895 0.00 0.00 0.00 4.49
248 249 2.052237 GCTTGACACCAACGCACG 60.052 61.111 0.00 0.00 0.00 5.34
249 250 1.279840 GAGCTTGACACCAACGCAC 59.720 57.895 0.00 0.00 32.57 5.34
250 251 1.153269 TGAGCTTGACACCAACGCA 60.153 52.632 0.00 0.00 32.57 5.24
251 252 0.880278 TCTGAGCTTGACACCAACGC 60.880 55.000 0.00 0.00 0.00 4.84
252 253 1.143305 CTCTGAGCTTGACACCAACG 58.857 55.000 0.00 0.00 0.00 4.10
253 254 2.533266 TCTCTGAGCTTGACACCAAC 57.467 50.000 0.00 0.00 0.00 3.77
254 255 2.369860 ACATCTCTGAGCTTGACACCAA 59.630 45.455 12.47 0.00 0.00 3.67
255 256 1.973515 ACATCTCTGAGCTTGACACCA 59.026 47.619 12.47 0.00 0.00 4.17
256 257 2.758736 ACATCTCTGAGCTTGACACC 57.241 50.000 12.47 0.00 0.00 4.16
257 258 3.924144 AGAACATCTCTGAGCTTGACAC 58.076 45.455 12.47 5.44 31.12 3.67
268 269 6.945218 ACTGAAAAGATAGCAGAACATCTCT 58.055 36.000 0.00 0.00 33.94 3.10
269 270 7.608308 AACTGAAAAGATAGCAGAACATCTC 57.392 36.000 0.00 0.00 33.94 2.75
270 271 7.992754 AAACTGAAAAGATAGCAGAACATCT 57.007 32.000 0.00 0.00 33.94 2.90
271 272 8.078596 ACAAAACTGAAAAGATAGCAGAACATC 58.921 33.333 0.00 0.00 33.94 3.06
272 273 7.945134 ACAAAACTGAAAAGATAGCAGAACAT 58.055 30.769 0.00 0.00 33.94 2.71
273 274 7.066887 TGACAAAACTGAAAAGATAGCAGAACA 59.933 33.333 0.00 0.00 33.94 3.18
274 275 7.417612 TGACAAAACTGAAAAGATAGCAGAAC 58.582 34.615 0.00 0.00 33.94 3.01
275 276 7.566760 TGACAAAACTGAAAAGATAGCAGAA 57.433 32.000 0.00 0.00 33.94 3.02
276 277 7.229306 ACATGACAAAACTGAAAAGATAGCAGA 59.771 33.333 0.00 0.00 33.94 4.26
277 278 7.365741 ACATGACAAAACTGAAAAGATAGCAG 58.634 34.615 0.00 0.00 35.81 4.24
278 279 7.013178 TGACATGACAAAACTGAAAAGATAGCA 59.987 33.333 0.00 0.00 0.00 3.49
279 280 7.362662 TGACATGACAAAACTGAAAAGATAGC 58.637 34.615 0.00 0.00 0.00 2.97
280 281 8.562892 ACTGACATGACAAAACTGAAAAGATAG 58.437 33.333 0.00 0.00 0.00 2.08
281 282 8.450578 ACTGACATGACAAAACTGAAAAGATA 57.549 30.769 0.00 0.00 0.00 1.98
282 283 7.284034 AGACTGACATGACAAAACTGAAAAGAT 59.716 33.333 0.00 0.00 0.00 2.40
283 284 6.599244 AGACTGACATGACAAAACTGAAAAGA 59.401 34.615 0.00 0.00 0.00 2.52
284 285 6.789262 AGACTGACATGACAAAACTGAAAAG 58.211 36.000 0.00 0.00 0.00 2.27
285 286 6.757897 AGACTGACATGACAAAACTGAAAA 57.242 33.333 0.00 0.00 0.00 2.29
286 287 6.757897 AAGACTGACATGACAAAACTGAAA 57.242 33.333 0.00 0.00 0.00 2.69
287 288 6.757897 AAAGACTGACATGACAAAACTGAA 57.242 33.333 0.00 0.00 0.00 3.02
288 289 6.019075 CGTAAAGACTGACATGACAAAACTGA 60.019 38.462 0.00 0.00 0.00 3.41
289 290 6.129393 CGTAAAGACTGACATGACAAAACTG 58.871 40.000 0.00 0.00 0.00 3.16
290 291 5.815740 ACGTAAAGACTGACATGACAAAACT 59.184 36.000 0.00 0.00 0.00 2.66
291 292 5.901884 CACGTAAAGACTGACATGACAAAAC 59.098 40.000 0.00 0.00 0.00 2.43
292 293 5.813157 TCACGTAAAGACTGACATGACAAAA 59.187 36.000 0.00 0.00 0.00 2.44
293 294 5.233476 GTCACGTAAAGACTGACATGACAAA 59.767 40.000 0.00 0.00 36.18 2.83
294 295 4.743151 GTCACGTAAAGACTGACATGACAA 59.257 41.667 0.00 0.00 36.18 3.18
295 296 4.037565 AGTCACGTAAAGACTGACATGACA 59.962 41.667 15.40 0.00 44.23 3.58
296 297 4.547532 AGTCACGTAAAGACTGACATGAC 58.452 43.478 6.25 8.27 44.23 3.06
297 298 4.848562 AGTCACGTAAAGACTGACATGA 57.151 40.909 6.25 0.00 44.23 3.07
298 299 5.223382 AGAAGTCACGTAAAGACTGACATG 58.777 41.667 7.70 0.00 45.11 3.21
299 300 5.455056 AGAAGTCACGTAAAGACTGACAT 57.545 39.130 7.70 0.00 45.11 3.06
300 301 4.913335 AGAAGTCACGTAAAGACTGACA 57.087 40.909 7.70 0.00 45.11 3.58
301 302 5.999721 AGTAGAAGTCACGTAAAGACTGAC 58.000 41.667 7.70 6.96 45.11 3.51
302 303 6.630444 AAGTAGAAGTCACGTAAAGACTGA 57.370 37.500 7.70 0.00 45.11 3.41
303 304 6.696148 ACAAAGTAGAAGTCACGTAAAGACTG 59.304 38.462 7.70 0.00 45.11 3.51
305 306 7.434602 AGAACAAAGTAGAAGTCACGTAAAGAC 59.565 37.037 0.00 0.00 36.26 3.01
306 307 7.486647 AGAACAAAGTAGAAGTCACGTAAAGA 58.513 34.615 0.00 0.00 0.00 2.52
307 308 7.695869 AGAACAAAGTAGAAGTCACGTAAAG 57.304 36.000 0.00 0.00 0.00 1.85
308 309 8.483307 AAAGAACAAAGTAGAAGTCACGTAAA 57.517 30.769 0.00 0.00 0.00 2.01
309 310 9.754382 ATAAAGAACAAAGTAGAAGTCACGTAA 57.246 29.630 0.00 0.00 0.00 3.18
310 311 9.188588 CATAAAGAACAAAGTAGAAGTCACGTA 57.811 33.333 0.00 0.00 0.00 3.57
311 312 7.924412 TCATAAAGAACAAAGTAGAAGTCACGT 59.076 33.333 0.00 0.00 0.00 4.49
312 313 8.294341 TCATAAAGAACAAAGTAGAAGTCACG 57.706 34.615 0.00 0.00 0.00 4.35
326 327 9.034544 CGTGTCTCATTCATATCATAAAGAACA 57.965 33.333 0.00 0.00 0.00 3.18
327 328 9.035607 ACGTGTCTCATTCATATCATAAAGAAC 57.964 33.333 0.00 0.00 0.00 3.01
334 335 8.585018 TGGTAATACGTGTCTCATTCATATCAT 58.415 33.333 0.00 0.00 0.00 2.45
335 336 7.947282 TGGTAATACGTGTCTCATTCATATCA 58.053 34.615 0.00 0.00 0.00 2.15
336 337 8.864024 CATGGTAATACGTGTCTCATTCATATC 58.136 37.037 0.00 0.00 0.00 1.63
337 338 8.585018 TCATGGTAATACGTGTCTCATTCATAT 58.415 33.333 0.00 0.00 0.00 1.78
338 339 7.947282 TCATGGTAATACGTGTCTCATTCATA 58.053 34.615 0.00 0.00 0.00 2.15
339 340 6.816136 TCATGGTAATACGTGTCTCATTCAT 58.184 36.000 0.00 0.00 0.00 2.57
340 341 6.215495 TCATGGTAATACGTGTCTCATTCA 57.785 37.500 0.00 0.00 0.00 2.57
341 342 7.534085 TTTCATGGTAATACGTGTCTCATTC 57.466 36.000 0.00 0.00 0.00 2.67
342 343 7.915293 TTTTCATGGTAATACGTGTCTCATT 57.085 32.000 0.00 0.00 0.00 2.57
343 344 7.915293 TTTTTCATGGTAATACGTGTCTCAT 57.085 32.000 0.00 0.00 0.00 2.90
367 368 5.163457 ACACCCATTCATTTGTCTCGTTTTT 60.163 36.000 0.00 0.00 0.00 1.94
368 369 4.340950 ACACCCATTCATTTGTCTCGTTTT 59.659 37.500 0.00 0.00 0.00 2.43
369 370 3.888930 ACACCCATTCATTTGTCTCGTTT 59.111 39.130 0.00 0.00 0.00 3.60
370 371 3.486383 ACACCCATTCATTTGTCTCGTT 58.514 40.909 0.00 0.00 0.00 3.85
371 372 3.074412 GACACCCATTCATTTGTCTCGT 58.926 45.455 0.00 0.00 36.29 4.18
372 373 3.338249 AGACACCCATTCATTTGTCTCG 58.662 45.455 0.00 0.00 44.26 4.04
373 374 4.761739 TGAAGACACCCATTCATTTGTCTC 59.238 41.667 3.69 0.01 46.30 3.36
375 376 5.649782 ATGAAGACACCCATTCATTTGTC 57.350 39.130 0.00 0.00 42.11 3.18
380 381 4.577693 CGATCAATGAAGACACCCATTCAT 59.422 41.667 0.00 0.00 45.67 2.57
381 382 3.940852 CGATCAATGAAGACACCCATTCA 59.059 43.478 0.00 0.00 39.59 2.57
382 383 4.191544 TCGATCAATGAAGACACCCATTC 58.808 43.478 0.00 0.00 31.25 2.67
383 384 4.220693 TCGATCAATGAAGACACCCATT 57.779 40.909 0.00 0.00 33.66 3.16
384 385 3.912496 TCGATCAATGAAGACACCCAT 57.088 42.857 0.00 0.00 0.00 4.00
385 386 3.197549 TCATCGATCAATGAAGACACCCA 59.802 43.478 0.00 0.00 32.80 4.51
386 387 3.797039 TCATCGATCAATGAAGACACCC 58.203 45.455 0.00 0.00 32.80 4.61
387 388 5.998454 ATTCATCGATCAATGAAGACACC 57.002 39.130 14.13 0.00 45.96 4.16
388 389 7.909267 TGTAATTCATCGATCAATGAAGACAC 58.091 34.615 17.03 13.16 45.96 3.67
389 390 8.667076 ATGTAATTCATCGATCAATGAAGACA 57.333 30.769 20.67 20.67 45.96 3.41
409 410 8.683615 CGAAGCACCTGAGGTATATATATGTAA 58.316 37.037 2.59 0.00 32.11 2.41
410 411 8.221965 CGAAGCACCTGAGGTATATATATGTA 57.778 38.462 2.59 0.00 32.11 2.29
411 412 7.101652 CGAAGCACCTGAGGTATATATATGT 57.898 40.000 2.59 0.00 32.11 2.29
435 436 0.370273 CCTAAACATCGCGACTGTGC 59.630 55.000 12.93 0.00 0.00 4.57
436 437 1.990799 TCCTAAACATCGCGACTGTG 58.009 50.000 12.93 9.16 0.00 3.66
437 438 2.607187 CTTCCTAAACATCGCGACTGT 58.393 47.619 12.93 14.57 0.00 3.55
438 439 1.927174 CCTTCCTAAACATCGCGACTG 59.073 52.381 12.93 13.86 0.00 3.51
439 440 1.822990 TCCTTCCTAAACATCGCGACT 59.177 47.619 12.93 0.00 0.00 4.18
440 441 1.925185 GTCCTTCCTAAACATCGCGAC 59.075 52.381 12.93 0.00 0.00 5.19
441 442 1.546923 TGTCCTTCCTAAACATCGCGA 59.453 47.619 13.09 13.09 0.00 5.87
442 443 1.659098 GTGTCCTTCCTAAACATCGCG 59.341 52.381 0.00 0.00 0.00 5.87
443 444 1.659098 CGTGTCCTTCCTAAACATCGC 59.341 52.381 0.00 0.00 0.00 4.58
444 445 2.921754 GACGTGTCCTTCCTAAACATCG 59.078 50.000 0.00 0.00 0.00 3.84
445 446 2.921754 CGACGTGTCCTTCCTAAACATC 59.078 50.000 0.00 0.00 0.00 3.06
446 447 2.353406 CCGACGTGTCCTTCCTAAACAT 60.353 50.000 0.00 0.00 0.00 2.71
447 448 1.000060 CCGACGTGTCCTTCCTAAACA 60.000 52.381 0.00 0.00 0.00 2.83
448 449 1.270550 TCCGACGTGTCCTTCCTAAAC 59.729 52.381 0.00 0.00 0.00 2.01
449 450 1.270550 GTCCGACGTGTCCTTCCTAAA 59.729 52.381 0.00 0.00 0.00 1.85
450 451 0.883833 GTCCGACGTGTCCTTCCTAA 59.116 55.000 0.00 0.00 0.00 2.69
451 452 0.250858 TGTCCGACGTGTCCTTCCTA 60.251 55.000 0.00 0.00 0.00 2.94
452 453 1.524863 CTGTCCGACGTGTCCTTCCT 61.525 60.000 0.00 0.00 0.00 3.36
453 454 1.080705 CTGTCCGACGTGTCCTTCC 60.081 63.158 0.00 0.00 0.00 3.46
454 455 0.313043 TTCTGTCCGACGTGTCCTTC 59.687 55.000 0.00 0.00 0.00 3.46
455 456 0.314302 CTTCTGTCCGACGTGTCCTT 59.686 55.000 0.00 0.00 0.00 3.36
456 457 1.957562 CTTCTGTCCGACGTGTCCT 59.042 57.895 0.00 0.00 0.00 3.85
457 458 1.733399 GCTTCTGTCCGACGTGTCC 60.733 63.158 0.00 0.00 0.00 4.02
458 459 0.388649 ATGCTTCTGTCCGACGTGTC 60.389 55.000 0.00 0.00 0.00 3.67
459 460 0.388649 GATGCTTCTGTCCGACGTGT 60.389 55.000 0.00 0.00 0.00 4.49
460 461 1.078759 GGATGCTTCTGTCCGACGTG 61.079 60.000 0.00 0.00 0.00 4.49
461 462 1.215647 GGATGCTTCTGTCCGACGT 59.784 57.895 0.00 0.00 0.00 4.34
462 463 4.094684 GGATGCTTCTGTCCGACG 57.905 61.111 0.00 0.00 0.00 5.12
466 467 1.808411 TGAAACGGATGCTTCTGTCC 58.192 50.000 13.97 9.86 40.70 4.02
467 468 3.067106 TCTTGAAACGGATGCTTCTGTC 58.933 45.455 13.97 4.27 40.70 3.51
468 469 3.070018 CTCTTGAAACGGATGCTTCTGT 58.930 45.455 8.22 8.22 43.51 3.41
469 470 3.329386 TCTCTTGAAACGGATGCTTCTG 58.671 45.455 6.87 6.87 0.00 3.02
470 471 3.685139 TCTCTTGAAACGGATGCTTCT 57.315 42.857 0.00 0.00 0.00 2.85
471 472 3.126000 CCTTCTCTTGAAACGGATGCTTC 59.874 47.826 0.00 0.00 0.00 3.86
472 473 3.077359 CCTTCTCTTGAAACGGATGCTT 58.923 45.455 0.00 0.00 0.00 3.91
473 474 2.616510 CCCTTCTCTTGAAACGGATGCT 60.617 50.000 0.00 0.00 0.00 3.79
474 475 1.740025 CCCTTCTCTTGAAACGGATGC 59.260 52.381 0.00 0.00 0.00 3.91
475 476 2.359900 CCCCTTCTCTTGAAACGGATG 58.640 52.381 0.00 0.00 0.00 3.51
476 477 1.282157 CCCCCTTCTCTTGAAACGGAT 59.718 52.381 0.00 0.00 0.00 4.18
477 478 0.690762 CCCCCTTCTCTTGAAACGGA 59.309 55.000 0.00 0.00 0.00 4.69
478 479 0.400594 ACCCCCTTCTCTTGAAACGG 59.599 55.000 0.00 0.00 0.00 4.44
479 480 1.202770 ACACCCCCTTCTCTTGAAACG 60.203 52.381 0.00 0.00 0.00 3.60
480 481 2.230660 CACACCCCCTTCTCTTGAAAC 58.769 52.381 0.00 0.00 0.00 2.78
481 482 1.850345 ACACACCCCCTTCTCTTGAAA 59.150 47.619 0.00 0.00 0.00 2.69
482 483 1.142870 CACACACCCCCTTCTCTTGAA 59.857 52.381 0.00 0.00 0.00 2.69
483 484 0.764890 CACACACCCCCTTCTCTTGA 59.235 55.000 0.00 0.00 0.00 3.02
484 485 0.890996 GCACACACCCCCTTCTCTTG 60.891 60.000 0.00 0.00 0.00 3.02
485 486 1.352622 TGCACACACCCCCTTCTCTT 61.353 55.000 0.00 0.00 0.00 2.85
486 487 1.770110 TGCACACACCCCCTTCTCT 60.770 57.895 0.00 0.00 0.00 3.10
487 488 1.302832 CTGCACACACCCCCTTCTC 60.303 63.158 0.00 0.00 0.00 2.87
488 489 2.833913 CCTGCACACACCCCCTTCT 61.834 63.158 0.00 0.00 0.00 2.85
489 490 2.282462 CCTGCACACACCCCCTTC 60.282 66.667 0.00 0.00 0.00 3.46
490 491 1.943730 TTTCCTGCACACACCCCCTT 61.944 55.000 0.00 0.00 0.00 3.95
491 492 2.391130 TTTCCTGCACACACCCCCT 61.391 57.895 0.00 0.00 0.00 4.79
492 493 2.197324 TTTCCTGCACACACCCCC 59.803 61.111 0.00 0.00 0.00 5.40
493 494 0.109723 TAGTTTCCTGCACACACCCC 59.890 55.000 0.00 0.00 0.00 4.95
494 495 1.235724 GTAGTTTCCTGCACACACCC 58.764 55.000 0.00 0.00 0.00 4.61
495 496 1.961793 TGTAGTTTCCTGCACACACC 58.038 50.000 0.00 0.00 0.00 4.16
496 497 2.878406 ACATGTAGTTTCCTGCACACAC 59.122 45.455 0.00 0.00 36.06 3.82
497 498 3.138304 GACATGTAGTTTCCTGCACACA 58.862 45.455 0.00 0.00 36.06 3.72
498 499 3.187227 CAGACATGTAGTTTCCTGCACAC 59.813 47.826 0.00 0.00 36.06 3.82
499 500 3.181455 ACAGACATGTAGTTTCCTGCACA 60.181 43.478 0.00 0.00 38.09 4.57
500 501 3.403038 ACAGACATGTAGTTTCCTGCAC 58.597 45.455 0.00 0.00 38.09 4.57
501 502 3.769739 ACAGACATGTAGTTTCCTGCA 57.230 42.857 0.00 0.00 38.09 4.41
502 503 4.994852 TGTAACAGACATGTAGTTTCCTGC 59.005 41.667 18.01 2.67 39.29 4.85
503 504 6.347725 GCTTGTAACAGACATGTAGTTTCCTG 60.348 42.308 18.01 13.19 39.29 3.86
504 505 5.701290 GCTTGTAACAGACATGTAGTTTCCT 59.299 40.000 18.01 0.00 39.29 3.36
505 506 5.389516 CGCTTGTAACAGACATGTAGTTTCC 60.390 44.000 18.01 11.47 39.29 3.13
506 507 5.176958 ACGCTTGTAACAGACATGTAGTTTC 59.823 40.000 18.01 14.34 39.29 2.78
507 508 5.054477 ACGCTTGTAACAGACATGTAGTTT 58.946 37.500 18.01 6.11 39.29 2.66
508 509 4.628074 ACGCTTGTAACAGACATGTAGTT 58.372 39.130 17.23 17.23 39.29 2.24
509 510 4.252971 ACGCTTGTAACAGACATGTAGT 57.747 40.909 0.00 0.00 39.29 2.73
510 511 5.637809 TCTACGCTTGTAACAGACATGTAG 58.362 41.667 0.00 0.00 39.29 2.74
511 512 5.632244 TCTACGCTTGTAACAGACATGTA 57.368 39.130 0.00 0.00 39.29 2.29
512 513 4.514781 TCTACGCTTGTAACAGACATGT 57.485 40.909 0.00 0.00 43.15 3.21
513 514 7.700322 ATAATCTACGCTTGTAACAGACATG 57.300 36.000 0.00 0.00 38.07 3.21
514 515 7.866393 GGTATAATCTACGCTTGTAACAGACAT 59.134 37.037 0.00 0.00 38.07 3.06
515 516 7.067859 AGGTATAATCTACGCTTGTAACAGACA 59.932 37.037 0.00 0.00 35.78 3.41
516 517 7.424001 AGGTATAATCTACGCTTGTAACAGAC 58.576 38.462 0.00 0.00 0.00 3.51
517 518 7.578310 AGGTATAATCTACGCTTGTAACAGA 57.422 36.000 0.00 0.00 0.00 3.41
518 519 9.909644 ATTAGGTATAATCTACGCTTGTAACAG 57.090 33.333 0.00 0.00 0.00 3.16
525 526 9.871238 CCATGTAATTAGGTATAATCTACGCTT 57.129 33.333 0.00 0.00 31.02 4.68
526 527 9.251440 TCCATGTAATTAGGTATAATCTACGCT 57.749 33.333 0.00 0.00 31.02 5.07
549 550 9.823647 GTCTTCTGTTGAGATTTATCTAATCCA 57.176 33.333 0.00 0.00 43.08 3.41
586 587 9.337396 TCCTAAAATATATGACGCACTTGATTT 57.663 29.630 0.00 0.00 0.00 2.17
587 588 8.902540 TCCTAAAATATATGACGCACTTGATT 57.097 30.769 0.00 0.00 0.00 2.57
589 590 7.441157 CCTTCCTAAAATATATGACGCACTTGA 59.559 37.037 0.00 0.00 0.00 3.02
590 591 7.441157 TCCTTCCTAAAATATATGACGCACTTG 59.559 37.037 0.00 0.00 0.00 3.16
609 610 0.326238 TACGCCATTCCCTCCTTCCT 60.326 55.000 0.00 0.00 0.00 3.36
642 643 4.772046 AAGTAACTATTATGCACGCGTG 57.228 40.909 34.01 34.01 0.00 5.34
661 662 9.244799 GTAAACTGAACCCAGAATTTGTAAAAG 57.755 33.333 0.00 0.00 43.02 2.27
686 687 2.025321 AGTTTCACCCTCACCAAGTTGT 60.025 45.455 1.45 0.00 0.00 3.32
687 688 2.654863 AGTTTCACCCTCACCAAGTTG 58.345 47.619 0.00 0.00 0.00 3.16
719 720 3.373130 GGTTTTTCCTATTTCTCGGTCGG 59.627 47.826 0.00 0.00 0.00 4.79
742 743 2.795329 TCTCAAGCCCATTTTCTCACC 58.205 47.619 0.00 0.00 0.00 4.02
882 892 9.676861 CAGGGAATGAAATCAGCAATAGATATA 57.323 33.333 0.00 0.00 0.00 0.86
955 965 1.589716 GCTCCGCCTTGTGCTGAAAT 61.590 55.000 0.00 0.00 38.05 2.17
978 988 1.735571 GTGTGCGTCACCGGAAATTAT 59.264 47.619 9.46 0.00 40.84 1.28
1152 1162 1.878069 CGCGTGCGGATCAAGATGA 60.878 57.895 6.30 0.00 35.56 2.92
1155 1165 1.153647 ATTCGCGTGCGGATCAAGA 60.154 52.632 14.89 0.00 40.25 3.02
1170 1180 2.750888 GGAGAACACCGCCGCATTC 61.751 63.158 0.00 0.00 0.00 2.67
1299 1309 3.342627 CGCTTCAACCCGACGCAA 61.343 61.111 0.00 0.00 38.79 4.85
1332 1342 2.290287 CCCGACATCCACCCTGACA 61.290 63.158 0.00 0.00 0.00 3.58
1603 1620 2.228582 TGGCAATTCATTGTGTTCGGAG 59.771 45.455 1.59 0.00 39.88 4.63
1606 1623 3.557577 TCTGGCAATTCATTGTGTTCG 57.442 42.857 1.59 0.00 39.88 3.95
1608 1625 3.322828 AGCTTCTGGCAATTCATTGTGTT 59.677 39.130 1.59 0.00 44.79 3.32
1612 1629 4.182693 TCAAGCTTCTGGCAATTCATTG 57.817 40.909 0.00 0.00 44.79 2.82
1655 1673 1.604593 GCCCTGCCAACACATCAGT 60.605 57.895 0.00 0.00 0.00 3.41
1699 1724 0.460311 CCGGAGCTCGACCAATACTT 59.540 55.000 7.83 0.00 42.43 2.24
1704 1729 2.970639 CTTCCGGAGCTCGACCAA 59.029 61.111 3.34 0.00 42.43 3.67
1727 1752 2.383855 CCATCTCCGTCTCCTTCTCTT 58.616 52.381 0.00 0.00 0.00 2.85
1728 1753 2.026905 GCCATCTCCGTCTCCTTCTCT 61.027 57.143 0.00 0.00 0.00 3.10
1917 1942 2.755876 TGCCAGCTCTCCGACGAT 60.756 61.111 0.00 0.00 0.00 3.73
2070 2095 0.326238 AGAACTCCCCGCCCTTATCA 60.326 55.000 0.00 0.00 0.00 2.15
2166 2194 2.581354 GACTGTCCCATGCTCGCT 59.419 61.111 0.00 0.00 0.00 4.93
2199 2227 1.714414 GCTGCAGCTCATCACGAAG 59.286 57.895 31.33 0.00 38.21 3.79
2322 2350 2.910479 ACACTGAGGTCGACGGCA 60.910 61.111 9.92 9.04 0.00 5.69
2379 2407 1.066858 CCAGCAGCCGTCTTCTTCTTA 60.067 52.381 0.00 0.00 0.00 2.10
2551 2580 1.180029 TCGTGTCTACAGGTTAGGCC 58.820 55.000 0.00 0.00 33.80 5.19
2552 2581 2.426024 TCATCGTGTCTACAGGTTAGGC 59.574 50.000 3.04 0.00 33.80 3.93
2553 2582 3.487042 CGTCATCGTGTCTACAGGTTAGG 60.487 52.174 3.04 0.00 33.80 2.69
2554 2583 3.373130 TCGTCATCGTGTCTACAGGTTAG 59.627 47.826 3.04 0.00 38.33 2.34
2555 2584 3.337358 TCGTCATCGTGTCTACAGGTTA 58.663 45.455 3.04 0.00 38.33 2.85
2556 2585 2.156917 TCGTCATCGTGTCTACAGGTT 58.843 47.619 3.04 0.00 38.33 3.50
2594 2623 2.282251 TCCTCTGTGCCTCGTCGT 60.282 61.111 0.00 0.00 0.00 4.34
2595 2624 2.179517 GTCCTCTGTGCCTCGTCG 59.820 66.667 0.00 0.00 0.00 5.12
2599 2628 2.664081 CCTGGGTCCTCTGTGCCTC 61.664 68.421 0.00 0.00 0.00 4.70
2608 2637 0.401395 TTGGAGTTGACCTGGGTCCT 60.401 55.000 16.07 7.63 43.97 3.85
2613 2642 1.308998 GTGTGTTGGAGTTGACCTGG 58.691 55.000 0.00 0.00 0.00 4.45
2618 2647 0.179067 GGGTCGTGTGTTGGAGTTGA 60.179 55.000 0.00 0.00 0.00 3.18
2641 2670 7.114247 ACAAAATCCATACAAAATTGACGTTCG 59.886 33.333 0.00 0.00 0.00 3.95
2643 2672 9.921637 ATACAAAATCCATACAAAATTGACGTT 57.078 25.926 0.00 0.00 0.00 3.99
2655 2684 8.943002 CCCGACCTAAATATACAAAATCCATAC 58.057 37.037 0.00 0.00 0.00 2.39
2657 2686 7.523415 ACCCGACCTAAATATACAAAATCCAT 58.477 34.615 0.00 0.00 0.00 3.41
2668 2697 4.283722 CAGCTCCTTACCCGACCTAAATAT 59.716 45.833 0.00 0.00 0.00 1.28
2670 2699 2.434702 CAGCTCCTTACCCGACCTAAAT 59.565 50.000 0.00 0.00 0.00 1.40
2679 2708 1.218316 CGGACACAGCTCCTTACCC 59.782 63.158 0.00 0.00 0.00 3.69
2690 2720 4.439426 GCAAATATACAAATGCCGGACACA 60.439 41.667 5.05 0.00 32.73 3.72
2721 2751 2.297315 TGCAAATGTACAAATGCCGGAA 59.703 40.909 24.84 0.00 38.00 4.30
2754 2784 4.700213 ACGAAAATCCATTAGTCAGTTGGG 59.300 41.667 0.00 0.00 0.00 4.12
2755 2785 5.643777 AGACGAAAATCCATTAGTCAGTTGG 59.356 40.000 0.00 0.00 33.65 3.77
2756 2786 6.402550 CCAGACGAAAATCCATTAGTCAGTTG 60.403 42.308 0.00 0.00 33.65 3.16
2757 2787 5.643777 CCAGACGAAAATCCATTAGTCAGTT 59.356 40.000 0.00 0.00 33.65 3.16
2758 2788 5.178797 CCAGACGAAAATCCATTAGTCAGT 58.821 41.667 0.00 0.00 33.65 3.41
2759 2789 4.034510 GCCAGACGAAAATCCATTAGTCAG 59.965 45.833 0.00 0.00 33.65 3.51
2760 2790 3.938963 GCCAGACGAAAATCCATTAGTCA 59.061 43.478 0.00 0.00 33.65 3.41
2761 2791 3.312697 GGCCAGACGAAAATCCATTAGTC 59.687 47.826 0.00 0.00 32.27 2.59
2762 2792 3.279434 GGCCAGACGAAAATCCATTAGT 58.721 45.455 0.00 0.00 0.00 2.24
2763 2793 2.287915 CGGCCAGACGAAAATCCATTAG 59.712 50.000 2.24 0.00 35.47 1.73
2764 2794 2.285083 CGGCCAGACGAAAATCCATTA 58.715 47.619 2.24 0.00 35.47 1.90
2765 2795 1.094785 CGGCCAGACGAAAATCCATT 58.905 50.000 2.24 0.00 35.47 3.16
2829 2859 1.604185 GCTCTAGCCGGCATGAACTAG 60.604 57.143 31.54 19.89 34.66 2.57
2850 2880 4.129737 CATGTGCTGGCTGCTGGC 62.130 66.667 17.45 10.40 43.37 4.85
2853 2883 0.253894 TGATACATGTGCTGGCTGCT 59.746 50.000 17.45 0.00 43.37 4.24
2856 2886 0.465097 GGCTGATACATGTGCTGGCT 60.465 55.000 9.11 0.00 0.00 4.75
2860 2890 3.912496 TTGTAGGCTGATACATGTGCT 57.088 42.857 9.11 0.00 35.65 4.40
2903 2933 2.322081 GGCCGTTCTTTGTGCGCTA 61.322 57.895 9.73 0.00 0.00 4.26
2914 2944 1.812571 AGACATGAAACATGGCCGTTC 59.187 47.619 13.06 0.00 0.00 3.95
2917 2947 2.352651 CACTAGACATGAAACATGGCCG 59.647 50.000 13.06 8.07 0.00 6.13
2924 2956 4.020128 AGGAAGACCCACTAGACATGAAAC 60.020 45.833 0.00 0.00 37.41 2.78
2925 2957 4.168101 AGGAAGACCCACTAGACATGAAA 58.832 43.478 0.00 0.00 37.41 2.69
2935 2967 1.550976 GATGAACGAGGAAGACCCACT 59.449 52.381 0.00 0.00 37.41 4.00
2937 2969 0.902531 GGATGAACGAGGAAGACCCA 59.097 55.000 0.00 0.00 37.41 4.51
2940 2972 0.179108 CGGGGATGAACGAGGAAGAC 60.179 60.000 0.00 0.00 0.00 3.01
2944 2976 2.682136 TGCGGGGATGAACGAGGA 60.682 61.111 0.00 0.00 0.00 3.71
2948 2980 1.911293 CTTGTGTGCGGGGATGAACG 61.911 60.000 0.00 0.00 0.00 3.95
2955 2987 1.003355 AGTCATCTTGTGTGCGGGG 60.003 57.895 0.00 0.00 0.00 5.73
2968 3000 6.598503 TGCTCCATCAAGATAATTGAGTCAT 58.401 36.000 0.00 0.00 0.00 3.06
2978 3010 6.484643 GCAAAAGTAGATGCTCCATCAAGATA 59.515 38.462 7.83 0.00 42.72 1.98
2996 3028 3.631250 TGGTTGGAGAAGAAGCAAAAGT 58.369 40.909 0.00 0.00 0.00 2.66
3012 3044 4.521256 TCCCCGAAAATAAGAAGTTGGTTG 59.479 41.667 0.00 0.00 0.00 3.77
3025 3057 1.303317 AGCAAGCGTCCCCGAAAAT 60.303 52.632 0.00 0.00 35.63 1.82
3031 3063 2.747855 CCTTGAGCAAGCGTCCCC 60.748 66.667 4.72 0.00 37.11 4.81
3036 3068 4.093952 CGTGGCCTTGAGCAAGCG 62.094 66.667 3.32 0.00 46.50 4.68
3037 3069 3.741476 CCGTGGCCTTGAGCAAGC 61.741 66.667 3.32 1.26 46.50 4.01
3048 3081 0.807667 CACTAGCTCATGACCGTGGC 60.808 60.000 0.00 0.00 0.00 5.01
3066 3101 2.054799 ACCAGAGTAAAAGAGGTGGCA 58.945 47.619 0.00 0.00 0.00 4.92
3079 3115 1.682854 CACCAATGCAAACACCAGAGT 59.317 47.619 0.00 0.00 0.00 3.24
3082 3118 0.600782 GCCACCAATGCAAACACCAG 60.601 55.000 0.00 0.00 0.00 4.00
3103 3139 0.889306 AGGAAGAAACTCGAGACCGG 59.111 55.000 21.68 0.00 36.24 5.28
3106 3142 3.741856 GTCCAAAGGAAGAAACTCGAGAC 59.258 47.826 21.68 9.99 31.38 3.36
3113 3149 2.806818 GAGACCGTCCAAAGGAAGAAAC 59.193 50.000 0.40 0.00 33.09 2.78
3114 3150 2.224450 GGAGACCGTCCAAAGGAAGAAA 60.224 50.000 0.40 0.00 46.10 2.52
3166 3202 3.099905 TGAAGAAGATCGACATGGAGGT 58.900 45.455 0.00 0.00 0.00 3.85
3179 3215 3.961480 TCAAGCTCCGAATGAAGAAGA 57.039 42.857 0.00 0.00 0.00 2.87
3187 3223 1.099879 GCCTGCATCAAGCTCCGAAT 61.100 55.000 0.00 0.00 45.94 3.34
3190 3226 3.207669 GGCCTGCATCAAGCTCCG 61.208 66.667 0.00 0.00 45.94 4.63
3202 3238 1.563410 AGAGGAGGAAATGAAGGCCTG 59.437 52.381 5.69 0.00 30.70 4.85
3215 3251 0.523519 GCGCCAAGAAAAAGAGGAGG 59.476 55.000 0.00 0.00 0.00 4.30
3222 3258 2.948979 TCAGAAGAAGCGCCAAGAAAAA 59.051 40.909 2.29 0.00 0.00 1.94
3238 3274 4.018415 CCCAAAAGGAGTAAGGGATCAGAA 60.018 45.833 0.00 0.00 42.25 3.02
3242 3278 3.265995 TGACCCAAAAGGAGTAAGGGATC 59.734 47.826 2.29 0.00 42.25 3.36
3250 3286 1.882352 GCACGATGACCCAAAAGGAGT 60.882 52.381 0.00 0.00 39.89 3.85
3267 3304 2.977054 CAAGAAACTTTGCAACGCAC 57.023 45.000 0.00 0.00 38.71 5.34
3292 3329 1.522355 CGTGATGCGGCATCCTTCT 60.522 57.895 33.26 5.84 39.87 2.85
3405 3442 3.411446 AGTTCAAAGATCAATGTGCCGA 58.589 40.909 0.00 0.00 0.00 5.54
3411 3448 3.258872 TGCCCCAAGTTCAAAGATCAATG 59.741 43.478 0.00 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.