Multiple sequence alignment - TraesCS6B01G326500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G326500 chr6B 100.000 3335 0 0 364 3698 576038776 576042110 0.000000e+00 6159
1 TraesCS6B01G326500 chr6B 100.000 160 0 0 1 160 576038413 576038572 2.790000e-76 296
2 TraesCS6B01G326500 chr6D 87.915 2623 173 59 555 3077 385693691 385696269 0.000000e+00 2955
3 TraesCS6B01G326500 chr6D 85.767 541 46 15 3175 3698 385696276 385696802 9.030000e-151 544
4 TraesCS6B01G326500 chr6A 87.588 2272 155 62 604 2806 530136000 530138213 0.000000e+00 2516
5 TraesCS6B01G326500 chr6A 81.441 458 65 12 3261 3698 530138773 530139230 1.260000e-94 357
6 TraesCS6B01G326500 chr6A 92.000 225 7 7 2801 3015 530138472 530138695 4.640000e-79 305
7 TraesCS6B01G326500 chr7B 88.669 909 69 20 1202 2094 314864921 314864031 0.000000e+00 1077
8 TraesCS6B01G326500 chr7B 88.261 903 73 20 1208 2094 395898410 395897525 0.000000e+00 1050
9 TraesCS6B01G326500 chr7B 97.938 97 2 0 3078 3174 742960353 742960257 6.350000e-38 169
10 TraesCS6B01G326500 chr7A 88.644 907 73 16 1202 2094 409801718 409800828 0.000000e+00 1077
11 TraesCS6B01G326500 chr7A 94.326 141 4 4 364 501 448480356 448480217 2.890000e-51 213
12 TraesCS6B01G326500 chr2B 78.146 453 67 16 1319 1759 290676992 290677424 3.660000e-65 259
13 TraesCS6B01G326500 chr2B 77.876 452 65 20 1323 1756 193136929 193136495 7.930000e-62 248
14 TraesCS6B01G326500 chr2B 97.938 97 2 0 3078 3174 328778982 328779078 6.350000e-38 169
15 TraesCS6B01G326500 chr4B 83.122 237 26 7 1323 1558 243845784 243845561 1.740000e-48 204
16 TraesCS6B01G326500 chr2A 90.728 151 14 0 1 151 745074590 745074740 6.260000e-48 202
17 TraesCS6B01G326500 chr2A 88.571 140 4 5 364 501 745074763 745074892 3.820000e-35 159
18 TraesCS6B01G326500 chrUn 97.938 97 2 0 3078 3174 206778984 206779080 6.350000e-38 169
19 TraesCS6B01G326500 chr4D 97.938 97 2 0 3078 3174 123272398 123272494 6.350000e-38 169
20 TraesCS6B01G326500 chr4D 97.938 97 2 0 3078 3174 123315787 123315883 6.350000e-38 169
21 TraesCS6B01G326500 chr4A 97.938 97 2 0 3078 3174 67500929 67500833 6.350000e-38 169
22 TraesCS6B01G326500 chr3A 97.938 97 2 0 3078 3174 653830553 653830649 6.350000e-38 169
23 TraesCS6B01G326500 chr1A 97.938 97 2 0 3078 3174 94685855 94685951 6.350000e-38 169
24 TraesCS6B01G326500 chr1B 92.857 112 5 2 3063 3174 672573786 672573678 3.820000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G326500 chr6B 576038413 576042110 3697 False 3227.500000 6159 100.000000 1 3698 2 chr6B.!!$F1 3697
1 TraesCS6B01G326500 chr6D 385693691 385696802 3111 False 1749.500000 2955 86.841000 555 3698 2 chr6D.!!$F1 3143
2 TraesCS6B01G326500 chr6A 530136000 530139230 3230 False 1059.333333 2516 87.009667 604 3698 3 chr6A.!!$F1 3094
3 TraesCS6B01G326500 chr7B 314864031 314864921 890 True 1077.000000 1077 88.669000 1202 2094 1 chr7B.!!$R1 892
4 TraesCS6B01G326500 chr7B 395897525 395898410 885 True 1050.000000 1050 88.261000 1208 2094 1 chr7B.!!$R2 886
5 TraesCS6B01G326500 chr7A 409800828 409801718 890 True 1077.000000 1077 88.644000 1202 2094 1 chr7A.!!$R1 892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 509 0.035739 GACAACGCTGGGTAGGGAAA 59.964 55.0 0.0 0.0 39.92 3.13 F
513 514 0.037734 CGCTGGGTAGGGAAAAACCT 59.962 55.0 0.0 0.0 44.75 3.50 F
996 1005 0.107654 CGAGGCGGAAGAAATCCCTT 60.108 55.0 0.0 0.0 46.39 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 2308 0.100682 GAGAGTCATACGCGCCTGAA 59.899 55.0 5.73 0.0 0.00 3.02 R
2505 2614 0.724453 CGTTTCGTTTGCCGGTGATG 60.724 55.0 1.90 0.0 37.11 3.07 R
2914 3309 0.107410 TTCACAAGCGTTCACACCCT 60.107 50.0 0.00 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.519441 CCAGGAGATGGGGCATGG 59.481 66.667 0.00 0.00 46.36 3.66
38 39 2.203451 CAGGAGATGGGGCATGGC 60.203 66.667 11.56 11.56 0.00 4.40
39 40 2.697263 AGGAGATGGGGCATGGCA 60.697 61.111 22.06 0.94 0.00 4.92
40 41 2.520260 GGAGATGGGGCATGGCAC 60.520 66.667 22.06 19.20 0.00 5.01
54 55 2.677524 GCACCTGCCCTTCATGCA 60.678 61.111 0.00 0.00 36.30 3.96
55 56 2.056223 GCACCTGCCCTTCATGCAT 61.056 57.895 0.00 0.00 38.22 3.96
56 57 1.610554 GCACCTGCCCTTCATGCATT 61.611 55.000 0.00 0.00 38.22 3.56
57 58 0.174845 CACCTGCCCTTCATGCATTG 59.825 55.000 0.00 0.00 38.22 2.82
58 59 0.040058 ACCTGCCCTTCATGCATTGA 59.960 50.000 0.00 0.00 38.22 2.57
59 60 0.458669 CCTGCCCTTCATGCATTGAC 59.541 55.000 0.00 0.00 38.22 3.18
60 61 0.099968 CTGCCCTTCATGCATTGACG 59.900 55.000 0.00 0.00 38.22 4.35
61 62 1.314534 TGCCCTTCATGCATTGACGG 61.315 55.000 0.00 5.63 42.17 4.79
62 63 1.434696 CCCTTCATGCATTGACGGC 59.565 57.895 0.00 0.00 41.38 5.68
63 64 1.434696 CCTTCATGCATTGACGGCC 59.565 57.895 0.00 0.00 37.00 6.13
64 65 1.063006 CTTCATGCATTGACGGCCG 59.937 57.895 26.86 26.86 32.84 6.13
65 66 2.924922 CTTCATGCATTGACGGCCGC 62.925 60.000 28.58 19.01 32.84 6.53
66 67 3.511595 CATGCATTGACGGCCGCT 61.512 61.111 28.58 13.18 0.00 5.52
67 68 3.204827 ATGCATTGACGGCCGCTC 61.205 61.111 28.58 21.79 0.00 5.03
89 90 2.260434 GCGTTAGCACCACGAGGA 59.740 61.111 5.68 0.00 44.35 3.71
90 91 2.092882 GCGTTAGCACCACGAGGAC 61.093 63.158 5.68 0.00 44.35 3.85
91 92 1.800315 CGTTAGCACCACGAGGACG 60.800 63.158 5.68 0.26 40.20 4.79
140 141 3.818787 GCAGGTTGCATGGCGGAG 61.819 66.667 0.00 0.00 44.26 4.63
141 142 2.046023 CAGGTTGCATGGCGGAGA 60.046 61.111 0.00 0.00 0.00 3.71
142 143 2.110967 CAGGTTGCATGGCGGAGAG 61.111 63.158 0.00 0.00 0.00 3.20
143 144 2.268920 GGTTGCATGGCGGAGAGA 59.731 61.111 0.00 0.00 0.00 3.10
144 145 1.817099 GGTTGCATGGCGGAGAGAG 60.817 63.158 0.00 0.00 0.00 3.20
145 146 1.219124 GTTGCATGGCGGAGAGAGA 59.781 57.895 0.00 0.00 0.00 3.10
146 147 0.179062 GTTGCATGGCGGAGAGAGAT 60.179 55.000 0.00 0.00 0.00 2.75
147 148 0.179065 TTGCATGGCGGAGAGAGATG 60.179 55.000 0.00 0.00 0.00 2.90
148 149 1.301558 GCATGGCGGAGAGAGATGG 60.302 63.158 0.00 0.00 0.00 3.51
149 150 1.370437 CATGGCGGAGAGAGATGGG 59.630 63.158 0.00 0.00 0.00 4.00
150 151 1.840650 ATGGCGGAGAGAGATGGGG 60.841 63.158 0.00 0.00 0.00 4.96
151 152 3.237741 GGCGGAGAGAGATGGGGG 61.238 72.222 0.00 0.00 0.00 5.40
152 153 2.123251 GCGGAGAGAGATGGGGGA 60.123 66.667 0.00 0.00 0.00 4.81
153 154 2.206536 GCGGAGAGAGATGGGGGAG 61.207 68.421 0.00 0.00 0.00 4.30
154 155 1.539165 CGGAGAGAGATGGGGGAGA 59.461 63.158 0.00 0.00 0.00 3.71
155 156 0.114168 CGGAGAGAGATGGGGGAGAT 59.886 60.000 0.00 0.00 0.00 2.75
156 157 1.643310 GGAGAGAGATGGGGGAGATG 58.357 60.000 0.00 0.00 0.00 2.90
157 158 1.643310 GAGAGAGATGGGGGAGATGG 58.357 60.000 0.00 0.00 0.00 3.51
158 159 0.193069 AGAGAGATGGGGGAGATGGG 59.807 60.000 0.00 0.00 0.00 4.00
159 160 0.839853 GAGAGATGGGGGAGATGGGG 60.840 65.000 0.00 0.00 0.00 4.96
388 389 3.379445 CCTACCCACGCCACGACT 61.379 66.667 0.00 0.00 0.00 4.18
389 390 2.654877 CTACCCACGCCACGACTT 59.345 61.111 0.00 0.00 0.00 3.01
390 391 1.005394 CTACCCACGCCACGACTTT 60.005 57.895 0.00 0.00 0.00 2.66
391 392 1.289109 CTACCCACGCCACGACTTTG 61.289 60.000 0.00 0.00 0.00 2.77
392 393 4.025401 CCCACGCCACGACTTTGC 62.025 66.667 0.00 0.00 0.00 3.68
393 394 4.025401 CCACGCCACGACTTTGCC 62.025 66.667 0.00 0.00 0.00 4.52
394 395 4.025401 CACGCCACGACTTTGCCC 62.025 66.667 0.00 0.00 0.00 5.36
433 434 3.787001 GCGAGGTGGGGAAGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
434 435 3.083997 CGAGGTGGGGAAGGGAGG 61.084 72.222 0.00 0.00 0.00 4.30
435 436 2.692741 GAGGTGGGGAAGGGAGGG 60.693 72.222 0.00 0.00 0.00 4.30
436 437 3.216371 AGGTGGGGAAGGGAGGGA 61.216 66.667 0.00 0.00 0.00 4.20
437 438 2.204244 GGTGGGGAAGGGAGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
438 439 2.309504 GGTGGGGAAGGGAGGGAAG 61.310 68.421 0.00 0.00 0.00 3.46
439 440 2.127297 TGGGGAAGGGAGGGAAGG 59.873 66.667 0.00 0.00 0.00 3.46
440 441 2.127528 GGGGAAGGGAGGGAAGGT 59.872 66.667 0.00 0.00 0.00 3.50
441 442 2.309504 GGGGAAGGGAGGGAAGGTG 61.310 68.421 0.00 0.00 0.00 4.00
442 443 2.309504 GGGAAGGGAGGGAAGGTGG 61.310 68.421 0.00 0.00 0.00 4.61
443 444 2.309504 GGAAGGGAGGGAAGGTGGG 61.310 68.421 0.00 0.00 0.00 4.61
444 445 1.229853 GAAGGGAGGGAAGGTGGGA 60.230 63.158 0.00 0.00 0.00 4.37
445 446 1.229984 AAGGGAGGGAAGGTGGGAG 60.230 63.158 0.00 0.00 0.00 4.30
446 447 3.412408 GGGAGGGAAGGTGGGAGC 61.412 72.222 0.00 0.00 0.00 4.70
447 448 2.610859 GGAGGGAAGGTGGGAGCA 60.611 66.667 0.00 0.00 0.00 4.26
448 449 2.674220 GGAGGGAAGGTGGGAGCAG 61.674 68.421 0.00 0.00 0.00 4.24
449 450 2.612115 AGGGAAGGTGGGAGCAGG 60.612 66.667 0.00 0.00 0.00 4.85
450 451 4.432741 GGGAAGGTGGGAGCAGGC 62.433 72.222 0.00 0.00 0.00 4.85
451 452 4.785453 GGAAGGTGGGAGCAGGCG 62.785 72.222 0.00 0.00 0.00 5.52
452 453 4.785453 GAAGGTGGGAGCAGGCGG 62.785 72.222 0.00 0.00 0.00 6.13
503 504 3.065306 TGGGACAACGCTGGGTAG 58.935 61.111 0.00 0.00 31.92 3.18
504 505 2.267961 GGGACAACGCTGGGTAGG 59.732 66.667 0.00 0.00 0.00 3.18
505 506 2.267961 GGACAACGCTGGGTAGGG 59.732 66.667 0.00 0.00 42.20 3.53
506 507 2.288025 GGACAACGCTGGGTAGGGA 61.288 63.158 0.00 0.00 39.92 4.20
507 508 1.675219 GACAACGCTGGGTAGGGAA 59.325 57.895 0.00 0.00 39.92 3.97
508 509 0.035739 GACAACGCTGGGTAGGGAAA 59.964 55.000 0.00 0.00 39.92 3.13
509 510 0.475044 ACAACGCTGGGTAGGGAAAA 59.525 50.000 0.00 0.00 39.92 2.29
510 511 1.133730 ACAACGCTGGGTAGGGAAAAA 60.134 47.619 0.00 0.00 39.92 1.94
511 512 1.268625 CAACGCTGGGTAGGGAAAAAC 59.731 52.381 0.00 0.00 39.92 2.43
512 513 0.251033 ACGCTGGGTAGGGAAAAACC 60.251 55.000 0.00 0.00 39.92 3.27
513 514 0.037734 CGCTGGGTAGGGAAAAACCT 59.962 55.000 0.00 0.00 44.75 3.50
514 515 1.279846 CGCTGGGTAGGGAAAAACCTA 59.720 52.381 0.00 0.00 42.09 3.08
515 516 2.290450 CGCTGGGTAGGGAAAAACCTAA 60.290 50.000 0.00 0.00 44.34 2.69
521 522 5.252586 GGTAGGGAAAAACCTAACTTCCT 57.747 43.478 0.17 0.00 45.49 3.36
522 523 5.251764 GGTAGGGAAAAACCTAACTTCCTC 58.748 45.833 0.17 0.00 45.49 3.71
523 524 4.383931 AGGGAAAAACCTAACTTCCTCC 57.616 45.455 0.00 0.00 39.65 4.30
524 525 3.725267 AGGGAAAAACCTAACTTCCTCCA 59.275 43.478 0.00 0.00 39.65 3.86
525 526 4.357097 AGGGAAAAACCTAACTTCCTCCAT 59.643 41.667 0.00 0.00 39.65 3.41
526 527 4.705507 GGGAAAAACCTAACTTCCTCCATC 59.294 45.833 0.00 0.00 38.94 3.51
527 528 4.705507 GGAAAAACCTAACTTCCTCCATCC 59.294 45.833 0.00 0.00 36.48 3.51
528 529 5.516768 GGAAAAACCTAACTTCCTCCATCCT 60.517 44.000 0.00 0.00 36.48 3.24
529 530 6.296836 GGAAAAACCTAACTTCCTCCATCCTA 60.297 42.308 0.00 0.00 36.48 2.94
530 531 6.910259 AAAACCTAACTTCCTCCATCCTAT 57.090 37.500 0.00 0.00 0.00 2.57
531 532 6.910259 AAACCTAACTTCCTCCATCCTATT 57.090 37.500 0.00 0.00 0.00 1.73
532 533 8.401955 AAAACCTAACTTCCTCCATCCTATTA 57.598 34.615 0.00 0.00 0.00 0.98
533 534 8.401955 AAACCTAACTTCCTCCATCCTATTAA 57.598 34.615 0.00 0.00 0.00 1.40
534 535 7.619512 ACCTAACTTCCTCCATCCTATTAAG 57.380 40.000 0.00 0.00 0.00 1.85
535 536 7.140304 ACCTAACTTCCTCCATCCTATTAAGT 58.860 38.462 0.00 0.00 0.00 2.24
536 537 7.290481 ACCTAACTTCCTCCATCCTATTAAGTC 59.710 40.741 0.00 0.00 0.00 3.01
537 538 5.793030 ACTTCCTCCATCCTATTAAGTCG 57.207 43.478 0.00 0.00 0.00 4.18
538 539 4.589374 ACTTCCTCCATCCTATTAAGTCGG 59.411 45.833 0.00 0.00 0.00 4.79
539 540 2.897969 TCCTCCATCCTATTAAGTCGGC 59.102 50.000 0.00 0.00 0.00 5.54
540 541 2.900546 CCTCCATCCTATTAAGTCGGCT 59.099 50.000 0.00 0.00 0.00 5.52
541 542 4.087182 CCTCCATCCTATTAAGTCGGCTA 58.913 47.826 0.00 0.00 0.00 3.93
542 543 4.527038 CCTCCATCCTATTAAGTCGGCTAA 59.473 45.833 0.00 0.00 0.00 3.09
543 544 5.011738 CCTCCATCCTATTAAGTCGGCTAAA 59.988 44.000 0.00 0.00 0.00 1.85
544 545 6.463897 CCTCCATCCTATTAAGTCGGCTAAAA 60.464 42.308 0.00 0.00 0.00 1.52
545 546 6.891388 TCCATCCTATTAAGTCGGCTAAAAA 58.109 36.000 0.00 0.00 0.00 1.94
576 577 6.525578 TTAGTTCTCGAAGCATCTTCCTAA 57.474 37.500 1.45 1.22 0.00 2.69
600 601 7.886629 AGCACTTTACATCATATTCATGGTT 57.113 32.000 0.00 0.00 32.61 3.67
666 667 1.597302 CCCAGCCTCTGCATCATCG 60.597 63.158 0.00 0.00 41.13 3.84
668 669 2.110627 AGCCTCTGCATCATCGCC 59.889 61.111 0.00 0.00 41.13 5.54
671 672 3.344215 CTCTGCATCATCGCCCGC 61.344 66.667 0.00 0.00 0.00 6.13
683 684 2.015627 CGCCCGCACACAACAAATG 61.016 57.895 0.00 0.00 0.00 2.32
687 688 2.126467 CCCGCACACAACAAATGAAAG 58.874 47.619 0.00 0.00 0.00 2.62
688 689 1.522258 CCGCACACAACAAATGAAAGC 59.478 47.619 0.00 0.00 0.00 3.51
713 715 7.218963 GCAACAATTAGATTAACTTGTGCTAGC 59.781 37.037 8.10 8.10 32.47 3.42
754 756 7.479352 TGGCAGAATAATTTGGATCAAGAAA 57.521 32.000 0.00 0.00 0.00 2.52
757 759 8.659491 GGCAGAATAATTTGGATCAAGAAAAAC 58.341 33.333 0.00 0.00 0.00 2.43
902 904 0.883153 ATATATACGGACGGCGCACA 59.117 50.000 10.83 0.00 0.00 4.57
957 961 3.244044 GCAAAGACACAGAGAAGAGAGGT 60.244 47.826 0.00 0.00 0.00 3.85
996 1005 0.107654 CGAGGCGGAAGAAATCCCTT 60.108 55.000 0.00 0.00 46.39 3.95
1005 1014 4.445448 CGGAAGAAATCCCTTGAGATGGAT 60.445 45.833 0.00 0.00 46.39 3.41
1084 1108 0.329596 GCTCCTGTTCCCCATGTTCT 59.670 55.000 0.00 0.00 0.00 3.01
1093 1117 6.126594 CCTGTTCCCCATGTTCTTAGGTAATA 60.127 42.308 0.00 0.00 0.00 0.98
1109 1133 4.287326 AGGTAATAAATAGGGCTGGCTCTC 59.713 45.833 0.00 0.00 0.00 3.20
1115 1139 2.595954 TAGGGCTGGCTCTCCTCTGG 62.596 65.000 0.00 0.00 32.46 3.86
1116 1140 4.173924 GGCTGGCTCTCCTCTGGC 62.174 72.222 0.00 0.00 0.00 4.85
1126 1155 0.539051 CTCCTCTGGCGTCCATTTCT 59.461 55.000 0.00 0.00 30.82 2.52
1127 1156 1.757118 CTCCTCTGGCGTCCATTTCTA 59.243 52.381 0.00 0.00 30.82 2.10
1183 1216 2.237392 CCTTCCTCTTCTTGATTCCGGT 59.763 50.000 0.00 0.00 0.00 5.28
1316 1349 0.456221 CTCCGAGACATACGCAGGTT 59.544 55.000 0.00 0.00 0.00 3.50
1318 1351 2.093890 TCCGAGACATACGCAGGTTAA 58.906 47.619 0.00 0.00 0.00 2.01
1431 1469 5.283294 TGTTCGTTGATTCTTTCTCACGTA 58.717 37.500 0.00 0.00 34.91 3.57
1460 1498 4.384537 GCCCTCCTTGCATATATATCAGCA 60.385 45.833 7.66 7.66 34.79 4.41
1487 1525 0.537371 CCCTTGGATTCGGGTATGCC 60.537 60.000 0.00 0.00 35.65 4.40
1505 1543 2.753029 GCCTCCACCTTGAGTGCT 59.247 61.111 0.00 0.00 45.83 4.40
1558 1596 2.629051 CAGACCGGTAATCCTTTGACC 58.371 52.381 7.34 0.00 0.00 4.02
1559 1597 2.236395 CAGACCGGTAATCCTTTGACCT 59.764 50.000 7.34 0.00 0.00 3.85
1560 1598 2.910977 AGACCGGTAATCCTTTGACCTT 59.089 45.455 7.34 0.00 0.00 3.50
1561 1599 3.329814 AGACCGGTAATCCTTTGACCTTT 59.670 43.478 7.34 0.00 0.00 3.11
1562 1600 3.418047 ACCGGTAATCCTTTGACCTTTG 58.582 45.455 4.49 0.00 0.00 2.77
1563 1601 3.073356 ACCGGTAATCCTTTGACCTTTGA 59.927 43.478 4.49 0.00 0.00 2.69
1564 1602 3.439129 CCGGTAATCCTTTGACCTTTGAC 59.561 47.826 0.00 0.00 0.00 3.18
1576 1614 7.201857 CCTTTGACCTTTGACAGAGAATTCTTT 60.202 37.037 9.87 0.01 0.00 2.52
1610 1658 9.499585 GTTTTCTTCTGTGTTAAGTTTAAGGTC 57.500 33.333 0.00 0.00 0.00 3.85
1632 1681 3.244422 CCCTGGTTACTGTTAGCTTGTGA 60.244 47.826 0.00 0.00 0.00 3.58
1646 1695 2.783135 CTTGTGACTGCAACATACCCT 58.217 47.619 0.00 0.00 0.00 4.34
1679 1728 2.563179 AGAAGAGAAGGCAACGCTAGAA 59.437 45.455 0.00 0.00 46.39 2.10
1680 1729 2.371910 AGAGAAGGCAACGCTAGAAC 57.628 50.000 0.00 0.00 46.39 3.01
1681 1730 0.992802 GAGAAGGCAACGCTAGAACG 59.007 55.000 0.00 0.00 46.39 3.95
1682 1731 1.014564 AGAAGGCAACGCTAGAACGC 61.015 55.000 0.00 0.00 46.39 4.84
1707 1763 1.346395 TCTTTCTGCGGGTTTGAGCTA 59.654 47.619 0.00 0.00 0.00 3.32
1739 1800 2.957006 GCTGTGTTAGGCTAGCTACCTA 59.043 50.000 15.72 14.50 38.81 3.08
1745 1806 2.407340 AGGCTAGCTACCTAAGGCAT 57.593 50.000 15.72 0.00 35.10 4.40
1755 1816 5.125578 AGCTACCTAAGGCATAAAGTTTTGC 59.874 40.000 11.84 11.84 38.14 3.68
1757 1818 5.391312 ACCTAAGGCATAAAGTTTTGCTG 57.609 39.130 16.80 5.77 38.88 4.41
1766 1827 2.559998 AAGTTTTGCTGTGTGGAACG 57.440 45.000 0.00 0.00 42.39 3.95
1796 1857 4.953579 ACCTTTTACTGTGCTTTCTCCAAA 59.046 37.500 0.00 0.00 0.00 3.28
1867 1930 1.153349 GATCCCGGGTCTGACAAGC 60.153 63.158 22.86 0.00 0.00 4.01
2000 2085 3.188873 CGGGCATGACTAGCTAGTACTAC 59.811 52.174 26.11 14.13 36.50 2.73
2010 2098 8.976353 TGACTAGCTAGTACTACTACTGTACTT 58.024 37.037 26.11 0.00 45.60 2.24
2075 2163 3.536158 TCAAATCAAAGAAACCGAGCG 57.464 42.857 0.00 0.00 0.00 5.03
2154 2251 5.389859 TGAAATTCGTGCAGGAAAATGAT 57.610 34.783 24.17 6.17 0.00 2.45
2202 2299 0.632835 ACATCCACAAGGGCATCCAT 59.367 50.000 0.00 0.00 36.21 3.41
2211 2308 2.433446 GGCATCCATGGGAGCGAT 59.567 61.111 13.02 0.00 34.05 4.58
2229 2326 0.747255 ATTCAGGCGCGTATGACTCT 59.253 50.000 8.43 0.00 0.00 3.24
2259 2357 2.536761 AGTAAAGCACACGCCAACTA 57.463 45.000 0.00 0.00 39.83 2.24
2260 2358 2.413837 AGTAAAGCACACGCCAACTAG 58.586 47.619 0.00 0.00 39.83 2.57
2261 2359 2.140717 GTAAAGCACACGCCAACTAGT 58.859 47.619 0.00 0.00 39.83 2.57
2274 2372 4.508662 GCCAACTAGTACTTCATCTGCTT 58.491 43.478 0.00 0.00 0.00 3.91
2282 2380 5.615289 AGTACTTCATCTGCTTCAACTTGT 58.385 37.500 0.00 0.00 0.00 3.16
2332 2437 1.212751 GCATTGCAGGTTCGTTCCC 59.787 57.895 3.15 0.00 0.00 3.97
2335 2440 0.673644 ATTGCAGGTTCGTTCCCGAG 60.674 55.000 0.00 0.00 45.24 4.63
2350 2455 2.261671 GAGAAGTTCGAGGCGGCA 59.738 61.111 13.08 0.00 0.00 5.69
2422 2527 1.589993 CGAGCTGATCACCGCGAAT 60.590 57.895 8.23 0.00 0.00 3.34
2454 2559 1.718757 GACTACGCGGGATGGTACGT 61.719 60.000 12.47 0.00 42.22 3.57
2465 2570 1.262417 GATGGTACGTGCGATCTACGA 59.738 52.381 18.74 2.08 43.82 3.43
2469 2574 1.063174 GTACGTGCGATCTACGACCTT 59.937 52.381 21.26 6.09 43.82 3.50
2478 2583 4.599047 CGATCTACGACCTTTCCTGTTAG 58.401 47.826 0.00 0.00 45.77 2.34
2479 2584 4.096081 CGATCTACGACCTTTCCTGTTAGT 59.904 45.833 0.00 0.00 45.77 2.24
2480 2585 5.295292 CGATCTACGACCTTTCCTGTTAGTA 59.705 44.000 0.00 0.00 45.77 1.82
2482 2587 6.690194 TCTACGACCTTTCCTGTTAGTATC 57.310 41.667 0.00 0.00 0.00 2.24
2484 2589 7.568349 TCTACGACCTTTCCTGTTAGTATCTA 58.432 38.462 0.00 0.00 0.00 1.98
2488 2597 6.095160 CGACCTTTCCTGTTAGTATCTACTGT 59.905 42.308 0.06 0.00 37.10 3.55
2497 2606 9.875675 CCTGTTAGTATCTACTGTACGTAATTC 57.124 37.037 0.00 0.00 37.10 2.17
2505 2614 4.715527 ACTGTACGTAATTCTCAGACCC 57.284 45.455 14.88 0.00 0.00 4.46
2506 2615 4.084287 ACTGTACGTAATTCTCAGACCCA 58.916 43.478 14.88 0.00 0.00 4.51
2507 2616 4.710375 ACTGTACGTAATTCTCAGACCCAT 59.290 41.667 14.88 0.00 0.00 4.00
2508 2617 5.163540 ACTGTACGTAATTCTCAGACCCATC 60.164 44.000 14.88 0.00 0.00 3.51
2509 2618 4.707934 TGTACGTAATTCTCAGACCCATCA 59.292 41.667 0.00 0.00 0.00 3.07
2510 2619 4.124851 ACGTAATTCTCAGACCCATCAC 57.875 45.455 0.00 0.00 0.00 3.06
2530 2641 2.981969 GGCAAACGAAACGACGATG 58.018 52.632 0.00 7.57 37.03 3.84
2531 2642 0.509499 GGCAAACGAAACGACGATGA 59.491 50.000 0.00 0.00 37.03 2.92
2532 2643 1.127951 GGCAAACGAAACGACGATGAT 59.872 47.619 0.00 0.00 37.03 2.45
2536 2647 4.664640 GCAAACGAAACGACGATGATGTAA 60.665 41.667 0.00 0.00 37.03 2.41
2566 2677 4.052229 CGTCGGCGGAGTGGAAGT 62.052 66.667 7.21 0.00 0.00 3.01
2676 2787 2.430610 GCAGGAGCGGAGGACATCT 61.431 63.158 0.00 0.00 0.00 2.90
2677 2788 1.109920 GCAGGAGCGGAGGACATCTA 61.110 60.000 0.00 0.00 0.00 1.98
2681 2795 2.096248 GGAGCGGAGGACATCTATAGG 58.904 57.143 0.00 0.00 0.00 2.57
2791 2915 2.105128 GATGCGTCGCTGGCTAGT 59.895 61.111 19.50 0.00 0.00 2.57
2868 3256 1.657487 CGCCACATAGCTACGGACG 60.657 63.158 9.37 8.33 0.00 4.79
2886 3281 4.261489 CGGACGGTACTATACTGCTGAATT 60.261 45.833 0.00 0.00 38.64 2.17
2891 3286 7.723324 ACGGTACTATACTGCTGAATTAATGT 58.277 34.615 0.00 0.00 38.64 2.71
2989 3398 4.380843 TGTGTCCTGTGGATATGGTTTT 57.619 40.909 0.00 0.00 32.73 2.43
3025 3434 2.358737 ACTTGCTAGGCGGTGCAC 60.359 61.111 8.80 8.80 39.05 4.57
3027 3436 2.047274 TTGCTAGGCGGTGCACTC 60.047 61.111 17.98 8.90 39.05 3.51
3077 3492 3.022406 CGTTGTAACTAGCCTCCTAGGT 58.978 50.000 9.08 0.00 44.37 3.08
3079 3494 2.385803 TGTAACTAGCCTCCTAGGTGC 58.614 52.381 9.08 12.97 41.62 5.01
3080 3495 2.385803 GTAACTAGCCTCCTAGGTGCA 58.614 52.381 22.32 11.20 41.62 4.57
3081 3496 1.490574 AACTAGCCTCCTAGGTGCAG 58.509 55.000 22.32 18.82 44.37 4.41
3082 3497 0.336737 ACTAGCCTCCTAGGTGCAGT 59.663 55.000 22.32 19.27 44.37 4.40
3083 3498 0.749649 CTAGCCTCCTAGGTGCAGTG 59.250 60.000 22.32 11.39 37.80 3.66
3084 3499 0.335019 TAGCCTCCTAGGTGCAGTGA 59.665 55.000 22.32 7.13 37.80 3.41
3085 3500 0.975040 AGCCTCCTAGGTGCAGTGAG 60.975 60.000 22.32 6.61 37.80 3.51
3086 3501 1.519719 CCTCCTAGGTGCAGTGAGC 59.480 63.158 9.08 0.00 45.96 4.26
3104 3519 8.180267 GCAGTGAGCATATTATCATAAACATCC 58.820 37.037 0.00 0.00 44.79 3.51
3105 3520 8.671921 CAGTGAGCATATTATCATAAACATCCC 58.328 37.037 0.00 0.00 0.00 3.85
3106 3521 8.609483 AGTGAGCATATTATCATAAACATCCCT 58.391 33.333 0.00 0.00 0.00 4.20
3107 3522 8.887717 GTGAGCATATTATCATAAACATCCCTC 58.112 37.037 0.00 0.00 0.00 4.30
3108 3523 8.605065 TGAGCATATTATCATAAACATCCCTCA 58.395 33.333 0.00 0.00 0.00 3.86
3109 3524 8.798859 AGCATATTATCATAAACATCCCTCAC 57.201 34.615 0.00 0.00 0.00 3.51
3110 3525 7.550551 AGCATATTATCATAAACATCCCTCACG 59.449 37.037 0.00 0.00 0.00 4.35
3111 3526 7.549134 GCATATTATCATAAACATCCCTCACGA 59.451 37.037 0.00 0.00 0.00 4.35
3112 3527 9.605275 CATATTATCATAAACATCCCTCACGAT 57.395 33.333 0.00 0.00 0.00 3.73
3115 3530 4.883083 TCATAAACATCCCTCACGATAGC 58.117 43.478 0.00 0.00 42.67 2.97
3116 3531 2.225068 AAACATCCCTCACGATAGCG 57.775 50.000 0.00 0.00 44.79 4.26
3117 3532 1.399714 AACATCCCTCACGATAGCGA 58.600 50.000 7.69 0.00 41.64 4.93
3118 3533 1.399714 ACATCCCTCACGATAGCGAA 58.600 50.000 7.69 0.00 41.64 4.70
3119 3534 1.067212 ACATCCCTCACGATAGCGAAC 59.933 52.381 7.69 0.00 41.64 3.95
3120 3535 1.338337 CATCCCTCACGATAGCGAACT 59.662 52.381 7.69 0.00 41.64 3.01
3121 3536 1.471119 TCCCTCACGATAGCGAACTT 58.529 50.000 7.69 0.00 41.64 2.66
3122 3537 1.134367 TCCCTCACGATAGCGAACTTG 59.866 52.381 7.69 0.00 41.64 3.16
3123 3538 1.134367 CCCTCACGATAGCGAACTTGA 59.866 52.381 7.69 0.00 41.64 3.02
3124 3539 2.416836 CCCTCACGATAGCGAACTTGAA 60.417 50.000 7.69 0.00 41.64 2.69
3125 3540 2.854777 CCTCACGATAGCGAACTTGAAG 59.145 50.000 7.69 0.00 41.64 3.02
3126 3541 3.427638 CCTCACGATAGCGAACTTGAAGA 60.428 47.826 7.69 0.00 41.64 2.87
3127 3542 4.166523 CTCACGATAGCGAACTTGAAGAA 58.833 43.478 7.69 0.00 41.64 2.52
3128 3543 4.166523 TCACGATAGCGAACTTGAAGAAG 58.833 43.478 7.69 0.00 41.64 2.85
3129 3544 4.082949 TCACGATAGCGAACTTGAAGAAGA 60.083 41.667 7.69 0.00 41.64 2.87
3130 3545 4.621460 CACGATAGCGAACTTGAAGAAGAA 59.379 41.667 7.69 0.00 41.64 2.52
3131 3546 4.859798 ACGATAGCGAACTTGAAGAAGAAG 59.140 41.667 7.69 0.00 41.64 2.85
3132 3547 4.259610 CGATAGCGAACTTGAAGAAGAAGC 60.260 45.833 0.00 0.00 40.82 3.86
3133 3548 3.118905 AGCGAACTTGAAGAAGAAGCT 57.881 42.857 0.00 0.00 34.44 3.74
3134 3549 2.805099 AGCGAACTTGAAGAAGAAGCTG 59.195 45.455 0.00 0.00 36.30 4.24
3135 3550 2.545946 GCGAACTTGAAGAAGAAGCTGT 59.454 45.455 0.00 0.00 32.98 4.40
3136 3551 3.002759 GCGAACTTGAAGAAGAAGCTGTT 59.997 43.478 0.00 0.00 32.98 3.16
3137 3552 4.496507 GCGAACTTGAAGAAGAAGCTGTTT 60.497 41.667 0.00 0.00 32.98 2.83
3138 3553 5.201181 CGAACTTGAAGAAGAAGCTGTTTC 58.799 41.667 0.00 0.00 35.97 2.78
3139 3554 4.802876 ACTTGAAGAAGAAGCTGTTTCG 57.197 40.909 0.00 0.00 40.86 3.46
3140 3555 4.442706 ACTTGAAGAAGAAGCTGTTTCGA 58.557 39.130 0.00 0.00 40.86 3.71
3141 3556 4.271291 ACTTGAAGAAGAAGCTGTTTCGAC 59.729 41.667 0.00 0.00 40.86 4.20
3142 3557 3.792401 TGAAGAAGAAGCTGTTTCGACA 58.208 40.909 0.00 0.00 40.86 4.35
3143 3558 4.380531 TGAAGAAGAAGCTGTTTCGACAT 58.619 39.130 0.00 0.00 40.86 3.06
3144 3559 4.449068 TGAAGAAGAAGCTGTTTCGACATC 59.551 41.667 0.00 1.65 40.86 3.06
3145 3560 4.264460 AGAAGAAGCTGTTTCGACATCT 57.736 40.909 0.00 0.23 40.86 2.90
3146 3561 5.392767 AGAAGAAGCTGTTTCGACATCTA 57.607 39.130 0.00 0.00 40.86 1.98
3147 3562 5.164954 AGAAGAAGCTGTTTCGACATCTAC 58.835 41.667 0.00 0.00 40.86 2.59
3148 3563 4.792521 AGAAGCTGTTTCGACATCTACT 57.207 40.909 0.00 0.00 40.86 2.57
3149 3564 5.140747 AGAAGCTGTTTCGACATCTACTT 57.859 39.130 0.00 0.00 40.86 2.24
3150 3565 5.542779 AGAAGCTGTTTCGACATCTACTTT 58.457 37.500 0.00 0.00 40.86 2.66
3151 3566 6.688578 AGAAGCTGTTTCGACATCTACTTTA 58.311 36.000 0.00 0.00 40.86 1.85
3152 3567 7.324178 AGAAGCTGTTTCGACATCTACTTTAT 58.676 34.615 0.00 0.00 40.86 1.40
3153 3568 7.489757 AGAAGCTGTTTCGACATCTACTTTATC 59.510 37.037 0.00 0.00 40.86 1.75
3154 3569 6.043411 AGCTGTTTCGACATCTACTTTATCC 58.957 40.000 0.00 0.00 0.00 2.59
3155 3570 5.234543 GCTGTTTCGACATCTACTTTATCCC 59.765 44.000 0.00 0.00 0.00 3.85
3156 3571 6.288941 TGTTTCGACATCTACTTTATCCCA 57.711 37.500 0.00 0.00 0.00 4.37
3157 3572 6.703319 TGTTTCGACATCTACTTTATCCCAA 58.297 36.000 0.00 0.00 0.00 4.12
3158 3573 6.816640 TGTTTCGACATCTACTTTATCCCAAG 59.183 38.462 0.00 0.00 0.00 3.61
3159 3574 6.540438 TTCGACATCTACTTTATCCCAAGT 57.460 37.500 0.00 0.00 40.28 3.16
3160 3575 5.902681 TCGACATCTACTTTATCCCAAGTG 58.097 41.667 0.00 0.00 37.57 3.16
3161 3576 4.508124 CGACATCTACTTTATCCCAAGTGC 59.492 45.833 0.00 0.00 37.57 4.40
3162 3577 5.428253 GACATCTACTTTATCCCAAGTGCA 58.572 41.667 0.00 0.00 37.57 4.57
3163 3578 5.815581 ACATCTACTTTATCCCAAGTGCAA 58.184 37.500 0.00 0.00 37.57 4.08
3164 3579 6.426587 ACATCTACTTTATCCCAAGTGCAAT 58.573 36.000 0.00 0.00 37.57 3.56
3165 3580 7.573710 ACATCTACTTTATCCCAAGTGCAATA 58.426 34.615 0.00 0.00 37.57 1.90
3166 3581 8.052748 ACATCTACTTTATCCCAAGTGCAATAA 58.947 33.333 0.00 0.00 37.57 1.40
3167 3582 9.071276 CATCTACTTTATCCCAAGTGCAATAAT 57.929 33.333 0.00 0.00 37.57 1.28
3168 3583 8.450578 TCTACTTTATCCCAAGTGCAATAATG 57.549 34.615 0.00 0.00 37.57 1.90
3236 3660 6.043243 ACCCCATGGTAACTATAATCAGTGAG 59.957 42.308 11.73 0.00 45.45 3.51
3237 3661 5.934625 CCCATGGTAACTATAATCAGTGAGC 59.065 44.000 11.73 0.00 37.61 4.26
3242 3666 5.398711 GGTAACTATAATCAGTGAGCGTTCG 59.601 44.000 0.00 0.00 0.00 3.95
3243 3667 3.372954 ACTATAATCAGTGAGCGTTCGC 58.627 45.455 9.24 9.24 0.00 4.70
3244 3668 2.586258 ATAATCAGTGAGCGTTCGCT 57.414 45.000 19.46 19.46 44.81 4.93
3245 3669 3.710326 ATAATCAGTGAGCGTTCGCTA 57.290 42.857 19.41 4.44 42.13 4.26
3259 3683 3.190874 GTTCGCTAGGAAGGATGACAAG 58.809 50.000 0.00 0.00 34.69 3.16
3268 3692 2.479566 AGGATGACAAGTGCGAACAT 57.520 45.000 0.00 0.00 0.00 2.71
3269 3693 2.350522 AGGATGACAAGTGCGAACATC 58.649 47.619 0.00 0.00 37.29 3.06
3299 3723 3.926616 ACTTTAGTTGTCACGAGGATGG 58.073 45.455 0.00 0.00 0.00 3.51
3323 3747 5.473039 GCAAGGATGACAATTTTAGCTTGT 58.527 37.500 0.00 0.00 39.46 3.16
3388 3815 2.673196 CGACGCTCGCTAACTAAAAC 57.327 50.000 0.00 0.00 31.14 2.43
3393 3820 2.347731 GCTCGCTAACTAAAACTGCCT 58.652 47.619 0.00 0.00 0.00 4.75
3399 3826 5.049680 TCGCTAACTAAAACTGCCTTGAAAG 60.050 40.000 0.00 0.00 0.00 2.62
3420 3848 0.806102 CGTTCGCGATGTCATCCCTT 60.806 55.000 10.88 0.00 44.71 3.95
3421 3849 1.535226 CGTTCGCGATGTCATCCCTTA 60.535 52.381 10.88 0.00 44.71 2.69
3423 3851 1.399714 TCGCGATGTCATCCCTTACT 58.600 50.000 3.71 0.00 0.00 2.24
3425 3853 3.154710 TCGCGATGTCATCCCTTACTAT 58.845 45.455 3.71 0.00 0.00 2.12
3426 3854 3.572682 TCGCGATGTCATCCCTTACTATT 59.427 43.478 3.71 0.00 0.00 1.73
3456 3898 6.895782 TGGGTAAAACAATATCCTACTCCAG 58.104 40.000 0.00 0.00 0.00 3.86
3503 3949 2.437651 TGATGTTTGTCTGTGTCCTCCA 59.562 45.455 0.00 0.00 0.00 3.86
3575 4024 0.804156 GCTAGGTCGCTGTCAGCTTC 60.804 60.000 22.13 14.00 39.60 3.86
3604 4053 1.807886 GCATCCTTTGCCTGCTGAG 59.192 57.895 0.00 0.00 46.15 3.35
3616 4065 1.543429 CCTGCTGAGAAAGGTTCCGTT 60.543 52.381 0.00 0.00 0.00 4.44
3687 4139 3.809832 GCTGTTTAGAAACTGTGCTCAGA 59.190 43.478 21.96 0.00 43.76 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.519441 CCATGCCCCATCTCCTGG 59.481 66.667 0.00 0.00 45.51 4.45
21 22 2.203451 GCCATGCCCCATCTCCTG 60.203 66.667 0.00 0.00 0.00 3.86
22 23 2.697263 TGCCATGCCCCATCTCCT 60.697 61.111 0.00 0.00 0.00 3.69
23 24 2.520260 GTGCCATGCCCCATCTCC 60.520 66.667 0.00 0.00 0.00 3.71
24 25 2.520260 GGTGCCATGCCCCATCTC 60.520 66.667 0.00 0.00 0.00 2.75
25 26 3.025599 AGGTGCCATGCCCCATCT 61.026 61.111 0.00 0.00 0.00 2.90
26 27 2.836360 CAGGTGCCATGCCCCATC 60.836 66.667 0.00 0.00 0.00 3.51
37 38 1.610554 AATGCATGAAGGGCAGGTGC 61.611 55.000 0.00 0.00 45.68 5.01
38 39 0.174845 CAATGCATGAAGGGCAGGTG 59.825 55.000 0.00 0.00 45.68 4.00
39 40 0.040058 TCAATGCATGAAGGGCAGGT 59.960 50.000 0.00 0.00 45.68 4.00
40 41 0.458669 GTCAATGCATGAAGGGCAGG 59.541 55.000 0.00 0.00 45.68 4.85
41 42 0.099968 CGTCAATGCATGAAGGGCAG 59.900 55.000 0.00 0.00 45.68 4.85
42 43 2.182496 CGTCAATGCATGAAGGGCA 58.818 52.632 0.00 0.00 46.66 5.36
46 47 1.063006 CGGCCGTCAATGCATGAAG 59.937 57.895 19.50 2.64 40.50 3.02
47 48 3.050166 GCGGCCGTCAATGCATGAA 62.050 57.895 28.70 0.00 40.50 2.57
48 49 3.507924 GCGGCCGTCAATGCATGA 61.508 61.111 28.70 0.00 35.05 3.07
49 50 3.459378 GAGCGGCCGTCAATGCATG 62.459 63.158 28.70 0.00 0.00 4.06
50 51 3.204827 GAGCGGCCGTCAATGCAT 61.205 61.111 28.70 0.00 0.00 3.96
65 66 4.832608 GGTGCTAACGCCCCGGAG 62.833 72.222 0.73 0.00 40.88 4.63
69 70 4.382320 TCGTGGTGCTAACGCCCC 62.382 66.667 0.00 0.00 46.63 5.80
70 71 2.813908 CTCGTGGTGCTAACGCCC 60.814 66.667 0.00 0.00 46.63 6.13
72 73 2.092882 GTCCTCGTGGTGCTAACGC 61.093 63.158 2.99 0.00 40.80 4.84
73 74 1.800315 CGTCCTCGTGGTGCTAACG 60.800 63.158 2.99 1.93 42.36 3.18
74 75 4.164252 CGTCCTCGTGGTGCTAAC 57.836 61.111 2.99 0.00 34.23 2.34
84 85 0.964358 ACTCCCCACTTACGTCCTCG 60.964 60.000 0.00 0.00 43.34 4.63
85 86 1.204231 GAACTCCCCACTTACGTCCTC 59.796 57.143 0.00 0.00 0.00 3.71
86 87 1.264295 GAACTCCCCACTTACGTCCT 58.736 55.000 0.00 0.00 0.00 3.85
87 88 0.248565 GGAACTCCCCACTTACGTCC 59.751 60.000 0.00 0.00 0.00 4.79
88 89 0.971386 TGGAACTCCCCACTTACGTC 59.029 55.000 0.00 0.00 34.29 4.34
89 90 3.152662 TGGAACTCCCCACTTACGT 57.847 52.632 0.00 0.00 34.29 3.57
123 124 3.818787 CTCCGCCATGCAACCTGC 61.819 66.667 0.00 0.00 45.29 4.85
124 125 2.046023 TCTCCGCCATGCAACCTG 60.046 61.111 0.00 0.00 0.00 4.00
125 126 2.249413 CTCTCTCCGCCATGCAACCT 62.249 60.000 0.00 0.00 0.00 3.50
126 127 1.817099 CTCTCTCCGCCATGCAACC 60.817 63.158 0.00 0.00 0.00 3.77
127 128 0.179062 ATCTCTCTCCGCCATGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
128 129 0.179065 CATCTCTCTCCGCCATGCAA 60.179 55.000 0.00 0.00 0.00 4.08
129 130 1.444672 CATCTCTCTCCGCCATGCA 59.555 57.895 0.00 0.00 0.00 3.96
130 131 1.301558 CCATCTCTCTCCGCCATGC 60.302 63.158 0.00 0.00 0.00 4.06
131 132 1.370437 CCCATCTCTCTCCGCCATG 59.630 63.158 0.00 0.00 0.00 3.66
132 133 1.840650 CCCCATCTCTCTCCGCCAT 60.841 63.158 0.00 0.00 0.00 4.40
133 134 2.444706 CCCCATCTCTCTCCGCCA 60.445 66.667 0.00 0.00 0.00 5.69
134 135 3.237741 CCCCCATCTCTCTCCGCC 61.238 72.222 0.00 0.00 0.00 6.13
135 136 2.123251 TCCCCCATCTCTCTCCGC 60.123 66.667 0.00 0.00 0.00 5.54
136 137 0.114168 ATCTCCCCCATCTCTCTCCG 59.886 60.000 0.00 0.00 0.00 4.63
137 138 1.643310 CATCTCCCCCATCTCTCTCC 58.357 60.000 0.00 0.00 0.00 3.71
138 139 1.643310 CCATCTCCCCCATCTCTCTC 58.357 60.000 0.00 0.00 0.00 3.20
139 140 0.193069 CCCATCTCCCCCATCTCTCT 59.807 60.000 0.00 0.00 0.00 3.10
140 141 0.839853 CCCCATCTCCCCCATCTCTC 60.840 65.000 0.00 0.00 0.00 3.20
141 142 1.241327 CCCCATCTCCCCCATCTCT 59.759 63.158 0.00 0.00 0.00 3.10
142 143 3.913107 CCCCATCTCCCCCATCTC 58.087 66.667 0.00 0.00 0.00 2.75
371 372 2.444700 AAAGTCGTGGCGTGGGTAGG 62.445 60.000 0.00 0.00 0.00 3.18
372 373 1.005394 AAAGTCGTGGCGTGGGTAG 60.005 57.895 0.00 0.00 0.00 3.18
373 374 1.301087 CAAAGTCGTGGCGTGGGTA 60.301 57.895 0.00 0.00 0.00 3.69
374 375 2.590575 CAAAGTCGTGGCGTGGGT 60.591 61.111 0.00 0.00 0.00 4.51
375 376 4.025401 GCAAAGTCGTGGCGTGGG 62.025 66.667 0.00 0.00 0.00 4.61
376 377 4.025401 GGCAAAGTCGTGGCGTGG 62.025 66.667 0.00 0.00 34.03 4.94
377 378 4.025401 GGGCAAAGTCGTGGCGTG 62.025 66.667 0.00 0.00 44.73 5.34
416 417 3.787001 CTCCCTTCCCCACCTCGC 61.787 72.222 0.00 0.00 0.00 5.03
417 418 3.083997 CCTCCCTTCCCCACCTCG 61.084 72.222 0.00 0.00 0.00 4.63
418 419 2.692741 CCCTCCCTTCCCCACCTC 60.693 72.222 0.00 0.00 0.00 3.85
419 420 2.789979 CTTCCCTCCCTTCCCCACCT 62.790 65.000 0.00 0.00 0.00 4.00
420 421 2.204244 TTCCCTCCCTTCCCCACC 60.204 66.667 0.00 0.00 0.00 4.61
421 422 2.309504 CCTTCCCTCCCTTCCCCAC 61.310 68.421 0.00 0.00 0.00 4.61
422 423 2.127297 CCTTCCCTCCCTTCCCCA 59.873 66.667 0.00 0.00 0.00 4.96
423 424 2.127528 ACCTTCCCTCCCTTCCCC 59.872 66.667 0.00 0.00 0.00 4.81
424 425 2.309504 CCACCTTCCCTCCCTTCCC 61.310 68.421 0.00 0.00 0.00 3.97
425 426 2.309504 CCCACCTTCCCTCCCTTCC 61.310 68.421 0.00 0.00 0.00 3.46
426 427 1.229853 TCCCACCTTCCCTCCCTTC 60.230 63.158 0.00 0.00 0.00 3.46
427 428 1.229984 CTCCCACCTTCCCTCCCTT 60.230 63.158 0.00 0.00 0.00 3.95
428 429 2.456840 CTCCCACCTTCCCTCCCT 59.543 66.667 0.00 0.00 0.00 4.20
429 430 3.412408 GCTCCCACCTTCCCTCCC 61.412 72.222 0.00 0.00 0.00 4.30
430 431 2.610859 TGCTCCCACCTTCCCTCC 60.611 66.667 0.00 0.00 0.00 4.30
431 432 2.674220 CCTGCTCCCACCTTCCCTC 61.674 68.421 0.00 0.00 0.00 4.30
432 433 2.612115 CCTGCTCCCACCTTCCCT 60.612 66.667 0.00 0.00 0.00 4.20
433 434 4.432741 GCCTGCTCCCACCTTCCC 62.433 72.222 0.00 0.00 0.00 3.97
434 435 4.785453 CGCCTGCTCCCACCTTCC 62.785 72.222 0.00 0.00 0.00 3.46
435 436 4.785453 CCGCCTGCTCCCACCTTC 62.785 72.222 0.00 0.00 0.00 3.46
481 482 2.819595 CAGCGTTGTCCCATCGGG 60.820 66.667 0.00 0.00 46.11 5.14
482 483 2.819595 CCAGCGTTGTCCCATCGG 60.820 66.667 0.00 0.00 0.00 4.18
483 484 2.233605 TACCCAGCGTTGTCCCATCG 62.234 60.000 0.00 0.00 0.00 3.84
484 485 0.462047 CTACCCAGCGTTGTCCCATC 60.462 60.000 0.00 0.00 0.00 3.51
485 486 1.602237 CTACCCAGCGTTGTCCCAT 59.398 57.895 0.00 0.00 0.00 4.00
486 487 2.589157 CCTACCCAGCGTTGTCCCA 61.589 63.158 0.00 0.00 0.00 4.37
487 488 2.267961 CCTACCCAGCGTTGTCCC 59.732 66.667 0.00 0.00 0.00 4.46
488 489 1.833787 TTCCCTACCCAGCGTTGTCC 61.834 60.000 0.00 0.00 0.00 4.02
489 490 0.035739 TTTCCCTACCCAGCGTTGTC 59.964 55.000 0.00 0.00 0.00 3.18
490 491 0.475044 TTTTCCCTACCCAGCGTTGT 59.525 50.000 0.00 0.00 0.00 3.32
491 492 1.268625 GTTTTTCCCTACCCAGCGTTG 59.731 52.381 0.00 0.00 0.00 4.10
492 493 1.612676 GTTTTTCCCTACCCAGCGTT 58.387 50.000 0.00 0.00 0.00 4.84
493 494 0.251033 GGTTTTTCCCTACCCAGCGT 60.251 55.000 0.00 0.00 0.00 5.07
494 495 0.037734 AGGTTTTTCCCTACCCAGCG 59.962 55.000 0.00 0.00 34.90 5.18
495 496 3.087031 GTTAGGTTTTTCCCTACCCAGC 58.913 50.000 0.00 0.00 36.81 4.85
496 497 4.652679 AGTTAGGTTTTTCCCTACCCAG 57.347 45.455 0.00 0.00 36.81 4.45
497 498 4.202599 GGAAGTTAGGTTTTTCCCTACCCA 60.203 45.833 0.00 0.00 36.81 4.51
498 499 4.043812 AGGAAGTTAGGTTTTTCCCTACCC 59.956 45.833 0.00 0.00 41.00 3.69
499 500 5.251764 GAGGAAGTTAGGTTTTTCCCTACC 58.748 45.833 0.00 0.00 41.00 3.18
500 501 5.221986 TGGAGGAAGTTAGGTTTTTCCCTAC 60.222 44.000 0.00 0.00 41.00 3.18
501 502 4.915194 TGGAGGAAGTTAGGTTTTTCCCTA 59.085 41.667 0.00 0.00 41.00 3.53
502 503 3.725267 TGGAGGAAGTTAGGTTTTTCCCT 59.275 43.478 0.00 0.00 41.00 4.20
503 504 4.108501 TGGAGGAAGTTAGGTTTTTCCC 57.891 45.455 0.00 0.00 41.00 3.97
504 505 4.705507 GGATGGAGGAAGTTAGGTTTTTCC 59.294 45.833 0.00 0.00 40.52 3.13
505 506 5.571285 AGGATGGAGGAAGTTAGGTTTTTC 58.429 41.667 0.00 0.00 0.00 2.29
506 507 5.600669 AGGATGGAGGAAGTTAGGTTTTT 57.399 39.130 0.00 0.00 0.00 1.94
507 508 6.910259 ATAGGATGGAGGAAGTTAGGTTTT 57.090 37.500 0.00 0.00 0.00 2.43
508 509 6.910259 AATAGGATGGAGGAAGTTAGGTTT 57.090 37.500 0.00 0.00 0.00 3.27
509 510 7.628101 ACTTAATAGGATGGAGGAAGTTAGGTT 59.372 37.037 0.00 0.00 0.00 3.50
510 511 7.140304 ACTTAATAGGATGGAGGAAGTTAGGT 58.860 38.462 0.00 0.00 0.00 3.08
511 512 7.524038 CGACTTAATAGGATGGAGGAAGTTAGG 60.524 44.444 0.00 0.00 0.00 2.69
512 513 7.371936 CGACTTAATAGGATGGAGGAAGTTAG 58.628 42.308 0.00 0.00 0.00 2.34
513 514 6.267014 CCGACTTAATAGGATGGAGGAAGTTA 59.733 42.308 0.00 0.00 0.00 2.24
514 515 5.070580 CCGACTTAATAGGATGGAGGAAGTT 59.929 44.000 0.00 0.00 0.00 2.66
515 516 4.589374 CCGACTTAATAGGATGGAGGAAGT 59.411 45.833 0.00 0.00 0.00 3.01
516 517 4.561734 GCCGACTTAATAGGATGGAGGAAG 60.562 50.000 0.00 0.00 0.00 3.46
517 518 3.323979 GCCGACTTAATAGGATGGAGGAA 59.676 47.826 0.00 0.00 0.00 3.36
518 519 2.897969 GCCGACTTAATAGGATGGAGGA 59.102 50.000 0.00 0.00 0.00 3.71
519 520 2.900546 AGCCGACTTAATAGGATGGAGG 59.099 50.000 0.00 0.00 0.00 4.30
520 521 5.723672 TTAGCCGACTTAATAGGATGGAG 57.276 43.478 0.00 0.00 0.00 3.86
521 522 6.488769 TTTTAGCCGACTTAATAGGATGGA 57.511 37.500 0.00 0.00 0.00 3.41
547 548 3.746045 TGCTTCGAGAACTAAACCAGT 57.254 42.857 0.00 0.00 40.05 4.00
548 549 4.499183 AGATGCTTCGAGAACTAAACCAG 58.501 43.478 0.00 0.00 0.00 4.00
549 550 4.537135 AGATGCTTCGAGAACTAAACCA 57.463 40.909 0.00 0.00 0.00 3.67
550 551 4.330347 GGAAGATGCTTCGAGAACTAAACC 59.670 45.833 0.00 0.00 0.00 3.27
551 552 5.172205 AGGAAGATGCTTCGAGAACTAAAC 58.828 41.667 0.00 0.00 0.00 2.01
552 553 5.407407 AGGAAGATGCTTCGAGAACTAAA 57.593 39.130 0.00 0.00 0.00 1.85
553 554 6.525578 TTAGGAAGATGCTTCGAGAACTAA 57.474 37.500 0.00 0.00 0.00 2.24
558 559 2.760650 TGCTTAGGAAGATGCTTCGAGA 59.239 45.455 0.00 0.00 0.00 4.04
576 577 7.886629 AACCATGAATATGATGTAAAGTGCT 57.113 32.000 0.00 0.00 36.36 4.40
647 648 1.834996 GATGATGCAGAGGCTGGGA 59.165 57.895 0.00 0.00 41.91 4.37
666 667 0.249238 TTCATTTGTTGTGTGCGGGC 60.249 50.000 0.00 0.00 0.00 6.13
668 669 1.522258 GCTTTCATTTGTTGTGTGCGG 59.478 47.619 0.00 0.00 0.00 5.69
671 672 5.527511 TTGTTGCTTTCATTTGTTGTGTG 57.472 34.783 0.00 0.00 0.00 3.82
683 684 8.427774 GCACAAGTTAATCTAATTGTTGCTTTC 58.572 33.333 0.00 0.00 33.76 2.62
687 688 7.218963 GCTAGCACAAGTTAATCTAATTGTTGC 59.781 37.037 10.63 0.00 33.76 4.17
688 689 8.236586 TGCTAGCACAAGTTAATCTAATTGTTG 58.763 33.333 14.93 0.00 33.76 3.33
713 715 6.628919 TCTGCCATGTCTCATCATTTATTG 57.371 37.500 0.00 0.00 0.00 1.90
720 722 6.040054 CCAAATTATTCTGCCATGTCTCATCA 59.960 38.462 0.00 0.00 0.00 3.07
754 756 0.106419 TCCTGCCCGGAAAACAGTTT 60.106 50.000 0.73 0.00 39.40 2.66
757 759 1.675641 CCTCCTGCCCGGAAAACAG 60.676 63.158 0.73 4.79 42.53 3.16
788 790 3.015327 ACTCCACAGATACGTGTCCTAC 58.985 50.000 8.86 0.00 34.98 3.18
811 813 2.094757 TTTCCGCAAGAGGAGACGCA 62.095 55.000 0.00 0.00 41.98 5.24
842 844 1.111277 GTGAGTGGTTGGGCAGTTTT 58.889 50.000 0.00 0.00 0.00 2.43
884 886 0.040157 GTGTGCGCCGTCCGTATATA 60.040 55.000 4.18 0.00 39.71 0.86
902 904 2.421739 GTGCACAGGTGTCTCGGT 59.578 61.111 13.17 0.00 0.00 4.69
996 1005 0.462581 GCGGTCTTGCATCCATCTCA 60.463 55.000 0.00 0.00 34.15 3.27
1084 1108 5.850028 AGAGCCAGCCCTATTTATTACCTAA 59.150 40.000 0.00 0.00 0.00 2.69
1093 1117 1.135960 GAGGAGAGCCAGCCCTATTT 58.864 55.000 0.00 0.00 36.29 1.40
1098 1122 3.478274 CCAGAGGAGAGCCAGCCC 61.478 72.222 0.00 0.00 36.29 5.19
1109 1133 1.482593 ACTAGAAATGGACGCCAGAGG 59.517 52.381 0.00 0.00 36.75 3.69
1115 1139 1.480219 CCGCGACTAGAAATGGACGC 61.480 60.000 8.23 0.00 42.07 5.19
1116 1140 1.480219 GCCGCGACTAGAAATGGACG 61.480 60.000 8.23 0.00 0.00 4.79
1145 1174 3.551863 GGAAGGACGACAGATATCAGCAG 60.552 52.174 5.32 0.00 0.00 4.24
1431 1469 2.530460 TATGCAAGGAGGGCAATTGT 57.470 45.000 7.40 0.00 45.60 2.71
1460 1498 0.751643 CGAATCCAAGGGCCCGAAAT 60.752 55.000 18.44 6.13 0.00 2.17
1487 1525 1.888436 TAGCACTCAAGGTGGAGGCG 61.888 60.000 0.00 0.00 45.44 5.52
1505 1543 1.837439 AGGACGCCATTGATGAAGGTA 59.163 47.619 0.00 0.00 0.00 3.08
1554 1592 6.603201 ACAAAAGAATTCTCTGTCAAAGGTCA 59.397 34.615 8.78 0.00 30.03 4.02
1558 1596 6.017934 TCCGACAAAAGAATTCTCTGTCAAAG 60.018 38.462 30.72 23.54 30.03 2.77
1559 1597 5.820423 TCCGACAAAAGAATTCTCTGTCAAA 59.180 36.000 30.72 22.05 30.03 2.69
1560 1598 5.364778 TCCGACAAAAGAATTCTCTGTCAA 58.635 37.500 30.72 22.27 30.03 3.18
1561 1599 4.956085 TCCGACAAAAGAATTCTCTGTCA 58.044 39.130 30.72 19.61 30.03 3.58
1562 1600 4.991687 ACTCCGACAAAAGAATTCTCTGTC 59.008 41.667 26.36 26.36 30.03 3.51
1563 1601 4.962155 ACTCCGACAAAAGAATTCTCTGT 58.038 39.130 18.38 18.38 30.03 3.41
1564 1602 5.931441 AACTCCGACAAAAGAATTCTCTG 57.069 39.130 8.78 11.66 30.03 3.35
1576 1614 3.869065 ACACAGAAGAAAACTCCGACAA 58.131 40.909 0.00 0.00 0.00 3.18
1610 1658 3.074412 CACAAGCTAACAGTAACCAGGG 58.926 50.000 0.00 0.00 0.00 4.45
1679 1728 2.022129 CCGCAGAAAGAAGACGCGT 61.022 57.895 13.85 13.85 44.23 6.01
1680 1729 2.730672 CCCGCAGAAAGAAGACGCG 61.731 63.158 3.53 3.53 45.25 6.01
1681 1730 1.228657 AACCCGCAGAAAGAAGACGC 61.229 55.000 0.00 0.00 0.00 5.19
1682 1731 1.069906 CAAACCCGCAGAAAGAAGACG 60.070 52.381 0.00 0.00 0.00 4.18
1683 1732 2.218603 TCAAACCCGCAGAAAGAAGAC 58.781 47.619 0.00 0.00 0.00 3.01
1684 1733 2.494059 CTCAAACCCGCAGAAAGAAGA 58.506 47.619 0.00 0.00 0.00 2.87
1685 1734 1.068954 GCTCAAACCCGCAGAAAGAAG 60.069 52.381 0.00 0.00 0.00 2.85
1688 1744 1.808411 TAGCTCAAACCCGCAGAAAG 58.192 50.000 0.00 0.00 0.00 2.62
1690 1746 2.489938 ATTAGCTCAAACCCGCAGAA 57.510 45.000 0.00 0.00 0.00 3.02
1707 1763 5.256474 AGCCTAACACAGCACTGAATAATT 58.744 37.500 4.31 0.00 0.00 1.40
1739 1800 4.370917 CACACAGCAAAACTTTATGCCTT 58.629 39.130 0.00 0.00 43.57 4.35
1742 1803 3.976169 TCCACACAGCAAAACTTTATGC 58.024 40.909 0.00 0.00 42.87 3.14
1745 1806 3.440872 ACGTTCCACACAGCAAAACTTTA 59.559 39.130 0.00 0.00 0.00 1.85
1755 1816 1.263217 GGTGCTAAACGTTCCACACAG 59.737 52.381 21.56 7.41 0.00 3.66
1757 1818 1.589803 AGGTGCTAAACGTTCCACAC 58.410 50.000 20.80 18.22 0.00 3.82
1838 1901 1.065199 ACCCGGGATCGCGTATCTATA 60.065 52.381 32.02 0.00 34.75 1.31
1867 1930 8.528917 ACATTTCATGATTTTGACACTCATTG 57.471 30.769 0.00 0.00 0.00 2.82
1970 2050 2.223971 GCTAGTCATGCCCGCTTACTTA 60.224 50.000 0.00 0.00 0.00 2.24
1971 2051 1.473434 GCTAGTCATGCCCGCTTACTT 60.473 52.381 0.00 0.00 0.00 2.24
1973 2053 0.105039 AGCTAGTCATGCCCGCTTAC 59.895 55.000 0.00 0.00 0.00 2.34
1978 2058 2.231529 AGTACTAGCTAGTCATGCCCG 58.768 52.381 29.28 0.00 37.73 6.13
1979 2059 4.400120 AGTAGTACTAGCTAGTCATGCCC 58.600 47.826 29.28 13.48 37.73 5.36
1981 2061 6.707161 ACAGTAGTAGTACTAGCTAGTCATGC 59.293 42.308 29.28 20.68 37.40 4.06
1982 2062 9.195411 GTACAGTAGTAGTACTAGCTAGTCATG 57.805 40.741 29.28 17.59 37.40 3.07
2000 2085 9.242477 CATCATAGTGATCACAAAGTACAGTAG 57.758 37.037 27.02 4.34 34.28 2.57
2010 2098 5.002516 TGTGCAACATCATAGTGATCACAA 58.997 37.500 27.02 10.25 45.67 3.33
2045 2133 8.055986 CGGTTTCTTTGATTTGAAAACTAAAGC 58.944 33.333 0.00 0.00 37.63 3.51
2103 2191 0.465460 AACTTGCTTGCACTTCGGGA 60.465 50.000 0.00 0.00 0.00 5.14
2107 2195 3.642705 CCCTTTAACTTGCTTGCACTTC 58.357 45.455 0.00 0.00 0.00 3.01
2154 2251 4.522689 ATGGACATGCGCGCCGTA 62.523 61.111 30.77 11.06 0.00 4.02
2211 2308 0.100682 GAGAGTCATACGCGCCTGAA 59.899 55.000 5.73 0.00 0.00 3.02
2229 2326 4.638304 GTGTGCTTTACTACCTTCCTTGA 58.362 43.478 0.00 0.00 0.00 3.02
2259 2357 5.468072 CACAAGTTGAAGCAGATGAAGTACT 59.532 40.000 10.54 0.00 0.00 2.73
2260 2358 5.683859 CACAAGTTGAAGCAGATGAAGTAC 58.316 41.667 10.54 0.00 0.00 2.73
2261 2359 4.214119 GCACAAGTTGAAGCAGATGAAGTA 59.786 41.667 10.54 0.00 0.00 2.24
2274 2372 2.746904 CGGATTACCATGCACAAGTTGA 59.253 45.455 10.54 0.00 35.59 3.18
2282 2380 4.314961 CATTAGTAGCGGATTACCATGCA 58.685 43.478 0.00 0.00 35.59 3.96
2314 2419 1.212751 GGGAACGAACCTGCAATGC 59.787 57.895 0.00 0.00 0.00 3.56
2335 2440 1.716172 GAATGCCGCCTCGAACTTC 59.284 57.895 0.00 0.00 0.00 3.01
2350 2455 2.981560 CTTGGCGTGCTTGGCGAAT 61.982 57.895 0.00 0.00 37.19 3.34
2422 2527 4.435970 TAGTCGCTGGGCTCCCGA 62.436 66.667 0.00 0.00 39.42 5.14
2454 2559 1.134367 CAGGAAAGGTCGTAGATCGCA 59.866 52.381 0.00 0.00 46.28 5.10
2465 2570 7.066766 CGTACAGTAGATACTAACAGGAAAGGT 59.933 40.741 0.00 0.00 34.13 3.50
2469 2574 9.618890 ATTACGTACAGTAGATACTAACAGGAA 57.381 33.333 0.00 0.00 36.56 3.36
2478 2583 8.281893 GGTCTGAGAATTACGTACAGTAGATAC 58.718 40.741 9.24 1.90 36.56 2.24
2479 2584 7.443575 GGGTCTGAGAATTACGTACAGTAGATA 59.556 40.741 9.24 0.00 36.56 1.98
2480 2585 6.262720 GGGTCTGAGAATTACGTACAGTAGAT 59.737 42.308 9.24 0.00 36.56 1.98
2482 2587 5.356190 TGGGTCTGAGAATTACGTACAGTAG 59.644 44.000 9.24 0.00 36.56 2.57
2484 2589 4.084287 TGGGTCTGAGAATTACGTACAGT 58.916 43.478 9.24 0.00 0.00 3.55
2488 2597 4.098960 GGTGATGGGTCTGAGAATTACGTA 59.901 45.833 0.00 0.00 0.00 3.57
2497 2606 2.184020 TTGCCGGTGATGGGTCTGAG 62.184 60.000 1.90 0.00 0.00 3.35
2505 2614 0.724453 CGTTTCGTTTGCCGGTGATG 60.724 55.000 1.90 0.00 37.11 3.07
2506 2615 0.881159 TCGTTTCGTTTGCCGGTGAT 60.881 50.000 1.90 0.00 37.11 3.06
2507 2616 1.521010 TCGTTTCGTTTGCCGGTGA 60.521 52.632 1.90 0.00 37.11 4.02
2508 2617 1.368374 GTCGTTTCGTTTGCCGGTG 60.368 57.895 1.90 0.00 37.11 4.94
2509 2618 2.873604 CGTCGTTTCGTTTGCCGGT 61.874 57.895 1.90 0.00 37.11 5.28
2510 2619 1.893168 ATCGTCGTTTCGTTTGCCGG 61.893 55.000 0.00 0.00 37.11 6.13
2524 2635 1.221414 GCCCTGCTTACATCATCGTC 58.779 55.000 0.00 0.00 0.00 4.20
2527 2638 0.886490 CCCGCCCTGCTTACATCATC 60.886 60.000 0.00 0.00 0.00 2.92
2528 2639 1.149174 CCCGCCCTGCTTACATCAT 59.851 57.895 0.00 0.00 0.00 2.45
2529 2640 2.589540 CCCGCCCTGCTTACATCA 59.410 61.111 0.00 0.00 0.00 3.07
2530 2641 2.902343 GCCCGCCCTGCTTACATC 60.902 66.667 0.00 0.00 0.00 3.06
2531 2642 4.856801 CGCCCGCCCTGCTTACAT 62.857 66.667 0.00 0.00 0.00 2.29
2671 2782 3.648545 GCCTGGGTTTCTCCTATAGATGT 59.351 47.826 0.00 0.00 33.05 3.06
2676 2787 3.664320 TCATGCCTGGGTTTCTCCTATA 58.336 45.455 0.00 0.00 36.25 1.31
2677 2788 2.492025 TCATGCCTGGGTTTCTCCTAT 58.508 47.619 0.00 0.00 36.25 2.57
2681 2795 1.303309 CGATCATGCCTGGGTTTCTC 58.697 55.000 0.00 0.00 0.00 2.87
2791 2915 3.712733 ACCGGATAAGTAATGCCCTGTAA 59.287 43.478 9.46 0.00 0.00 2.41
2914 3309 0.107410 TTCACAAGCGTTCACACCCT 60.107 50.000 0.00 0.00 0.00 4.34
2962 3369 4.082787 CCATATCCACAGGACACAAACAAC 60.083 45.833 0.00 0.00 32.98 3.32
2989 3398 4.888038 AGTCAGTCGTGTACGCATAATA 57.112 40.909 7.29 0.00 39.60 0.98
3025 3434 2.887783 AGCAGTACTCCATCCATACGAG 59.112 50.000 0.00 0.00 0.00 4.18
3027 3436 3.290308 GAGCAGTACTCCATCCATACG 57.710 52.381 0.00 0.00 39.75 3.06
3079 3494 8.671921 GGGATGTTTATGATAATATGCTCACTG 58.328 37.037 0.00 0.00 0.00 3.66
3080 3495 8.609483 AGGGATGTTTATGATAATATGCTCACT 58.391 33.333 0.00 0.00 0.00 3.41
3081 3496 8.798859 AGGGATGTTTATGATAATATGCTCAC 57.201 34.615 0.00 0.00 0.00 3.51
3082 3497 8.605065 TGAGGGATGTTTATGATAATATGCTCA 58.395 33.333 0.00 0.00 0.00 4.26
3083 3498 8.887717 GTGAGGGATGTTTATGATAATATGCTC 58.112 37.037 0.00 0.00 0.00 4.26
3084 3499 7.550551 CGTGAGGGATGTTTATGATAATATGCT 59.449 37.037 0.00 0.00 0.00 3.79
3085 3500 7.549134 TCGTGAGGGATGTTTATGATAATATGC 59.451 37.037 0.00 0.00 0.00 3.14
3086 3501 9.605275 ATCGTGAGGGATGTTTATGATAATATG 57.395 33.333 0.00 0.00 0.00 1.78
3089 3504 7.766278 GCTATCGTGAGGGATGTTTATGATAAT 59.234 37.037 0.00 0.00 0.00 1.28
3090 3505 7.097192 GCTATCGTGAGGGATGTTTATGATAA 58.903 38.462 0.00 0.00 0.00 1.75
3091 3506 6.625081 CGCTATCGTGAGGGATGTTTATGATA 60.625 42.308 0.00 0.00 0.00 2.15
3092 3507 5.482908 GCTATCGTGAGGGATGTTTATGAT 58.517 41.667 0.00 0.00 0.00 2.45
3093 3508 4.558697 CGCTATCGTGAGGGATGTTTATGA 60.559 45.833 0.00 0.00 0.00 2.15
3094 3509 3.675225 CGCTATCGTGAGGGATGTTTATG 59.325 47.826 0.00 0.00 0.00 1.90
3095 3510 3.572682 TCGCTATCGTGAGGGATGTTTAT 59.427 43.478 2.78 0.00 33.79 1.40
3096 3511 2.953648 TCGCTATCGTGAGGGATGTTTA 59.046 45.455 2.78 0.00 33.79 2.01
3097 3512 1.754803 TCGCTATCGTGAGGGATGTTT 59.245 47.619 2.78 0.00 33.79 2.83
3098 3513 1.399714 TCGCTATCGTGAGGGATGTT 58.600 50.000 2.78 0.00 33.79 2.71
3099 3514 1.067212 GTTCGCTATCGTGAGGGATGT 59.933 52.381 6.85 0.00 38.12 3.06
3100 3515 1.338337 AGTTCGCTATCGTGAGGGATG 59.662 52.381 6.85 0.00 38.12 3.51
3101 3516 1.693627 AGTTCGCTATCGTGAGGGAT 58.306 50.000 6.85 0.00 38.12 3.85
3102 3517 1.134367 CAAGTTCGCTATCGTGAGGGA 59.866 52.381 2.78 2.78 36.68 4.20
3103 3518 1.134367 TCAAGTTCGCTATCGTGAGGG 59.866 52.381 0.00 0.00 36.96 4.30
3104 3519 2.561733 TCAAGTTCGCTATCGTGAGG 57.438 50.000 0.00 0.00 36.96 3.86
3105 3520 3.759418 TCTTCAAGTTCGCTATCGTGAG 58.241 45.455 0.00 0.00 36.96 3.51
3106 3521 3.842732 TCTTCAAGTTCGCTATCGTGA 57.157 42.857 0.00 0.00 36.96 4.35
3107 3522 4.166523 TCTTCTTCAAGTTCGCTATCGTG 58.833 43.478 0.00 0.00 36.96 4.35
3108 3523 4.436242 TCTTCTTCAAGTTCGCTATCGT 57.564 40.909 0.00 0.00 36.96 3.73
3109 3524 4.259610 GCTTCTTCTTCAAGTTCGCTATCG 60.260 45.833 0.00 0.00 0.00 2.92
3110 3525 4.867608 AGCTTCTTCTTCAAGTTCGCTATC 59.132 41.667 0.00 0.00 30.88 2.08
3111 3526 4.629200 CAGCTTCTTCTTCAAGTTCGCTAT 59.371 41.667 0.00 0.00 31.21 2.97
3112 3527 3.990469 CAGCTTCTTCTTCAAGTTCGCTA 59.010 43.478 0.00 0.00 31.21 4.26
3113 3528 2.805099 CAGCTTCTTCTTCAAGTTCGCT 59.195 45.455 0.00 0.00 31.95 4.93
3114 3529 2.545946 ACAGCTTCTTCTTCAAGTTCGC 59.454 45.455 0.00 0.00 0.00 4.70
3115 3530 4.802876 AACAGCTTCTTCTTCAAGTTCG 57.197 40.909 0.00 0.00 0.00 3.95
3116 3531 5.006746 TCGAAACAGCTTCTTCTTCAAGTTC 59.993 40.000 3.66 0.00 31.20 3.01
3117 3532 4.876107 TCGAAACAGCTTCTTCTTCAAGTT 59.124 37.500 3.66 0.00 31.20 2.66
3118 3533 4.271291 GTCGAAACAGCTTCTTCTTCAAGT 59.729 41.667 0.00 0.00 31.20 3.16
3119 3534 4.271049 TGTCGAAACAGCTTCTTCTTCAAG 59.729 41.667 0.00 0.00 31.20 3.02
3120 3535 4.188462 TGTCGAAACAGCTTCTTCTTCAA 58.812 39.130 0.00 0.00 31.20 2.69
3121 3536 3.792401 TGTCGAAACAGCTTCTTCTTCA 58.208 40.909 0.00 0.85 31.20 3.02
3122 3537 4.952097 GATGTCGAAACAGCTTCTTCTTC 58.048 43.478 0.00 0.00 38.76 2.87
3123 3538 4.999751 GATGTCGAAACAGCTTCTTCTT 57.000 40.909 0.00 0.00 38.76 2.52
3131 3546 5.234543 GGGATAAAGTAGATGTCGAAACAGC 59.765 44.000 0.00 0.00 42.19 4.40
3132 3547 6.338146 TGGGATAAAGTAGATGTCGAAACAG 58.662 40.000 0.00 0.00 39.20 3.16
3133 3548 6.288941 TGGGATAAAGTAGATGTCGAAACA 57.711 37.500 0.00 0.00 40.38 2.83
3134 3549 6.817140 ACTTGGGATAAAGTAGATGTCGAAAC 59.183 38.462 0.00 0.00 38.62 2.78
3135 3550 6.816640 CACTTGGGATAAAGTAGATGTCGAAA 59.183 38.462 0.00 0.00 38.34 3.46
3136 3551 6.338146 CACTTGGGATAAAGTAGATGTCGAA 58.662 40.000 0.00 0.00 38.34 3.71
3137 3552 5.681437 GCACTTGGGATAAAGTAGATGTCGA 60.681 44.000 0.00 0.00 38.34 4.20
3138 3553 4.508124 GCACTTGGGATAAAGTAGATGTCG 59.492 45.833 0.00 0.00 38.34 4.35
3139 3554 5.428253 TGCACTTGGGATAAAGTAGATGTC 58.572 41.667 0.00 0.00 38.34 3.06
3140 3555 5.435686 TGCACTTGGGATAAAGTAGATGT 57.564 39.130 0.00 0.00 38.34 3.06
3141 3556 6.949352 ATTGCACTTGGGATAAAGTAGATG 57.051 37.500 0.00 0.00 38.34 2.90
3142 3557 9.071276 CATTATTGCACTTGGGATAAAGTAGAT 57.929 33.333 0.00 0.00 38.34 1.98
3143 3558 8.450578 CATTATTGCACTTGGGATAAAGTAGA 57.549 34.615 0.00 0.00 38.34 2.59
3236 3660 0.102481 TCATCCTTCCTAGCGAACGC 59.898 55.000 11.31 11.31 42.33 4.84
3237 3661 1.134367 TGTCATCCTTCCTAGCGAACG 59.866 52.381 0.00 0.00 0.00 3.95
3242 3666 2.284190 GCACTTGTCATCCTTCCTAGC 58.716 52.381 0.00 0.00 0.00 3.42
3243 3667 2.166459 TCGCACTTGTCATCCTTCCTAG 59.834 50.000 0.00 0.00 0.00 3.02
3244 3668 2.176045 TCGCACTTGTCATCCTTCCTA 58.824 47.619 0.00 0.00 0.00 2.94
3245 3669 0.976641 TCGCACTTGTCATCCTTCCT 59.023 50.000 0.00 0.00 0.00 3.36
3259 3683 2.095567 AGTTGCATCAAGATGTTCGCAC 60.096 45.455 11.35 2.68 40.80 5.34
3299 3723 4.725790 AGCTAAAATTGTCATCCTTGCC 57.274 40.909 0.00 0.00 0.00 4.52
3323 3747 7.873719 TTTTCCGAGGAAATTATCATGCTTA 57.126 32.000 16.97 0.00 42.71 3.09
3370 3797 2.222530 GCAGTTTTAGTTAGCGAGCGTC 60.223 50.000 0.00 0.00 0.00 5.19
3372 3799 1.060698 GGCAGTTTTAGTTAGCGAGCG 59.939 52.381 0.00 0.00 0.00 5.03
3388 3815 0.110644 GCGAACGACTTTCAAGGCAG 60.111 55.000 0.00 0.00 31.90 4.85
3441 3883 5.661458 ACGTGAAACTGGAGTAGGATATTG 58.339 41.667 0.00 0.00 31.75 1.90
3444 3886 4.597004 AGACGTGAAACTGGAGTAGGATA 58.403 43.478 0.00 0.00 31.75 2.59
3456 3898 3.060205 GCAAGACAAGAGAGACGTGAAAC 60.060 47.826 0.00 0.00 0.00 2.78
3503 3949 3.959535 AAACGGGATTGATTGCAACAT 57.040 38.095 0.00 0.00 36.72 2.71
3575 4024 1.402968 CAAAGGATGCACGGGAAGATG 59.597 52.381 0.00 0.00 0.00 2.90
3602 4051 1.206831 GCGCAACGGAACCTTTCTC 59.793 57.895 0.30 0.00 0.00 2.87
3604 4053 1.082104 CAGCGCAACGGAACCTTTC 60.082 57.895 11.47 0.00 0.00 2.62
3616 4065 1.271102 GGGGAACAAATAAACAGCGCA 59.729 47.619 11.47 0.00 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.