Multiple sequence alignment - TraesCS6B01G326200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G326200 chr6B 100.000 2599 0 0 1 2599 575637321 575639919 0.000000e+00 4800
1 TraesCS6B01G326200 chr6A 91.537 1477 61 22 655 2087 530045460 530046916 0.000000e+00 1977
2 TraesCS6B01G326200 chr6A 88.000 525 23 11 2109 2599 530047008 530047526 3.730000e-163 584
3 TraesCS6B01G326200 chr6A 86.875 480 36 17 1 468 530045001 530045465 1.780000e-141 512
4 TraesCS6B01G326200 chr6D 91.343 1467 64 26 655 2075 385559650 385561099 0.000000e+00 1947
5 TraesCS6B01G326200 chr6D 89.315 496 26 14 2109 2582 385561180 385561670 4.790000e-167 597
6 TraesCS6B01G326200 chr6D 89.474 437 30 9 34 468 385559233 385559655 2.940000e-149 538
7 TraesCS6B01G326200 chr7D 83.558 371 35 13 1015 1375 164534946 164534592 8.970000e-85 324
8 TraesCS6B01G326200 chr7D 93.048 187 13 0 469 655 32904117 32903931 9.160000e-70 274
9 TraesCS6B01G326200 chr7A 83.288 371 36 12 1015 1375 165936823 165937177 4.170000e-83 318
10 TraesCS6B01G326200 chr2B 96.296 189 7 0 469 657 795056465 795056277 6.980000e-81 311
11 TraesCS6B01G326200 chr7B 81.720 372 44 9 1013 1375 126833771 126833415 3.270000e-74 289
12 TraesCS6B01G326200 chr5B 93.684 190 9 2 468 657 428126788 428126974 5.480000e-72 281
13 TraesCS6B01G326200 chrUn 93.122 189 13 0 469 657 50072215 50072403 7.080000e-71 278
14 TraesCS6B01G326200 chr3A 93.122 189 13 0 469 657 739754572 739754384 7.080000e-71 278
15 TraesCS6B01G326200 chr1B 93.122 189 13 0 469 657 53647501 53647689 7.080000e-71 278
16 TraesCS6B01G326200 chr1B 92.670 191 14 0 467 657 191011842 191011652 2.550000e-70 276
17 TraesCS6B01G326200 chr4B 92.746 193 9 5 469 657 64113680 64113489 9.160000e-70 274
18 TraesCS6B01G326200 chr1D 91.837 196 15 1 461 655 64209764 64209959 3.300000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G326200 chr6B 575637321 575639919 2598 False 4800.000000 4800 100.000 1 2599 1 chr6B.!!$F1 2598
1 TraesCS6B01G326200 chr6A 530045001 530047526 2525 False 1024.333333 1977 88.804 1 2599 3 chr6A.!!$F1 2598
2 TraesCS6B01G326200 chr6D 385559233 385561670 2437 False 1027.333333 1947 90.044 34 2582 3 chr6D.!!$F1 2548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 663 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2122 0.861837 GATTGATCGATCGTGCCACC 59.138 55.0 20.03 2.12 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 4.094830 ACGGTTATGTGTTTTTCCTCCT 57.905 40.909 0.00 0.00 0.00 3.69
34 36 6.940867 GGTTATGTGTTTTTCCTCCTAGAAGT 59.059 38.462 0.00 0.00 0.00 3.01
78 80 3.931907 AACCATAGCTCCACATTGCTA 57.068 42.857 0.00 0.00 44.47 3.49
84 86 2.283298 AGCTCCACATTGCTATGAACG 58.717 47.619 15.23 3.05 37.81 3.95
85 87 1.268234 GCTCCACATTGCTATGAACGC 60.268 52.381 15.23 7.69 35.65 4.84
86 88 2.009051 CTCCACATTGCTATGAACGCA 58.991 47.619 15.23 0.00 35.65 5.24
184 196 6.479660 CCAAAGTTGAAAATAGTGCACACAAT 59.520 34.615 21.04 6.57 0.00 2.71
185 197 7.011295 CCAAAGTTGAAAATAGTGCACACAATT 59.989 33.333 21.04 12.48 0.00 2.32
209 221 7.575414 TTTTTCCTATGTTGCAAGTAGACAA 57.425 32.000 16.56 8.68 0.00 3.18
210 222 6.801539 TTTCCTATGTTGCAAGTAGACAAG 57.198 37.500 16.56 5.84 0.00 3.16
233 245 5.360714 AGCATCTTGTCTTTCCTTTCACAAA 59.639 36.000 0.00 0.00 0.00 2.83
317 330 5.362143 ACTGCAATATGACTAGAGAGCAAGA 59.638 40.000 0.00 0.00 0.00 3.02
318 331 6.127225 ACTGCAATATGACTAGAGAGCAAGAA 60.127 38.462 0.00 0.00 0.00 2.52
367 380 4.986659 CAGCTCAAATTTCCTTCAGTTTGG 59.013 41.667 0.00 0.00 33.55 3.28
379 393 2.593026 TCAGTTTGGAAACATCACCCC 58.407 47.619 5.11 0.00 42.32 4.95
380 394 1.618343 CAGTTTGGAAACATCACCCCC 59.382 52.381 5.11 0.00 42.32 5.40
381 395 1.219213 AGTTTGGAAACATCACCCCCA 59.781 47.619 5.11 0.00 42.32 4.96
382 396 1.343142 GTTTGGAAACATCACCCCCAC 59.657 52.381 0.00 0.00 42.32 4.61
383 397 0.856982 TTGGAAACATCACCCCCACT 59.143 50.000 0.00 0.00 42.32 4.00
409 423 1.490910 AGTACCTAATTCCAGGCAGCC 59.509 52.381 1.84 1.84 39.53 4.85
461 479 3.289834 CCTTGTGCGCCTGTGCTT 61.290 61.111 4.18 0.00 35.36 3.91
468 486 3.197790 CGCCTGTGCTTGGATCCG 61.198 66.667 7.39 0.00 34.43 4.18
469 487 2.825836 GCCTGTGCTTGGATCCGG 60.826 66.667 7.39 0.00 33.53 5.14
470 488 2.989639 CCTGTGCTTGGATCCGGA 59.010 61.111 6.61 6.61 0.00 5.14
472 490 1.811266 CTGTGCTTGGATCCGGACG 60.811 63.158 6.12 0.00 0.00 4.79
473 491 2.225791 CTGTGCTTGGATCCGGACGA 62.226 60.000 6.12 0.00 0.00 4.20
474 492 1.519455 GTGCTTGGATCCGGACGAG 60.519 63.158 6.12 5.50 0.00 4.18
475 493 1.680989 TGCTTGGATCCGGACGAGA 60.681 57.895 6.12 0.00 0.00 4.04
476 494 1.227002 GCTTGGATCCGGACGAGAC 60.227 63.158 6.12 0.00 0.00 3.36
477 495 1.668101 GCTTGGATCCGGACGAGACT 61.668 60.000 6.12 0.00 0.00 3.24
478 496 0.818296 CTTGGATCCGGACGAGACTT 59.182 55.000 6.12 0.00 0.00 3.01
479 497 0.530744 TTGGATCCGGACGAGACTTG 59.469 55.000 6.12 0.00 0.00 3.16
480 498 1.227002 GGATCCGGACGAGACTTGC 60.227 63.158 6.12 0.00 0.00 4.01
481 499 1.227002 GATCCGGACGAGACTTGCC 60.227 63.158 6.12 0.00 0.00 4.52
482 500 1.668101 GATCCGGACGAGACTTGCCT 61.668 60.000 6.12 0.00 0.00 4.75
483 501 1.949847 ATCCGGACGAGACTTGCCTG 61.950 60.000 6.12 0.00 0.00 4.85
484 502 2.811317 CGGACGAGACTTGCCTGC 60.811 66.667 0.00 0.00 0.00 4.85
485 503 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
486 504 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
487 505 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
488 506 1.882989 GACGAGACTTGCCTGCTCCT 61.883 60.000 0.00 0.00 0.00 3.69
489 507 1.294780 CGAGACTTGCCTGCTCCTT 59.705 57.895 0.00 0.00 0.00 3.36
490 508 0.739112 CGAGACTTGCCTGCTCCTTC 60.739 60.000 0.00 0.00 0.00 3.46
491 509 0.392327 GAGACTTGCCTGCTCCTTCC 60.392 60.000 0.00 0.00 0.00 3.46
492 510 1.377856 GACTTGCCTGCTCCTTCCC 60.378 63.158 0.00 0.00 0.00 3.97
493 511 2.044551 CTTGCCTGCTCCTTCCCC 60.045 66.667 0.00 0.00 0.00 4.81
494 512 3.984193 CTTGCCTGCTCCTTCCCCG 62.984 68.421 0.00 0.00 0.00 5.73
496 514 4.785453 GCCTGCTCCTTCCCCGTG 62.785 72.222 0.00 0.00 0.00 4.94
497 515 4.785453 CCTGCTCCTTCCCCGTGC 62.785 72.222 0.00 0.00 0.00 5.34
498 516 3.710722 CTGCTCCTTCCCCGTGCT 61.711 66.667 0.00 0.00 0.00 4.40
499 517 3.672295 CTGCTCCTTCCCCGTGCTC 62.672 68.421 0.00 0.00 0.00 4.26
500 518 4.475135 GCTCCTTCCCCGTGCTCC 62.475 72.222 0.00 0.00 0.00 4.70
501 519 3.787001 CTCCTTCCCCGTGCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
502 520 4.649705 TCCTTCCCCGTGCTCCCA 62.650 66.667 0.00 0.00 0.00 4.37
503 521 3.411517 CCTTCCCCGTGCTCCCAT 61.412 66.667 0.00 0.00 0.00 4.00
504 522 2.190578 CTTCCCCGTGCTCCCATC 59.809 66.667 0.00 0.00 0.00 3.51
505 523 2.285368 TTCCCCGTGCTCCCATCT 60.285 61.111 0.00 0.00 0.00 2.90
506 524 2.599645 CTTCCCCGTGCTCCCATCTG 62.600 65.000 0.00 0.00 0.00 2.90
507 525 3.402681 CCCCGTGCTCCCATCTGT 61.403 66.667 0.00 0.00 0.00 3.41
508 526 2.124983 CCCGTGCTCCCATCTGTG 60.125 66.667 0.00 0.00 0.00 3.66
509 527 2.821366 CCGTGCTCCCATCTGTGC 60.821 66.667 0.00 0.00 0.00 4.57
510 528 2.267006 CGTGCTCCCATCTGTGCT 59.733 61.111 0.00 0.00 0.00 4.40
511 529 1.812922 CGTGCTCCCATCTGTGCTC 60.813 63.158 0.00 0.00 0.00 4.26
512 530 1.451028 GTGCTCCCATCTGTGCTCC 60.451 63.158 0.00 0.00 0.00 4.70
513 531 2.191641 GCTCCCATCTGTGCTCCC 59.808 66.667 0.00 0.00 0.00 4.30
514 532 2.503061 CTCCCATCTGTGCTCCCG 59.497 66.667 0.00 0.00 0.00 5.14
515 533 3.746949 CTCCCATCTGTGCTCCCGC 62.747 68.421 0.00 0.00 0.00 6.13
517 535 4.457496 CCATCTGTGCTCCCGCGT 62.457 66.667 4.92 0.00 39.65 6.01
518 536 2.494445 CATCTGTGCTCCCGCGTA 59.506 61.111 4.92 0.00 39.65 4.42
519 537 1.878522 CATCTGTGCTCCCGCGTAC 60.879 63.158 4.92 0.00 39.65 3.67
520 538 3.411418 ATCTGTGCTCCCGCGTACG 62.411 63.158 11.84 11.84 39.65 3.67
521 539 4.415332 CTGTGCTCCCGCGTACGT 62.415 66.667 17.90 0.00 39.65 3.57
522 540 4.710695 TGTGCTCCCGCGTACGTG 62.711 66.667 21.58 21.58 39.65 4.49
526 544 4.430765 CTCCCGCGTACGTGGCTT 62.431 66.667 36.56 0.00 43.94 4.35
527 545 4.728102 TCCCGCGTACGTGGCTTG 62.728 66.667 36.56 25.05 43.94 4.01
528 546 4.728102 CCCGCGTACGTGGCTTGA 62.728 66.667 36.56 0.00 43.94 3.02
529 547 2.508439 CCGCGTACGTGGCTTGAT 60.508 61.111 32.68 0.00 39.06 2.57
530 548 2.098233 CCGCGTACGTGGCTTGATT 61.098 57.895 32.68 0.00 39.06 2.57
531 549 1.632046 CCGCGTACGTGGCTTGATTT 61.632 55.000 32.68 0.00 39.06 2.17
532 550 0.518355 CGCGTACGTGGCTTGATTTG 60.518 55.000 20.84 0.00 33.53 2.32
533 551 0.793861 GCGTACGTGGCTTGATTTGA 59.206 50.000 17.90 0.00 0.00 2.69
534 552 1.396996 GCGTACGTGGCTTGATTTGAT 59.603 47.619 17.90 0.00 0.00 2.57
535 553 2.159572 GCGTACGTGGCTTGATTTGATT 60.160 45.455 17.90 0.00 0.00 2.57
536 554 3.416277 CGTACGTGGCTTGATTTGATTG 58.584 45.455 7.22 0.00 0.00 2.67
537 555 3.727673 CGTACGTGGCTTGATTTGATTGG 60.728 47.826 7.22 0.00 0.00 3.16
538 556 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
539 557 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
540 558 3.320541 ACGTGGCTTGATTTGATTGGAAA 59.679 39.130 0.00 0.00 0.00 3.13
541 559 4.202202 ACGTGGCTTGATTTGATTGGAAAA 60.202 37.500 0.00 0.00 0.00 2.29
542 560 4.749099 CGTGGCTTGATTTGATTGGAAAAA 59.251 37.500 0.00 0.00 0.00 1.94
559 577 2.312424 AAAAATAAAGTCCGGCCCCA 57.688 45.000 0.00 0.00 0.00 4.96
560 578 2.543037 AAAATAAAGTCCGGCCCCAT 57.457 45.000 0.00 0.00 0.00 4.00
561 579 2.067365 AAATAAAGTCCGGCCCCATC 57.933 50.000 0.00 0.00 0.00 3.51
562 580 0.185175 AATAAAGTCCGGCCCCATCC 59.815 55.000 0.00 0.00 0.00 3.51
563 581 1.716028 ATAAAGTCCGGCCCCATCCC 61.716 60.000 0.00 0.00 0.00 3.85
569 587 3.738481 CGGCCCCATCCCCTGAAA 61.738 66.667 0.00 0.00 0.00 2.69
570 588 2.777146 GGCCCCATCCCCTGAAAA 59.223 61.111 0.00 0.00 0.00 2.29
571 589 1.314518 GGCCCCATCCCCTGAAAAT 59.685 57.895 0.00 0.00 0.00 1.82
572 590 0.326522 GGCCCCATCCCCTGAAAATT 60.327 55.000 0.00 0.00 0.00 1.82
573 591 1.062505 GGCCCCATCCCCTGAAAATTA 60.063 52.381 0.00 0.00 0.00 1.40
574 592 2.319844 GCCCCATCCCCTGAAAATTAG 58.680 52.381 0.00 0.00 0.00 1.73
575 593 2.962859 CCCCATCCCCTGAAAATTAGG 58.037 52.381 0.00 0.00 35.01 2.69
601 619 7.978925 GGGGGAGATGATTAGATTAGAAAAGA 58.021 38.462 0.00 0.00 0.00 2.52
602 620 8.440771 GGGGGAGATGATTAGATTAGAAAAGAA 58.559 37.037 0.00 0.00 0.00 2.52
603 621 9.853177 GGGGAGATGATTAGATTAGAAAAGAAA 57.147 33.333 0.00 0.00 0.00 2.52
631 649 9.829507 AGAGAAAATAACAGTCATAGGATGAAG 57.170 33.333 0.00 0.00 41.69 3.02
632 650 9.606631 GAGAAAATAACAGTCATAGGATGAAGT 57.393 33.333 0.00 0.00 41.69 3.01
633 651 9.388506 AGAAAATAACAGTCATAGGATGAAGTG 57.611 33.333 0.00 0.00 41.69 3.16
634 652 8.511604 AAAATAACAGTCATAGGATGAAGTGG 57.488 34.615 0.00 0.00 41.69 4.00
635 653 4.494091 AACAGTCATAGGATGAAGTGGG 57.506 45.455 0.00 0.00 41.69 4.61
636 654 3.724478 ACAGTCATAGGATGAAGTGGGA 58.276 45.455 0.00 0.00 41.69 4.37
637 655 3.708631 ACAGTCATAGGATGAAGTGGGAG 59.291 47.826 0.00 0.00 41.69 4.30
638 656 2.703007 AGTCATAGGATGAAGTGGGAGC 59.297 50.000 0.00 0.00 41.69 4.70
639 657 2.435805 GTCATAGGATGAAGTGGGAGCA 59.564 50.000 0.00 0.00 41.69 4.26
640 658 2.435805 TCATAGGATGAAGTGGGAGCAC 59.564 50.000 0.00 0.00 36.11 4.40
641 659 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
642 660 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
643 661 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
644 662 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
645 663 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
646 664 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
647 665 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
648 666 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
649 667 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
650 668 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
651 669 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
652 670 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
653 671 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
654 672 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
655 673 2.203252 CACGGATGGGAGCATGGG 60.203 66.667 0.00 0.00 0.00 4.00
656 674 2.366837 ACGGATGGGAGCATGGGA 60.367 61.111 0.00 0.00 0.00 4.37
657 675 1.771746 ACGGATGGGAGCATGGGAT 60.772 57.895 0.00 0.00 0.00 3.85
658 676 1.002868 CGGATGGGAGCATGGGATC 60.003 63.158 0.00 0.00 0.00 3.36
664 682 3.172208 GGAGCATGGGATCCTACCT 57.828 57.895 12.58 5.74 46.27 3.08
665 683 1.439543 GGAGCATGGGATCCTACCTT 58.560 55.000 12.58 0.00 46.27 3.50
798 818 2.836360 GCCCATGCTCCACCCATG 60.836 66.667 0.00 0.00 39.74 3.66
799 819 2.685366 CCCATGCTCCACCCATGT 59.315 61.111 0.00 0.00 38.67 3.21
800 820 1.000739 CCCATGCTCCACCCATGTT 59.999 57.895 0.00 0.00 38.67 2.71
889 920 2.901249 CCTATTAATACCCCGGATGCG 58.099 52.381 0.73 0.00 0.00 4.73
963 998 4.742417 TCTCTCATCTTCTTCTTCTTGCG 58.258 43.478 0.00 0.00 0.00 4.85
966 1001 3.589988 TCATCTTCTTCTTCTTGCGACC 58.410 45.455 0.00 0.00 0.00 4.79
981 1016 0.109873 CGACCAAACGAGCGTCTAGT 60.110 55.000 0.00 0.00 35.09 2.57
1176 1220 2.350458 GGGGCACGGCATGATGTTT 61.350 57.895 0.00 0.00 0.00 2.83
1427 1471 4.907579 GCTTCTTGCTTCTTCAATCTAGC 58.092 43.478 0.00 0.00 38.95 3.42
1476 1520 1.535462 ACATGCCTTCTAAACGTGTGC 59.465 47.619 0.00 0.00 32.48 4.57
1486 1530 3.810941 TCTAAACGTGTGCTTTCCGATTT 59.189 39.130 0.00 0.00 0.00 2.17
1487 1531 2.399396 AACGTGTGCTTTCCGATTTG 57.601 45.000 0.00 0.00 0.00 2.32
1493 1537 4.109050 GTGTGCTTTCCGATTTGTTTGAA 58.891 39.130 0.00 0.00 0.00 2.69
1499 1543 2.302260 TCCGATTTGTTTGAACAGGCA 58.698 42.857 0.00 0.00 40.50 4.75
1710 1762 1.134907 GTCCTCGTCGTCTCTCTCTCT 60.135 57.143 0.00 0.00 0.00 3.10
1711 1763 1.551430 TCCTCGTCGTCTCTCTCTCTT 59.449 52.381 0.00 0.00 0.00 2.85
1873 1937 2.993144 GAGTCGTCGTCGTCGTCGT 61.993 63.158 18.44 3.54 45.27 4.34
1947 2011 0.396556 AACGGGGCAGGAAAACTTGT 60.397 50.000 0.00 0.00 0.00 3.16
1949 2013 0.821711 CGGGGCAGGAAAACTTGTCA 60.822 55.000 0.00 0.00 0.00 3.58
1986 2060 3.484229 CGAACATGCTCACGATTCTTTCC 60.484 47.826 0.00 0.00 0.00 3.13
2044 2122 5.613358 AATTCTAGTGAAACCGCTTCTTG 57.387 39.130 0.00 0.00 37.80 3.02
2053 2131 2.664851 CGCTTCTTGGTGGCACGA 60.665 61.111 12.17 4.52 0.00 4.35
2075 2153 5.108593 CGATCGATCAATCAAACGAGTACTG 60.109 44.000 24.40 0.00 38.12 2.74
2079 2157 5.052304 CGATCAATCAAACGAGTACTGCTAC 60.052 44.000 0.00 0.00 0.00 3.58
2084 2162 7.335171 TCAATCAAACGAGTACTGCTACTACTA 59.665 37.037 0.00 0.00 32.96 1.82
2085 2163 6.414408 TCAAACGAGTACTGCTACTACTAC 57.586 41.667 0.00 0.00 32.96 2.73
2105 2236 9.182214 CTACTACTACTATTCTACCACCACAAA 57.818 37.037 0.00 0.00 0.00 2.83
2106 2237 8.064336 ACTACTACTATTCTACCACCACAAAG 57.936 38.462 0.00 0.00 0.00 2.77
2107 2238 6.295719 ACTACTATTCTACCACCACAAAGG 57.704 41.667 0.00 0.00 45.67 3.11
2122 2273 4.475944 CACAAAGGAAAAATCTACCGCTG 58.524 43.478 0.00 0.00 0.00 5.18
2126 2277 6.128007 ACAAAGGAAAAATCTACCGCTGTATG 60.128 38.462 0.00 0.00 0.00 2.39
2163 2315 0.744414 AGTTGCGCACGCCATTAGAT 60.744 50.000 11.12 0.00 41.09 1.98
2164 2316 0.934496 GTTGCGCACGCCATTAGATA 59.066 50.000 11.12 0.00 41.09 1.98
2165 2317 1.329292 GTTGCGCACGCCATTAGATAA 59.671 47.619 11.12 0.00 41.09 1.75
2166 2318 1.217001 TGCGCACGCCATTAGATAAG 58.783 50.000 5.66 0.00 41.09 1.73
2167 2319 1.202475 TGCGCACGCCATTAGATAAGA 60.202 47.619 5.66 0.00 41.09 2.10
2190 2346 2.182827 TGCTCTAGGACAGCAACATCT 58.817 47.619 2.27 0.00 44.02 2.90
2191 2347 2.093816 TGCTCTAGGACAGCAACATCTG 60.094 50.000 2.27 0.00 44.02 2.90
2254 2414 4.147449 TGGCCGGAGCATCTGTCG 62.147 66.667 5.05 0.00 40.87 4.35
2440 2619 0.330267 ATCGAATCCCCACCCGTTTT 59.670 50.000 0.00 0.00 0.00 2.43
2511 2692 2.946990 TGGAGAAGCGATGATACACGTA 59.053 45.455 0.00 0.00 0.00 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 4.901785 AGGGATAACACTTCTAGGAGGA 57.098 45.455 2.30 0.00 0.00 3.71
34 36 9.398538 GTTACCACACAATAATAAGGGATAACA 57.601 33.333 0.00 0.00 0.00 2.41
78 80 0.322816 AGCTTCCATGGTGCGTTCAT 60.323 50.000 20.58 6.24 0.00 2.57
79 81 0.537143 AAGCTTCCATGGTGCGTTCA 60.537 50.000 20.58 0.00 0.00 3.18
80 82 0.598065 AAAGCTTCCATGGTGCGTTC 59.402 50.000 20.33 5.03 0.00 3.95
81 83 0.598065 GAAAGCTTCCATGGTGCGTT 59.402 50.000 23.75 23.75 0.00 4.84
82 84 0.537143 TGAAAGCTTCCATGGTGCGT 60.537 50.000 20.58 16.86 0.00 5.24
83 85 0.813184 ATGAAAGCTTCCATGGTGCG 59.187 50.000 20.58 9.28 0.00 5.34
84 86 4.176271 GTTAATGAAAGCTTCCATGGTGC 58.824 43.478 19.68 19.68 0.00 5.01
85 87 5.183713 TCTGTTAATGAAAGCTTCCATGGTG 59.816 40.000 12.58 7.38 0.00 4.17
86 88 5.324409 TCTGTTAATGAAAGCTTCCATGGT 58.676 37.500 12.58 0.00 0.00 3.55
185 197 7.575414 TTGTCTACTTGCAACATAGGAAAAA 57.425 32.000 11.38 2.09 0.00 1.94
209 221 4.464008 TGTGAAAGGAAAGACAAGATGCT 58.536 39.130 0.00 0.00 0.00 3.79
210 222 4.836125 TGTGAAAGGAAAGACAAGATGC 57.164 40.909 0.00 0.00 0.00 3.91
276 289 2.611292 GCAGTGCTTAGATCGCAATCTT 59.389 45.455 8.18 0.00 42.39 2.40
289 302 5.599732 CTCTCTAGTCATATTGCAGTGCTT 58.400 41.667 17.60 6.52 0.00 3.91
341 354 4.985538 ACTGAAGGAAATTTGAGCTGGTA 58.014 39.130 0.00 0.00 0.00 3.25
367 380 2.162681 CTTCAGTGGGGGTGATGTTTC 58.837 52.381 0.00 0.00 0.00 2.78
379 393 4.469945 TGGAATTAGGTACTCCTTCAGTGG 59.530 45.833 0.00 0.00 42.12 4.00
380 394 5.395768 CCTGGAATTAGGTACTCCTTCAGTG 60.396 48.000 0.00 0.00 42.12 3.66
381 395 4.717280 CCTGGAATTAGGTACTCCTTCAGT 59.283 45.833 0.00 0.00 42.12 3.41
382 396 4.443598 GCCTGGAATTAGGTACTCCTTCAG 60.444 50.000 0.00 0.00 42.12 3.02
383 397 3.454812 GCCTGGAATTAGGTACTCCTTCA 59.545 47.826 0.00 0.00 42.12 3.02
409 423 2.096174 TCCTGAACGGTCGTTTTGTTTG 59.904 45.455 10.15 0.00 38.60 2.93
461 479 1.945354 GCAAGTCTCGTCCGGATCCA 61.945 60.000 7.81 0.00 0.00 3.41
468 486 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
469 487 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
470 488 1.476007 AAGGAGCAGGCAAGTCTCGT 61.476 55.000 0.00 0.00 0.00 4.18
472 490 0.392327 GGAAGGAGCAGGCAAGTCTC 60.392 60.000 0.00 0.00 0.00 3.36
473 491 1.682257 GGAAGGAGCAGGCAAGTCT 59.318 57.895 0.00 0.00 0.00 3.24
474 492 1.377856 GGGAAGGAGCAGGCAAGTC 60.378 63.158 0.00 0.00 0.00 3.01
475 493 2.759795 GGGAAGGAGCAGGCAAGT 59.240 61.111 0.00 0.00 0.00 3.16
476 494 2.044551 GGGGAAGGAGCAGGCAAG 60.045 66.667 0.00 0.00 0.00 4.01
477 495 4.033776 CGGGGAAGGAGCAGGCAA 62.034 66.667 0.00 0.00 0.00 4.52
479 497 4.785453 CACGGGGAAGGAGCAGGC 62.785 72.222 0.00 0.00 0.00 4.85
480 498 4.785453 GCACGGGGAAGGAGCAGG 62.785 72.222 0.00 0.00 0.00 4.85
481 499 3.672295 GAGCACGGGGAAGGAGCAG 62.672 68.421 0.00 0.00 0.00 4.24
482 500 3.706373 GAGCACGGGGAAGGAGCA 61.706 66.667 0.00 0.00 0.00 4.26
483 501 4.475135 GGAGCACGGGGAAGGAGC 62.475 72.222 0.00 0.00 0.00 4.70
484 502 3.787001 GGGAGCACGGGGAAGGAG 61.787 72.222 0.00 0.00 0.00 3.69
485 503 3.943137 ATGGGAGCACGGGGAAGGA 62.943 63.158 0.00 0.00 0.00 3.36
486 504 3.406595 GATGGGAGCACGGGGAAGG 62.407 68.421 0.00 0.00 0.00 3.46
487 505 2.190578 GATGGGAGCACGGGGAAG 59.809 66.667 0.00 0.00 0.00 3.46
488 506 2.285368 AGATGGGAGCACGGGGAA 60.285 61.111 0.00 0.00 0.00 3.97
489 507 3.083349 CAGATGGGAGCACGGGGA 61.083 66.667 0.00 0.00 0.00 4.81
490 508 3.402681 ACAGATGGGAGCACGGGG 61.403 66.667 0.00 0.00 0.00 5.73
491 509 2.124983 CACAGATGGGAGCACGGG 60.125 66.667 0.00 0.00 0.00 5.28
492 510 2.821366 GCACAGATGGGAGCACGG 60.821 66.667 0.00 0.00 0.00 4.94
493 511 1.812922 GAGCACAGATGGGAGCACG 60.813 63.158 0.00 0.00 0.00 5.34
494 512 1.451028 GGAGCACAGATGGGAGCAC 60.451 63.158 0.00 0.00 0.00 4.40
495 513 2.673200 GGGAGCACAGATGGGAGCA 61.673 63.158 0.00 0.00 0.00 4.26
496 514 2.191641 GGGAGCACAGATGGGAGC 59.808 66.667 0.00 0.00 0.00 4.70
497 515 2.503061 CGGGAGCACAGATGGGAG 59.497 66.667 0.00 0.00 0.00 4.30
509 527 4.430765 AAGCCACGTACGCGGGAG 62.431 66.667 25.61 2.82 45.97 4.30
510 528 4.728102 CAAGCCACGTACGCGGGA 62.728 66.667 25.61 0.00 45.97 5.14
511 529 4.728102 TCAAGCCACGTACGCGGG 62.728 66.667 22.89 20.94 43.45 6.13
512 530 1.632046 AAATCAAGCCACGTACGCGG 61.632 55.000 17.94 17.94 43.45 6.46
513 531 0.518355 CAAATCAAGCCACGTACGCG 60.518 55.000 16.72 3.53 44.93 6.01
514 532 0.793861 TCAAATCAAGCCACGTACGC 59.206 50.000 16.72 0.00 0.00 4.42
515 533 3.416277 CAATCAAATCAAGCCACGTACG 58.584 45.455 15.01 15.01 0.00 3.67
516 534 3.438781 TCCAATCAAATCAAGCCACGTAC 59.561 43.478 0.00 0.00 0.00 3.67
517 535 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
518 536 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
519 537 3.574284 TTCCAATCAAATCAAGCCACG 57.426 42.857 0.00 0.00 0.00 4.94
540 558 2.312424 TGGGGCCGGACTTTATTTTT 57.688 45.000 7.57 0.00 0.00 1.94
541 559 2.384828 GATGGGGCCGGACTTTATTTT 58.615 47.619 7.57 0.00 0.00 1.82
542 560 1.411074 GGATGGGGCCGGACTTTATTT 60.411 52.381 7.57 0.00 0.00 1.40
543 561 0.185175 GGATGGGGCCGGACTTTATT 59.815 55.000 7.57 0.00 0.00 1.40
544 562 1.716028 GGGATGGGGCCGGACTTTAT 61.716 60.000 7.57 0.00 0.00 1.40
545 563 2.380285 GGGATGGGGCCGGACTTTA 61.380 63.158 7.57 0.00 0.00 1.85
546 564 3.739613 GGGATGGGGCCGGACTTT 61.740 66.667 7.57 0.00 0.00 2.66
552 570 2.588029 ATTTTCAGGGGATGGGGCCG 62.588 60.000 0.00 0.00 0.00 6.13
553 571 0.326522 AATTTTCAGGGGATGGGGCC 60.327 55.000 0.00 0.00 0.00 5.80
554 572 2.319844 CTAATTTTCAGGGGATGGGGC 58.680 52.381 0.00 0.00 0.00 5.80
555 573 2.962859 CCTAATTTTCAGGGGATGGGG 58.037 52.381 0.00 0.00 0.00 4.96
576 594 7.978925 TCTTTTCTAATCTAATCATCTCCCCC 58.021 38.462 0.00 0.00 0.00 5.40
577 595 9.853177 TTTCTTTTCTAATCTAATCATCTCCCC 57.147 33.333 0.00 0.00 0.00 4.81
605 623 9.829507 CTTCATCCTATGACTGTTATTTTCTCT 57.170 33.333 0.00 0.00 39.39 3.10
606 624 9.606631 ACTTCATCCTATGACTGTTATTTTCTC 57.393 33.333 0.00 0.00 39.39 2.87
607 625 9.388506 CACTTCATCCTATGACTGTTATTTTCT 57.611 33.333 0.00 0.00 39.39 2.52
608 626 8.616076 CCACTTCATCCTATGACTGTTATTTTC 58.384 37.037 0.00 0.00 39.39 2.29
609 627 7.557719 CCCACTTCATCCTATGACTGTTATTTT 59.442 37.037 0.00 0.00 39.39 1.82
610 628 7.056635 CCCACTTCATCCTATGACTGTTATTT 58.943 38.462 0.00 0.00 39.39 1.40
611 629 6.386927 TCCCACTTCATCCTATGACTGTTATT 59.613 38.462 0.00 0.00 39.39 1.40
612 630 5.905331 TCCCACTTCATCCTATGACTGTTAT 59.095 40.000 0.00 0.00 39.39 1.89
613 631 5.277250 TCCCACTTCATCCTATGACTGTTA 58.723 41.667 0.00 0.00 39.39 2.41
614 632 4.104086 TCCCACTTCATCCTATGACTGTT 58.896 43.478 0.00 0.00 39.39 3.16
615 633 3.708631 CTCCCACTTCATCCTATGACTGT 59.291 47.826 0.00 0.00 39.39 3.55
616 634 3.494048 GCTCCCACTTCATCCTATGACTG 60.494 52.174 0.00 0.00 39.39 3.51
617 635 2.703007 GCTCCCACTTCATCCTATGACT 59.297 50.000 0.00 0.00 39.39 3.41
618 636 2.435805 TGCTCCCACTTCATCCTATGAC 59.564 50.000 0.00 0.00 39.39 3.06
619 637 2.435805 GTGCTCCCACTTCATCCTATGA 59.564 50.000 0.00 0.00 38.93 2.15
620 638 2.804572 CGTGCTCCCACTTCATCCTATG 60.805 54.545 0.00 0.00 39.86 2.23
621 639 1.414181 CGTGCTCCCACTTCATCCTAT 59.586 52.381 0.00 0.00 39.86 2.57
622 640 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
623 641 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
624 642 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
625 643 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
626 644 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
627 645 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
628 646 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
629 647 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
630 648 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
631 649 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
632 650 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
633 651 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
634 652 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
635 653 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
636 654 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
637 655 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
638 656 2.060567 ATCCCATGCTCCCATCCGTG 62.061 60.000 0.00 0.00 0.00 4.94
639 657 1.771746 ATCCCATGCTCCCATCCGT 60.772 57.895 0.00 0.00 0.00 4.69
640 658 1.002868 GATCCCATGCTCCCATCCG 60.003 63.158 0.00 0.00 0.00 4.18
641 659 1.138863 AGGATCCCATGCTCCCATCC 61.139 60.000 8.55 0.00 34.30 3.51
642 660 1.280421 GTAGGATCCCATGCTCCCATC 59.720 57.143 8.55 0.00 31.49 3.51
643 661 1.366319 GTAGGATCCCATGCTCCCAT 58.634 55.000 8.55 0.00 31.49 4.00
644 662 0.768221 GGTAGGATCCCATGCTCCCA 60.768 60.000 8.55 0.00 31.49 4.37
645 663 0.474660 AGGTAGGATCCCATGCTCCC 60.475 60.000 8.55 0.00 31.49 4.30
646 664 1.349357 GAAGGTAGGATCCCATGCTCC 59.651 57.143 8.55 2.40 31.56 4.70
647 665 1.349357 GGAAGGTAGGATCCCATGCTC 59.651 57.143 8.55 0.00 31.56 4.26
648 666 1.439543 GGAAGGTAGGATCCCATGCT 58.560 55.000 8.55 0.00 34.41 3.79
654 672 1.425694 GGACAGGGAAGGTAGGATCC 58.574 60.000 2.48 2.48 34.85 3.36
655 673 1.041437 CGGACAGGGAAGGTAGGATC 58.959 60.000 0.00 0.00 0.00 3.36
656 674 0.338814 ACGGACAGGGAAGGTAGGAT 59.661 55.000 0.00 0.00 0.00 3.24
657 675 0.613853 CACGGACAGGGAAGGTAGGA 60.614 60.000 0.00 0.00 0.00 2.94
658 676 0.613853 TCACGGACAGGGAAGGTAGG 60.614 60.000 0.00 0.00 0.00 3.18
659 677 1.067071 GTTCACGGACAGGGAAGGTAG 60.067 57.143 0.00 0.00 44.04 3.18
660 678 0.971386 GTTCACGGACAGGGAAGGTA 59.029 55.000 0.00 0.00 44.04 3.08
661 679 1.752833 GTTCACGGACAGGGAAGGT 59.247 57.895 0.00 0.00 44.04 3.50
662 680 1.374252 CGTTCACGGACAGGGAAGG 60.374 63.158 0.00 0.00 44.04 3.46
663 681 2.027625 GCGTTCACGGACAGGGAAG 61.028 63.158 0.81 0.00 44.04 3.46
664 682 2.029964 GCGTTCACGGACAGGGAA 59.970 61.111 0.81 0.00 40.56 3.97
665 683 3.998672 GGCGTTCACGGACAGGGA 61.999 66.667 0.81 0.00 40.23 4.20
796 816 1.674962 GAGCGGACGAGTAGGTAACAT 59.325 52.381 0.00 0.00 41.41 2.71
797 817 1.089920 GAGCGGACGAGTAGGTAACA 58.910 55.000 0.00 0.00 41.41 2.41
798 818 0.027324 CGAGCGGACGAGTAGGTAAC 59.973 60.000 0.00 0.00 35.09 2.50
799 819 1.709147 GCGAGCGGACGAGTAGGTAA 61.709 60.000 0.00 0.00 35.09 2.85
800 820 2.176273 GCGAGCGGACGAGTAGGTA 61.176 63.158 0.00 0.00 35.09 3.08
895 926 1.804396 CTGTTGGTTTGCGGCCATGA 61.804 55.000 2.24 0.00 35.71 3.07
963 998 2.061740 AACTAGACGCTCGTTTGGTC 57.938 50.000 0.00 0.00 0.00 4.02
966 1001 2.864968 AGCTAACTAGACGCTCGTTTG 58.135 47.619 0.00 3.08 0.00 2.93
981 1016 4.506654 GCCATCGTTCGAATCTTTAGCTAA 59.493 41.667 0.86 0.86 0.00 3.09
1414 1458 2.094026 TCGCAGCAGCTAGATTGAAGAA 60.094 45.455 0.00 0.00 39.10 2.52
1415 1459 1.478105 TCGCAGCAGCTAGATTGAAGA 59.522 47.619 0.00 0.00 39.10 2.87
1417 1461 2.274437 CTTCGCAGCAGCTAGATTGAA 58.726 47.619 0.00 0.00 39.10 2.69
1419 1463 1.592081 GACTTCGCAGCAGCTAGATTG 59.408 52.381 0.00 0.00 39.10 2.67
1420 1464 1.205655 TGACTTCGCAGCAGCTAGATT 59.794 47.619 0.00 0.00 39.10 2.40
1423 1467 1.432514 TTTGACTTCGCAGCAGCTAG 58.567 50.000 0.00 0.00 39.10 3.42
1425 1469 1.242076 AATTTGACTTCGCAGCAGCT 58.758 45.000 0.00 0.00 39.10 4.24
1426 1470 2.476854 CCTAATTTGACTTCGCAGCAGC 60.477 50.000 0.00 0.00 37.42 5.25
1427 1471 3.002791 TCCTAATTTGACTTCGCAGCAG 58.997 45.455 0.00 0.00 0.00 4.24
1476 1520 3.735746 GCCTGTTCAAACAAATCGGAAAG 59.264 43.478 3.75 0.00 38.66 2.62
1499 1543 0.892358 CCATGACCTGCTGCACAGTT 60.892 55.000 0.00 1.76 45.68 3.16
1502 1546 1.002990 CTCCATGACCTGCTGCACA 60.003 57.895 0.00 0.00 0.00 4.57
1710 1762 1.667830 CGCTGCACCGAGGAAAGAA 60.668 57.895 0.00 0.00 0.00 2.52
1711 1763 2.048222 CGCTGCACCGAGGAAAGA 60.048 61.111 0.00 0.00 0.00 2.52
1853 1917 1.225422 GACGACGACGACGACTCTG 60.225 63.158 25.15 0.00 42.66 3.35
1873 1937 1.098712 GTCCCCATTATTTGCCGCGA 61.099 55.000 8.23 0.00 0.00 5.87
1947 2011 1.370609 TCGTTCGGCAGTGTTTTTGA 58.629 45.000 0.00 0.00 0.00 2.69
1949 2013 1.469308 TGTTCGTTCGGCAGTGTTTTT 59.531 42.857 0.00 0.00 0.00 1.94
1986 2060 5.129485 TGATCTTTTACTCCCAGAGCCTAAG 59.871 44.000 0.00 0.00 32.04 2.18
2026 2104 2.480419 CACCAAGAAGCGGTTTCACTAG 59.520 50.000 0.00 0.00 38.31 2.57
2027 2105 2.489971 CACCAAGAAGCGGTTTCACTA 58.510 47.619 0.00 0.00 38.31 2.74
2031 2109 1.285950 GCCACCAAGAAGCGGTTTC 59.714 57.895 0.00 0.00 33.25 2.78
2032 2110 1.454847 TGCCACCAAGAAGCGGTTT 60.455 52.632 0.00 0.00 33.25 3.27
2033 2111 2.193536 GTGCCACCAAGAAGCGGTT 61.194 57.895 0.00 0.00 33.25 4.44
2034 2112 2.594592 GTGCCACCAAGAAGCGGT 60.595 61.111 0.00 0.00 37.16 5.68
2044 2122 0.861837 GATTGATCGATCGTGCCACC 59.138 55.000 20.03 2.12 0.00 4.61
2053 2131 4.504461 GCAGTACTCGTTTGATTGATCGAT 59.496 41.667 0.00 0.00 0.00 3.59
2075 2153 8.153550 TGGTGGTAGAATAGTAGTAGTAGTAGC 58.846 40.741 0.00 0.00 0.00 3.58
2079 2157 8.743085 TTGTGGTGGTAGAATAGTAGTAGTAG 57.257 38.462 0.00 0.00 0.00 2.57
2084 2162 6.021030 TCCTTTGTGGTGGTAGAATAGTAGT 58.979 40.000 0.00 0.00 37.07 2.73
2085 2163 6.540438 TCCTTTGTGGTGGTAGAATAGTAG 57.460 41.667 0.00 0.00 37.07 2.57
2095 2223 4.587262 GGTAGATTTTTCCTTTGTGGTGGT 59.413 41.667 0.00 0.00 37.07 4.16
2105 2236 4.876107 CACATACAGCGGTAGATTTTTCCT 59.124 41.667 2.53 0.00 31.88 3.36
2106 2237 4.634443 ACACATACAGCGGTAGATTTTTCC 59.366 41.667 2.53 0.00 31.88 3.13
2107 2238 5.796350 ACACATACAGCGGTAGATTTTTC 57.204 39.130 2.53 0.00 31.88 2.29
2163 2315 3.431415 TGCTGTCCTAGAGCAAGTCTTA 58.569 45.455 2.27 0.00 43.47 2.10
2164 2316 2.251818 TGCTGTCCTAGAGCAAGTCTT 58.748 47.619 2.27 0.00 43.47 3.01
2165 2317 1.930251 TGCTGTCCTAGAGCAAGTCT 58.070 50.000 2.27 0.00 43.47 3.24
2254 2414 2.029844 GAACCTCGCAGCAGGACAC 61.030 63.158 15.48 5.09 36.96 3.67
2488 2668 2.748605 GTGTATCATCGCTTCTCCAGG 58.251 52.381 0.00 0.00 0.00 4.45
2490 2670 1.749063 ACGTGTATCATCGCTTCTCCA 59.251 47.619 0.00 0.00 0.00 3.86
2511 2692 2.032620 GATCCTCTCCACGTACCACAT 58.967 52.381 0.00 0.00 0.00 3.21
2541 2736 1.064803 GTCATGTTTTCGCACACACCA 59.935 47.619 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.