Multiple sequence alignment - TraesCS6B01G326000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G326000 chr6B 100.000 2703 0 0 1 2703 575332403 575329701 0.000000e+00 4992.0
1 TraesCS6B01G326000 chr6A 88.744 1768 98 35 127 1863 529602376 529600679 0.000000e+00 2069.0
2 TraesCS6B01G326000 chr6A 96.269 402 13 2 2304 2703 529568101 529567700 0.000000e+00 658.0
3 TraesCS6B01G326000 chr6A 84.483 116 5 7 1835 1940 529600666 529600554 4.760000e-18 102.0
4 TraesCS6B01G326000 chr6D 86.910 1780 103 53 127 1863 385234878 385233186 0.000000e+00 1877.0
5 TraesCS6B01G326000 chr6D 90.308 650 49 11 2062 2703 385233037 385232394 0.000000e+00 839.0
6 TraesCS6B01G326000 chr3D 97.030 101 2 1 1938 2038 497083838 497083739 4.630000e-38 169.0
7 TraesCS6B01G326000 chr3D 97.500 80 2 0 1945 2024 307568834 307568755 1.310000e-28 137.0
8 TraesCS6B01G326000 chr7D 96.078 102 4 0 1939 2040 461166005 461166106 1.660000e-37 167.0
9 TraesCS6B01G326000 chr1A 97.000 100 2 1 1939 2038 147491829 147491927 1.660000e-37 167.0
10 TraesCS6B01G326000 chr1A 97.917 96 1 1 1943 2038 528253054 528252960 5.990000e-37 165.0
11 TraesCS6B01G326000 chr2D 96.939 98 2 1 1941 2038 579421470 579421566 2.150000e-36 163.0
12 TraesCS6B01G326000 chr7B 95.098 102 5 0 1939 2040 31838462 31838563 7.740000e-36 161.0
13 TraesCS6B01G326000 chr7B 96.875 96 2 1 1939 2034 594984949 594985043 2.790000e-35 159.0
14 TraesCS6B01G326000 chr7B 92.308 91 7 0 1944 2034 730155204 730155114 2.180000e-26 130.0
15 TraesCS6B01G326000 chr4D 96.000 100 3 1 1939 2038 29093362 29093460 7.740000e-36 161.0
16 TraesCS6B01G326000 chr4D 95.098 102 5 0 1939 2040 108591457 108591356 7.740000e-36 161.0
17 TraesCS6B01G326000 chr4D 96.000 100 3 1 1939 2038 333227604 333227506 7.740000e-36 161.0
18 TraesCS6B01G326000 chr4D 96.053 76 3 0 1946 2021 375564806 375564881 1.020000e-24 124.0
19 TraesCS6B01G326000 chr1B 93.506 77 5 0 1945 2021 599243658 599243582 6.120000e-22 115.0
20 TraesCS6B01G326000 chr1D 92.405 79 6 0 1946 2024 471607746 471607824 2.200000e-21 113.0
21 TraesCS6B01G326000 chr2B 88.158 76 9 0 1946 2021 785067528 785067453 1.030000e-14 91.6
22 TraesCS6B01G326000 chr4B 98.000 50 1 0 1975 2024 657303841 657303792 1.330000e-13 87.9
23 TraesCS6B01G326000 chr3B 85.556 90 3 1 1945 2024 690462280 690462369 4.800000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G326000 chr6B 575329701 575332403 2702 True 4992.0 4992 100.0000 1 2703 1 chr6B.!!$R1 2702
1 TraesCS6B01G326000 chr6A 529600554 529602376 1822 True 1085.5 2069 86.6135 127 1940 2 chr6A.!!$R2 1813
2 TraesCS6B01G326000 chr6D 385232394 385234878 2484 True 1358.0 1877 88.6090 127 2703 2 chr6D.!!$R1 2576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.174845 TGATTCTAACCGGGAGTGCG 59.825 55.0 6.32 0.0 0.0 5.34 F
87 88 0.175073 ATTCTAACCGGGAGTGCGAC 59.825 55.0 6.32 0.0 0.0 5.19 F
1293 1350 0.393077 ACAAGGTGAAGGTGGACGAG 59.607 55.0 0.00 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1505 0.099082 GACGACGACCCAGCTAGAAG 59.901 60.0 0.00 0.00 0.00 2.85 R
1597 1662 0.323087 TCACGGAGAGATGGGAACGA 60.323 55.0 0.00 0.00 0.00 3.85 R
2655 2845 0.035881 TTCTTGCAGCTGACCCAGAG 59.964 55.0 20.43 5.07 32.44 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.983044 ACGATAGCCTCTGTTTCCTTT 57.017 42.857 0.00 0.00 42.67 3.11
21 22 3.863041 ACGATAGCCTCTGTTTCCTTTC 58.137 45.455 0.00 0.00 42.67 2.62
22 23 3.198872 CGATAGCCTCTGTTTCCTTTCC 58.801 50.000 0.00 0.00 0.00 3.13
23 24 3.546724 GATAGCCTCTGTTTCCTTTCCC 58.453 50.000 0.00 0.00 0.00 3.97
24 25 0.405973 AGCCTCTGTTTCCTTTCCCC 59.594 55.000 0.00 0.00 0.00 4.81
25 26 0.612174 GCCTCTGTTTCCTTTCCCCC 60.612 60.000 0.00 0.00 0.00 5.40
26 27 0.322546 CCTCTGTTTCCTTTCCCCCG 60.323 60.000 0.00 0.00 0.00 5.73
27 28 0.322546 CTCTGTTTCCTTTCCCCCGG 60.323 60.000 0.00 0.00 0.00 5.73
28 29 0.768997 TCTGTTTCCTTTCCCCCGGA 60.769 55.000 0.73 0.00 0.00 5.14
29 30 0.331616 CTGTTTCCTTTCCCCCGGAT 59.668 55.000 0.73 0.00 0.00 4.18
30 31 0.781278 TGTTTCCTTTCCCCCGGATT 59.219 50.000 0.73 0.00 0.00 3.01
31 32 1.182667 GTTTCCTTTCCCCCGGATTG 58.817 55.000 0.73 0.00 0.00 2.67
32 33 0.613572 TTTCCTTTCCCCCGGATTGC 60.614 55.000 0.73 0.00 0.00 3.56
33 34 1.506028 TTCCTTTCCCCCGGATTGCT 61.506 55.000 0.73 0.00 0.00 3.91
34 35 0.622154 TCCTTTCCCCCGGATTGCTA 60.622 55.000 0.73 0.00 0.00 3.49
35 36 0.179018 CCTTTCCCCCGGATTGCTAG 60.179 60.000 0.73 0.00 0.00 3.42
36 37 0.819666 CTTTCCCCCGGATTGCTAGC 60.820 60.000 8.10 8.10 0.00 3.42
37 38 2.279037 TTTCCCCCGGATTGCTAGCC 62.279 60.000 13.29 0.00 0.00 3.93
38 39 3.488569 CCCCCGGATTGCTAGCCA 61.489 66.667 13.29 0.19 0.00 4.75
39 40 2.111878 CCCCGGATTGCTAGCCAG 59.888 66.667 13.29 0.00 0.00 4.85
48 49 3.198489 GCTAGCCAGCGGAACTGC 61.198 66.667 2.29 0.00 45.78 4.40
49 50 2.887568 CTAGCCAGCGGAACTGCG 60.888 66.667 0.00 0.00 45.78 5.18
50 51 3.356639 CTAGCCAGCGGAACTGCGA 62.357 63.158 0.00 0.00 45.78 5.10
51 52 3.642778 TAGCCAGCGGAACTGCGAC 62.643 63.158 0.00 0.00 45.78 5.19
53 54 2.357517 CCAGCGGAACTGCGACTT 60.358 61.111 0.00 0.00 45.78 3.01
54 55 1.080093 CCAGCGGAACTGCGACTTA 60.080 57.895 0.00 0.00 45.78 2.24
55 56 1.352156 CCAGCGGAACTGCGACTTAC 61.352 60.000 0.00 0.00 45.78 2.34
56 57 0.388649 CAGCGGAACTGCGACTTACT 60.389 55.000 0.00 0.00 40.19 2.24
57 58 1.135489 CAGCGGAACTGCGACTTACTA 60.135 52.381 0.00 0.00 40.19 1.82
58 59 1.132643 AGCGGAACTGCGACTTACTAG 59.867 52.381 0.00 0.00 40.67 2.57
59 60 1.131883 GCGGAACTGCGACTTACTAGA 59.868 52.381 0.00 0.00 0.00 2.43
60 61 2.415090 GCGGAACTGCGACTTACTAGAA 60.415 50.000 0.00 0.00 0.00 2.10
61 62 3.427243 CGGAACTGCGACTTACTAGAAG 58.573 50.000 0.00 0.00 0.00 2.85
62 63 3.180613 GGAACTGCGACTTACTAGAAGC 58.819 50.000 0.00 0.00 0.00 3.86
63 64 2.546195 ACTGCGACTTACTAGAAGCG 57.454 50.000 0.00 5.76 32.77 4.68
64 65 1.811359 ACTGCGACTTACTAGAAGCGT 59.189 47.619 0.00 0.00 32.77 5.07
65 66 2.159544 ACTGCGACTTACTAGAAGCGTC 60.160 50.000 0.00 0.00 32.77 5.19
66 67 2.082231 TGCGACTTACTAGAAGCGTCT 58.918 47.619 7.47 7.47 37.95 4.18
67 68 2.159558 TGCGACTTACTAGAAGCGTCTG 60.160 50.000 12.79 5.13 35.12 3.51
68 69 2.095532 GCGACTTACTAGAAGCGTCTGA 59.904 50.000 12.79 0.00 35.12 3.27
69 70 3.242804 GCGACTTACTAGAAGCGTCTGAT 60.243 47.826 12.79 2.71 35.12 2.90
70 71 4.731193 GCGACTTACTAGAAGCGTCTGATT 60.731 45.833 12.79 0.00 35.12 2.57
71 72 4.965158 CGACTTACTAGAAGCGTCTGATTC 59.035 45.833 12.79 0.00 40.80 2.52
78 79 2.194271 GAAGCGTCTGATTCTAACCGG 58.806 52.381 0.00 0.00 37.52 5.28
79 80 0.460311 AGCGTCTGATTCTAACCGGG 59.540 55.000 6.32 0.00 0.00 5.73
80 81 0.458669 GCGTCTGATTCTAACCGGGA 59.541 55.000 6.32 0.00 0.00 5.14
81 82 1.536284 GCGTCTGATTCTAACCGGGAG 60.536 57.143 6.32 2.17 0.00 4.30
82 83 1.749634 CGTCTGATTCTAACCGGGAGT 59.250 52.381 6.32 0.00 0.00 3.85
83 84 2.479730 CGTCTGATTCTAACCGGGAGTG 60.480 54.545 6.32 0.00 0.00 3.51
84 85 1.480954 TCTGATTCTAACCGGGAGTGC 59.519 52.381 6.32 0.00 0.00 4.40
85 86 0.174845 TGATTCTAACCGGGAGTGCG 59.825 55.000 6.32 0.00 0.00 5.34
86 87 0.458669 GATTCTAACCGGGAGTGCGA 59.541 55.000 6.32 0.00 0.00 5.10
87 88 0.175073 ATTCTAACCGGGAGTGCGAC 59.825 55.000 6.32 0.00 0.00 5.19
88 89 2.202570 CTAACCGGGAGTGCGACG 60.203 66.667 6.32 0.00 0.00 5.12
89 90 2.985282 TAACCGGGAGTGCGACGT 60.985 61.111 6.32 0.00 0.00 4.34
90 91 2.862347 CTAACCGGGAGTGCGACGTC 62.862 65.000 6.32 5.18 0.00 4.34
93 94 4.052229 CGGGAGTGCGACGTCCTT 62.052 66.667 10.58 0.00 32.90 3.36
94 95 2.432628 GGGAGTGCGACGTCCTTG 60.433 66.667 10.58 0.00 32.90 3.61
95 96 2.432628 GGAGTGCGACGTCCTTGG 60.433 66.667 10.58 0.00 0.00 3.61
96 97 2.338984 GAGTGCGACGTCCTTGGT 59.661 61.111 10.58 0.00 0.00 3.67
97 98 1.733399 GAGTGCGACGTCCTTGGTC 60.733 63.158 10.58 0.00 0.00 4.02
98 99 2.028484 GTGCGACGTCCTTGGTCA 59.972 61.111 10.58 0.00 34.04 4.02
99 100 1.593209 GTGCGACGTCCTTGGTCAA 60.593 57.895 10.58 0.00 34.04 3.18
100 101 1.593209 TGCGACGTCCTTGGTCAAC 60.593 57.895 10.58 0.00 34.04 3.18
101 102 2.315386 GCGACGTCCTTGGTCAACC 61.315 63.158 10.58 0.00 34.04 3.77
102 103 1.666872 CGACGTCCTTGGTCAACCC 60.667 63.158 10.58 0.00 34.04 4.11
103 104 1.302271 GACGTCCTTGGTCAACCCC 60.302 63.158 3.51 0.00 34.56 4.95
104 105 2.358247 CGTCCTTGGTCAACCCCG 60.358 66.667 0.00 0.00 34.29 5.73
105 106 2.671963 GTCCTTGGTCAACCCCGC 60.672 66.667 0.00 0.00 34.29 6.13
106 107 3.961414 TCCTTGGTCAACCCCGCC 61.961 66.667 0.00 0.00 34.29 6.13
118 119 3.732892 CCCGCCGCGACAACAAAT 61.733 61.111 15.93 0.00 0.00 2.32
119 120 2.202298 CCGCCGCGACAACAAATC 60.202 61.111 15.93 0.00 0.00 2.17
120 121 2.570581 CGCCGCGACAACAAATCG 60.571 61.111 8.23 0.00 42.55 3.34
121 122 2.857448 GCCGCGACAACAAATCGA 59.143 55.556 8.23 0.00 42.25 3.59
122 123 1.509162 GCCGCGACAACAAATCGAC 60.509 57.895 8.23 0.00 42.25 4.20
123 124 1.225368 CCGCGACAACAAATCGACG 60.225 57.895 8.23 1.99 42.25 5.12
124 125 1.225368 CGCGACAACAAATCGACGG 60.225 57.895 0.00 0.00 42.25 4.79
125 126 1.610715 CGCGACAACAAATCGACGGA 61.611 55.000 0.00 0.00 42.25 4.69
146 147 3.428746 TGAAATGTTTCAACACGGTGG 57.571 42.857 13.48 0.00 43.62 4.61
150 151 1.098712 TGTTTCAACACGGTGGCTCC 61.099 55.000 13.48 0.00 33.17 4.70
154 155 1.669115 CAACACGGTGGCTCCTGAG 60.669 63.158 13.48 0.00 0.00 3.35
167 168 0.618968 TCCTGAGAAAGGCTCCTCCC 60.619 60.000 12.47 0.00 46.92 4.30
169 170 0.620121 CTGAGAAAGGCTCCTCCCCT 60.620 60.000 12.47 0.00 43.26 4.79
170 171 0.618968 TGAGAAAGGCTCCTCCCCTC 60.619 60.000 12.47 0.00 43.26 4.30
173 174 3.564347 AAAGGCTCCTCCCCTCCGT 62.564 63.158 0.00 0.00 34.51 4.69
386 393 1.454847 ACACAACGGCCACCACATT 60.455 52.632 2.24 0.00 0.00 2.71
390 397 2.032620 ACAACGGCCACCACATTAAAA 58.967 42.857 2.24 0.00 0.00 1.52
422 429 4.817063 CGCTGCCCGCAATCAACG 62.817 66.667 0.00 0.00 39.08 4.10
492 499 3.003173 TTCCTCGGCTCCCACAGG 61.003 66.667 0.00 0.00 0.00 4.00
545 555 4.456806 GGCACGGAAACACTCAGT 57.543 55.556 0.00 0.00 31.99 3.41
667 687 4.316823 AGGAGGGCACGTGGAGGA 62.317 66.667 18.88 0.00 0.00 3.71
673 693 2.737376 GCACGTGGAGGACCGTTC 60.737 66.667 18.88 0.00 39.42 3.95
674 694 2.732016 CACGTGGAGGACCGTTCA 59.268 61.111 7.95 0.00 39.42 3.18
780 812 6.484364 TGCATCCCTTTTCTTTTCTTTTCT 57.516 33.333 0.00 0.00 0.00 2.52
781 813 6.888105 TGCATCCCTTTTCTTTTCTTTTCTT 58.112 32.000 0.00 0.00 0.00 2.52
782 814 7.337938 TGCATCCCTTTTCTTTTCTTTTCTTT 58.662 30.769 0.00 0.00 0.00 2.52
783 815 7.828717 TGCATCCCTTTTCTTTTCTTTTCTTTT 59.171 29.630 0.00 0.00 0.00 2.27
784 816 8.677300 GCATCCCTTTTCTTTTCTTTTCTTTTT 58.323 29.630 0.00 0.00 0.00 1.94
828 860 1.421410 CCCTTTTCACGAGATCGGCG 61.421 60.000 0.00 0.00 44.95 6.46
849 881 2.025418 GAAAGCGACGGCGGAAAGA 61.025 57.895 15.06 0.00 46.35 2.52
856 888 4.162690 CGGCGGAAAGAGGGGGAG 62.163 72.222 0.00 0.00 0.00 4.30
858 890 3.009714 GCGGAAAGAGGGGGAGGT 61.010 66.667 0.00 0.00 0.00 3.85
859 891 2.990479 CGGAAAGAGGGGGAGGTG 59.010 66.667 0.00 0.00 0.00 4.00
860 892 2.677848 GGAAAGAGGGGGAGGTGC 59.322 66.667 0.00 0.00 0.00 5.01
862 894 3.330720 AAAGAGGGGGAGGTGCCG 61.331 66.667 0.00 0.00 37.63 5.69
988 1025 3.777910 CCCGATCCCGTCCCGTTT 61.778 66.667 0.00 0.00 0.00 3.60
1065 1102 1.675219 GCTGGGTTGAACCGGTAGA 59.325 57.895 8.00 0.00 39.83 2.59
1117 1162 0.596083 GTCTCATCTCATCGGCGGTG 60.596 60.000 15.31 15.31 0.00 4.94
1189 1246 3.917760 GAGGTCCGGCGATGGAGG 61.918 72.222 9.30 0.00 39.14 4.30
1293 1350 0.393077 ACAAGGTGAAGGTGGACGAG 59.607 55.000 0.00 0.00 0.00 4.18
1431 1491 3.436028 TAGTCCTAGGGCCGGCCT 61.436 66.667 42.70 30.10 36.10 5.19
1433 1493 4.176752 GTCCTAGGGCCGGCCTTG 62.177 72.222 42.70 30.21 36.10 3.61
1436 1496 4.554036 CTAGGGCCGGCCTTGCTC 62.554 72.222 42.70 26.86 36.10 4.26
1500 1560 3.303263 GCTCTCTCGTCGTGTATTAGGAC 60.303 52.174 0.00 0.00 40.04 3.85
1501 1561 3.201290 TCTCTCGTCGTGTATTAGGACC 58.799 50.000 0.00 0.00 40.26 4.46
1502 1562 3.118482 TCTCTCGTCGTGTATTAGGACCT 60.118 47.826 0.00 0.00 40.26 3.85
1503 1563 3.201290 TCTCGTCGTGTATTAGGACCTC 58.799 50.000 0.00 0.00 40.26 3.85
1504 1564 3.118482 TCTCGTCGTGTATTAGGACCTCT 60.118 47.826 0.00 0.00 40.26 3.69
1505 1565 3.614092 TCGTCGTGTATTAGGACCTCTT 58.386 45.455 0.00 0.00 40.26 2.85
1506 1566 4.012374 TCGTCGTGTATTAGGACCTCTTT 58.988 43.478 0.00 0.00 40.26 2.52
1507 1567 4.460382 TCGTCGTGTATTAGGACCTCTTTT 59.540 41.667 0.00 0.00 40.26 2.27
1508 1568 5.047802 TCGTCGTGTATTAGGACCTCTTTTT 60.048 40.000 0.00 0.00 40.26 1.94
1583 1648 3.640498 CAGAGGATCATCTTCTGCTGGTA 59.360 47.826 13.46 0.00 42.36 3.25
1591 1656 4.721776 TCATCTTCTGCTGGTAATTAGGGT 59.278 41.667 0.00 0.00 0.00 4.34
1595 1660 2.167693 TCTGCTGGTAATTAGGGTGTCG 59.832 50.000 0.00 0.00 0.00 4.35
1597 1662 2.303600 TGCTGGTAATTAGGGTGTCGTT 59.696 45.455 0.00 0.00 0.00 3.85
1613 1678 0.525668 CGTTCGTTCCCATCTCTCCG 60.526 60.000 0.00 0.00 0.00 4.63
1729 1794 6.364706 TGGTGCTGCGTTTTTATTTTATTCTG 59.635 34.615 0.00 0.00 0.00 3.02
1753 1821 3.814842 TCTATTTATGCCTGCGATTGTGG 59.185 43.478 0.00 0.00 0.00 4.17
1759 1827 0.881118 GCCTGCGATTGTGGAAAGAA 59.119 50.000 0.00 0.00 0.00 2.52
1805 1873 3.543680 TTAGAGTTCTGTGCTATGGGC 57.456 47.619 0.00 0.00 42.22 5.36
1822 1890 1.280421 GGGCCTGAAGATGTCAACTCT 59.720 52.381 0.84 0.00 35.22 3.24
1837 1905 7.004555 TGTCAACTCTTTCTTATCTTGCCTA 57.995 36.000 0.00 0.00 0.00 3.93
1882 2068 2.257353 GGCTCAACAATGCCGTTCT 58.743 52.632 0.00 0.00 39.71 3.01
1896 2082 2.333926 CCGTTCTGTTACGAGATTGCA 58.666 47.619 0.00 0.00 43.99 4.08
1911 2097 4.192317 AGATTGCAGATTACCCGAAGAAC 58.808 43.478 0.00 0.00 0.00 3.01
1912 2098 2.396590 TGCAGATTACCCGAAGAACC 57.603 50.000 0.00 0.00 0.00 3.62
1913 2099 1.287425 GCAGATTACCCGAAGAACCG 58.713 55.000 0.00 0.00 0.00 4.44
1923 2109 3.380479 CCGAAGAACCGGCTAATATGA 57.620 47.619 0.00 0.00 43.25 2.15
1924 2110 3.057734 CCGAAGAACCGGCTAATATGAC 58.942 50.000 0.00 0.00 43.25 3.06
1925 2111 3.491964 CCGAAGAACCGGCTAATATGACA 60.492 47.826 0.00 0.00 43.25 3.58
1926 2112 3.489785 CGAAGAACCGGCTAATATGACAC 59.510 47.826 0.00 0.00 0.00 3.67
1928 2114 4.481368 AGAACCGGCTAATATGACACAA 57.519 40.909 0.00 0.00 0.00 3.33
1929 2115 4.189231 AGAACCGGCTAATATGACACAAC 58.811 43.478 0.00 0.00 0.00 3.32
1930 2116 3.620427 ACCGGCTAATATGACACAACA 57.380 42.857 0.00 0.00 0.00 3.33
1932 2118 2.872245 CCGGCTAATATGACACAACAGG 59.128 50.000 0.00 0.00 0.00 4.00
1933 2119 3.431626 CCGGCTAATATGACACAACAGGA 60.432 47.826 0.00 0.00 0.00 3.86
1934 2120 4.380531 CGGCTAATATGACACAACAGGAT 58.619 43.478 0.00 0.00 0.00 3.24
1935 2121 4.816385 CGGCTAATATGACACAACAGGATT 59.184 41.667 0.00 0.00 0.00 3.01
1936 2122 5.989168 CGGCTAATATGACACAACAGGATTA 59.011 40.000 0.00 0.00 0.00 1.75
1937 2123 6.146184 CGGCTAATATGACACAACAGGATTAG 59.854 42.308 0.00 0.00 35.31 1.73
1939 2125 8.148351 GGCTAATATGACACAACAGGATTAGTA 58.852 37.037 0.00 0.00 35.02 1.82
1940 2126 9.712305 GCTAATATGACACAACAGGATTAGTAT 57.288 33.333 0.00 0.00 35.02 2.12
1947 2133 9.865321 TGACACAACAGGATTAGTATTTAGTAC 57.135 33.333 0.00 0.00 0.00 2.73
1950 2136 9.530633 CACAACAGGATTAGTATTTAGTACTCC 57.469 37.037 0.00 0.00 42.63 3.85
1951 2137 8.702819 ACAACAGGATTAGTATTTAGTACTCCC 58.297 37.037 0.00 0.00 42.63 4.30
1952 2138 8.925338 CAACAGGATTAGTATTTAGTACTCCCT 58.075 37.037 0.00 0.00 42.63 4.20
1953 2139 8.709272 ACAGGATTAGTATTTAGTACTCCCTC 57.291 38.462 0.00 0.00 42.63 4.30
1954 2140 7.729431 ACAGGATTAGTATTTAGTACTCCCTCC 59.271 40.741 0.00 0.00 42.63 4.30
1955 2141 6.947158 AGGATTAGTATTTAGTACTCCCTCCG 59.053 42.308 0.00 0.00 42.63 4.63
1956 2142 6.718912 GGATTAGTATTTAGTACTCCCTCCGT 59.281 42.308 0.00 0.00 42.63 4.69
1957 2143 7.232330 GGATTAGTATTTAGTACTCCCTCCGTT 59.768 40.741 0.00 0.00 42.63 4.44
1958 2144 7.961326 TTAGTATTTAGTACTCCCTCCGTTT 57.039 36.000 0.00 0.00 42.63 3.60
1959 2145 6.218108 AGTATTTAGTACTCCCTCCGTTTG 57.782 41.667 0.00 0.00 39.46 2.93
1960 2146 3.967332 TTTAGTACTCCCTCCGTTTGG 57.033 47.619 0.00 0.00 0.00 3.28
1961 2147 2.905415 TAGTACTCCCTCCGTTTGGA 57.095 50.000 0.00 0.00 43.88 3.53
1962 2148 2.019807 AGTACTCCCTCCGTTTGGAA 57.980 50.000 0.00 0.00 45.87 3.53
1963 2149 2.547990 AGTACTCCCTCCGTTTGGAAT 58.452 47.619 0.00 0.00 45.87 3.01
1964 2150 2.910977 AGTACTCCCTCCGTTTGGAATT 59.089 45.455 0.00 0.00 45.87 2.17
1965 2151 4.098894 AGTACTCCCTCCGTTTGGAATTA 58.901 43.478 0.00 0.00 45.87 1.40
1966 2152 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
1967 2153 2.910977 ACTCCCTCCGTTTGGAATTACT 59.089 45.455 0.00 0.00 45.87 2.24
1968 2154 3.329814 ACTCCCTCCGTTTGGAATTACTT 59.670 43.478 0.00 0.00 45.87 2.24
1969 2155 3.681593 TCCCTCCGTTTGGAATTACTTG 58.318 45.455 0.00 0.00 45.87 3.16
1970 2156 3.073356 TCCCTCCGTTTGGAATTACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
1971 2157 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
1972 2158 4.069304 CCTCCGTTTGGAATTACTTGTCA 58.931 43.478 0.00 0.00 45.87 3.58
1973 2159 4.083484 CCTCCGTTTGGAATTACTTGTCAC 60.083 45.833 0.00 0.00 45.87 3.67
1974 2160 4.452825 TCCGTTTGGAATTACTTGTCACA 58.547 39.130 0.00 0.00 42.85 3.58
1975 2161 4.882427 TCCGTTTGGAATTACTTGTCACAA 59.118 37.500 0.00 0.00 42.85 3.33
1976 2162 5.357314 TCCGTTTGGAATTACTTGTCACAAA 59.643 36.000 0.00 0.00 42.85 2.83
1977 2163 6.037098 CCGTTTGGAATTACTTGTCACAAAA 58.963 36.000 0.00 0.00 37.49 2.44
1978 2164 6.531948 CCGTTTGGAATTACTTGTCACAAAAA 59.468 34.615 0.00 0.00 37.49 1.94
1979 2165 7.223777 CCGTTTGGAATTACTTGTCACAAAAAT 59.776 33.333 0.00 0.00 37.49 1.82
1980 2166 8.055402 CGTTTGGAATTACTTGTCACAAAAATG 58.945 33.333 0.00 0.00 0.00 2.32
1981 2167 8.334632 GTTTGGAATTACTTGTCACAAAAATGG 58.665 33.333 0.00 0.00 0.00 3.16
1982 2168 7.353414 TGGAATTACTTGTCACAAAAATGGA 57.647 32.000 0.00 0.00 0.00 3.41
1983 2169 7.961351 TGGAATTACTTGTCACAAAAATGGAT 58.039 30.769 0.00 0.00 0.00 3.41
1984 2170 7.871973 TGGAATTACTTGTCACAAAAATGGATG 59.128 33.333 0.00 0.00 0.00 3.51
1985 2171 7.872483 GGAATTACTTGTCACAAAAATGGATGT 59.128 33.333 0.00 0.00 0.00 3.06
1986 2172 9.906660 GAATTACTTGTCACAAAAATGGATGTA 57.093 29.630 0.00 0.00 0.00 2.29
1989 2175 7.765695 ACTTGTCACAAAAATGGATGTATCT 57.234 32.000 0.00 0.00 0.00 1.98
1990 2176 8.862325 ACTTGTCACAAAAATGGATGTATCTA 57.138 30.769 0.00 0.00 0.00 1.98
1991 2177 8.730680 ACTTGTCACAAAAATGGATGTATCTAC 58.269 33.333 0.00 0.00 0.00 2.59
1992 2178 8.628630 TTGTCACAAAAATGGATGTATCTACA 57.371 30.769 0.00 0.00 40.98 2.74
1993 2179 8.628630 TGTCACAAAAATGGATGTATCTACAA 57.371 30.769 0.00 0.00 39.99 2.41
1994 2180 8.511321 TGTCACAAAAATGGATGTATCTACAAC 58.489 33.333 0.00 0.00 39.99 3.32
1995 2181 8.730680 GTCACAAAAATGGATGTATCTACAACT 58.269 33.333 0.00 0.00 39.99 3.16
1996 2182 9.952030 TCACAAAAATGGATGTATCTACAACTA 57.048 29.630 0.00 0.00 39.99 2.24
2027 2213 9.469807 ACATCTAGATACATTCATTTCTTCGAC 57.530 33.333 4.54 0.00 0.00 4.20
2028 2214 8.634265 CATCTAGATACATTCATTTCTTCGACG 58.366 37.037 4.54 0.00 0.00 5.12
2029 2215 7.927048 TCTAGATACATTCATTTCTTCGACGA 58.073 34.615 0.00 0.00 0.00 4.20
2030 2216 8.070769 TCTAGATACATTCATTTCTTCGACGAG 58.929 37.037 0.00 0.00 0.00 4.18
2031 2217 6.565234 AGATACATTCATTTCTTCGACGAGT 58.435 36.000 0.00 0.00 0.00 4.18
2032 2218 7.704271 AGATACATTCATTTCTTCGACGAGTA 58.296 34.615 0.00 0.00 0.00 2.59
2033 2219 8.188799 AGATACATTCATTTCTTCGACGAGTAA 58.811 33.333 0.00 0.00 0.00 2.24
2034 2220 6.390987 ACATTCATTTCTTCGACGAGTAAC 57.609 37.500 0.00 0.00 0.00 2.50
2035 2221 6.157211 ACATTCATTTCTTCGACGAGTAACT 58.843 36.000 0.00 0.00 0.00 2.24
2036 2222 6.645415 ACATTCATTTCTTCGACGAGTAACTT 59.355 34.615 0.00 0.00 0.00 2.66
2037 2223 6.686130 TTCATTTCTTCGACGAGTAACTTC 57.314 37.500 0.00 0.00 0.00 3.01
2038 2224 4.849926 TCATTTCTTCGACGAGTAACTTCG 59.150 41.667 0.00 0.00 45.70 3.79
2039 2225 4.472691 TTTCTTCGACGAGTAACTTCGA 57.527 40.909 0.00 1.09 45.01 3.71
2040 2226 3.446184 TCTTCGACGAGTAACTTCGAC 57.554 47.619 0.00 0.00 45.99 4.20
2044 2230 2.871263 GACGAGTAACTTCGACGAGT 57.129 50.000 0.00 0.00 43.03 4.18
2045 2231 3.980238 GACGAGTAACTTCGACGAGTA 57.020 47.619 0.00 0.00 43.03 2.59
2046 2232 4.313522 GACGAGTAACTTCGACGAGTAA 57.686 45.455 0.00 0.00 43.03 2.24
2047 2233 4.891516 GACGAGTAACTTCGACGAGTAAT 58.108 43.478 0.00 0.00 43.03 1.89
2048 2234 5.288543 ACGAGTAACTTCGACGAGTAATT 57.711 39.130 0.00 0.00 43.03 1.40
2049 2235 5.319931 ACGAGTAACTTCGACGAGTAATTC 58.680 41.667 0.00 0.00 43.03 2.17
2050 2236 4.727655 CGAGTAACTTCGACGAGTAATTCC 59.272 45.833 0.00 0.00 43.03 3.01
2051 2237 4.656041 AGTAACTTCGACGAGTAATTCCG 58.344 43.478 0.00 0.00 0.00 4.30
2052 2238 3.837213 AACTTCGACGAGTAATTCCGA 57.163 42.857 0.00 0.00 0.00 4.55
2053 2239 3.837213 ACTTCGACGAGTAATTCCGAA 57.163 42.857 0.00 0.00 37.61 4.30
2054 2240 3.496155 ACTTCGACGAGTAATTCCGAAC 58.504 45.455 0.00 0.00 35.71 3.95
2055 2241 3.058016 ACTTCGACGAGTAATTCCGAACA 60.058 43.478 0.00 0.00 35.71 3.18
2056 2242 3.127081 TCGACGAGTAATTCCGAACAG 57.873 47.619 0.00 0.00 0.00 3.16
2057 2243 2.743664 TCGACGAGTAATTCCGAACAGA 59.256 45.455 0.00 0.00 0.00 3.41
2058 2244 3.099362 CGACGAGTAATTCCGAACAGAG 58.901 50.000 0.00 0.00 0.00 3.35
2059 2245 3.436496 GACGAGTAATTCCGAACAGAGG 58.564 50.000 0.00 0.00 0.00 3.69
2060 2246 2.165845 ACGAGTAATTCCGAACAGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
2074 2260 4.868314 ACAGAGGGAGTACAACTTACAC 57.132 45.455 0.00 0.00 0.00 2.90
2094 2280 5.772521 ACACTTCTTTGTACATTCATTGCC 58.227 37.500 0.00 0.00 0.00 4.52
2114 2300 2.417719 CCAGAGACTGGTTGCAGTAAC 58.582 52.381 9.36 0.00 45.82 2.50
2118 2304 5.105752 CAGAGACTGGTTGCAGTAACTATC 58.894 45.833 1.05 0.00 39.31 2.08
2126 2312 4.130118 GTTGCAGTAACTATCCCAGGATG 58.870 47.826 9.54 2.51 36.34 3.51
2135 2321 9.398921 AGTAACTATCCCAGGATGATTTAAGAT 57.601 33.333 9.54 0.00 39.69 2.40
2138 2324 7.841956 ACTATCCCAGGATGATTTAAGATACG 58.158 38.462 9.54 0.00 39.69 3.06
2148 2334 7.148507 GGATGATTTAAGATACGCCTTGATCTG 60.149 40.741 0.00 0.00 32.66 2.90
2165 2351 7.285629 CCTTGATCTGATACTAACACAGGAGTA 59.714 40.741 0.00 0.00 32.86 2.59
2172 2358 7.544622 TGATACTAACACAGGAGTAACATGTC 58.455 38.462 0.00 0.00 41.71 3.06
2192 2378 3.991773 GTCACATGTGTAAAACGCCTCTA 59.008 43.478 24.63 0.00 0.00 2.43
2196 2382 7.011109 GTCACATGTGTAAAACGCCTCTAATAT 59.989 37.037 24.63 0.00 0.00 1.28
2197 2383 7.551262 TCACATGTGTAAAACGCCTCTAATATT 59.449 33.333 24.63 0.00 0.00 1.28
2199 2385 7.551262 ACATGTGTAAAACGCCTCTAATATTCA 59.449 33.333 0.00 0.00 0.00 2.57
2205 2391 9.209175 GTAAAACGCCTCTAATATTCAGATCAT 57.791 33.333 0.00 0.00 0.00 2.45
2216 2402 9.258826 CTAATATTCAGATCATGCAGGCTATAC 57.741 37.037 0.00 0.00 0.00 1.47
2220 2406 6.218108 TCAGATCATGCAGGCTATACATAG 57.782 41.667 0.00 0.00 0.00 2.23
2221 2407 5.718607 TCAGATCATGCAGGCTATACATAGT 59.281 40.000 0.00 0.00 32.96 2.12
2224 2410 5.806654 TCATGCAGGCTATACATAGTCAA 57.193 39.130 3.82 0.00 37.45 3.18
2226 2412 6.772605 TCATGCAGGCTATACATAGTCAATT 58.227 36.000 3.82 0.00 37.45 2.32
2227 2413 6.875726 TCATGCAGGCTATACATAGTCAATTC 59.124 38.462 3.82 0.00 37.45 2.17
2228 2414 6.425210 TGCAGGCTATACATAGTCAATTCT 57.575 37.500 3.82 0.00 37.45 2.40
2229 2415 7.539034 TGCAGGCTATACATAGTCAATTCTA 57.461 36.000 3.82 0.00 37.45 2.10
2230 2416 7.378966 TGCAGGCTATACATAGTCAATTCTAC 58.621 38.462 3.82 0.00 37.45 2.59
2231 2417 7.233553 TGCAGGCTATACATAGTCAATTCTACT 59.766 37.037 3.82 0.00 37.45 2.57
2232 2418 8.740906 GCAGGCTATACATAGTCAATTCTACTA 58.259 37.037 3.82 0.79 37.45 1.82
2241 2427 8.314751 ACATAGTCAATTCTACTAGTTGCTTGT 58.685 33.333 0.00 1.09 33.15 3.16
2242 2428 8.812329 CATAGTCAATTCTACTAGTTGCTTGTC 58.188 37.037 0.00 4.95 33.15 3.18
2243 2429 6.759272 AGTCAATTCTACTAGTTGCTTGTCA 58.241 36.000 0.00 0.00 0.00 3.58
2245 2431 7.715249 AGTCAATTCTACTAGTTGCTTGTCAAA 59.285 33.333 0.00 0.00 36.26 2.69
2246 2432 7.798982 GTCAATTCTACTAGTTGCTTGTCAAAC 59.201 37.037 0.00 0.00 36.26 2.93
2252 2439 6.560253 ACTAGTTGCTTGTCAAACAATAGG 57.440 37.500 4.78 1.86 37.48 2.57
2261 2448 3.513515 TGTCAAACAATAGGGGAAATGGC 59.486 43.478 0.00 0.00 0.00 4.40
2262 2449 3.513515 GTCAAACAATAGGGGAAATGGCA 59.486 43.478 0.00 0.00 0.00 4.92
2276 2463 5.409520 GGGAAATGGCAAAAGATCAAAACTC 59.590 40.000 0.00 0.00 0.00 3.01
2283 2470 4.859245 GCAAAAGATCAAAACTCGGGATTC 59.141 41.667 0.00 0.00 0.00 2.52
2286 2473 6.442513 AAAGATCAAAACTCGGGATTCATC 57.557 37.500 0.00 0.00 0.00 2.92
2287 2474 4.455606 AGATCAAAACTCGGGATTCATCC 58.544 43.478 0.00 0.00 46.41 3.51
2288 2475 4.164988 AGATCAAAACTCGGGATTCATCCT 59.835 41.667 5.80 0.00 46.35 3.24
2290 2477 5.429681 TCAAAACTCGGGATTCATCCTTA 57.570 39.130 5.80 0.00 46.35 2.69
2291 2478 6.001449 TCAAAACTCGGGATTCATCCTTAT 57.999 37.500 5.80 0.00 46.35 1.73
2292 2479 7.131907 TCAAAACTCGGGATTCATCCTTATA 57.868 36.000 5.80 0.00 46.35 0.98
2324 2511 9.605275 TCCAGTAATCATCAAACAGAAAGATAG 57.395 33.333 0.00 0.00 0.00 2.08
2325 2512 9.388506 CCAGTAATCATCAAACAGAAAGATAGT 57.611 33.333 0.00 0.00 0.00 2.12
2333 2520 9.552114 CATCAAACAGAAAGATAGTTGATTGTC 57.448 33.333 0.00 0.00 0.00 3.18
2334 2521 7.796838 TCAAACAGAAAGATAGTTGATTGTCG 58.203 34.615 0.00 0.00 0.00 4.35
2338 2528 8.378172 ACAGAAAGATAGTTGATTGTCGAAAA 57.622 30.769 0.00 0.00 0.00 2.29
2353 2543 7.504924 TTGTCGAAAAGGAGTTATCACAAAT 57.495 32.000 0.00 0.00 0.00 2.32
2358 2548 9.058174 TCGAAAAGGAGTTATCACAAATTGTTA 57.942 29.630 0.00 0.00 0.00 2.41
2382 2572 4.591072 ACATCCTAGGCAGTAGATTTCTCC 59.409 45.833 2.96 0.00 0.00 3.71
2388 2578 2.223852 GGCAGTAGATTTCTCCGGAGAC 60.224 54.545 33.75 21.88 37.14 3.36
2393 2583 0.173708 GATTTCTCCGGAGACAGCGT 59.826 55.000 33.75 17.04 37.14 5.07
2415 2605 5.683743 CGTCTTGATTCTCCGACTAAGATTC 59.316 44.000 0.00 0.00 0.00 2.52
2475 2665 4.201523 TGGACGGCCAGTTGAGTA 57.798 55.556 5.41 0.00 39.92 2.59
2535 2725 4.042809 TCCATTATCTTGGTGTGGAAGTGT 59.957 41.667 0.00 0.00 36.12 3.55
2598 2788 3.459063 GCTTCGACGGTAGGGCCT 61.459 66.667 12.58 12.58 34.25 5.19
2610 2800 2.120312 GTAGGGCCTAGAGGAGCTTTT 58.880 52.381 15.05 0.00 37.39 2.27
2612 2802 0.749818 GGGCCTAGAGGAGCTTTTGC 60.750 60.000 0.84 0.00 39.97 3.68
2633 2823 2.742774 GCCAAGCGACATCAAAGTTTT 58.257 42.857 0.00 0.00 0.00 2.43
2652 2842 1.262417 TCAGATCGTGCTTACCCACA 58.738 50.000 0.00 0.00 35.47 4.17
2654 2844 0.108138 AGATCGTGCTTACCCACAGC 60.108 55.000 0.00 0.00 35.47 4.40
2655 2845 1.078426 ATCGTGCTTACCCACAGCC 60.078 57.895 0.00 0.00 36.33 4.85
2658 2848 1.679898 GTGCTTACCCACAGCCTCT 59.320 57.895 0.00 0.00 36.33 3.69
2682 2872 0.165511 CAGCTGCAAGAAGAACTCGC 59.834 55.000 0.00 0.00 34.07 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.369576 GGAAAGGAAACAGAGGCTATCGT 60.370 47.826 0.00 0.00 0.00 3.73
1 2 3.198872 GGAAAGGAAACAGAGGCTATCG 58.801 50.000 0.00 0.00 0.00 2.92
2 3 3.546724 GGGAAAGGAAACAGAGGCTATC 58.453 50.000 0.00 0.00 0.00 2.08
3 4 2.242452 GGGGAAAGGAAACAGAGGCTAT 59.758 50.000 0.00 0.00 0.00 2.97
4 5 1.633945 GGGGAAAGGAAACAGAGGCTA 59.366 52.381 0.00 0.00 0.00 3.93
5 6 0.405973 GGGGAAAGGAAACAGAGGCT 59.594 55.000 0.00 0.00 0.00 4.58
6 7 0.612174 GGGGGAAAGGAAACAGAGGC 60.612 60.000 0.00 0.00 0.00 4.70
7 8 0.322546 CGGGGGAAAGGAAACAGAGG 60.323 60.000 0.00 0.00 0.00 3.69
8 9 0.322546 CCGGGGGAAAGGAAACAGAG 60.323 60.000 0.00 0.00 0.00 3.35
9 10 0.768997 TCCGGGGGAAAGGAAACAGA 60.769 55.000 0.00 0.00 32.86 3.41
10 11 0.331616 ATCCGGGGGAAAGGAAACAG 59.668 55.000 0.00 0.00 40.32 3.16
11 12 0.781278 AATCCGGGGGAAAGGAAACA 59.219 50.000 0.00 0.00 40.32 2.83
12 13 1.182667 CAATCCGGGGGAAAGGAAAC 58.817 55.000 0.00 0.00 40.32 2.78
13 14 0.613572 GCAATCCGGGGGAAAGGAAA 60.614 55.000 0.00 0.00 40.32 3.13
14 15 1.000145 GCAATCCGGGGGAAAGGAA 60.000 57.895 0.00 0.00 40.32 3.36
15 16 0.622154 TAGCAATCCGGGGGAAAGGA 60.622 55.000 0.00 0.00 41.30 3.36
16 17 0.179018 CTAGCAATCCGGGGGAAAGG 60.179 60.000 0.00 0.00 34.34 3.11
17 18 0.819666 GCTAGCAATCCGGGGGAAAG 60.820 60.000 10.63 0.00 34.34 2.62
18 19 1.226262 GCTAGCAATCCGGGGGAAA 59.774 57.895 10.63 0.00 34.34 3.13
19 20 2.752807 GGCTAGCAATCCGGGGGAA 61.753 63.158 18.24 0.00 34.34 3.97
20 21 3.168528 GGCTAGCAATCCGGGGGA 61.169 66.667 18.24 0.00 35.55 4.81
21 22 3.482232 CTGGCTAGCAATCCGGGGG 62.482 68.421 18.24 0.00 0.00 5.40
22 23 2.111878 CTGGCTAGCAATCCGGGG 59.888 66.667 18.24 0.00 0.00 5.73
31 32 3.198489 GCAGTTCCGCTGGCTAGC 61.198 66.667 12.81 12.81 45.14 3.42
32 33 2.887568 CGCAGTTCCGCTGGCTAG 60.888 66.667 0.00 0.00 45.14 3.42
33 34 3.378602 TCGCAGTTCCGCTGGCTA 61.379 61.111 0.00 0.00 45.14 3.93
36 37 1.080093 TAAGTCGCAGTTCCGCTGG 60.080 57.895 0.00 0.00 45.14 4.85
38 39 1.132643 CTAGTAAGTCGCAGTTCCGCT 59.867 52.381 0.00 0.00 0.00 5.52
39 40 1.131883 TCTAGTAAGTCGCAGTTCCGC 59.868 52.381 0.00 0.00 0.00 5.54
40 41 3.427243 CTTCTAGTAAGTCGCAGTTCCG 58.573 50.000 0.00 0.00 0.00 4.30
41 42 3.180613 GCTTCTAGTAAGTCGCAGTTCC 58.819 50.000 0.00 0.00 0.00 3.62
42 43 2.847133 CGCTTCTAGTAAGTCGCAGTTC 59.153 50.000 0.00 0.00 0.00 3.01
43 44 2.228343 ACGCTTCTAGTAAGTCGCAGTT 59.772 45.455 13.17 0.00 0.00 3.16
44 45 1.811359 ACGCTTCTAGTAAGTCGCAGT 59.189 47.619 13.17 0.00 0.00 4.40
45 46 2.096174 AGACGCTTCTAGTAAGTCGCAG 59.904 50.000 0.00 0.00 36.97 5.18
46 47 2.082231 AGACGCTTCTAGTAAGTCGCA 58.918 47.619 0.00 0.00 36.97 5.10
47 48 2.095532 TCAGACGCTTCTAGTAAGTCGC 59.904 50.000 0.00 0.00 36.97 5.19
48 49 4.539509 ATCAGACGCTTCTAGTAAGTCG 57.460 45.455 0.00 12.38 36.97 4.18
49 50 6.126568 AGAATCAGACGCTTCTAGTAAGTC 57.873 41.667 0.00 0.00 30.08 3.01
50 51 7.415429 GGTTAGAATCAGACGCTTCTAGTAAGT 60.415 40.741 0.00 0.00 35.86 2.24
51 52 6.913673 GGTTAGAATCAGACGCTTCTAGTAAG 59.086 42.308 0.00 0.00 35.86 2.34
52 53 6.457934 CGGTTAGAATCAGACGCTTCTAGTAA 60.458 42.308 0.00 0.00 35.86 2.24
53 54 5.007430 CGGTTAGAATCAGACGCTTCTAGTA 59.993 44.000 0.00 0.00 35.86 1.82
54 55 4.201930 CGGTTAGAATCAGACGCTTCTAGT 60.202 45.833 0.00 0.00 35.86 2.57
55 56 4.283678 CGGTTAGAATCAGACGCTTCTAG 58.716 47.826 0.00 0.00 35.86 2.43
56 57 3.066342 CCGGTTAGAATCAGACGCTTCTA 59.934 47.826 0.00 0.00 33.83 2.10
57 58 2.159226 CCGGTTAGAATCAGACGCTTCT 60.159 50.000 0.00 0.00 35.88 2.85
58 59 2.194271 CCGGTTAGAATCAGACGCTTC 58.806 52.381 0.00 0.00 0.00 3.86
59 60 1.134788 CCCGGTTAGAATCAGACGCTT 60.135 52.381 0.00 0.00 0.00 4.68
60 61 0.460311 CCCGGTTAGAATCAGACGCT 59.540 55.000 0.00 0.00 0.00 5.07
61 62 0.458669 TCCCGGTTAGAATCAGACGC 59.541 55.000 0.00 0.00 0.00 5.19
62 63 1.749634 ACTCCCGGTTAGAATCAGACG 59.250 52.381 0.00 0.00 0.00 4.18
63 64 2.738964 GCACTCCCGGTTAGAATCAGAC 60.739 54.545 0.00 0.00 0.00 3.51
64 65 1.480954 GCACTCCCGGTTAGAATCAGA 59.519 52.381 0.00 0.00 0.00 3.27
65 66 1.802880 CGCACTCCCGGTTAGAATCAG 60.803 57.143 0.00 0.00 0.00 2.90
66 67 0.174845 CGCACTCCCGGTTAGAATCA 59.825 55.000 0.00 0.00 0.00 2.57
67 68 0.458669 TCGCACTCCCGGTTAGAATC 59.541 55.000 0.00 0.00 0.00 2.52
68 69 0.175073 GTCGCACTCCCGGTTAGAAT 59.825 55.000 0.00 0.00 0.00 2.40
69 70 1.588082 GTCGCACTCCCGGTTAGAA 59.412 57.895 0.00 0.00 0.00 2.10
70 71 2.693762 CGTCGCACTCCCGGTTAGA 61.694 63.158 0.00 0.00 0.00 2.10
71 72 2.202570 CGTCGCACTCCCGGTTAG 60.203 66.667 0.00 0.00 0.00 2.34
72 73 2.981560 GACGTCGCACTCCCGGTTA 61.982 63.158 0.00 0.00 0.00 2.85
73 74 4.353437 GACGTCGCACTCCCGGTT 62.353 66.667 0.00 0.00 0.00 4.44
76 77 4.052229 AAGGACGTCGCACTCCCG 62.052 66.667 9.92 0.00 0.00 5.14
77 78 2.432628 CAAGGACGTCGCACTCCC 60.433 66.667 9.92 0.00 0.00 4.30
78 79 2.432628 CCAAGGACGTCGCACTCC 60.433 66.667 9.92 0.00 0.00 3.85
79 80 1.733399 GACCAAGGACGTCGCACTC 60.733 63.158 9.92 0.00 0.00 3.51
80 81 2.023414 TTGACCAAGGACGTCGCACT 62.023 55.000 9.92 0.00 32.68 4.40
81 82 1.593209 TTGACCAAGGACGTCGCAC 60.593 57.895 9.92 0.00 32.68 5.34
82 83 1.593209 GTTGACCAAGGACGTCGCA 60.593 57.895 9.92 0.00 32.68 5.10
83 84 2.315386 GGTTGACCAAGGACGTCGC 61.315 63.158 9.92 2.53 35.64 5.19
84 85 1.666872 GGGTTGACCAAGGACGTCG 60.667 63.158 9.92 0.00 39.85 5.12
85 86 1.302271 GGGGTTGACCAAGGACGTC 60.302 63.158 7.13 7.13 42.91 4.34
86 87 2.833957 GGGGTTGACCAAGGACGT 59.166 61.111 2.12 0.00 42.91 4.34
87 88 2.358247 CGGGGTTGACCAAGGACG 60.358 66.667 2.12 0.00 42.91 4.79
88 89 2.671963 GCGGGGTTGACCAAGGAC 60.672 66.667 2.12 0.00 42.91 3.85
89 90 3.961414 GGCGGGGTTGACCAAGGA 61.961 66.667 2.12 0.00 42.91 3.36
101 102 3.661025 GATTTGTTGTCGCGGCGGG 62.661 63.158 23.46 18.68 0.00 6.13
102 103 2.202298 GATTTGTTGTCGCGGCGG 60.202 61.111 23.46 3.89 0.00 6.13
103 104 2.570581 CGATTTGTTGTCGCGGCG 60.571 61.111 17.70 17.70 31.85 6.46
104 105 1.509162 GTCGATTTGTTGTCGCGGC 60.509 57.895 2.29 2.29 38.88 6.53
105 106 1.225368 CGTCGATTTGTTGTCGCGG 60.225 57.895 6.13 0.00 38.88 6.46
106 107 1.225368 CCGTCGATTTGTTGTCGCG 60.225 57.895 0.00 0.00 38.88 5.87
107 108 0.719465 ATCCGTCGATTTGTTGTCGC 59.281 50.000 0.00 0.00 38.88 5.19
108 109 1.989864 TCATCCGTCGATTTGTTGTCG 59.010 47.619 0.00 0.00 40.30 4.35
109 110 4.398549 TTTCATCCGTCGATTTGTTGTC 57.601 40.909 0.00 0.00 0.00 3.18
110 111 4.215399 ACATTTCATCCGTCGATTTGTTGT 59.785 37.500 0.00 0.00 0.00 3.32
111 112 4.722194 ACATTTCATCCGTCGATTTGTTG 58.278 39.130 0.00 0.00 0.00 3.33
112 113 5.371115 AACATTTCATCCGTCGATTTGTT 57.629 34.783 0.00 0.00 0.00 2.83
113 114 5.049060 TGAAACATTTCATCCGTCGATTTGT 60.049 36.000 2.89 0.00 41.88 2.83
114 115 5.389778 TGAAACATTTCATCCGTCGATTTG 58.610 37.500 2.89 0.00 41.88 2.32
115 116 5.621197 TGAAACATTTCATCCGTCGATTT 57.379 34.783 2.89 0.00 41.88 2.17
116 117 5.049060 TGTTGAAACATTTCATCCGTCGATT 60.049 36.000 7.83 0.00 45.65 3.34
117 118 4.454161 TGTTGAAACATTTCATCCGTCGAT 59.546 37.500 7.83 0.00 45.65 3.59
118 119 3.810386 TGTTGAAACATTTCATCCGTCGA 59.190 39.130 7.83 0.00 45.65 4.20
119 120 3.906008 GTGTTGAAACATTTCATCCGTCG 59.094 43.478 7.83 0.00 45.65 5.12
120 121 3.906008 CGTGTTGAAACATTTCATCCGTC 59.094 43.478 7.83 1.80 45.65 4.79
121 122 3.304391 CCGTGTTGAAACATTTCATCCGT 60.304 43.478 7.83 0.00 45.65 4.69
122 123 3.233578 CCGTGTTGAAACATTTCATCCG 58.766 45.455 7.83 11.48 45.65 4.18
123 124 3.980775 CACCGTGTTGAAACATTTCATCC 59.019 43.478 7.83 3.40 45.65 3.51
124 125 3.980775 CCACCGTGTTGAAACATTTCATC 59.019 43.478 7.83 7.94 45.65 2.92
125 126 3.798548 GCCACCGTGTTGAAACATTTCAT 60.799 43.478 7.83 0.00 45.65 2.57
150 151 0.620121 AGGGGAGGAGCCTTTCTCAG 60.620 60.000 0.00 0.00 43.70 3.35
154 155 2.736826 CGGAGGGGAGGAGCCTTTC 61.737 68.421 0.00 0.00 36.66 2.62
173 174 4.927782 GGACAGGTGTGCGTGCCA 62.928 66.667 0.00 0.00 34.13 4.92
386 393 1.788308 CGAAAGGACGCGTCAGTTTTA 59.212 47.619 37.26 0.00 0.00 1.52
492 499 2.899838 TCAGTTGTGCGTGTGGGC 60.900 61.111 0.00 0.00 0.00 5.36
538 548 2.606308 GCTGTGCAAATCCAACTGAGTG 60.606 50.000 0.00 0.00 0.00 3.51
544 554 6.544038 AAAAATAAGCTGTGCAAATCCAAC 57.456 33.333 0.00 0.00 0.00 3.77
545 555 7.665690 TCTAAAAATAAGCTGTGCAAATCCAA 58.334 30.769 0.00 0.00 0.00 3.53
605 621 5.431420 TTTTTATTGTTGCTTCAGCTCGA 57.569 34.783 0.00 0.00 42.66 4.04
782 814 9.825109 ATGCATATCATGTCAATCAATCAAAAA 57.175 25.926 0.00 0.00 33.26 1.94
783 815 9.471084 GATGCATATCATGTCAATCAATCAAAA 57.529 29.630 0.00 0.00 35.05 2.44
784 816 8.085909 GGATGCATATCATGTCAATCAATCAAA 58.914 33.333 0.00 0.00 35.05 2.69
785 817 7.309560 GGGATGCATATCATGTCAATCAATCAA 60.310 37.037 0.00 0.00 35.05 2.57
786 818 6.152154 GGGATGCATATCATGTCAATCAATCA 59.848 38.462 0.00 0.00 35.05 2.57
787 819 6.377429 AGGGATGCATATCATGTCAATCAATC 59.623 38.462 0.00 0.00 35.05 2.67
788 820 6.253758 AGGGATGCATATCATGTCAATCAAT 58.746 36.000 0.00 0.00 35.05 2.57
789 821 5.637127 AGGGATGCATATCATGTCAATCAA 58.363 37.500 0.00 0.00 35.05 2.57
790 822 5.251182 AGGGATGCATATCATGTCAATCA 57.749 39.130 0.00 0.00 35.05 2.57
791 823 6.585695 AAAGGGATGCATATCATGTCAATC 57.414 37.500 0.00 0.00 35.05 2.67
792 824 6.551975 TGAAAAGGGATGCATATCATGTCAAT 59.448 34.615 0.00 0.00 35.05 2.57
793 825 5.892686 TGAAAAGGGATGCATATCATGTCAA 59.107 36.000 0.00 0.00 35.05 3.18
807 839 1.473434 GCCGATCTCGTGAAAAGGGAT 60.473 52.381 0.00 0.00 37.74 3.85
828 860 1.562575 TTTCCGCCGTCGCTTTCTTC 61.563 55.000 0.00 0.00 0.00 2.87
988 1025 2.263227 CCACGTATGGCGGTGTGA 59.737 61.111 0.00 0.00 46.52 3.58
1087 1125 1.595794 GAGATGAGACGAGACGAGACC 59.404 57.143 0.00 0.00 0.00 3.85
1088 1126 2.272678 TGAGATGAGACGAGACGAGAC 58.727 52.381 0.00 0.00 0.00 3.36
1117 1162 1.579626 GATGACGACGACGACGACC 60.580 63.158 25.15 15.92 42.66 4.79
1227 1284 3.797507 CTGGCTGTGCACCACCCTT 62.798 63.158 15.69 0.00 32.73 3.95
1228 1285 4.275508 CTGGCTGTGCACCACCCT 62.276 66.667 15.69 0.00 32.73 4.34
1293 1350 2.048222 TGCTGCTGCTGGTACGTC 60.048 61.111 17.00 0.00 40.48 4.34
1389 1449 4.996434 CCGCCGATGGAGATGGCC 62.996 72.222 0.00 0.00 46.12 5.36
1443 1503 1.030488 CGACGACCCAGCTAGAAGGA 61.030 60.000 0.00 0.00 0.00 3.36
1444 1504 1.313812 ACGACGACCCAGCTAGAAGG 61.314 60.000 0.00 0.00 0.00 3.46
1445 1505 0.099082 GACGACGACCCAGCTAGAAG 59.901 60.000 0.00 0.00 0.00 2.85
1508 1568 9.860898 CAAAGAAAGAGAGAAAGGAAAAGAAAA 57.139 29.630 0.00 0.00 0.00 2.29
1509 1569 8.470002 CCAAAGAAAGAGAGAAAGGAAAAGAAA 58.530 33.333 0.00 0.00 0.00 2.52
1510 1570 7.615757 ACCAAAGAAAGAGAGAAAGGAAAAGAA 59.384 33.333 0.00 0.00 0.00 2.52
1511 1571 7.067494 CACCAAAGAAAGAGAGAAAGGAAAAGA 59.933 37.037 0.00 0.00 0.00 2.52
1512 1572 7.067494 TCACCAAAGAAAGAGAGAAAGGAAAAG 59.933 37.037 0.00 0.00 0.00 2.27
1513 1573 6.889722 TCACCAAAGAAAGAGAGAAAGGAAAA 59.110 34.615 0.00 0.00 0.00 2.29
1517 1577 5.414144 GGATCACCAAAGAAAGAGAGAAAGG 59.586 44.000 0.00 0.00 35.97 3.11
1522 1587 4.904241 ACAGGATCACCAAAGAAAGAGAG 58.096 43.478 0.00 0.00 38.94 3.20
1526 1591 3.754965 TGGACAGGATCACCAAAGAAAG 58.245 45.455 0.00 0.00 38.94 2.62
1583 1648 2.613725 GGGAACGAACGACACCCTAATT 60.614 50.000 15.33 0.00 37.75 1.40
1591 1656 1.201647 GAGAGATGGGAACGAACGACA 59.798 52.381 0.14 0.00 0.00 4.35
1595 1660 0.531200 ACGGAGAGATGGGAACGAAC 59.469 55.000 0.00 0.00 0.00 3.95
1597 1662 0.323087 TCACGGAGAGATGGGAACGA 60.323 55.000 0.00 0.00 0.00 3.85
1613 1678 9.162764 AGTATGAAGTATTTACACAACCATCAC 57.837 33.333 0.00 0.00 0.00 3.06
1729 1794 5.207768 CACAATCGCAGGCATAAATAGAAC 58.792 41.667 0.00 0.00 0.00 3.01
1779 1847 7.675062 CCCATAGCACAGAACTCTAATCTAAT 58.325 38.462 0.00 0.00 0.00 1.73
1786 1854 1.762957 GGCCCATAGCACAGAACTCTA 59.237 52.381 0.00 0.00 46.50 2.43
1805 1873 8.040132 AGATAAGAAAGAGTTGACATCTTCAGG 58.960 37.037 0.00 0.00 35.98 3.86
1882 2068 4.439057 GGGTAATCTGCAATCTCGTAACA 58.561 43.478 0.00 0.00 0.00 2.41
1911 2097 2.872245 CCTGTTGTGTCATATTAGCCGG 59.128 50.000 0.00 0.00 0.00 6.13
1912 2098 3.792401 TCCTGTTGTGTCATATTAGCCG 58.208 45.455 0.00 0.00 0.00 5.52
1913 2099 6.992715 ACTAATCCTGTTGTGTCATATTAGCC 59.007 38.462 0.00 0.00 32.52 3.93
1914 2100 9.712305 ATACTAATCCTGTTGTGTCATATTAGC 57.288 33.333 0.00 0.00 32.52 3.09
1921 2107 9.865321 GTACTAAATACTAATCCTGTTGTGTCA 57.135 33.333 0.00 0.00 0.00 3.58
1924 2110 9.530633 GGAGTACTAAATACTAATCCTGTTGTG 57.469 37.037 0.00 0.00 44.64 3.33
1925 2111 8.702819 GGGAGTACTAAATACTAATCCTGTTGT 58.297 37.037 0.00 0.00 44.64 3.32
1926 2112 8.925338 AGGGAGTACTAAATACTAATCCTGTTG 58.075 37.037 0.00 0.00 44.64 3.33
1928 2114 7.729431 GGAGGGAGTACTAAATACTAATCCTGT 59.271 40.741 0.00 0.00 44.64 4.00
1929 2115 7.094291 CGGAGGGAGTACTAAATACTAATCCTG 60.094 44.444 0.00 1.62 44.64 3.86
1930 2116 6.947158 CGGAGGGAGTACTAAATACTAATCCT 59.053 42.308 0.00 0.00 44.64 3.24
1932 2118 7.757941 ACGGAGGGAGTACTAAATACTAATC 57.242 40.000 0.00 0.00 44.64 1.75
1933 2119 8.419442 CAAACGGAGGGAGTACTAAATACTAAT 58.581 37.037 0.00 0.00 44.64 1.73
1934 2120 7.147846 CCAAACGGAGGGAGTACTAAATACTAA 60.148 40.741 0.00 0.00 44.64 2.24
1935 2121 6.322201 CCAAACGGAGGGAGTACTAAATACTA 59.678 42.308 0.00 0.00 44.64 1.82
1936 2122 8.458401 TTCCAAACGGAGGGAGTACTAAATACT 61.458 40.741 0.00 0.00 39.33 2.12
1937 2123 5.127682 TCCAAACGGAGGGAGTACTAAATAC 59.872 44.000 0.00 0.00 0.00 1.89
1939 2125 4.098894 TCCAAACGGAGGGAGTACTAAAT 58.901 43.478 0.00 0.00 0.00 1.40
1940 2126 3.509442 TCCAAACGGAGGGAGTACTAAA 58.491 45.455 0.00 0.00 0.00 1.85
1941 2127 3.173953 TCCAAACGGAGGGAGTACTAA 57.826 47.619 0.00 0.00 0.00 2.24
1942 2128 2.905415 TCCAAACGGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
1943 2129 2.019807 TTCCAAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 34.02 2.73
1944 2130 3.345508 AATTCCAAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 34.02 2.73
1945 2131 4.098894 AGTAATTCCAAACGGAGGGAGTA 58.901 43.478 0.00 0.00 34.02 2.59
1946 2132 2.910977 AGTAATTCCAAACGGAGGGAGT 59.089 45.455 0.00 0.00 34.02 3.85
1947 2133 3.629142 AGTAATTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
1948 2134 3.073356 ACAAGTAATTCCAAACGGAGGGA 59.927 43.478 0.00 0.00 32.88 4.20
1949 2135 3.418047 ACAAGTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
1950 2136 4.069304 TGACAAGTAATTCCAAACGGAGG 58.931 43.478 0.00 0.00 32.88 4.30
1951 2137 4.513692 TGTGACAAGTAATTCCAAACGGAG 59.486 41.667 0.00 0.00 32.88 4.63
1952 2138 4.452825 TGTGACAAGTAATTCCAAACGGA 58.547 39.130 0.00 0.00 0.00 4.69
1953 2139 4.822036 TGTGACAAGTAATTCCAAACGG 57.178 40.909 0.00 0.00 0.00 4.44
1954 2140 7.513190 TTTTTGTGACAAGTAATTCCAAACG 57.487 32.000 0.00 0.00 0.00 3.60
1955 2141 8.334632 CCATTTTTGTGACAAGTAATTCCAAAC 58.665 33.333 0.00 0.00 0.00 2.93
1956 2142 8.260818 TCCATTTTTGTGACAAGTAATTCCAAA 58.739 29.630 0.00 0.00 0.00 3.28
1957 2143 7.786030 TCCATTTTTGTGACAAGTAATTCCAA 58.214 30.769 0.00 0.00 0.00 3.53
1958 2144 7.353414 TCCATTTTTGTGACAAGTAATTCCA 57.647 32.000 0.00 0.00 0.00 3.53
1959 2145 7.872483 ACATCCATTTTTGTGACAAGTAATTCC 59.128 33.333 0.00 0.00 0.00 3.01
1960 2146 8.816640 ACATCCATTTTTGTGACAAGTAATTC 57.183 30.769 0.00 0.00 0.00 2.17
1963 2149 9.295825 AGATACATCCATTTTTGTGACAAGTAA 57.704 29.630 0.00 0.00 0.00 2.24
1964 2150 8.862325 AGATACATCCATTTTTGTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
1965 2151 7.765695 AGATACATCCATTTTTGTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
1966 2152 8.729756 TGTAGATACATCCATTTTTGTGACAAG 58.270 33.333 0.00 0.00 0.00 3.16
1967 2153 8.628630 TGTAGATACATCCATTTTTGTGACAA 57.371 30.769 0.00 0.00 0.00 3.18
1968 2154 8.511321 GTTGTAGATACATCCATTTTTGTGACA 58.489 33.333 0.00 0.00 35.89 3.58
1969 2155 8.730680 AGTTGTAGATACATCCATTTTTGTGAC 58.269 33.333 0.00 0.00 35.89 3.67
1970 2156 8.862325 AGTTGTAGATACATCCATTTTTGTGA 57.138 30.769 0.00 0.00 35.89 3.58
2001 2187 9.469807 GTCGAAGAAATGAATGTATCTAGATGT 57.530 33.333 15.79 0.00 39.69 3.06
2002 2188 8.634265 CGTCGAAGAAATGAATGTATCTAGATG 58.366 37.037 15.79 0.00 39.69 2.90
2003 2189 8.568794 TCGTCGAAGAAATGAATGTATCTAGAT 58.431 33.333 10.73 10.73 39.69 1.98
2004 2190 7.927048 TCGTCGAAGAAATGAATGTATCTAGA 58.073 34.615 0.00 0.00 39.69 2.43
2005 2191 7.858382 ACTCGTCGAAGAAATGAATGTATCTAG 59.142 37.037 1.95 0.00 39.69 2.43
2006 2192 7.704271 ACTCGTCGAAGAAATGAATGTATCTA 58.296 34.615 1.95 0.00 39.69 1.98
2007 2193 6.565234 ACTCGTCGAAGAAATGAATGTATCT 58.435 36.000 1.95 0.00 39.69 1.98
2008 2194 6.814076 ACTCGTCGAAGAAATGAATGTATC 57.186 37.500 1.95 0.00 39.69 2.24
2009 2195 7.974501 AGTTACTCGTCGAAGAAATGAATGTAT 59.025 33.333 1.95 0.00 39.69 2.29
2010 2196 7.310664 AGTTACTCGTCGAAGAAATGAATGTA 58.689 34.615 1.95 0.00 39.69 2.29
2011 2197 6.157211 AGTTACTCGTCGAAGAAATGAATGT 58.843 36.000 1.95 0.00 39.69 2.71
2012 2198 6.633668 AGTTACTCGTCGAAGAAATGAATG 57.366 37.500 1.95 0.00 39.69 2.67
2013 2199 7.279470 GAAGTTACTCGTCGAAGAAATGAAT 57.721 36.000 1.95 0.00 39.69 2.57
2014 2200 6.686130 GAAGTTACTCGTCGAAGAAATGAA 57.314 37.500 1.95 0.00 39.69 2.57
2024 2210 1.125748 ACTCGTCGAAGTTACTCGTCG 59.874 52.381 13.48 13.48 46.69 5.12
2025 2211 2.871263 ACTCGTCGAAGTTACTCGTC 57.129 50.000 0.00 0.00 39.84 4.20
2026 2212 4.935885 ATTACTCGTCGAAGTTACTCGT 57.064 40.909 0.00 0.00 39.84 4.18
2027 2213 4.727655 GGAATTACTCGTCGAAGTTACTCG 59.272 45.833 0.00 0.00 40.25 4.18
2028 2214 4.727655 CGGAATTACTCGTCGAAGTTACTC 59.272 45.833 0.00 0.00 0.00 2.59
2029 2215 4.393062 TCGGAATTACTCGTCGAAGTTACT 59.607 41.667 0.00 0.00 0.00 2.24
2030 2216 4.651994 TCGGAATTACTCGTCGAAGTTAC 58.348 43.478 0.00 0.00 0.00 2.50
2031 2217 4.944962 TCGGAATTACTCGTCGAAGTTA 57.055 40.909 0.00 0.00 0.00 2.24
2032 2218 3.837213 TCGGAATTACTCGTCGAAGTT 57.163 42.857 0.00 0.00 0.00 2.66
2033 2219 3.058016 TGTTCGGAATTACTCGTCGAAGT 60.058 43.478 0.00 0.00 39.89 3.01
2034 2220 3.495193 TGTTCGGAATTACTCGTCGAAG 58.505 45.455 0.00 0.00 39.89 3.79
2035 2221 3.189080 TCTGTTCGGAATTACTCGTCGAA 59.811 43.478 0.00 0.00 37.48 3.71
2036 2222 2.743664 TCTGTTCGGAATTACTCGTCGA 59.256 45.455 0.00 0.00 0.00 4.20
2037 2223 3.099362 CTCTGTTCGGAATTACTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
2038 2224 3.436496 CCTCTGTTCGGAATTACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
2039 2225 2.165845 CCCTCTGTTCGGAATTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
2040 2226 2.426024 TCCCTCTGTTCGGAATTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
2041 2227 3.447944 ACTCCCTCTGTTCGGAATTACTC 59.552 47.826 0.00 0.00 0.00 2.59
2042 2228 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2043 2229 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2044 2230 4.346730 TGTACTCCCTCTGTTCGGAATTA 58.653 43.478 0.00 0.00 0.00 1.40
2045 2231 3.170717 TGTACTCCCTCTGTTCGGAATT 58.829 45.455 0.00 0.00 0.00 2.17
2046 2232 2.816411 TGTACTCCCTCTGTTCGGAAT 58.184 47.619 0.00 0.00 0.00 3.01
2047 2233 2.297698 TGTACTCCCTCTGTTCGGAA 57.702 50.000 0.00 0.00 0.00 4.30
2048 2234 1.891150 GTTGTACTCCCTCTGTTCGGA 59.109 52.381 0.00 0.00 0.00 4.55
2049 2235 1.893801 AGTTGTACTCCCTCTGTTCGG 59.106 52.381 0.00 0.00 0.00 4.30
2050 2236 3.662247 AAGTTGTACTCCCTCTGTTCG 57.338 47.619 0.00 0.00 0.00 3.95
2051 2237 5.010820 AGTGTAAGTTGTACTCCCTCTGTTC 59.989 44.000 0.00 0.00 0.00 3.18
2052 2238 4.900054 AGTGTAAGTTGTACTCCCTCTGTT 59.100 41.667 0.00 0.00 0.00 3.16
2053 2239 4.481072 AGTGTAAGTTGTACTCCCTCTGT 58.519 43.478 0.00 0.00 0.00 3.41
2054 2240 5.244178 AGAAGTGTAAGTTGTACTCCCTCTG 59.756 44.000 0.00 0.00 0.00 3.35
2055 2241 5.395611 AGAAGTGTAAGTTGTACTCCCTCT 58.604 41.667 0.00 0.00 0.00 3.69
2056 2242 5.725325 AGAAGTGTAAGTTGTACTCCCTC 57.275 43.478 0.00 0.00 0.00 4.30
2057 2243 6.126854 ACAAAGAAGTGTAAGTTGTACTCCCT 60.127 38.462 0.00 0.00 30.88 4.20
2058 2244 6.053650 ACAAAGAAGTGTAAGTTGTACTCCC 58.946 40.000 0.00 0.00 30.88 4.30
2059 2245 8.070007 GTACAAAGAAGTGTAAGTTGTACTCC 57.930 38.462 14.59 0.00 45.60 3.85
2074 2260 5.183713 TCTGGGCAATGAATGTACAAAGAAG 59.816 40.000 0.00 0.00 0.00 2.85
2114 2300 6.758886 GCGTATCTTAAATCATCCTGGGATAG 59.241 42.308 1.42 0.00 32.93 2.08
2118 2304 4.003648 GGCGTATCTTAAATCATCCTGGG 58.996 47.826 0.00 0.00 0.00 4.45
2126 2312 7.897575 ATCAGATCAAGGCGTATCTTAAATC 57.102 36.000 0.00 0.00 29.93 2.17
2135 2321 5.358725 TGTGTTAGTATCAGATCAAGGCGTA 59.641 40.000 0.00 0.00 0.00 4.42
2138 2324 5.053145 CCTGTGTTAGTATCAGATCAAGGC 58.947 45.833 0.00 0.00 0.00 4.35
2148 2334 7.488471 GTGACATGTTACTCCTGTGTTAGTATC 59.512 40.741 13.20 0.00 0.00 2.24
2165 2351 4.286910 GCGTTTTACACATGTGACATGTT 58.713 39.130 31.94 19.66 0.00 2.71
2172 2358 5.545658 ATTAGAGGCGTTTTACACATGTG 57.454 39.130 24.25 24.25 0.00 3.21
2192 2378 7.627311 TGTATAGCCTGCATGATCTGAATATT 58.373 34.615 0.00 0.00 0.00 1.28
2196 2382 4.961438 TGTATAGCCTGCATGATCTGAA 57.039 40.909 0.00 0.00 0.00 3.02
2197 2383 5.718607 ACTATGTATAGCCTGCATGATCTGA 59.281 40.000 0.00 0.00 33.68 3.27
2199 2385 5.718607 TGACTATGTATAGCCTGCATGATCT 59.281 40.000 0.00 0.00 33.68 2.75
2205 2391 6.425210 AGAATTGACTATGTATAGCCTGCA 57.575 37.500 0.00 0.00 33.68 4.41
2216 2402 8.709386 ACAAGCAACTAGTAGAATTGACTATG 57.291 34.615 3.59 0.49 0.00 2.23
2220 2406 7.421530 TTGACAAGCAACTAGTAGAATTGAC 57.578 36.000 3.59 9.70 0.00 3.18
2221 2407 7.497579 TGTTTGACAAGCAACTAGTAGAATTGA 59.502 33.333 3.59 0.00 35.91 2.57
2224 2410 7.801716 TTGTTTGACAAGCAACTAGTAGAAT 57.198 32.000 12.80 0.00 35.91 2.40
2226 2412 7.602644 CCTATTGTTTGACAAGCAACTAGTAGA 59.397 37.037 18.19 0.00 41.94 2.59
2227 2413 7.148407 CCCTATTGTTTGACAAGCAACTAGTAG 60.148 40.741 18.19 14.88 41.94 2.57
2228 2414 6.653320 CCCTATTGTTTGACAAGCAACTAGTA 59.347 38.462 18.19 7.43 41.94 1.82
2229 2415 5.473504 CCCTATTGTTTGACAAGCAACTAGT 59.526 40.000 18.19 6.70 41.94 2.57
2230 2416 5.106157 CCCCTATTGTTTGACAAGCAACTAG 60.106 44.000 18.19 17.69 41.94 2.57
2231 2417 4.764823 CCCCTATTGTTTGACAAGCAACTA 59.235 41.667 18.19 11.30 41.94 2.24
2232 2418 3.573967 CCCCTATTGTTTGACAAGCAACT 59.426 43.478 18.19 10.85 41.94 3.16
2234 2420 3.838565 TCCCCTATTGTTTGACAAGCAA 58.161 40.909 18.14 18.14 41.94 3.91
2236 2422 4.864704 TTTCCCCTATTGTTTGACAAGC 57.135 40.909 0.00 0.00 41.94 4.01
2237 2423 5.723295 CCATTTCCCCTATTGTTTGACAAG 58.277 41.667 0.00 0.00 41.94 3.16
2238 2424 4.020662 GCCATTTCCCCTATTGTTTGACAA 60.021 41.667 0.00 0.00 42.95 3.18
2241 2427 3.784178 TGCCATTTCCCCTATTGTTTGA 58.216 40.909 0.00 0.00 0.00 2.69
2242 2428 4.550076 TTGCCATTTCCCCTATTGTTTG 57.450 40.909 0.00 0.00 0.00 2.93
2243 2429 5.309282 TCTTTTGCCATTTCCCCTATTGTTT 59.691 36.000 0.00 0.00 0.00 2.83
2245 2431 4.424842 TCTTTTGCCATTTCCCCTATTGT 58.575 39.130 0.00 0.00 0.00 2.71
2246 2432 5.129155 TGATCTTTTGCCATTTCCCCTATTG 59.871 40.000 0.00 0.00 0.00 1.90
2252 2439 5.308014 AGTTTTGATCTTTTGCCATTTCCC 58.692 37.500 0.00 0.00 0.00 3.97
2261 2448 6.012658 TGAATCCCGAGTTTTGATCTTTTG 57.987 37.500 0.00 0.00 0.00 2.44
2262 2449 6.127619 GGATGAATCCCGAGTTTTGATCTTTT 60.128 38.462 0.00 0.00 41.20 2.27
2313 2500 7.962964 TTTCGACAATCAACTATCTTTCTGT 57.037 32.000 0.00 0.00 0.00 3.41
2314 2501 7.959651 CCTTTTCGACAATCAACTATCTTTCTG 59.040 37.037 0.00 0.00 0.00 3.02
2315 2502 7.878127 TCCTTTTCGACAATCAACTATCTTTCT 59.122 33.333 0.00 0.00 0.00 2.52
2316 2503 8.029642 TCCTTTTCGACAATCAACTATCTTTC 57.970 34.615 0.00 0.00 0.00 2.62
2317 2504 7.661847 ACTCCTTTTCGACAATCAACTATCTTT 59.338 33.333 0.00 0.00 0.00 2.52
2320 2507 6.969828 ACTCCTTTTCGACAATCAACTATC 57.030 37.500 0.00 0.00 0.00 2.08
2321 2508 9.099454 GATAACTCCTTTTCGACAATCAACTAT 57.901 33.333 0.00 0.00 0.00 2.12
2322 2509 8.092068 TGATAACTCCTTTTCGACAATCAACTA 58.908 33.333 0.00 0.00 0.00 2.24
2323 2510 6.934645 TGATAACTCCTTTTCGACAATCAACT 59.065 34.615 0.00 0.00 0.00 3.16
2324 2511 7.015877 GTGATAACTCCTTTTCGACAATCAAC 58.984 38.462 0.00 0.00 0.00 3.18
2325 2512 6.708502 TGTGATAACTCCTTTTCGACAATCAA 59.291 34.615 0.00 0.00 0.00 2.57
2326 2513 6.227522 TGTGATAACTCCTTTTCGACAATCA 58.772 36.000 0.00 0.00 0.00 2.57
2327 2514 6.721571 TGTGATAACTCCTTTTCGACAATC 57.278 37.500 0.00 0.00 0.00 2.67
2328 2515 7.504924 TTTGTGATAACTCCTTTTCGACAAT 57.495 32.000 0.00 0.00 0.00 2.71
2329 2516 6.928979 TTTGTGATAACTCCTTTTCGACAA 57.071 33.333 0.00 0.00 0.00 3.18
2330 2517 7.012894 ACAATTTGTGATAACTCCTTTTCGACA 59.987 33.333 0.15 0.00 0.00 4.35
2331 2518 7.360361 ACAATTTGTGATAACTCCTTTTCGAC 58.640 34.615 0.15 0.00 0.00 4.20
2333 2520 9.672086 TTAACAATTTGTGATAACTCCTTTTCG 57.328 29.630 2.13 0.00 0.00 3.46
2338 2528 8.739972 GGATGTTAACAATTTGTGATAACTCCT 58.260 33.333 13.23 8.59 42.84 3.69
2353 2543 6.808321 ATCTACTGCCTAGGATGTTAACAA 57.192 37.500 14.75 0.00 0.00 2.83
2358 2548 5.071115 GGAGAAATCTACTGCCTAGGATGTT 59.929 44.000 14.75 0.00 0.00 2.71
2382 2572 1.135257 AGAATCAAGACGCTGTCTCCG 60.135 52.381 10.82 6.68 42.59 4.63
2388 2578 1.135257 AGTCGGAGAATCAAGACGCTG 60.135 52.381 0.00 0.00 45.02 5.18
2393 2583 6.681616 GCAGAATCTTAGTCGGAGAATCAAGA 60.682 42.308 0.00 0.00 39.69 3.02
2415 2605 1.559831 TGCTCGTCGACATAATGCAG 58.440 50.000 17.16 0.00 0.00 4.41
2471 2661 3.298619 GGAGAACCCCCTCTTACTACTC 58.701 54.545 0.00 0.00 33.79 2.59
2535 2725 4.675161 TGCGCCATTGCCCTCCAA 62.675 61.111 4.18 0.00 37.94 3.53
2598 2788 0.036164 TTGGCGCAAAAGCTCCTCTA 59.964 50.000 10.83 0.00 37.29 2.43
2633 2823 1.204704 CTGTGGGTAAGCACGATCTGA 59.795 52.381 0.00 0.00 0.00 3.27
2652 2842 3.715097 GCAGCTGACCCAGAGGCT 61.715 66.667 20.43 0.00 36.11 4.58
2654 2844 1.376942 CTTGCAGCTGACCCAGAGG 60.377 63.158 20.43 0.00 40.04 3.69
2655 2845 0.035881 TTCTTGCAGCTGACCCAGAG 59.964 55.000 20.43 5.07 32.44 3.35
2658 2848 0.473755 TTCTTCTTGCAGCTGACCCA 59.526 50.000 20.43 2.58 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.