Multiple sequence alignment - TraesCS6B01G324300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G324300 chr6B 100.000 3634 0 0 1 3634 573681222 573684855 0.000000e+00 6711.0
1 TraesCS6B01G324300 chr6B 74.187 523 93 20 1 518 66739663 66739178 2.880000e-41 180.0
2 TraesCS6B01G324300 chr6B 100.000 28 0 0 2307 2334 573683433 573683460 7.000000e-03 52.8
3 TraesCS6B01G324300 chr6B 100.000 28 0 0 2212 2239 573683528 573683555 7.000000e-03 52.8
4 TraesCS6B01G324300 chr6D 92.516 3327 151 39 1 3283 383540640 383543912 0.000000e+00 4674.0
5 TraesCS6B01G324300 chr6A 91.639 3265 180 43 48 3283 525755034 525758234 0.000000e+00 4431.0
6 TraesCS6B01G324300 chr6A 89.954 219 22 0 1 219 525745824 525746042 2.140000e-72 283.0
7 TraesCS6B01G324300 chr6A 100.000 28 0 0 1 28 525755009 525755036 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G324300 chr6B 573681222 573684855 3633 False 2272.2 6711 100.0000 1 3634 3 chr6B.!!$F1 3633
1 TraesCS6B01G324300 chr6D 383540640 383543912 3272 False 4674.0 4674 92.5160 1 3283 1 chr6D.!!$F1 3282
2 TraesCS6B01G324300 chr6A 525755009 525758234 3225 False 2241.9 4431 95.8195 1 3283 2 chr6A.!!$F2 3282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 470 0.478072 ATGCAGGTGGACAGGTTGAA 59.522 50.0 0.0 0.0 0.0 2.69 F
1315 1346 0.466372 TGACCGATCTCTCATCCGCT 60.466 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2127 0.909623 GTAGAGCTAGGGCCAACCAA 59.09 55.0 6.18 0.0 43.89 3.67 R
3303 3364 0.109735 TCGTGTTGTAGAGCGAGCTG 60.11 55.0 0.84 0.0 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.154567 AGATAGGTGTTGGACGGCTA 57.845 50.000 0.00 0.00 0.00 3.93
46 47 1.940883 TAGGTGTTGGACGGCTAGCG 61.941 60.000 9.00 6.83 0.00 4.26
53 54 1.038681 TGGACGGCTAGCGGATTGTA 61.039 55.000 27.05 7.21 0.00 2.41
57 58 1.215655 CGGCTAGCGGATTGTAGTGC 61.216 60.000 16.80 0.00 0.00 4.40
66 67 2.942648 GATTGTAGTGCCGGGGCCTC 62.943 65.000 2.18 0.00 41.09 4.70
78 79 2.507944 GGCCTCTCGCATCCACAT 59.492 61.111 0.00 0.00 40.31 3.21
89 90 1.152610 ATCCACATGCATGCCCCTC 60.153 57.895 26.53 0.00 0.00 4.30
90 91 1.940242 ATCCACATGCATGCCCCTCA 61.940 55.000 26.53 5.28 0.00 3.86
116 117 1.636003 TCAGGAGCCTGAGTCTCTACA 59.364 52.381 15.01 0.00 46.80 2.74
122 123 4.402793 GGAGCCTGAGTCTCTACAACATAA 59.597 45.833 0.65 0.00 0.00 1.90
127 128 6.692486 CCTGAGTCTCTACAACATAACTTGT 58.308 40.000 0.65 0.00 41.53 3.16
128 129 6.809196 CCTGAGTCTCTACAACATAACTTGTC 59.191 42.308 0.65 0.00 37.68 3.18
204 205 1.140161 CATTGGATGCTTGCACCCG 59.860 57.895 1.10 0.00 0.00 5.28
205 206 1.001020 ATTGGATGCTTGCACCCGA 60.001 52.632 0.00 0.00 0.00 5.14
206 207 1.033746 ATTGGATGCTTGCACCCGAG 61.034 55.000 2.02 0.00 0.00 4.63
207 208 2.825836 GGATGCTTGCACCCGAGG 60.826 66.667 0.00 0.00 0.00 4.63
208 209 2.268920 GATGCTTGCACCCGAGGA 59.731 61.111 0.00 0.00 0.00 3.71
209 210 1.817099 GATGCTTGCACCCGAGGAG 60.817 63.158 0.00 0.00 0.00 3.69
210 211 3.335356 ATGCTTGCACCCGAGGAGG 62.335 63.158 0.00 0.00 40.63 4.30
211 212 3.706373 GCTTGCACCCGAGGAGGA 61.706 66.667 0.00 0.00 45.00 3.71
212 213 2.581354 CTTGCACCCGAGGAGGAG 59.419 66.667 0.00 0.00 45.00 3.69
213 214 2.203788 TTGCACCCGAGGAGGAGT 60.204 61.111 0.00 0.00 45.00 3.85
214 215 1.831652 CTTGCACCCGAGGAGGAGTT 61.832 60.000 0.00 0.00 45.00 3.01
215 216 2.111999 TTGCACCCGAGGAGGAGTTG 62.112 60.000 0.00 0.00 45.00 3.16
216 217 2.266055 CACCCGAGGAGGAGTTGC 59.734 66.667 0.00 0.00 45.00 4.17
217 218 2.120718 ACCCGAGGAGGAGTTGCT 59.879 61.111 0.00 0.00 45.00 3.91
218 219 1.536662 ACCCGAGGAGGAGTTGCTT 60.537 57.895 0.00 0.00 45.00 3.91
237 238 3.480470 CTTTGAGGAGGAGTTGCTTCAA 58.520 45.455 0.00 0.00 0.00 2.69
240 241 2.639347 TGAGGAGGAGTTGCTTCAATGA 59.361 45.455 0.00 0.00 0.00 2.57
298 299 1.496060 TGCTTGGACCGGTATCATCT 58.504 50.000 7.34 0.00 0.00 2.90
332 333 4.283337 ACCATTTGGATGCATGAGAATGA 58.717 39.130 19.38 0.00 38.94 2.57
346 347 6.018098 GCATGAGAATGAGTGGTCTTCAATAG 60.018 42.308 0.00 0.00 0.00 1.73
350 351 1.559682 TGAGTGGTCTTCAATAGGGCC 59.440 52.381 0.00 0.00 0.00 5.80
353 354 1.282157 GTGGTCTTCAATAGGGCCACT 59.718 52.381 6.18 1.30 42.14 4.00
354 355 1.281867 TGGTCTTCAATAGGGCCACTG 59.718 52.381 6.18 0.00 0.00 3.66
386 387 2.009774 GTAGTGCTGCAACGAATCCAT 58.990 47.619 2.77 0.00 0.00 3.41
390 391 2.420022 GTGCTGCAACGAATCCATAACT 59.580 45.455 2.77 0.00 0.00 2.24
392 393 4.094294 GTGCTGCAACGAATCCATAACTAA 59.906 41.667 2.77 0.00 0.00 2.24
455 456 9.218440 AGATGTTTTGGGTAATTTTTAATGCAG 57.782 29.630 0.00 0.00 0.00 4.41
466 467 2.969821 TTAATGCAGGTGGACAGGTT 57.030 45.000 0.00 0.00 0.00 3.50
469 470 0.478072 ATGCAGGTGGACAGGTTGAA 59.522 50.000 0.00 0.00 0.00 2.69
503 504 3.066203 AGTCCGCATGTCGTTTTCTTTTT 59.934 39.130 8.37 0.00 36.19 1.94
523 524 3.591695 TTTGGCCTCCATGCATATGTA 57.408 42.857 3.32 0.00 31.53 2.29
581 584 3.198872 CCATTCTCGGCTTTCCTTCTAC 58.801 50.000 0.00 0.00 0.00 2.59
590 595 4.319177 GGCTTTCCTTCTACGCATGATAT 58.681 43.478 0.00 0.00 0.00 1.63
599 604 2.533266 ACGCATGATATGTCTCCCAC 57.467 50.000 0.00 0.00 0.00 4.61
603 612 2.868044 GCATGATATGTCTCCCACGACC 60.868 54.545 0.00 0.00 32.97 4.79
673 683 8.847444 ATAACGGAAACAACTTAGTATAGTCG 57.153 34.615 0.00 0.00 0.00 4.18
757 775 6.650120 ACACGGAGAGATTATGTTGGTTAAT 58.350 36.000 0.00 0.00 0.00 1.40
766 784 7.056635 AGATTATGTTGGTTAATGTGAGGAGG 58.943 38.462 0.00 0.00 0.00 4.30
772 790 3.010420 GGTTAATGTGAGGAGGTGCTTC 58.990 50.000 0.00 0.00 0.00 3.86
784 802 3.330267 GAGGTGCTTCGAGATCTTTGTT 58.670 45.455 0.00 0.00 0.00 2.83
871 897 1.375523 GGTGTGGTGTCGTCATCCC 60.376 63.158 0.00 0.00 0.00 3.85
929 960 1.247567 GCACGGGCCTATATTTGCAT 58.752 50.000 0.00 0.00 0.00 3.96
951 982 2.289002 CCGCATCACAATTTAGAGGAGC 59.711 50.000 0.00 0.00 0.00 4.70
1202 1233 2.508439 CCGGCACACTTCGCGTAT 60.508 61.111 5.77 0.00 0.00 3.06
1279 1310 1.402062 GGTCCGTCCGTCTGTTTACTC 60.402 57.143 0.00 0.00 0.00 2.59
1315 1346 0.466372 TGACCGATCTCTCATCCGCT 60.466 55.000 0.00 0.00 0.00 5.52
1436 1469 2.357034 CCACCGTGCAGCGTACTT 60.357 61.111 7.68 0.00 39.32 2.24
1567 1600 3.602390 AAATCGTTGGTTTCGAGTGTG 57.398 42.857 0.00 0.00 40.57 3.82
1684 1722 2.747989 AGCAACTCTGTCGACGATCTTA 59.252 45.455 11.62 0.00 0.00 2.10
1735 1774 1.826385 CTGAAGATGTTGGGGGTGTC 58.174 55.000 0.00 0.00 0.00 3.67
2192 2243 8.073768 TCGAAACATGAAAATTCAACTTCTACC 58.926 33.333 0.00 0.00 41.13 3.18
2323 2374 8.925161 TGTTCCTCAAAAAGAAATAACAACAG 57.075 30.769 0.00 0.00 0.00 3.16
2345 2396 6.317893 ACAGACGAATCAAAAGTGTAGGTTTT 59.682 34.615 0.00 0.00 0.00 2.43
2356 2407 6.884280 AAGTGTAGGTTTTGAATCTTGAGG 57.116 37.500 0.00 0.00 0.00 3.86
2370 2421 6.263842 TGAATCTTGAGGCATATGACAAATCC 59.736 38.462 12.11 0.00 0.00 3.01
2427 2478 0.388649 CAGCAACGCCTTACTCTCGT 60.389 55.000 0.00 0.00 38.15 4.18
2645 2696 3.306019 GCCCGAATTTTGGATCAAGTTGT 60.306 43.478 4.07 0.00 0.00 3.32
2747 2804 1.196012 TGGTTTTGCCTTTCGGGTTT 58.804 45.000 0.00 0.00 38.35 3.27
2764 2821 0.665835 TTTGGCGACGATGTTTGCTT 59.334 45.000 0.00 0.00 0.00 3.91
2930 2987 1.270550 CCTTTTGAAACGCCAGCTGAT 59.729 47.619 17.39 0.00 0.00 2.90
3111 3169 3.122948 CGAACCCTCTACATTTTGACGTG 59.877 47.826 0.00 0.00 0.00 4.49
3112 3170 3.764237 ACCCTCTACATTTTGACGTGT 57.236 42.857 0.00 0.00 0.00 4.49
3121 3179 3.739300 ACATTTTGACGTGTAGAGGTTCG 59.261 43.478 0.00 0.00 0.00 3.95
3140 3198 2.029470 TCGCCCCAATTTCATGTTGTTC 60.029 45.455 0.00 0.00 0.00 3.18
3142 3200 2.302733 GCCCCAATTTCATGTTGTTCCT 59.697 45.455 0.00 0.00 0.00 3.36
3143 3201 3.244526 GCCCCAATTTCATGTTGTTCCTT 60.245 43.478 0.00 0.00 0.00 3.36
3154 3212 6.182627 TCATGTTGTTCCTTAGCTGATGATT 58.817 36.000 0.00 0.00 0.00 2.57
3156 3214 7.994911 TCATGTTGTTCCTTAGCTGATGATTAT 59.005 33.333 0.00 0.00 0.00 1.28
3158 3216 7.337938 TGTTGTTCCTTAGCTGATGATTATGA 58.662 34.615 0.00 0.00 0.00 2.15
3206 3265 7.442666 CCCCTTATCTGATTGCTTCTACTAAAC 59.557 40.741 0.00 0.00 0.00 2.01
3218 3279 1.932011 TACTAAACGGCCGCGCTACA 61.932 55.000 28.58 3.60 0.00 2.74
3240 3301 6.656902 ACACATCAGATGGTAGATGAATTGT 58.343 36.000 15.13 3.12 43.28 2.71
3254 3315 4.167554 TGAATTGTAAACATCAACCGCC 57.832 40.909 0.00 0.00 0.00 6.13
3268 3329 4.680237 CGCCTCCTGCACCGTTGA 62.680 66.667 0.00 0.00 41.33 3.18
3273 3334 1.238439 CTCCTGCACCGTTGAATTGT 58.762 50.000 0.00 0.00 0.00 2.71
3279 3340 0.660005 CACCGTTGAATTGTGGCACG 60.660 55.000 13.77 0.00 0.00 5.34
3283 3344 2.606795 CCGTTGAATTGTGGCACGAATT 60.607 45.455 20.37 20.37 0.00 2.17
3284 3345 3.049206 CGTTGAATTGTGGCACGAATTT 58.951 40.909 20.86 10.37 0.00 1.82
3285 3346 3.119463 CGTTGAATTGTGGCACGAATTTC 59.881 43.478 20.86 17.01 0.00 2.17
3286 3347 3.998099 TGAATTGTGGCACGAATTTCA 57.002 38.095 20.86 18.81 0.00 2.69
3287 3348 4.313277 TGAATTGTGGCACGAATTTCAA 57.687 36.364 17.50 4.51 0.00 2.69
3288 3349 4.047822 TGAATTGTGGCACGAATTTCAAC 58.952 39.130 17.50 10.88 0.00 3.18
3289 3350 3.724508 ATTGTGGCACGAATTTCAACA 57.275 38.095 12.40 0.00 0.00 3.33
3290 3351 3.510388 TTGTGGCACGAATTTCAACAA 57.490 38.095 13.77 0.00 0.00 2.83
3291 3352 3.077229 TGTGGCACGAATTTCAACAAG 57.923 42.857 13.77 0.00 0.00 3.16
3292 3353 2.223688 TGTGGCACGAATTTCAACAAGG 60.224 45.455 13.77 0.00 0.00 3.61
3293 3354 2.028130 TGGCACGAATTTCAACAAGGT 58.972 42.857 0.00 0.00 0.00 3.50
3294 3355 2.223688 TGGCACGAATTTCAACAAGGTG 60.224 45.455 0.00 0.00 0.00 4.00
3295 3356 2.034053 GGCACGAATTTCAACAAGGTGA 59.966 45.455 0.00 0.00 0.00 4.02
3296 3357 3.305335 GGCACGAATTTCAACAAGGTGAT 60.305 43.478 0.00 0.00 0.00 3.06
3297 3358 3.670055 GCACGAATTTCAACAAGGTGATG 59.330 43.478 0.00 0.00 0.00 3.07
3298 3359 4.792704 GCACGAATTTCAACAAGGTGATGT 60.793 41.667 0.00 0.00 34.24 3.06
3299 3360 5.280945 CACGAATTTCAACAAGGTGATGTT 58.719 37.500 0.00 0.00 44.08 2.71
3304 3365 2.413677 AACAAGGTGATGTTGCGCA 58.586 47.368 5.66 5.66 41.78 6.09
3305 3366 0.311790 AACAAGGTGATGTTGCGCAG 59.688 50.000 11.31 0.00 41.78 5.18
3306 3367 3.600428 AACAAGGTGATGTTGCGCAGC 62.600 52.381 18.16 18.16 44.25 5.25
3318 3379 3.378552 CGCAGCTCGCTCTACAAC 58.621 61.111 6.58 0.00 39.08 3.32
3319 3380 1.444383 CGCAGCTCGCTCTACAACA 60.444 57.895 6.58 0.00 39.08 3.33
3320 3381 1.678269 CGCAGCTCGCTCTACAACAC 61.678 60.000 6.58 0.00 39.08 3.32
3321 3382 1.678269 GCAGCTCGCTCTACAACACG 61.678 60.000 1.48 0.00 37.77 4.49
3322 3383 0.109735 CAGCTCGCTCTACAACACGA 60.110 55.000 0.00 0.00 0.00 4.35
3323 3384 0.596577 AGCTCGCTCTACAACACGAA 59.403 50.000 0.00 0.00 33.61 3.85
3324 3385 1.000607 AGCTCGCTCTACAACACGAAA 60.001 47.619 0.00 0.00 33.61 3.46
3325 3386 1.124477 GCTCGCTCTACAACACGAAAC 59.876 52.381 0.00 0.00 33.61 2.78
3326 3387 1.719780 CTCGCTCTACAACACGAAACC 59.280 52.381 0.00 0.00 33.61 3.27
3327 3388 1.067364 TCGCTCTACAACACGAAACCA 59.933 47.619 0.00 0.00 0.00 3.67
3328 3389 1.191647 CGCTCTACAACACGAAACCAC 59.808 52.381 0.00 0.00 0.00 4.16
3329 3390 1.529865 GCTCTACAACACGAAACCACC 59.470 52.381 0.00 0.00 0.00 4.61
3330 3391 1.790623 CTCTACAACACGAAACCACCG 59.209 52.381 0.00 0.00 0.00 4.94
3331 3392 1.408340 TCTACAACACGAAACCACCGA 59.592 47.619 0.00 0.00 0.00 4.69
3332 3393 2.159128 TCTACAACACGAAACCACCGAA 60.159 45.455 0.00 0.00 0.00 4.30
3333 3394 1.011333 ACAACACGAAACCACCGAAG 58.989 50.000 0.00 0.00 0.00 3.79
3334 3395 1.011333 CAACACGAAACCACCGAAGT 58.989 50.000 0.00 0.00 0.00 3.01
3335 3396 1.011333 AACACGAAACCACCGAAGTG 58.989 50.000 0.00 0.00 44.12 3.16
3336 3397 0.108041 ACACGAAACCACCGAAGTGT 60.108 50.000 0.00 0.00 42.88 3.55
3337 3398 1.011333 CACGAAACCACCGAAGTGTT 58.989 50.000 0.00 0.00 42.88 3.32
3338 3399 2.203401 CACGAAACCACCGAAGTGTTA 58.797 47.619 0.00 0.00 42.88 2.41
3339 3400 2.803956 CACGAAACCACCGAAGTGTTAT 59.196 45.455 0.00 0.00 42.88 1.89
3340 3401 3.249080 CACGAAACCACCGAAGTGTTATT 59.751 43.478 0.00 0.00 42.88 1.40
3341 3402 3.878699 ACGAAACCACCGAAGTGTTATTT 59.121 39.130 0.00 0.00 42.88 1.40
3342 3403 4.336153 ACGAAACCACCGAAGTGTTATTTT 59.664 37.500 0.00 0.00 42.88 1.82
3343 3404 5.163632 ACGAAACCACCGAAGTGTTATTTTT 60.164 36.000 0.00 0.00 42.88 1.94
3344 3405 5.172411 CGAAACCACCGAAGTGTTATTTTTG 59.828 40.000 0.00 0.00 42.88 2.44
3345 3406 3.972403 ACCACCGAAGTGTTATTTTTGC 58.028 40.909 0.00 0.00 42.88 3.68
3346 3407 3.634910 ACCACCGAAGTGTTATTTTTGCT 59.365 39.130 0.00 0.00 42.88 3.91
3347 3408 4.226761 CCACCGAAGTGTTATTTTTGCTC 58.773 43.478 0.00 0.00 42.88 4.26
3348 3409 3.906008 CACCGAAGTGTTATTTTTGCTCG 59.094 43.478 0.00 0.00 39.30 5.03
3349 3410 3.810941 ACCGAAGTGTTATTTTTGCTCGA 59.189 39.130 0.00 0.00 0.00 4.04
3350 3411 4.273969 ACCGAAGTGTTATTTTTGCTCGAA 59.726 37.500 0.00 0.00 0.00 3.71
3351 3412 5.209240 CCGAAGTGTTATTTTTGCTCGAAA 58.791 37.500 0.00 0.00 0.00 3.46
3352 3413 5.115021 CCGAAGTGTTATTTTTGCTCGAAAC 59.885 40.000 0.00 0.00 0.00 2.78
3353 3414 5.679355 CGAAGTGTTATTTTTGCTCGAAACA 59.321 36.000 0.00 0.00 0.00 2.83
3354 3415 6.195613 CGAAGTGTTATTTTTGCTCGAAACAA 59.804 34.615 0.00 0.00 0.00 2.83
3355 3416 7.253486 CGAAGTGTTATTTTTGCTCGAAACAAA 60.253 33.333 8.73 8.73 35.30 2.83
3356 3417 7.820044 AGTGTTATTTTTGCTCGAAACAAAA 57.180 28.000 17.50 17.50 43.33 2.44
3364 3425 8.696410 TTTTTGCTCGAAACAAAAACTCTATT 57.304 26.923 24.15 0.00 46.52 1.73
3365 3426 7.678194 TTTGCTCGAAACAAAAACTCTATTG 57.322 32.000 10.05 0.00 34.22 1.90
3366 3427 6.371809 TGCTCGAAACAAAAACTCTATTGT 57.628 33.333 0.00 0.00 41.31 2.71
3367 3428 6.198687 TGCTCGAAACAAAAACTCTATTGTG 58.801 36.000 0.00 0.00 39.57 3.33
3368 3429 6.183360 TGCTCGAAACAAAAACTCTATTGTGT 60.183 34.615 0.00 0.00 39.57 3.72
3369 3430 6.691388 GCTCGAAACAAAAACTCTATTGTGTT 59.309 34.615 0.00 0.00 39.57 3.32
3370 3431 7.097006 GCTCGAAACAAAAACTCTATTGTGTTC 60.097 37.037 0.00 0.00 39.57 3.18
3371 3432 7.190871 TCGAAACAAAAACTCTATTGTGTTCC 58.809 34.615 0.00 0.00 39.57 3.62
3372 3433 6.140108 CGAAACAAAAACTCTATTGTGTTCCG 59.860 38.462 0.00 0.00 39.57 4.30
3373 3434 6.687081 AACAAAAACTCTATTGTGTTCCGA 57.313 33.333 0.00 0.00 39.57 4.55
3374 3435 6.056428 ACAAAAACTCTATTGTGTTCCGAC 57.944 37.500 0.00 0.00 38.29 4.79
3375 3436 5.587043 ACAAAAACTCTATTGTGTTCCGACA 59.413 36.000 0.00 0.00 38.29 4.35
3376 3437 6.262273 ACAAAAACTCTATTGTGTTCCGACAT 59.738 34.615 0.00 0.00 38.29 3.06
3377 3438 7.442969 ACAAAAACTCTATTGTGTTCCGACATA 59.557 33.333 0.00 0.00 38.29 2.29
3378 3439 7.596749 AAAACTCTATTGTGTTCCGACATAG 57.403 36.000 0.00 0.00 38.23 2.23
3379 3440 5.916661 ACTCTATTGTGTTCCGACATAGT 57.083 39.130 0.00 0.00 38.23 2.12
3380 3441 6.282199 ACTCTATTGTGTTCCGACATAGTT 57.718 37.500 0.00 0.00 38.23 2.24
3381 3442 6.331061 ACTCTATTGTGTTCCGACATAGTTC 58.669 40.000 0.00 0.00 38.23 3.01
3382 3443 6.153000 ACTCTATTGTGTTCCGACATAGTTCT 59.847 38.462 0.00 0.00 38.23 3.01
3383 3444 6.931838 TCTATTGTGTTCCGACATAGTTCTT 58.068 36.000 0.00 0.00 38.23 2.52
3384 3445 5.862924 ATTGTGTTCCGACATAGTTCTTG 57.137 39.130 0.00 0.00 38.23 3.02
3385 3446 4.330944 TGTGTTCCGACATAGTTCTTGT 57.669 40.909 0.00 0.00 38.23 3.16
3386 3447 4.699637 TGTGTTCCGACATAGTTCTTGTT 58.300 39.130 0.00 0.00 38.23 2.83
3387 3448 4.509970 TGTGTTCCGACATAGTTCTTGTTG 59.490 41.667 0.00 0.00 38.23 3.33
3388 3449 3.496884 TGTTCCGACATAGTTCTTGTTGC 59.503 43.478 0.00 0.00 0.00 4.17
3389 3450 3.394674 TCCGACATAGTTCTTGTTGCA 57.605 42.857 0.00 0.00 0.00 4.08
3390 3451 3.325870 TCCGACATAGTTCTTGTTGCAG 58.674 45.455 0.00 0.00 0.00 4.41
3391 3452 3.006430 TCCGACATAGTTCTTGTTGCAGA 59.994 43.478 0.00 0.00 0.00 4.26
3392 3453 3.745975 CCGACATAGTTCTTGTTGCAGAA 59.254 43.478 0.00 0.00 0.00 3.02
3393 3454 4.213270 CCGACATAGTTCTTGTTGCAGAAA 59.787 41.667 0.00 0.00 34.50 2.52
3394 3455 5.106555 CCGACATAGTTCTTGTTGCAGAAAT 60.107 40.000 0.00 0.00 34.50 2.17
3395 3456 6.092122 CCGACATAGTTCTTGTTGCAGAAATA 59.908 38.462 0.00 0.00 37.65 1.40
3396 3457 7.201644 CCGACATAGTTCTTGTTGCAGAAATAT 60.202 37.037 1.79 1.79 42.19 1.28
3397 3458 8.177663 CGACATAGTTCTTGTTGCAGAAATATT 58.822 33.333 4.27 0.00 39.78 1.28
3398 3459 9.846248 GACATAGTTCTTGTTGCAGAAATATTT 57.154 29.630 0.00 0.00 39.78 1.40
3399 3460 9.630098 ACATAGTTCTTGTTGCAGAAATATTTG 57.370 29.630 5.17 0.00 39.78 2.32
3400 3461 9.079833 CATAGTTCTTGTTGCAGAAATATTTGG 57.920 33.333 5.17 0.00 39.78 3.28
3401 3462 7.288810 AGTTCTTGTTGCAGAAATATTTGGA 57.711 32.000 5.17 0.00 34.50 3.53
3402 3463 7.725251 AGTTCTTGTTGCAGAAATATTTGGAA 58.275 30.769 5.17 0.00 34.50 3.53
3403 3464 7.869429 AGTTCTTGTTGCAGAAATATTTGGAAG 59.131 33.333 5.17 0.00 34.50 3.46
3404 3465 7.523293 TCTTGTTGCAGAAATATTTGGAAGA 57.477 32.000 5.17 0.00 0.00 2.87
3405 3466 7.596494 TCTTGTTGCAGAAATATTTGGAAGAG 58.404 34.615 5.17 2.70 0.00 2.85
3406 3467 7.448161 TCTTGTTGCAGAAATATTTGGAAGAGA 59.552 33.333 5.17 4.78 0.00 3.10
3407 3468 7.149569 TGTTGCAGAAATATTTGGAAGAGAG 57.850 36.000 5.17 0.00 0.00 3.20
3408 3469 6.151648 TGTTGCAGAAATATTTGGAAGAGAGG 59.848 38.462 5.17 0.00 0.00 3.69
3409 3470 5.819991 TGCAGAAATATTTGGAAGAGAGGT 58.180 37.500 5.17 0.00 0.00 3.85
3410 3471 5.649395 TGCAGAAATATTTGGAAGAGAGGTG 59.351 40.000 5.17 0.00 0.00 4.00
3411 3472 5.067023 GCAGAAATATTTGGAAGAGAGGTGG 59.933 44.000 5.17 0.00 0.00 4.61
3412 3473 6.183347 CAGAAATATTTGGAAGAGAGGTGGT 58.817 40.000 5.17 0.00 0.00 4.16
3413 3474 6.094603 CAGAAATATTTGGAAGAGAGGTGGTG 59.905 42.308 5.17 0.00 0.00 4.17
3414 3475 5.520748 AATATTTGGAAGAGAGGTGGTGT 57.479 39.130 0.00 0.00 0.00 4.16
3415 3476 3.884037 ATTTGGAAGAGAGGTGGTGTT 57.116 42.857 0.00 0.00 0.00 3.32
3416 3477 2.638480 TTGGAAGAGAGGTGGTGTTG 57.362 50.000 0.00 0.00 0.00 3.33
3417 3478 0.108585 TGGAAGAGAGGTGGTGTTGC 59.891 55.000 0.00 0.00 0.00 4.17
3418 3479 0.108585 GGAAGAGAGGTGGTGTTGCA 59.891 55.000 0.00 0.00 0.00 4.08
3419 3480 1.517242 GAAGAGAGGTGGTGTTGCAG 58.483 55.000 0.00 0.00 0.00 4.41
3420 3481 0.536006 AAGAGAGGTGGTGTTGCAGC 60.536 55.000 0.00 0.00 0.00 5.25
3421 3482 1.227943 GAGAGGTGGTGTTGCAGCA 60.228 57.895 0.00 0.00 39.63 4.41
3422 3483 0.607489 GAGAGGTGGTGTTGCAGCAT 60.607 55.000 6.50 0.00 43.70 3.79
3423 3484 0.692476 AGAGGTGGTGTTGCAGCATA 59.308 50.000 6.50 0.00 43.70 3.14
3424 3485 1.283029 AGAGGTGGTGTTGCAGCATAT 59.717 47.619 6.50 0.00 43.70 1.78
3425 3486 2.094675 GAGGTGGTGTTGCAGCATATT 58.905 47.619 6.50 0.00 43.70 1.28
3426 3487 2.493278 GAGGTGGTGTTGCAGCATATTT 59.507 45.455 6.50 0.00 43.70 1.40
3427 3488 2.493278 AGGTGGTGTTGCAGCATATTTC 59.507 45.455 6.50 0.00 43.70 2.17
3428 3489 2.493278 GGTGGTGTTGCAGCATATTTCT 59.507 45.455 6.50 0.00 43.70 2.52
3429 3490 3.504863 GTGGTGTTGCAGCATATTTCTG 58.495 45.455 6.50 0.00 43.70 3.02
3430 3491 3.057315 GTGGTGTTGCAGCATATTTCTGT 60.057 43.478 6.50 0.00 43.70 3.41
3431 3492 3.573538 TGGTGTTGCAGCATATTTCTGTT 59.426 39.130 6.50 0.00 36.93 3.16
3432 3493 4.039004 TGGTGTTGCAGCATATTTCTGTTT 59.961 37.500 6.50 0.00 36.93 2.83
3433 3494 4.990426 GGTGTTGCAGCATATTTCTGTTTT 59.010 37.500 6.50 0.00 34.21 2.43
3434 3495 5.119125 GGTGTTGCAGCATATTTCTGTTTTC 59.881 40.000 6.50 0.00 34.21 2.29
3435 3496 5.922544 GTGTTGCAGCATATTTCTGTTTTCT 59.077 36.000 6.50 0.00 34.21 2.52
3436 3497 6.421801 GTGTTGCAGCATATTTCTGTTTTCTT 59.578 34.615 6.50 0.00 34.21 2.52
3437 3498 6.642131 TGTTGCAGCATATTTCTGTTTTCTTC 59.358 34.615 0.00 0.00 34.21 2.87
3438 3499 6.330004 TGCAGCATATTTCTGTTTTCTTCA 57.670 33.333 0.00 0.00 34.21 3.02
3439 3500 6.151691 TGCAGCATATTTCTGTTTTCTTCAC 58.848 36.000 0.00 0.00 34.21 3.18
3440 3501 5.574443 GCAGCATATTTCTGTTTTCTTCACC 59.426 40.000 0.00 0.00 34.21 4.02
3441 3502 6.095377 CAGCATATTTCTGTTTTCTTCACCC 58.905 40.000 0.00 0.00 0.00 4.61
3442 3503 5.774690 AGCATATTTCTGTTTTCTTCACCCA 59.225 36.000 0.00 0.00 0.00 4.51
3443 3504 6.438425 AGCATATTTCTGTTTTCTTCACCCAT 59.562 34.615 0.00 0.00 0.00 4.00
3444 3505 7.038799 AGCATATTTCTGTTTTCTTCACCCATT 60.039 33.333 0.00 0.00 0.00 3.16
3445 3506 7.603784 GCATATTTCTGTTTTCTTCACCCATTT 59.396 33.333 0.00 0.00 0.00 2.32
3446 3507 9.492973 CATATTTCTGTTTTCTTCACCCATTTT 57.507 29.630 0.00 0.00 0.00 1.82
3447 3508 7.790823 ATTTCTGTTTTCTTCACCCATTTTG 57.209 32.000 0.00 0.00 0.00 2.44
3448 3509 4.692228 TCTGTTTTCTTCACCCATTTTGC 58.308 39.130 0.00 0.00 0.00 3.68
3449 3510 4.161189 TCTGTTTTCTTCACCCATTTTGCA 59.839 37.500 0.00 0.00 0.00 4.08
3450 3511 4.836825 TGTTTTCTTCACCCATTTTGCAA 58.163 34.783 0.00 0.00 0.00 4.08
3451 3512 4.633565 TGTTTTCTTCACCCATTTTGCAAC 59.366 37.500 0.00 0.00 0.00 4.17
3452 3513 4.478206 TTTCTTCACCCATTTTGCAACA 57.522 36.364 0.00 0.00 0.00 3.33
3453 3514 4.686191 TTCTTCACCCATTTTGCAACAT 57.314 36.364 0.00 0.00 0.00 2.71
3454 3515 5.798125 TTCTTCACCCATTTTGCAACATA 57.202 34.783 0.00 0.00 0.00 2.29
3455 3516 5.999205 TCTTCACCCATTTTGCAACATAT 57.001 34.783 0.00 0.00 0.00 1.78
3456 3517 7.473735 TTCTTCACCCATTTTGCAACATATA 57.526 32.000 0.00 0.00 0.00 0.86
3457 3518 7.658525 TCTTCACCCATTTTGCAACATATAT 57.341 32.000 0.00 0.00 0.00 0.86
3458 3519 7.490840 TCTTCACCCATTTTGCAACATATATG 58.509 34.615 11.29 11.29 0.00 1.78
3459 3520 7.341512 TCTTCACCCATTTTGCAACATATATGA 59.658 33.333 19.63 0.00 0.00 2.15
3460 3521 7.600231 TCACCCATTTTGCAACATATATGAT 57.400 32.000 19.63 4.54 0.00 2.45
3461 3522 7.660112 TCACCCATTTTGCAACATATATGATC 58.340 34.615 19.63 7.94 0.00 2.92
3462 3523 7.506599 TCACCCATTTTGCAACATATATGATCT 59.493 33.333 19.63 0.68 0.00 2.75
3463 3524 8.145767 CACCCATTTTGCAACATATATGATCTT 58.854 33.333 19.63 0.49 0.00 2.40
3464 3525 8.145767 ACCCATTTTGCAACATATATGATCTTG 58.854 33.333 19.63 13.62 0.00 3.02
3465 3526 8.145767 CCCATTTTGCAACATATATGATCTTGT 58.854 33.333 19.63 0.00 0.00 3.16
3466 3527 9.537192 CCATTTTGCAACATATATGATCTTGTT 57.463 29.630 19.63 0.44 32.76 2.83
3468 3529 8.929827 TTTTGCAACATATATGATCTTGTTGG 57.070 30.769 19.63 0.00 45.62 3.77
3469 3530 7.878547 TTGCAACATATATGATCTTGTTGGA 57.121 32.000 19.63 11.54 45.62 3.53
3470 3531 7.500720 TGCAACATATATGATCTTGTTGGAG 57.499 36.000 19.63 0.00 45.62 3.86
3471 3532 6.487668 TGCAACATATATGATCTTGTTGGAGG 59.512 38.462 19.63 0.00 45.62 4.30
3472 3533 6.712095 GCAACATATATGATCTTGTTGGAGGA 59.288 38.462 19.63 0.00 45.62 3.71
3473 3534 7.308229 GCAACATATATGATCTTGTTGGAGGAC 60.308 40.741 19.63 0.00 45.62 3.85
3474 3535 7.623999 ACATATATGATCTTGTTGGAGGACT 57.376 36.000 19.63 0.00 0.00 3.85
3475 3536 8.038862 ACATATATGATCTTGTTGGAGGACTT 57.961 34.615 19.63 0.00 0.00 3.01
3476 3537 8.153550 ACATATATGATCTTGTTGGAGGACTTC 58.846 37.037 19.63 0.00 0.00 3.01
3477 3538 6.821616 ATATGATCTTGTTGGAGGACTTCT 57.178 37.500 0.00 0.00 0.00 2.85
3478 3539 4.277515 TGATCTTGTTGGAGGACTTCTG 57.722 45.455 0.00 0.00 0.00 3.02
3479 3540 2.550830 TCTTGTTGGAGGACTTCTGC 57.449 50.000 0.00 0.00 0.00 4.26
3480 3541 1.768275 TCTTGTTGGAGGACTTCTGCA 59.232 47.619 0.00 0.00 42.21 4.41
3484 3545 2.205022 TTGGAGGACTTCTGCAATGG 57.795 50.000 0.00 0.00 46.56 3.16
3485 3546 1.361204 TGGAGGACTTCTGCAATGGA 58.639 50.000 0.00 0.00 40.95 3.41
3486 3547 1.280133 TGGAGGACTTCTGCAATGGAG 59.720 52.381 0.00 0.00 40.95 3.86
3487 3548 1.407989 GGAGGACTTCTGCAATGGAGG 60.408 57.143 1.05 0.00 33.66 4.30
3488 3549 1.280421 GAGGACTTCTGCAATGGAGGT 59.720 52.381 1.05 0.00 0.00 3.85
3489 3550 1.004044 AGGACTTCTGCAATGGAGGTG 59.996 52.381 1.05 0.00 0.00 4.00
3490 3551 1.457346 GACTTCTGCAATGGAGGTGG 58.543 55.000 1.05 0.00 0.00 4.61
3491 3552 0.773644 ACTTCTGCAATGGAGGTGGT 59.226 50.000 1.05 0.00 0.00 4.16
3492 3553 1.171308 CTTCTGCAATGGAGGTGGTG 58.829 55.000 1.05 0.00 0.00 4.17
3493 3554 0.478072 TTCTGCAATGGAGGTGGTGT 59.522 50.000 1.05 0.00 0.00 4.16
3494 3555 0.478072 TCTGCAATGGAGGTGGTGTT 59.522 50.000 1.05 0.00 0.00 3.32
3495 3556 0.599558 CTGCAATGGAGGTGGTGTTG 59.400 55.000 0.00 0.00 0.00 3.33
3496 3557 1.290009 GCAATGGAGGTGGTGTTGC 59.710 57.895 0.00 0.00 38.43 4.17
3497 3558 1.462731 GCAATGGAGGTGGTGTTGCA 61.463 55.000 3.76 0.00 43.33 4.08
3498 3559 0.599558 CAATGGAGGTGGTGTTGCAG 59.400 55.000 0.00 0.00 0.00 4.41
3499 3560 0.478072 AATGGAGGTGGTGTTGCAGA 59.522 50.000 0.00 0.00 0.00 4.26
3500 3561 0.478072 ATGGAGGTGGTGTTGCAGAA 59.522 50.000 0.00 0.00 0.00 3.02
3501 3562 0.478072 TGGAGGTGGTGTTGCAGAAT 59.522 50.000 0.00 0.00 0.00 2.40
3502 3563 1.133513 TGGAGGTGGTGTTGCAGAATT 60.134 47.619 0.00 0.00 0.00 2.17
3503 3564 1.963515 GGAGGTGGTGTTGCAGAATTT 59.036 47.619 0.00 0.00 0.00 1.82
3504 3565 2.365293 GGAGGTGGTGTTGCAGAATTTT 59.635 45.455 0.00 0.00 0.00 1.82
3505 3566 3.181466 GGAGGTGGTGTTGCAGAATTTTT 60.181 43.478 0.00 0.00 0.00 1.94
3552 3613 5.484639 CAACGTAAACAATGTTGCATGAG 57.515 39.130 0.00 0.00 45.53 2.90
3553 3614 4.159377 ACGTAAACAATGTTGCATGAGG 57.841 40.909 0.00 0.00 0.00 3.86
3554 3615 3.057596 ACGTAAACAATGTTGCATGAGGG 60.058 43.478 0.00 0.00 0.00 4.30
3555 3616 2.460757 AAACAATGTTGCATGAGGGC 57.539 45.000 0.00 0.00 0.00 5.19
3556 3617 1.636148 AACAATGTTGCATGAGGGCT 58.364 45.000 0.00 0.00 34.04 5.19
3557 3618 1.636148 ACAATGTTGCATGAGGGCTT 58.364 45.000 0.00 0.00 34.04 4.35
3558 3619 1.972795 ACAATGTTGCATGAGGGCTTT 59.027 42.857 0.00 0.00 34.04 3.51
3559 3620 2.369532 ACAATGTTGCATGAGGGCTTTT 59.630 40.909 0.00 0.00 34.04 2.27
3560 3621 2.739913 CAATGTTGCATGAGGGCTTTTG 59.260 45.455 0.00 0.00 34.04 2.44
3561 3622 0.033781 TGTTGCATGAGGGCTTTTGC 59.966 50.000 0.00 0.00 46.64 3.68
3564 3625 1.348366 TTGCATGAGGGCTTTTGCAAT 59.652 42.857 14.10 0.00 46.76 3.56
3565 3626 2.872440 TTGCATGAGGGCTTTTGCAATG 60.872 45.455 14.10 0.00 46.76 2.82
3566 3627 5.381876 TTGCATGAGGGCTTTTGCAATGT 62.382 43.478 14.10 0.00 46.76 2.71
3567 3628 6.793837 TTGCATGAGGGCTTTTGCAATGTT 62.794 41.667 14.10 0.00 46.76 2.71
3581 3642 3.520569 GCAATGTTGCGGGAATTTATGT 58.479 40.909 1.53 0.00 45.11 2.29
3582 3643 3.551485 GCAATGTTGCGGGAATTTATGTC 59.449 43.478 1.53 0.00 45.11 3.06
3583 3644 4.742417 CAATGTTGCGGGAATTTATGTCA 58.258 39.130 0.00 0.00 0.00 3.58
3584 3645 5.350633 CAATGTTGCGGGAATTTATGTCAT 58.649 37.500 0.00 0.00 0.00 3.06
3585 3646 4.368874 TGTTGCGGGAATTTATGTCATG 57.631 40.909 0.00 0.00 0.00 3.07
3586 3647 3.115554 GTTGCGGGAATTTATGTCATGC 58.884 45.455 0.00 0.00 0.00 4.06
3587 3648 1.333308 TGCGGGAATTTATGTCATGCG 59.667 47.619 0.00 0.00 0.00 4.73
3588 3649 1.925946 GCGGGAATTTATGTCATGCGC 60.926 52.381 0.00 0.00 0.00 6.09
3589 3650 1.334960 CGGGAATTTATGTCATGCGCC 60.335 52.381 4.18 0.00 0.00 6.53
3590 3651 1.680735 GGGAATTTATGTCATGCGCCA 59.319 47.619 4.18 0.00 0.00 5.69
3591 3652 2.543653 GGGAATTTATGTCATGCGCCAC 60.544 50.000 4.18 0.00 0.00 5.01
3592 3653 2.543653 GGAATTTATGTCATGCGCCACC 60.544 50.000 4.18 0.00 0.00 4.61
3593 3654 2.057137 ATTTATGTCATGCGCCACCT 57.943 45.000 4.18 0.00 0.00 4.00
3594 3655 1.832883 TTTATGTCATGCGCCACCTT 58.167 45.000 4.18 0.00 0.00 3.50
3595 3656 1.832883 TTATGTCATGCGCCACCTTT 58.167 45.000 4.18 0.00 0.00 3.11
3596 3657 1.832883 TATGTCATGCGCCACCTTTT 58.167 45.000 4.18 0.00 0.00 2.27
3597 3658 0.527565 ATGTCATGCGCCACCTTTTC 59.472 50.000 4.18 0.00 0.00 2.29
3598 3659 0.537143 TGTCATGCGCCACCTTTTCT 60.537 50.000 4.18 0.00 0.00 2.52
3599 3660 0.598065 GTCATGCGCCACCTTTTCTT 59.402 50.000 4.18 0.00 0.00 2.52
3600 3661 0.597568 TCATGCGCCACCTTTTCTTG 59.402 50.000 4.18 0.00 0.00 3.02
3601 3662 1.010419 CATGCGCCACCTTTTCTTGC 61.010 55.000 4.18 0.00 0.00 4.01
3602 3663 1.462731 ATGCGCCACCTTTTCTTGCA 61.463 50.000 4.18 0.00 35.10 4.08
3603 3664 1.067250 GCGCCACCTTTTCTTGCAA 59.933 52.632 0.00 0.00 0.00 4.08
3604 3665 1.215014 GCGCCACCTTTTCTTGCAAC 61.215 55.000 0.00 0.00 0.00 4.17
3605 3666 0.102120 CGCCACCTTTTCTTGCAACA 59.898 50.000 0.00 0.00 0.00 3.33
3606 3667 1.269726 CGCCACCTTTTCTTGCAACAT 60.270 47.619 0.00 0.00 0.00 2.71
3607 3668 2.030363 CGCCACCTTTTCTTGCAACATA 60.030 45.455 0.00 0.00 0.00 2.29
3608 3669 3.551863 CGCCACCTTTTCTTGCAACATAA 60.552 43.478 0.00 0.00 0.00 1.90
3609 3670 3.989817 GCCACCTTTTCTTGCAACATAAG 59.010 43.478 0.00 0.00 0.00 1.73
3610 3671 3.989817 CCACCTTTTCTTGCAACATAAGC 59.010 43.478 0.00 0.00 0.00 3.09
3611 3672 4.501229 CCACCTTTTCTTGCAACATAAGCA 60.501 41.667 0.00 0.00 40.85 3.91
3612 3673 5.232463 CACCTTTTCTTGCAACATAAGCAT 58.768 37.500 0.00 0.00 42.33 3.79
3613 3674 5.119588 CACCTTTTCTTGCAACATAAGCATG 59.880 40.000 0.00 0.00 42.33 4.06
3628 3689 2.000429 GCATGTTGCAAGTGGGATTC 58.000 50.000 0.00 0.00 44.26 2.52
3629 3690 1.547372 GCATGTTGCAAGTGGGATTCT 59.453 47.619 0.00 0.00 44.26 2.40
3630 3691 2.673043 GCATGTTGCAAGTGGGATTCTG 60.673 50.000 0.00 0.00 44.26 3.02
3631 3692 0.961019 TGTTGCAAGTGGGATTCTGC 59.039 50.000 0.00 0.00 0.00 4.26
3632 3693 0.961019 GTTGCAAGTGGGATTCTGCA 59.039 50.000 0.00 0.00 0.00 4.41
3633 3694 1.340889 GTTGCAAGTGGGATTCTGCAA 59.659 47.619 0.00 4.32 39.51 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.032620 CTAGCCGTCCAACACCTATCT 58.967 52.381 0.00 0.00 0.00 1.98
43 44 2.186903 CCGGCACTACAATCCGCT 59.813 61.111 0.00 0.00 41.68 5.52
46 47 2.516225 GCCCCGGCACTACAATCC 60.516 66.667 0.00 0.00 41.49 3.01
116 117 3.751175 CACACATCCCGACAAGTTATGTT 59.249 43.478 0.00 0.00 44.12 2.71
122 123 1.946768 CAAACACACATCCCGACAAGT 59.053 47.619 0.00 0.00 0.00 3.16
127 128 0.948623 CGAGCAAACACACATCCCGA 60.949 55.000 0.00 0.00 0.00 5.14
128 129 1.497278 CGAGCAAACACACATCCCG 59.503 57.895 0.00 0.00 0.00 5.14
196 197 1.841556 AACTCCTCCTCGGGTGCAA 60.842 57.895 0.00 0.00 0.00 4.08
203 204 1.674221 CCTCAAAGCAACTCCTCCTCG 60.674 57.143 0.00 0.00 0.00 4.63
204 205 1.625818 TCCTCAAAGCAACTCCTCCTC 59.374 52.381 0.00 0.00 0.00 3.71
205 206 1.627834 CTCCTCAAAGCAACTCCTCCT 59.372 52.381 0.00 0.00 0.00 3.69
206 207 1.339535 CCTCCTCAAAGCAACTCCTCC 60.340 57.143 0.00 0.00 0.00 4.30
207 208 1.625818 TCCTCCTCAAAGCAACTCCTC 59.374 52.381 0.00 0.00 0.00 3.71
208 209 1.627834 CTCCTCCTCAAAGCAACTCCT 59.372 52.381 0.00 0.00 0.00 3.69
209 210 1.349357 ACTCCTCCTCAAAGCAACTCC 59.651 52.381 0.00 0.00 0.00 3.85
210 211 2.810852 CAACTCCTCCTCAAAGCAACTC 59.189 50.000 0.00 0.00 0.00 3.01
211 212 2.856222 CAACTCCTCCTCAAAGCAACT 58.144 47.619 0.00 0.00 0.00 3.16
212 213 1.268079 GCAACTCCTCCTCAAAGCAAC 59.732 52.381 0.00 0.00 0.00 4.17
213 214 1.143684 AGCAACTCCTCCTCAAAGCAA 59.856 47.619 0.00 0.00 0.00 3.91
214 215 0.767375 AGCAACTCCTCCTCAAAGCA 59.233 50.000 0.00 0.00 0.00 3.91
215 216 1.809547 GAAGCAACTCCTCCTCAAAGC 59.190 52.381 0.00 0.00 0.00 3.51
216 217 3.131709 TGAAGCAACTCCTCCTCAAAG 57.868 47.619 0.00 0.00 0.00 2.77
217 218 3.576078 TTGAAGCAACTCCTCCTCAAA 57.424 42.857 0.00 0.00 0.00 2.69
218 219 3.072915 TCATTGAAGCAACTCCTCCTCAA 59.927 43.478 0.00 0.00 0.00 3.02
237 238 2.306805 TGTGCTCTTGGAAGACCATCAT 59.693 45.455 0.00 0.00 46.34 2.45
240 241 2.040813 ACATGTGCTCTTGGAAGACCAT 59.959 45.455 0.00 0.00 46.34 3.55
259 260 0.538746 TCTCTGTCCACCTGCGTACA 60.539 55.000 0.00 0.00 0.00 2.90
332 333 1.282157 GTGGCCCTATTGAAGACCACT 59.718 52.381 0.00 0.00 43.57 4.00
350 351 3.116300 CACTACGCTAACTATGGCAGTG 58.884 50.000 0.00 0.00 37.63 3.66
353 354 2.218953 GCACTACGCTAACTATGGCA 57.781 50.000 0.00 0.00 37.77 4.92
386 387 4.070681 ACTCTAGTTGCCCCCTTAGTTA 57.929 45.455 0.00 0.00 0.00 2.24
390 391 3.771071 AGTACTCTAGTTGCCCCCTTA 57.229 47.619 0.00 0.00 0.00 2.69
392 393 2.313945 TGTAGTACTCTAGTTGCCCCCT 59.686 50.000 0.00 0.00 0.00 4.79
431 432 7.941790 ACCTGCATTAAAAATTACCCAAAACAT 59.058 29.630 0.00 0.00 0.00 2.71
455 456 0.393820 TACCGTTCAACCTGTCCACC 59.606 55.000 0.00 0.00 0.00 4.61
466 467 2.079158 CGGACTACTCACTACCGTTCA 58.921 52.381 0.00 0.00 38.97 3.18
469 470 0.321919 TGCGGACTACTCACTACCGT 60.322 55.000 0.00 0.00 44.48 4.83
503 504 2.457813 ACATATGCATGGAGGCCAAA 57.542 45.000 10.16 0.00 36.95 3.28
523 524 2.677003 GGCTACAACGCGTGCATGT 61.677 57.895 14.98 16.93 0.00 3.21
562 565 2.738964 GCGTAGAAGGAAAGCCGAGAAT 60.739 50.000 0.00 0.00 39.96 2.40
581 584 1.000274 TCGTGGGAGACATATCATGCG 60.000 52.381 0.00 0.00 0.00 4.73
590 595 0.629596 AGGATAGGTCGTGGGAGACA 59.370 55.000 0.00 0.00 42.62 3.41
653 663 8.699283 AATCACGACTATACTAAGTTGTTTCC 57.301 34.615 0.00 0.00 41.29 3.13
654 664 9.570488 AGAATCACGACTATACTAAGTTGTTTC 57.430 33.333 0.00 0.00 41.29 2.78
664 674 9.121658 TCTGATAACAAGAATCACGACTATACT 57.878 33.333 0.00 0.00 30.38 2.12
665 675 9.900710 ATCTGATAACAAGAATCACGACTATAC 57.099 33.333 0.00 0.00 30.38 1.47
670 680 9.088512 AGTTTATCTGATAACAAGAATCACGAC 57.911 33.333 9.54 1.87 30.38 4.34
673 683 8.887717 AGCAGTTTATCTGATAACAAGAATCAC 58.112 33.333 9.54 3.60 46.27 3.06
757 775 0.539669 TCTCGAAGCACCTCCTCACA 60.540 55.000 0.00 0.00 0.00 3.58
766 784 2.723010 CGCAACAAAGATCTCGAAGCAC 60.723 50.000 0.00 0.00 0.00 4.40
772 790 2.223144 TGGTTTCGCAACAAAGATCTCG 59.777 45.455 0.00 0.00 34.15 4.04
784 802 4.555709 ACGGCAGGTGGTTTCGCA 62.556 61.111 0.00 0.00 0.00 5.10
929 960 3.797039 CTCCTCTAAATTGTGATGCGGA 58.203 45.455 0.00 0.00 0.00 5.54
951 982 2.196229 AGATCGGTCCGAGGAGGG 59.804 66.667 20.50 0.00 39.91 4.30
1279 1310 4.172512 AGGCAGGCAGATCGGCAG 62.173 66.667 19.63 12.01 44.47 4.85
1315 1346 2.819608 GCAGCTGAAGTCATTTAACCCA 59.180 45.455 20.43 0.00 0.00 4.51
1428 1461 2.104331 CGATCGGGCAAGTACGCT 59.896 61.111 7.38 0.00 0.00 5.07
1436 1469 3.214123 CGTACCTCCGATCGGGCA 61.214 66.667 32.79 14.81 34.94 5.36
1520 1553 1.694169 ATCTTGCATCTCCCCCGGT 60.694 57.895 0.00 0.00 0.00 5.28
1684 1722 3.251729 GTCACATCACATTGCTTCAGTGT 59.748 43.478 0.00 0.00 34.73 3.55
2083 2127 0.909623 GTAGAGCTAGGGCCAACCAA 59.090 55.000 6.18 0.00 43.89 3.67
2316 2367 5.560966 ACACTTTTGATTCGTCTGTTGTT 57.439 34.783 0.00 0.00 0.00 2.83
2323 2374 6.721321 TCAAAACCTACACTTTTGATTCGTC 58.279 36.000 2.87 0.00 40.87 4.20
2345 2396 6.263842 GGATTTGTCATATGCCTCAAGATTCA 59.736 38.462 0.00 0.00 0.00 2.57
2356 2407 5.277538 GGAGTTCTTCGGATTTGTCATATGC 60.278 44.000 0.00 0.00 0.00 3.14
2370 2421 3.477530 AGAAACAAAGGGGAGTTCTTCG 58.522 45.455 0.00 0.00 0.00 3.79
2556 2607 0.827925 TCTTGAGCTCCGTGTCCAGT 60.828 55.000 12.15 0.00 0.00 4.00
2645 2696 0.249120 CATCAGCCCAACCGTCTACA 59.751 55.000 0.00 0.00 0.00 2.74
2747 2804 0.793861 GTAAGCAAACATCGTCGCCA 59.206 50.000 0.00 0.00 0.00 5.69
2790 2847 1.095228 GCCGAAAAGGGCGATGATGA 61.095 55.000 0.00 0.00 44.40 2.92
2816 2873 5.741011 ACAATCTGAAGAAGCCCGTAAATA 58.259 37.500 0.00 0.00 0.00 1.40
2912 2969 3.122297 CAAATCAGCTGGCGTTTCAAAA 58.878 40.909 15.13 0.00 0.00 2.44
2973 3030 6.741448 AAAAACGACGACCAATAATTGTTG 57.259 33.333 7.89 7.89 0.00 3.33
3004 3061 7.946207 TCACCTAAGATCATCAGACTCATTAC 58.054 38.462 0.00 0.00 0.00 1.89
3005 3062 7.255766 GCTCACCTAAGATCATCAGACTCATTA 60.256 40.741 0.00 0.00 0.00 1.90
3011 3068 4.662468 TGCTCACCTAAGATCATCAGAC 57.338 45.455 0.00 0.00 0.00 3.51
3101 3158 2.735134 GCGAACCTCTACACGTCAAAAT 59.265 45.455 0.00 0.00 0.00 1.82
3111 3169 2.014857 GAAATTGGGGCGAACCTCTAC 58.985 52.381 0.00 0.00 37.32 2.59
3112 3170 1.631388 TGAAATTGGGGCGAACCTCTA 59.369 47.619 0.00 0.00 37.32 2.43
3115 3173 1.185315 CATGAAATTGGGGCGAACCT 58.815 50.000 0.00 0.00 40.03 3.50
3116 3174 0.894835 ACATGAAATTGGGGCGAACC 59.105 50.000 0.00 0.00 39.11 3.62
3117 3175 2.288763 ACAACATGAAATTGGGGCGAAC 60.289 45.455 0.00 0.00 0.00 3.95
3118 3176 1.967066 ACAACATGAAATTGGGGCGAA 59.033 42.857 0.00 0.00 0.00 4.70
3119 3177 1.626686 ACAACATGAAATTGGGGCGA 58.373 45.000 0.00 0.00 0.00 5.54
3121 3179 2.302733 AGGAACAACATGAAATTGGGGC 59.697 45.455 0.00 0.00 0.00 5.80
3140 3198 9.149225 GTGAACTATCATAATCATCAGCTAAGG 57.851 37.037 0.00 0.00 38.01 2.69
3154 3212 9.832445 GGAACCTTCAAATAGTGAACTATCATA 57.168 33.333 3.51 0.00 41.47 2.15
3218 3279 9.113838 GTTTACAATTCATCTACCATCTGATGT 57.886 33.333 15.95 7.30 40.46 3.06
3223 3284 9.685276 TTGATGTTTACAATTCATCTACCATCT 57.315 29.630 5.86 0.00 38.78 2.90
3240 3301 1.948611 GCAGGAGGCGGTTGATGTTTA 60.949 52.381 0.00 0.00 0.00 2.01
3254 3315 1.069022 CACAATTCAACGGTGCAGGAG 60.069 52.381 0.00 0.00 0.00 3.69
3264 3325 4.047822 TGAAATTCGTGCCACAATTCAAC 58.952 39.130 0.00 0.00 0.00 3.18
3268 3329 4.052159 TGTTGAAATTCGTGCCACAATT 57.948 36.364 0.00 0.00 0.00 2.32
3273 3334 2.028130 ACCTTGTTGAAATTCGTGCCA 58.972 42.857 0.00 0.00 0.00 4.92
3286 3347 0.311790 CTGCGCAACATCACCTTGTT 59.688 50.000 13.05 0.00 40.39 2.83
3287 3348 1.951510 CTGCGCAACATCACCTTGT 59.048 52.632 13.05 0.00 0.00 3.16
3288 3349 1.443194 GCTGCGCAACATCACCTTG 60.443 57.895 13.05 0.00 0.00 3.61
3289 3350 1.580845 GAGCTGCGCAACATCACCTT 61.581 55.000 13.05 0.00 0.00 3.50
3290 3351 2.033141 AGCTGCGCAACATCACCT 59.967 55.556 13.05 0.00 0.00 4.00
3291 3352 2.482374 GAGCTGCGCAACATCACC 59.518 61.111 13.05 0.00 0.00 4.02
3292 3353 2.097160 CGAGCTGCGCAACATCAC 59.903 61.111 13.05 0.00 0.00 3.06
3302 3363 1.678269 CGTGTTGTAGAGCGAGCTGC 61.678 60.000 0.84 0.00 46.98 5.25
3303 3364 0.109735 TCGTGTTGTAGAGCGAGCTG 60.110 55.000 0.84 0.00 0.00 4.24
3304 3365 0.596577 TTCGTGTTGTAGAGCGAGCT 59.403 50.000 0.00 0.00 34.78 4.09
3305 3366 1.124477 GTTTCGTGTTGTAGAGCGAGC 59.876 52.381 0.00 0.00 34.78 5.03
3306 3367 1.719780 GGTTTCGTGTTGTAGAGCGAG 59.280 52.381 0.00 0.00 34.78 5.03
3307 3368 1.067364 TGGTTTCGTGTTGTAGAGCGA 59.933 47.619 0.00 0.00 0.00 4.93
3308 3369 1.191647 GTGGTTTCGTGTTGTAGAGCG 59.808 52.381 0.00 0.00 0.00 5.03
3309 3370 1.529865 GGTGGTTTCGTGTTGTAGAGC 59.470 52.381 0.00 0.00 0.00 4.09
3310 3371 1.790623 CGGTGGTTTCGTGTTGTAGAG 59.209 52.381 0.00 0.00 0.00 2.43
3311 3372 1.408340 TCGGTGGTTTCGTGTTGTAGA 59.592 47.619 0.00 0.00 0.00 2.59
3312 3373 1.855513 TCGGTGGTTTCGTGTTGTAG 58.144 50.000 0.00 0.00 0.00 2.74
3313 3374 2.203401 CTTCGGTGGTTTCGTGTTGTA 58.797 47.619 0.00 0.00 0.00 2.41
3314 3375 1.011333 CTTCGGTGGTTTCGTGTTGT 58.989 50.000 0.00 0.00 0.00 3.32
3315 3376 1.011333 ACTTCGGTGGTTTCGTGTTG 58.989 50.000 0.00 0.00 0.00 3.33
3316 3377 1.011333 CACTTCGGTGGTTTCGTGTT 58.989 50.000 0.00 0.00 41.88 3.32
3317 3378 1.676615 AACACTTCGGTGGTTTCGTGT 60.677 47.619 1.29 0.00 44.46 4.49
3318 3379 1.011333 AACACTTCGGTGGTTTCGTG 58.989 50.000 1.29 0.00 44.46 4.35
3319 3380 2.600470 TAACACTTCGGTGGTTTCGT 57.400 45.000 1.29 0.00 44.46 3.85
3320 3381 4.477302 AAATAACACTTCGGTGGTTTCG 57.523 40.909 1.29 0.00 44.46 3.46
3321 3382 5.051307 GCAAAAATAACACTTCGGTGGTTTC 60.051 40.000 1.29 0.00 44.46 2.78
3322 3383 4.806775 GCAAAAATAACACTTCGGTGGTTT 59.193 37.500 1.29 0.00 44.46 3.27
3323 3384 4.098807 AGCAAAAATAACACTTCGGTGGTT 59.901 37.500 1.29 0.00 44.46 3.67
3327 3388 3.810941 TCGAGCAAAAATAACACTTCGGT 59.189 39.130 0.00 0.00 0.00 4.69
3328 3389 4.398549 TCGAGCAAAAATAACACTTCGG 57.601 40.909 0.00 0.00 0.00 4.30
3329 3390 5.679355 TGTTTCGAGCAAAAATAACACTTCG 59.321 36.000 0.00 0.00 0.00 3.79
3330 3391 7.444558 TTGTTTCGAGCAAAAATAACACTTC 57.555 32.000 2.60 0.00 0.00 3.01
3331 3392 7.820044 TTTGTTTCGAGCAAAAATAACACTT 57.180 28.000 12.71 0.00 33.51 3.16
3332 3393 7.820044 TTTTGTTTCGAGCAAAAATAACACT 57.180 28.000 20.26 0.00 41.18 3.55
3339 3400 8.591312 CAATAGAGTTTTTGTTTCGAGCAAAAA 58.409 29.630 25.27 25.27 46.79 1.94
3340 3401 7.757624 ACAATAGAGTTTTTGTTTCGAGCAAAA 59.242 29.630 19.27 19.27 42.03 2.44
3341 3402 7.219917 CACAATAGAGTTTTTGTTTCGAGCAAA 59.780 33.333 11.53 11.53 33.93 3.68
3342 3403 6.690957 CACAATAGAGTTTTTGTTTCGAGCAA 59.309 34.615 1.13 1.13 33.93 3.91
3343 3404 6.183360 ACACAATAGAGTTTTTGTTTCGAGCA 60.183 34.615 0.00 0.00 33.93 4.26
3344 3405 6.199393 ACACAATAGAGTTTTTGTTTCGAGC 58.801 36.000 0.00 0.00 33.93 5.03
3345 3406 7.376072 GGAACACAATAGAGTTTTTGTTTCGAG 59.624 37.037 0.00 0.00 33.93 4.04
3346 3407 7.190871 GGAACACAATAGAGTTTTTGTTTCGA 58.809 34.615 0.00 0.00 33.93 3.71
3347 3408 6.140108 CGGAACACAATAGAGTTTTTGTTTCG 59.860 38.462 3.41 3.41 39.00 3.46
3348 3409 7.165318 GTCGGAACACAATAGAGTTTTTGTTTC 59.835 37.037 0.00 0.00 33.93 2.78
3349 3410 6.970613 GTCGGAACACAATAGAGTTTTTGTTT 59.029 34.615 0.00 0.00 33.93 2.83
3350 3411 6.094325 TGTCGGAACACAATAGAGTTTTTGTT 59.906 34.615 0.00 0.00 33.93 2.83
3351 3412 5.587043 TGTCGGAACACAATAGAGTTTTTGT 59.413 36.000 0.00 0.00 36.53 2.83
3352 3413 6.055231 TGTCGGAACACAATAGAGTTTTTG 57.945 37.500 0.00 0.00 0.00 2.44
3353 3414 6.877611 ATGTCGGAACACAATAGAGTTTTT 57.122 33.333 0.00 0.00 38.48 1.94
3354 3415 7.159372 ACTATGTCGGAACACAATAGAGTTTT 58.841 34.615 0.00 0.00 38.48 2.43
3355 3416 6.698380 ACTATGTCGGAACACAATAGAGTTT 58.302 36.000 0.00 0.00 38.48 2.66
3356 3417 6.282199 ACTATGTCGGAACACAATAGAGTT 57.718 37.500 0.00 0.00 38.48 3.01
3357 3418 5.916661 ACTATGTCGGAACACAATAGAGT 57.083 39.130 0.00 0.00 38.48 3.24
3358 3419 6.565234 AGAACTATGTCGGAACACAATAGAG 58.435 40.000 0.00 0.00 38.48 2.43
3359 3420 6.525578 AGAACTATGTCGGAACACAATAGA 57.474 37.500 0.00 0.00 38.48 1.98
3360 3421 6.590292 ACAAGAACTATGTCGGAACACAATAG 59.410 38.462 0.00 0.00 38.48 1.73
3361 3422 6.460781 ACAAGAACTATGTCGGAACACAATA 58.539 36.000 0.00 0.00 38.48 1.90
3362 3423 5.305585 ACAAGAACTATGTCGGAACACAAT 58.694 37.500 0.00 0.00 38.48 2.71
3363 3424 4.699637 ACAAGAACTATGTCGGAACACAA 58.300 39.130 0.00 0.00 38.48 3.33
3364 3425 4.330944 ACAAGAACTATGTCGGAACACA 57.669 40.909 0.00 0.00 38.48 3.72
3365 3426 4.610680 GCAACAAGAACTATGTCGGAACAC 60.611 45.833 0.00 0.00 38.48 3.32
3366 3427 3.496884 GCAACAAGAACTATGTCGGAACA 59.503 43.478 0.00 0.00 40.38 3.18
3367 3428 3.496884 TGCAACAAGAACTATGTCGGAAC 59.503 43.478 0.00 0.00 0.00 3.62
3368 3429 3.734463 TGCAACAAGAACTATGTCGGAA 58.266 40.909 0.00 0.00 0.00 4.30
3369 3430 3.006430 TCTGCAACAAGAACTATGTCGGA 59.994 43.478 0.00 0.00 0.00 4.55
3370 3431 3.325870 TCTGCAACAAGAACTATGTCGG 58.674 45.455 0.00 0.00 0.00 4.79
3371 3432 4.990543 TTCTGCAACAAGAACTATGTCG 57.009 40.909 0.00 0.00 31.19 4.35
3372 3433 9.846248 AAATATTTCTGCAACAAGAACTATGTC 57.154 29.630 0.00 0.00 35.92 3.06
3373 3434 9.630098 CAAATATTTCTGCAACAAGAACTATGT 57.370 29.630 0.00 0.00 35.92 2.29
3374 3435 9.079833 CCAAATATTTCTGCAACAAGAACTATG 57.920 33.333 0.00 0.00 35.92 2.23
3375 3436 9.023962 TCCAAATATTTCTGCAACAAGAACTAT 57.976 29.630 0.00 0.00 35.92 2.12
3376 3437 8.402798 TCCAAATATTTCTGCAACAAGAACTA 57.597 30.769 0.00 0.00 35.92 2.24
3377 3438 7.288810 TCCAAATATTTCTGCAACAAGAACT 57.711 32.000 0.00 0.00 35.92 3.01
3378 3439 7.867403 TCTTCCAAATATTTCTGCAACAAGAAC 59.133 33.333 0.00 0.00 35.92 3.01
3379 3440 7.950512 TCTTCCAAATATTTCTGCAACAAGAA 58.049 30.769 0.00 0.00 34.36 2.52
3380 3441 7.448161 TCTCTTCCAAATATTTCTGCAACAAGA 59.552 33.333 0.00 0.00 0.00 3.02
3381 3442 7.596494 TCTCTTCCAAATATTTCTGCAACAAG 58.404 34.615 0.00 0.00 0.00 3.16
3382 3443 7.309377 CCTCTCTTCCAAATATTTCTGCAACAA 60.309 37.037 0.00 0.00 0.00 2.83
3383 3444 6.151648 CCTCTCTTCCAAATATTTCTGCAACA 59.848 38.462 0.00 0.00 0.00 3.33
3384 3445 6.151817 ACCTCTCTTCCAAATATTTCTGCAAC 59.848 38.462 0.00 0.00 0.00 4.17
3385 3446 6.151648 CACCTCTCTTCCAAATATTTCTGCAA 59.848 38.462 0.00 0.00 0.00 4.08
3386 3447 5.649395 CACCTCTCTTCCAAATATTTCTGCA 59.351 40.000 0.00 0.00 0.00 4.41
3387 3448 5.067023 CCACCTCTCTTCCAAATATTTCTGC 59.933 44.000 0.00 0.00 0.00 4.26
3388 3449 6.094603 CACCACCTCTCTTCCAAATATTTCTG 59.905 42.308 0.00 0.00 0.00 3.02
3389 3450 6.183347 CACCACCTCTCTTCCAAATATTTCT 58.817 40.000 0.00 0.00 0.00 2.52
3390 3451 5.946377 ACACCACCTCTCTTCCAAATATTTC 59.054 40.000 0.00 0.00 0.00 2.17
3391 3452 5.892348 ACACCACCTCTCTTCCAAATATTT 58.108 37.500 0.00 0.00 0.00 1.40
3392 3453 5.520748 ACACCACCTCTCTTCCAAATATT 57.479 39.130 0.00 0.00 0.00 1.28
3393 3454 5.256474 CAACACCACCTCTCTTCCAAATAT 58.744 41.667 0.00 0.00 0.00 1.28
3394 3455 4.651778 CAACACCACCTCTCTTCCAAATA 58.348 43.478 0.00 0.00 0.00 1.40
3395 3456 3.490348 CAACACCACCTCTCTTCCAAAT 58.510 45.455 0.00 0.00 0.00 2.32
3396 3457 2.930950 CAACACCACCTCTCTTCCAAA 58.069 47.619 0.00 0.00 0.00 3.28
3397 3458 1.476833 GCAACACCACCTCTCTTCCAA 60.477 52.381 0.00 0.00 0.00 3.53
3398 3459 0.108585 GCAACACCACCTCTCTTCCA 59.891 55.000 0.00 0.00 0.00 3.53
3399 3460 0.108585 TGCAACACCACCTCTCTTCC 59.891 55.000 0.00 0.00 0.00 3.46
3400 3461 1.517242 CTGCAACACCACCTCTCTTC 58.483 55.000 0.00 0.00 0.00 2.87
3401 3462 0.536006 GCTGCAACACCACCTCTCTT 60.536 55.000 0.00 0.00 0.00 2.85
3402 3463 1.072159 GCTGCAACACCACCTCTCT 59.928 57.895 0.00 0.00 0.00 3.10
3403 3464 0.607489 ATGCTGCAACACCACCTCTC 60.607 55.000 6.36 0.00 0.00 3.20
3404 3465 0.692476 TATGCTGCAACACCACCTCT 59.308 50.000 6.36 0.00 0.00 3.69
3405 3466 1.755179 ATATGCTGCAACACCACCTC 58.245 50.000 6.36 0.00 0.00 3.85
3406 3467 2.220653 AATATGCTGCAACACCACCT 57.779 45.000 6.36 0.00 0.00 4.00
3407 3468 2.493278 AGAAATATGCTGCAACACCACC 59.507 45.455 6.36 0.00 0.00 4.61
3408 3469 3.057315 ACAGAAATATGCTGCAACACCAC 60.057 43.478 6.36 0.00 36.86 4.16
3409 3470 3.156293 ACAGAAATATGCTGCAACACCA 58.844 40.909 6.36 0.00 36.86 4.17
3410 3471 3.855689 ACAGAAATATGCTGCAACACC 57.144 42.857 6.36 0.00 36.86 4.16
3411 3472 5.922544 AGAAAACAGAAATATGCTGCAACAC 59.077 36.000 6.36 0.00 36.86 3.32
3412 3473 6.088016 AGAAAACAGAAATATGCTGCAACA 57.912 33.333 6.36 0.00 36.86 3.33
3413 3474 6.642131 TGAAGAAAACAGAAATATGCTGCAAC 59.358 34.615 6.36 0.00 36.86 4.17
3414 3475 6.642131 GTGAAGAAAACAGAAATATGCTGCAA 59.358 34.615 6.36 0.00 36.86 4.08
3415 3476 6.151691 GTGAAGAAAACAGAAATATGCTGCA 58.848 36.000 4.13 4.13 36.86 4.41
3416 3477 5.574443 GGTGAAGAAAACAGAAATATGCTGC 59.426 40.000 5.91 0.00 36.86 5.25
3417 3478 6.095377 GGGTGAAGAAAACAGAAATATGCTG 58.905 40.000 4.72 4.72 39.26 4.41
3418 3479 5.774690 TGGGTGAAGAAAACAGAAATATGCT 59.225 36.000 0.00 0.00 0.00 3.79
3419 3480 6.024552 TGGGTGAAGAAAACAGAAATATGC 57.975 37.500 0.00 0.00 0.00 3.14
3420 3481 9.492973 AAAATGGGTGAAGAAAACAGAAATATG 57.507 29.630 0.00 0.00 0.00 1.78
3421 3482 9.492973 CAAAATGGGTGAAGAAAACAGAAATAT 57.507 29.630 0.00 0.00 0.00 1.28
3422 3483 7.440856 GCAAAATGGGTGAAGAAAACAGAAATA 59.559 33.333 0.00 0.00 0.00 1.40
3423 3484 6.260714 GCAAAATGGGTGAAGAAAACAGAAAT 59.739 34.615 0.00 0.00 0.00 2.17
3424 3485 5.584251 GCAAAATGGGTGAAGAAAACAGAAA 59.416 36.000 0.00 0.00 0.00 2.52
3425 3486 5.115480 GCAAAATGGGTGAAGAAAACAGAA 58.885 37.500 0.00 0.00 0.00 3.02
3426 3487 4.161189 TGCAAAATGGGTGAAGAAAACAGA 59.839 37.500 0.00 0.00 0.00 3.41
3427 3488 4.440880 TGCAAAATGGGTGAAGAAAACAG 58.559 39.130 0.00 0.00 0.00 3.16
3428 3489 4.478206 TGCAAAATGGGTGAAGAAAACA 57.522 36.364 0.00 0.00 0.00 2.83
3429 3490 4.633565 TGTTGCAAAATGGGTGAAGAAAAC 59.366 37.500 0.00 0.00 0.00 2.43
3430 3491 4.836825 TGTTGCAAAATGGGTGAAGAAAA 58.163 34.783 0.00 0.00 0.00 2.29
3431 3492 4.478206 TGTTGCAAAATGGGTGAAGAAA 57.522 36.364 0.00 0.00 0.00 2.52
3432 3493 4.686191 ATGTTGCAAAATGGGTGAAGAA 57.314 36.364 0.00 0.00 0.00 2.52
3433 3494 5.999205 ATATGTTGCAAAATGGGTGAAGA 57.001 34.783 12.62 0.00 0.00 2.87
3434 3495 7.490840 TCATATATGTTGCAAAATGGGTGAAG 58.509 34.615 12.62 0.00 0.00 3.02
3435 3496 7.415592 TCATATATGTTGCAAAATGGGTGAA 57.584 32.000 12.62 0.00 0.00 3.18
3436 3497 7.506599 AGATCATATATGTTGCAAAATGGGTGA 59.493 33.333 12.62 12.39 0.00 4.02
3437 3498 7.663827 AGATCATATATGTTGCAAAATGGGTG 58.336 34.615 12.62 7.78 0.00 4.61
3438 3499 7.844493 AGATCATATATGTTGCAAAATGGGT 57.156 32.000 12.62 1.26 0.00 4.51
3439 3500 8.145767 ACAAGATCATATATGTTGCAAAATGGG 58.854 33.333 12.62 0.00 0.00 4.00
3440 3501 9.537192 AACAAGATCATATATGTTGCAAAATGG 57.463 29.630 12.62 0.00 34.88 3.16
3442 3503 9.537192 CCAACAAGATCATATATGTTGCAAAAT 57.463 29.630 12.42 7.40 46.96 1.82
3443 3504 8.747471 TCCAACAAGATCATATATGTTGCAAAA 58.253 29.630 12.42 0.00 46.96 2.44
3444 3505 8.291191 TCCAACAAGATCATATATGTTGCAAA 57.709 30.769 12.42 0.00 46.96 3.68
3445 3506 7.013559 CCTCCAACAAGATCATATATGTTGCAA 59.986 37.037 12.42 0.00 46.96 4.08
3446 3507 6.487668 CCTCCAACAAGATCATATATGTTGCA 59.512 38.462 12.42 0.00 46.96 4.08
3447 3508 6.712095 TCCTCCAACAAGATCATATATGTTGC 59.288 38.462 12.42 3.84 46.96 4.17
3449 3510 8.038862 AGTCCTCCAACAAGATCATATATGTT 57.961 34.615 12.42 4.29 36.49 2.71
3450 3511 7.623999 AGTCCTCCAACAAGATCATATATGT 57.376 36.000 12.42 0.44 0.00 2.29
3451 3512 8.373981 AGAAGTCCTCCAACAAGATCATATATG 58.626 37.037 6.36 6.36 0.00 1.78
3452 3513 8.373981 CAGAAGTCCTCCAACAAGATCATATAT 58.626 37.037 0.00 0.00 0.00 0.86
3453 3514 7.687837 GCAGAAGTCCTCCAACAAGATCATATA 60.688 40.741 0.00 0.00 0.00 0.86
3454 3515 6.590068 CAGAAGTCCTCCAACAAGATCATAT 58.410 40.000 0.00 0.00 0.00 1.78
3455 3516 5.627735 GCAGAAGTCCTCCAACAAGATCATA 60.628 44.000 0.00 0.00 0.00 2.15
3456 3517 4.841422 CAGAAGTCCTCCAACAAGATCAT 58.159 43.478 0.00 0.00 0.00 2.45
3457 3518 3.557898 GCAGAAGTCCTCCAACAAGATCA 60.558 47.826 0.00 0.00 0.00 2.92
3458 3519 3.006247 GCAGAAGTCCTCCAACAAGATC 58.994 50.000 0.00 0.00 0.00 2.75
3459 3520 2.373169 TGCAGAAGTCCTCCAACAAGAT 59.627 45.455 0.00 0.00 0.00 2.40
3460 3521 1.768275 TGCAGAAGTCCTCCAACAAGA 59.232 47.619 0.00 0.00 0.00 3.02
3461 3522 2.260844 TGCAGAAGTCCTCCAACAAG 57.739 50.000 0.00 0.00 0.00 3.16
3462 3523 2.727123 TTGCAGAAGTCCTCCAACAA 57.273 45.000 0.00 0.00 0.00 2.83
3463 3524 2.507484 CATTGCAGAAGTCCTCCAACA 58.493 47.619 0.00 0.00 0.00 3.33
3464 3525 1.815003 CCATTGCAGAAGTCCTCCAAC 59.185 52.381 0.00 0.00 0.00 3.77
3465 3526 1.704628 TCCATTGCAGAAGTCCTCCAA 59.295 47.619 0.00 0.00 0.00 3.53
3466 3527 1.280133 CTCCATTGCAGAAGTCCTCCA 59.720 52.381 0.00 0.00 0.00 3.86
3467 3528 1.407989 CCTCCATTGCAGAAGTCCTCC 60.408 57.143 0.00 0.00 0.00 4.30
3468 3529 1.280421 ACCTCCATTGCAGAAGTCCTC 59.720 52.381 0.00 0.00 0.00 3.71
3469 3530 1.004044 CACCTCCATTGCAGAAGTCCT 59.996 52.381 0.00 0.00 0.00 3.85
3470 3531 1.457346 CACCTCCATTGCAGAAGTCC 58.543 55.000 0.00 0.00 0.00 3.85
3471 3532 1.271597 ACCACCTCCATTGCAGAAGTC 60.272 52.381 0.00 0.00 0.00 3.01
3472 3533 0.773644 ACCACCTCCATTGCAGAAGT 59.226 50.000 0.00 0.00 0.00 3.01
3473 3534 1.171308 CACCACCTCCATTGCAGAAG 58.829 55.000 0.00 0.00 0.00 2.85
3474 3535 0.478072 ACACCACCTCCATTGCAGAA 59.522 50.000 0.00 0.00 0.00 3.02
3475 3536 0.478072 AACACCACCTCCATTGCAGA 59.522 50.000 0.00 0.00 0.00 4.26
3476 3537 0.599558 CAACACCACCTCCATTGCAG 59.400 55.000 0.00 0.00 0.00 4.41
3477 3538 1.462731 GCAACACCACCTCCATTGCA 61.463 55.000 2.54 0.00 44.01 4.08
3478 3539 1.290009 GCAACACCACCTCCATTGC 59.710 57.895 0.00 0.00 38.93 3.56
3479 3540 0.599558 CTGCAACACCACCTCCATTG 59.400 55.000 0.00 0.00 0.00 2.82
3480 3541 0.478072 TCTGCAACACCACCTCCATT 59.522 50.000 0.00 0.00 0.00 3.16
3481 3542 0.478072 TTCTGCAACACCACCTCCAT 59.522 50.000 0.00 0.00 0.00 3.41
3482 3543 0.478072 ATTCTGCAACACCACCTCCA 59.522 50.000 0.00 0.00 0.00 3.86
3483 3544 1.620822 AATTCTGCAACACCACCTCC 58.379 50.000 0.00 0.00 0.00 4.30
3484 3545 3.733443 AAAATTCTGCAACACCACCTC 57.267 42.857 0.00 0.00 0.00 3.85
3530 3591 4.382457 CCTCATGCAACATTGTTTACGTTG 59.618 41.667 0.00 0.00 42.29 4.10
3531 3592 4.545610 CCTCATGCAACATTGTTTACGTT 58.454 39.130 0.00 0.00 0.00 3.99
3532 3593 3.057596 CCCTCATGCAACATTGTTTACGT 60.058 43.478 0.00 0.00 0.00 3.57
3533 3594 3.500982 CCCTCATGCAACATTGTTTACG 58.499 45.455 0.00 0.00 0.00 3.18
3534 3595 3.056607 AGCCCTCATGCAACATTGTTTAC 60.057 43.478 0.00 0.00 0.00 2.01
3535 3596 3.164268 AGCCCTCATGCAACATTGTTTA 58.836 40.909 0.00 0.00 0.00 2.01
3536 3597 1.972795 AGCCCTCATGCAACATTGTTT 59.027 42.857 0.00 0.00 0.00 2.83
3537 3598 1.636148 AGCCCTCATGCAACATTGTT 58.364 45.000 0.00 0.00 0.00 2.83
3538 3599 1.636148 AAGCCCTCATGCAACATTGT 58.364 45.000 0.00 0.00 0.00 2.71
3539 3600 2.739913 CAAAAGCCCTCATGCAACATTG 59.260 45.455 0.00 0.00 0.00 2.82
3540 3601 2.872842 GCAAAAGCCCTCATGCAACATT 60.873 45.455 0.00 0.00 38.63 2.71
3541 3602 1.338389 GCAAAAGCCCTCATGCAACAT 60.338 47.619 0.00 0.00 38.63 2.71
3542 3603 0.033781 GCAAAAGCCCTCATGCAACA 59.966 50.000 0.00 0.00 38.63 3.33
3543 3604 0.033781 TGCAAAAGCCCTCATGCAAC 59.966 50.000 0.00 0.00 45.04 4.17
3544 3605 2.438730 TGCAAAAGCCCTCATGCAA 58.561 47.368 0.00 0.00 45.04 4.08
3545 3606 0.978151 ATTGCAAAAGCCCTCATGCA 59.022 45.000 1.71 0.00 46.21 3.96
3546 3607 1.338389 ACATTGCAAAAGCCCTCATGC 60.338 47.619 1.71 0.00 39.22 4.06
3547 3608 2.739913 CAACATTGCAAAAGCCCTCATG 59.260 45.455 1.71 0.00 0.00 3.07
3548 3609 3.048337 CAACATTGCAAAAGCCCTCAT 57.952 42.857 1.71 0.00 0.00 2.90
3549 3610 2.529780 CAACATTGCAAAAGCCCTCA 57.470 45.000 1.71 0.00 0.00 3.86
3561 3622 4.742417 TGACATAAATTCCCGCAACATTG 58.258 39.130 0.00 0.00 0.00 2.82
3562 3623 5.350633 CATGACATAAATTCCCGCAACATT 58.649 37.500 0.00 0.00 0.00 2.71
3563 3624 4.737352 GCATGACATAAATTCCCGCAACAT 60.737 41.667 0.00 0.00 0.00 2.71
3564 3625 3.428725 GCATGACATAAATTCCCGCAACA 60.429 43.478 0.00 0.00 0.00 3.33
3565 3626 3.115554 GCATGACATAAATTCCCGCAAC 58.884 45.455 0.00 0.00 0.00 4.17
3566 3627 2.223456 CGCATGACATAAATTCCCGCAA 60.223 45.455 0.00 0.00 0.00 4.85
3567 3628 1.333308 CGCATGACATAAATTCCCGCA 59.667 47.619 0.00 0.00 0.00 5.69
3568 3629 1.925946 GCGCATGACATAAATTCCCGC 60.926 52.381 0.30 0.00 0.00 6.13
3569 3630 1.334960 GGCGCATGACATAAATTCCCG 60.335 52.381 10.83 0.00 0.00 5.14
3570 3631 1.680735 TGGCGCATGACATAAATTCCC 59.319 47.619 10.83 0.00 0.00 3.97
3571 3632 2.543653 GGTGGCGCATGACATAAATTCC 60.544 50.000 10.83 0.00 33.95 3.01
3572 3633 2.358898 AGGTGGCGCATGACATAAATTC 59.641 45.455 10.83 0.00 33.95 2.17
3573 3634 2.378038 AGGTGGCGCATGACATAAATT 58.622 42.857 10.83 0.00 33.95 1.82
3574 3635 2.057137 AGGTGGCGCATGACATAAAT 57.943 45.000 10.83 0.00 33.95 1.40
3575 3636 1.832883 AAGGTGGCGCATGACATAAA 58.167 45.000 10.83 0.00 33.95 1.40
3576 3637 1.832883 AAAGGTGGCGCATGACATAA 58.167 45.000 10.83 0.00 33.95 1.90
3577 3638 1.742831 GAAAAGGTGGCGCATGACATA 59.257 47.619 10.83 0.00 33.95 2.29
3578 3639 0.527565 GAAAAGGTGGCGCATGACAT 59.472 50.000 10.83 0.00 33.95 3.06
3579 3640 0.537143 AGAAAAGGTGGCGCATGACA 60.537 50.000 10.83 0.00 0.00 3.58
3580 3641 0.598065 AAGAAAAGGTGGCGCATGAC 59.402 50.000 10.83 1.73 0.00 3.06
3581 3642 0.597568 CAAGAAAAGGTGGCGCATGA 59.402 50.000 10.83 0.00 0.00 3.07
3582 3643 1.010419 GCAAGAAAAGGTGGCGCATG 61.010 55.000 10.83 0.00 0.00 4.06
3583 3644 1.290009 GCAAGAAAAGGTGGCGCAT 59.710 52.632 10.83 0.00 0.00 4.73
3584 3645 1.670949 TTGCAAGAAAAGGTGGCGCA 61.671 50.000 10.83 0.00 0.00 6.09
3585 3646 1.067250 TTGCAAGAAAAGGTGGCGC 59.933 52.632 0.00 0.00 0.00 6.53
3586 3647 0.102120 TGTTGCAAGAAAAGGTGGCG 59.898 50.000 0.00 0.00 0.00 5.69
3587 3648 2.531522 ATGTTGCAAGAAAAGGTGGC 57.468 45.000 0.00 0.00 0.00 5.01
3588 3649 3.989817 GCTTATGTTGCAAGAAAAGGTGG 59.010 43.478 0.00 0.00 0.00 4.61
3589 3650 4.619973 TGCTTATGTTGCAAGAAAAGGTG 58.380 39.130 0.00 0.00 37.51 4.00
3590 3651 4.935352 TGCTTATGTTGCAAGAAAAGGT 57.065 36.364 0.00 0.00 37.51 3.50
3591 3652 5.232463 ACATGCTTATGTTGCAAGAAAAGG 58.768 37.500 0.00 0.00 44.01 3.11
3592 3653 6.774354 AACATGCTTATGTTGCAAGAAAAG 57.226 33.333 0.00 4.81 42.57 2.27
3602 3663 3.306225 CCCACTTGCAACATGCTTATGTT 60.306 43.478 0.00 0.11 45.31 2.71
3603 3664 2.231964 CCCACTTGCAACATGCTTATGT 59.768 45.455 0.00 0.00 45.31 2.29
3604 3665 2.492881 TCCCACTTGCAACATGCTTATG 59.507 45.455 0.00 0.00 45.31 1.90
3605 3666 2.806434 TCCCACTTGCAACATGCTTAT 58.194 42.857 0.00 0.00 45.31 1.73
3606 3667 2.284754 TCCCACTTGCAACATGCTTA 57.715 45.000 0.00 0.00 45.31 3.09
3607 3668 1.636148 ATCCCACTTGCAACATGCTT 58.364 45.000 0.00 0.00 45.31 3.91
3608 3669 1.547372 GAATCCCACTTGCAACATGCT 59.453 47.619 0.00 0.00 45.31 3.79
3609 3670 1.547372 AGAATCCCACTTGCAACATGC 59.453 47.619 0.00 0.00 45.29 4.06
3610 3671 2.673043 GCAGAATCCCACTTGCAACATG 60.673 50.000 0.00 0.00 0.00 3.21
3611 3672 1.547372 GCAGAATCCCACTTGCAACAT 59.453 47.619 0.00 0.00 0.00 2.71
3612 3673 0.961019 GCAGAATCCCACTTGCAACA 59.039 50.000 0.00 0.00 0.00 3.33
3613 3674 0.961019 TGCAGAATCCCACTTGCAAC 59.039 50.000 0.00 0.00 0.00 4.17
3614 3675 1.702182 TTGCAGAATCCCACTTGCAA 58.298 45.000 6.64 6.64 39.51 4.08
3615 3676 3.435846 TTGCAGAATCCCACTTGCA 57.564 47.368 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.