Multiple sequence alignment - TraesCS6B01G323900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G323900 chr6B 100.000 4363 0 0 1 4363 573162956 573158594 0.000000e+00 8058.0
1 TraesCS6B01G323900 chr6D 90.587 1891 124 22 2501 4363 382797458 382795594 0.000000e+00 2457.0
2 TraesCS6B01G323900 chr6D 92.344 1071 58 18 1210 2261 382798522 382797457 0.000000e+00 1502.0
3 TraesCS6B01G323900 chr6D 84.398 1096 65 44 62 1083 382799658 382798595 0.000000e+00 979.0
4 TraesCS6B01G323900 chr6A 90.677 1684 81 30 2569 4187 524867180 524865508 0.000000e+00 2170.0
5 TraesCS6B01G323900 chr6A 88.755 1076 72 27 1222 2261 524868428 524867366 0.000000e+00 1271.0
6 TraesCS6B01G323900 chr6A 85.137 989 75 35 160 1100 524869448 524868484 0.000000e+00 946.0
7 TraesCS6B01G323900 chr6A 96.226 53 2 0 4311 4363 524865422 524865370 2.160000e-13 87.9
8 TraesCS6B01G323900 chr7A 97.490 239 6 0 2261 2499 493122788 493122550 4.060000e-110 409.0
9 TraesCS6B01G323900 chr7A 79.888 537 73 20 1222 1757 167680504 167681006 1.150000e-95 361.0
10 TraesCS6B01G323900 chr7A 84.348 345 44 8 1225 1567 167736199 167735863 3.250000e-86 329.0
11 TraesCS6B01G323900 chrUn 96.653 239 8 0 2261 2499 59805325 59805087 8.790000e-107 398.0
12 TraesCS6B01G323900 chrUn 96.234 239 9 0 2261 2499 119206053 119206291 4.090000e-105 392.0
13 TraesCS6B01G323900 chr2B 96.653 239 8 0 2261 2499 176251983 176251745 8.790000e-107 398.0
14 TraesCS6B01G323900 chr2B 96.234 239 9 0 2261 2499 181755293 181755055 4.090000e-105 392.0
15 TraesCS6B01G323900 chr3B 96.250 240 9 0 2261 2500 798008453 798008214 1.140000e-105 394.0
16 TraesCS6B01G323900 chr3B 95.868 242 10 0 2258 2499 31919604 31919845 4.090000e-105 392.0
17 TraesCS6B01G323900 chr3B 96.234 239 9 0 2261 2499 396836067 396835829 4.090000e-105 392.0
18 TraesCS6B01G323900 chr3B 95.833 240 10 0 2261 2500 279676874 279677113 5.290000e-104 388.0
19 TraesCS6B01G323900 chr7D 79.888 537 82 18 1222 1757 165944611 165945122 1.920000e-98 370.0
20 TraesCS6B01G323900 chr7D 83.140 344 50 7 1225 1567 166204301 166203965 1.520000e-79 307.0
21 TraesCS6B01G323900 chr7B 79.592 539 80 24 1222 1757 130120592 130121103 4.150000e-95 359.0
22 TraesCS6B01G323900 chr7B 83.239 352 48 9 1218 1567 130504060 130503718 3.280000e-81 313.0
23 TraesCS6B01G323900 chr2A 87.273 55 7 0 2500 2554 102117008 102116954 3.640000e-06 63.9
24 TraesCS6B01G323900 chr1A 87.500 56 5 2 2500 2554 13278577 13278523 3.640000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G323900 chr6B 573158594 573162956 4362 True 8058.000 8058 100.000000 1 4363 1 chr6B.!!$R1 4362
1 TraesCS6B01G323900 chr6D 382795594 382799658 4064 True 1646.000 2457 89.109667 62 4363 3 chr6D.!!$R1 4301
2 TraesCS6B01G323900 chr6A 524865370 524869448 4078 True 1118.725 2170 90.198750 160 4363 4 chr6A.!!$R1 4203
3 TraesCS6B01G323900 chr7A 167680504 167681006 502 False 361.000 361 79.888000 1222 1757 1 chr7A.!!$F1 535
4 TraesCS6B01G323900 chr7D 165944611 165945122 511 False 370.000 370 79.888000 1222 1757 1 chr7D.!!$F1 535
5 TraesCS6B01G323900 chr7B 130120592 130121103 511 False 359.000 359 79.592000 1222 1757 1 chr7B.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 936 0.179189 CAGAAACTTTGCGCCCGATC 60.179 55.0 4.18 0.0 0.0 3.69 F
2173 2358 0.036732 AGAATTCGTCCCTTGCAGCA 59.963 50.0 0.00 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 2664 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.0 0.00 0.00 37.07 2.01 R
3971 4344 0.233848 CGTAACGTGTGCAGGTTTCC 59.766 55.0 14.14 6.39 39.69 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.728102 CGCCGTACCAAGCCACGA 62.728 66.667 0.00 0.00 40.56 4.35
23 24 2.357760 GCCGTACCAAGCCACGAA 60.358 61.111 0.00 0.00 40.56 3.85
24 25 1.962306 GCCGTACCAAGCCACGAAA 60.962 57.895 0.00 0.00 40.56 3.46
25 26 1.908066 GCCGTACCAAGCCACGAAAG 61.908 60.000 0.00 0.00 40.56 2.62
26 27 1.296056 CCGTACCAAGCCACGAAAGG 61.296 60.000 0.00 0.00 40.56 3.11
27 28 0.320073 CGTACCAAGCCACGAAAGGA 60.320 55.000 0.00 0.00 40.56 3.36
28 29 1.874739 CGTACCAAGCCACGAAAGGAA 60.875 52.381 0.00 0.00 40.56 3.36
29 30 2.433436 GTACCAAGCCACGAAAGGAAT 58.567 47.619 0.00 0.00 0.00 3.01
30 31 1.534729 ACCAAGCCACGAAAGGAATC 58.465 50.000 0.00 0.00 0.00 2.52
31 32 1.202879 ACCAAGCCACGAAAGGAATCA 60.203 47.619 0.00 0.00 0.00 2.57
32 33 1.200020 CCAAGCCACGAAAGGAATCAC 59.800 52.381 0.00 0.00 0.00 3.06
33 34 1.879380 CAAGCCACGAAAGGAATCACA 59.121 47.619 0.00 0.00 0.00 3.58
34 35 2.489329 CAAGCCACGAAAGGAATCACAT 59.511 45.455 0.00 0.00 0.00 3.21
35 36 3.627395 AGCCACGAAAGGAATCACATA 57.373 42.857 0.00 0.00 0.00 2.29
36 37 3.535561 AGCCACGAAAGGAATCACATAG 58.464 45.455 0.00 0.00 0.00 2.23
37 38 3.055094 AGCCACGAAAGGAATCACATAGT 60.055 43.478 0.00 0.00 0.00 2.12
38 39 3.063997 GCCACGAAAGGAATCACATAGTG 59.936 47.826 0.00 0.00 34.45 2.74
39 40 4.253685 CCACGAAAGGAATCACATAGTGT 58.746 43.478 0.00 0.00 34.79 3.55
40 41 5.416083 CCACGAAAGGAATCACATAGTGTA 58.584 41.667 0.00 0.00 34.79 2.90
41 42 5.520288 CCACGAAAGGAATCACATAGTGTAG 59.480 44.000 0.00 0.00 34.79 2.74
42 43 6.100004 CACGAAAGGAATCACATAGTGTAGT 58.900 40.000 0.00 0.00 34.79 2.73
43 44 7.255569 CACGAAAGGAATCACATAGTGTAGTA 58.744 38.462 0.00 0.00 34.79 1.82
44 45 7.220300 CACGAAAGGAATCACATAGTGTAGTAC 59.780 40.741 0.00 0.00 34.79 2.73
45 46 6.414109 CGAAAGGAATCACATAGTGTAGTACG 59.586 42.308 0.00 0.00 34.79 3.67
46 47 6.770746 AAGGAATCACATAGTGTAGTACGT 57.229 37.500 0.00 0.00 34.79 3.57
47 48 7.870509 AAGGAATCACATAGTGTAGTACGTA 57.129 36.000 0.00 0.00 34.79 3.57
48 49 7.256756 AGGAATCACATAGTGTAGTACGTAC 57.743 40.000 18.10 18.10 34.79 3.67
49 50 7.052873 AGGAATCACATAGTGTAGTACGTACT 58.947 38.462 29.62 29.62 34.90 2.73
50 51 8.206867 AGGAATCACATAGTGTAGTACGTACTA 58.793 37.037 27.51 27.51 33.56 1.82
74 75 2.028930 AGTACTGTAGTGAGCAGGCAAC 60.029 50.000 0.00 0.00 38.22 4.17
76 77 0.322975 CTGTAGTGAGCAGGCAACCT 59.677 55.000 0.00 0.00 37.17 3.50
87 88 2.100916 GCAGGCAACCTAGATCTCGTAA 59.899 50.000 0.00 0.00 29.64 3.18
97 98 4.519350 CCTAGATCTCGTAATGTAGTGCCA 59.481 45.833 0.00 0.00 0.00 4.92
110 111 6.639632 ATGTAGTGCCATCATAAATGGAAC 57.360 37.500 8.23 7.61 46.07 3.62
122 123 6.174049 TCATAAATGGAACCACGTACAATGA 58.826 36.000 0.00 0.00 0.00 2.57
132 133 0.526739 CGTACAATGACCGATCGCCA 60.527 55.000 10.32 10.22 0.00 5.69
145 146 1.130054 ATCGCCATATGCAGGGAGGT 61.130 55.000 6.06 0.00 41.33 3.85
172 173 6.183360 CCAGATTAGTACTAGCACAACAAAGC 60.183 42.308 2.23 0.00 0.00 3.51
180 181 1.170290 GCACAACAAAGCGGGTAGGT 61.170 55.000 0.00 0.00 0.00 3.08
200 201 3.119424 GGTGGGTTCGAAACAGACAAAAA 60.119 43.478 16.38 0.00 0.00 1.94
243 251 3.368531 GGAAGTCGTCTTGTTCAGCCTAT 60.369 47.826 0.00 0.00 33.64 2.57
420 450 3.047877 GAGCCAACGACCCAACCG 61.048 66.667 0.00 0.00 0.00 4.44
427 457 0.399075 AACGACCCAACCGGATTTCT 59.601 50.000 9.46 0.00 34.64 2.52
432 462 3.692593 CGACCCAACCGGATTTCTAATTT 59.307 43.478 9.46 0.00 34.64 1.82
433 463 4.438200 CGACCCAACCGGATTTCTAATTTG 60.438 45.833 9.46 0.00 34.64 2.32
434 464 4.412843 ACCCAACCGGATTTCTAATTTGT 58.587 39.130 9.46 0.00 34.64 2.83
435 465 4.219725 ACCCAACCGGATTTCTAATTTGTG 59.780 41.667 9.46 0.00 34.64 3.33
469 507 4.873129 CGGAGCGGATCGGTGGTG 62.873 72.222 1.93 0.00 37.83 4.17
470 508 4.530857 GGAGCGGATCGGTGGTGG 62.531 72.222 1.93 0.00 37.83 4.61
503 541 2.209273 TCACATTAACGCGATCATGGG 58.791 47.619 15.93 10.23 0.00 4.00
626 681 1.714794 ACTACACGCAGATCTTGTGC 58.285 50.000 19.86 9.52 41.06 4.57
680 737 4.041444 AGCCAGTCCTGAATTCCTGATATC 59.959 45.833 10.08 0.00 0.00 1.63
733 790 0.999730 CACATGCATGCACACACACG 61.000 55.000 25.37 8.02 0.00 4.49
734 791 1.443025 CATGCATGCACACACACGG 60.443 57.895 25.37 1.38 0.00 4.94
741 798 1.813753 GCACACACACGGACACACT 60.814 57.895 0.00 0.00 0.00 3.55
742 799 1.366111 GCACACACACGGACACACTT 61.366 55.000 0.00 0.00 0.00 3.16
743 800 1.083489 CACACACACGGACACACTTT 58.917 50.000 0.00 0.00 0.00 2.66
746 803 1.939934 CACACACGGACACACTTTGAT 59.060 47.619 0.00 0.00 0.00 2.57
748 805 3.558006 CACACACGGACACACTTTGATAA 59.442 43.478 0.00 0.00 0.00 1.75
749 806 3.558418 ACACACGGACACACTTTGATAAC 59.442 43.478 0.00 0.00 0.00 1.89
750 807 3.807622 CACACGGACACACTTTGATAACT 59.192 43.478 0.00 0.00 0.00 2.24
751 808 3.807622 ACACGGACACACTTTGATAACTG 59.192 43.478 0.00 0.00 0.00 3.16
753 810 4.986034 CACGGACACACTTTGATAACTGTA 59.014 41.667 0.00 0.00 0.00 2.74
754 811 5.637810 CACGGACACACTTTGATAACTGTAT 59.362 40.000 0.00 0.00 0.00 2.29
755 812 5.637810 ACGGACACACTTTGATAACTGTATG 59.362 40.000 0.00 0.00 0.00 2.39
757 814 6.809689 CGGACACACTTTGATAACTGTATGTA 59.190 38.462 0.00 0.00 0.00 2.29
779 859 4.032960 TGTACTTCTGGTTGCCATGATT 57.967 40.909 0.00 0.00 30.82 2.57
780 860 3.758023 TGTACTTCTGGTTGCCATGATTG 59.242 43.478 0.00 0.00 30.82 2.67
782 862 0.527113 TTCTGGTTGCCATGATTGCG 59.473 50.000 0.00 0.00 30.82 4.85
783 863 0.322366 TCTGGTTGCCATGATTGCGA 60.322 50.000 0.00 0.00 30.82 5.10
785 865 1.226773 GGTTGCCATGATTGCGAGC 60.227 57.895 0.00 0.00 33.87 5.03
787 867 0.524816 GTTGCCATGATTGCGAGCTG 60.525 55.000 0.00 0.00 0.00 4.24
788 868 0.961857 TTGCCATGATTGCGAGCTGT 60.962 50.000 0.00 0.00 0.00 4.40
789 869 1.063649 GCCATGATTGCGAGCTGTG 59.936 57.895 0.00 0.00 0.00 3.66
790 870 1.371337 GCCATGATTGCGAGCTGTGA 61.371 55.000 0.00 0.00 0.00 3.58
791 871 1.089112 CCATGATTGCGAGCTGTGAA 58.911 50.000 0.00 0.00 0.00 3.18
792 872 1.469703 CCATGATTGCGAGCTGTGAAA 59.530 47.619 0.00 0.00 0.00 2.69
793 873 2.512885 CATGATTGCGAGCTGTGAAAC 58.487 47.619 0.00 0.00 37.35 2.78
822 902 3.114616 CGTGTTGGCTCTCCTGCG 61.115 66.667 0.00 0.00 0.00 5.18
830 910 2.575993 CTCTCCTGCGGTGAGTGG 59.424 66.667 14.53 5.84 38.19 4.00
831 911 1.979155 CTCTCCTGCGGTGAGTGGA 60.979 63.158 14.53 0.00 38.19 4.02
833 913 2.203640 TCCTGCGGTGAGTGGAGT 60.204 61.111 0.00 0.00 0.00 3.85
834 914 0.965866 CTCCTGCGGTGAGTGGAGTA 60.966 60.000 0.00 0.00 40.69 2.59
835 915 0.541063 TCCTGCGGTGAGTGGAGTAA 60.541 55.000 0.00 0.00 0.00 2.24
852 932 0.955905 TAACCAGAAACTTTGCGCCC 59.044 50.000 4.18 0.00 0.00 6.13
856 936 0.179189 CAGAAACTTTGCGCCCGATC 60.179 55.000 4.18 0.00 0.00 3.69
877 957 1.705256 TTATTCACACGCAGACGGAC 58.295 50.000 0.00 0.00 46.04 4.79
878 958 0.455464 TATTCACACGCAGACGGACG 60.455 55.000 0.00 0.00 46.04 4.79
879 959 3.719471 TATTCACACGCAGACGGACGG 62.719 57.143 0.00 0.00 46.04 4.79
983 1083 3.810743 GCATCTCCATAAAATACGCCCCT 60.811 47.826 0.00 0.00 0.00 4.79
1003 1103 3.324207 GTCACCTTTGACCCCTCAC 57.676 57.895 0.00 0.00 45.77 3.51
1005 1105 0.401395 TCACCTTTGACCCCTCACCT 60.401 55.000 0.00 0.00 0.00 4.00
1006 1106 0.036875 CACCTTTGACCCCTCACCTC 59.963 60.000 0.00 0.00 0.00 3.85
1007 1107 1.134438 ACCTTTGACCCCTCACCTCC 61.134 60.000 0.00 0.00 0.00 4.30
1010 1110 0.840722 TTTGACCCCTCACCTCCTCC 60.841 60.000 0.00 0.00 0.00 4.30
1011 1111 1.751143 TTGACCCCTCACCTCCTCCT 61.751 60.000 0.00 0.00 0.00 3.69
1017 1125 0.396974 CCTCACCTCCTCCTCTCCTG 60.397 65.000 0.00 0.00 0.00 3.86
1027 1135 1.627834 CTCCTCTCCTGCAGTTTCCTT 59.372 52.381 13.81 0.00 0.00 3.36
1084 1197 3.591835 GCGCCTCCCGAGAGAGAG 61.592 72.222 0.00 0.00 43.39 3.20
1085 1198 2.190843 CGCCTCCCGAGAGAGAGA 59.809 66.667 0.00 0.00 43.39 3.10
1086 1199 1.891919 CGCCTCCCGAGAGAGAGAG 60.892 68.421 0.00 0.00 43.39 3.20
1087 1200 1.226262 GCCTCCCGAGAGAGAGAGT 59.774 63.158 0.00 0.00 43.39 3.24
1097 1210 1.134401 AGAGAGAGAGTCGAGCAGAGG 60.134 57.143 0.00 0.00 0.00 3.69
1098 1211 0.748005 AGAGAGAGTCGAGCAGAGGC 60.748 60.000 0.00 0.00 41.61 4.70
1099 1212 1.001517 AGAGAGTCGAGCAGAGGCA 60.002 57.895 0.00 0.00 44.61 4.75
1100 1213 1.031571 AGAGAGTCGAGCAGAGGCAG 61.032 60.000 0.00 0.00 44.61 4.85
1101 1214 1.001517 AGAGTCGAGCAGAGGCAGA 60.002 57.895 0.00 0.00 44.61 4.26
1102 1215 1.138671 GAGTCGAGCAGAGGCAGAC 59.861 63.158 7.06 7.06 44.74 3.51
1103 1216 1.590610 GAGTCGAGCAGAGGCAGACA 61.591 60.000 14.39 0.00 45.92 3.41
1104 1217 1.153862 GTCGAGCAGAGGCAGACAG 60.154 63.158 9.37 0.00 44.21 3.51
1105 1218 1.303643 TCGAGCAGAGGCAGACAGA 60.304 57.895 0.00 0.00 44.61 3.41
1106 1219 1.153862 CGAGCAGAGGCAGACAGAC 60.154 63.158 0.00 0.00 44.61 3.51
1107 1220 1.153862 GAGCAGAGGCAGACAGACG 60.154 63.158 0.00 0.00 44.61 4.18
1108 1221 1.590610 GAGCAGAGGCAGACAGACGA 61.591 60.000 0.00 0.00 44.61 4.20
1109 1222 1.445238 GCAGAGGCAGACAGACGAC 60.445 63.158 0.00 0.00 40.72 4.34
1110 1223 1.154131 CAGAGGCAGACAGACGACG 60.154 63.158 0.00 0.00 0.00 5.12
1111 1224 2.505118 GAGGCAGACAGACGACGC 60.505 66.667 0.00 0.00 0.00 5.19
1112 1225 3.973267 GAGGCAGACAGACGACGCC 62.973 68.421 0.00 0.00 43.31 5.68
1113 1226 4.057428 GGCAGACAGACGACGCCT 62.057 66.667 0.00 0.00 39.73 5.52
1114 1227 2.505118 GCAGACAGACGACGCCTC 60.505 66.667 0.00 0.00 0.00 4.70
1115 1228 2.179517 CAGACAGACGACGCCTCC 59.820 66.667 0.00 0.00 0.00 4.30
1116 1229 3.063084 AGACAGACGACGCCTCCC 61.063 66.667 0.00 0.00 0.00 4.30
1117 1230 3.063084 GACAGACGACGCCTCCCT 61.063 66.667 0.00 0.00 0.00 4.20
1124 1237 1.258445 ACGACGCCTCCCTCAAGAAT 61.258 55.000 0.00 0.00 0.00 2.40
1138 1251 4.319766 CCTCAAGAATCAAGACCAAACACG 60.320 45.833 0.00 0.00 0.00 4.49
1200 1313 3.680786 CAGCACCACCGAGACCGA 61.681 66.667 0.00 0.00 38.22 4.69
1201 1314 2.915659 AGCACCACCGAGACCGAA 60.916 61.111 0.00 0.00 38.22 4.30
1202 1315 2.432628 GCACCACCGAGACCGAAG 60.433 66.667 0.00 0.00 38.22 3.79
1203 1316 2.432628 CACCACCGAGACCGAAGC 60.433 66.667 0.00 0.00 38.22 3.86
1204 1317 4.052229 ACCACCGAGACCGAAGCG 62.052 66.667 0.00 0.00 38.22 4.68
1205 1318 3.744719 CCACCGAGACCGAAGCGA 61.745 66.667 0.00 0.00 38.22 4.93
1206 1319 2.202492 CACCGAGACCGAAGCGAG 60.202 66.667 0.00 0.00 38.22 5.03
1207 1320 2.359602 ACCGAGACCGAAGCGAGA 60.360 61.111 0.00 0.00 38.22 4.04
1208 1321 2.400158 ACCGAGACCGAAGCGAGAG 61.400 63.158 0.00 0.00 38.22 3.20
1209 1322 2.107292 CCGAGACCGAAGCGAGAGA 61.107 63.158 0.00 0.00 38.22 3.10
1210 1323 1.350319 CGAGACCGAAGCGAGAGAG 59.650 63.158 0.00 0.00 38.22 3.20
1211 1324 1.725066 GAGACCGAAGCGAGAGAGG 59.275 63.158 0.00 0.00 0.00 3.69
1212 1325 0.745128 GAGACCGAAGCGAGAGAGGA 60.745 60.000 0.00 0.00 0.00 3.71
1213 1326 0.746563 AGACCGAAGCGAGAGAGGAG 60.747 60.000 0.00 0.00 0.00 3.69
1214 1327 0.745128 GACCGAAGCGAGAGAGGAGA 60.745 60.000 0.00 0.00 0.00 3.71
1220 1333 0.986019 AGCGAGAGAGGAGAGGAGGA 60.986 60.000 0.00 0.00 0.00 3.71
1295 1408 4.754667 GGCACGTCCTTCCGGGTC 62.755 72.222 0.00 0.00 36.25 4.46
1578 1691 1.306482 CTCTCCTCCTTCCAGGGCA 60.306 63.158 0.00 0.00 35.59 5.36
1994 2143 3.836146 TCAATTAGCCCCATCCATTCTG 58.164 45.455 0.00 0.00 0.00 3.02
2029 2178 2.124529 TGCGTGTTCCCTTGTGCA 60.125 55.556 0.00 0.00 0.00 4.57
2060 2217 6.459521 CGTGATGCATGAATTATATTCGTTCG 59.540 38.462 2.46 0.00 0.00 3.95
2094 2278 8.292448 TCTGAACAAGATCTGCATTTTTACTTC 58.708 33.333 0.00 0.00 0.00 3.01
2134 2319 4.341806 TGAGATGCACAACCAAAAGTCAAT 59.658 37.500 0.00 0.00 0.00 2.57
2166 2351 2.180276 AGTACTGCAGAATTCGTCCCT 58.820 47.619 23.35 0.00 0.00 4.20
2169 2354 0.449388 CTGCAGAATTCGTCCCTTGC 59.551 55.000 8.42 7.87 0.00 4.01
2170 2355 0.250684 TGCAGAATTCGTCCCTTGCA 60.251 50.000 12.30 12.30 0.00 4.08
2171 2356 0.449388 GCAGAATTCGTCCCTTGCAG 59.551 55.000 9.51 0.00 0.00 4.41
2172 2357 0.449388 CAGAATTCGTCCCTTGCAGC 59.551 55.000 0.00 0.00 0.00 5.25
2173 2358 0.036732 AGAATTCGTCCCTTGCAGCA 59.963 50.000 0.00 0.00 0.00 4.41
2175 2360 1.474077 GAATTCGTCCCTTGCAGCAAT 59.526 47.619 8.67 0.00 0.00 3.56
2219 2405 1.252904 ATCTTGGCCAGCAATGCGTT 61.253 50.000 5.11 0.00 0.00 4.84
2224 2410 0.248621 GGCCAGCAATGCGTTGTATC 60.249 55.000 19.49 3.74 37.65 2.24
2230 2416 3.623060 CAGCAATGCGTTGTATCCTACTT 59.377 43.478 19.49 0.00 37.65 2.24
2239 2425 4.556898 CGTTGTATCCTACTTCCTCCATCG 60.557 50.000 0.00 0.00 0.00 3.84
2240 2426 2.891580 TGTATCCTACTTCCTCCATCGC 59.108 50.000 0.00 0.00 0.00 4.58
2253 2439 3.374058 CCTCCATCGCGAAATACTTGTTT 59.626 43.478 15.24 0.00 0.00 2.83
2261 2447 7.354025 TCGCGAAATACTTGTTTGAGAAATA 57.646 32.000 6.20 0.00 0.00 1.40
2262 2448 7.231607 TCGCGAAATACTTGTTTGAGAAATAC 58.768 34.615 6.20 0.00 0.00 1.89
2263 2449 7.117236 TCGCGAAATACTTGTTTGAGAAATACT 59.883 33.333 6.20 0.00 0.00 2.12
2264 2450 8.377681 CGCGAAATACTTGTTTGAGAAATACTA 58.622 33.333 0.00 0.00 0.00 1.82
2265 2451 9.474249 GCGAAATACTTGTTTGAGAAATACTAC 57.526 33.333 0.00 0.00 0.00 2.73
2266 2452 9.968743 CGAAATACTTGTTTGAGAAATACTACC 57.031 33.333 0.00 0.00 0.00 3.18
2269 2455 8.928270 ATACTTGTTTGAGAAATACTACCTCG 57.072 34.615 0.00 0.00 0.00 4.63
2270 2456 6.164176 ACTTGTTTGAGAAATACTACCTCGG 58.836 40.000 0.00 0.00 0.00 4.63
2271 2457 5.733620 TGTTTGAGAAATACTACCTCGGT 57.266 39.130 0.00 0.00 0.00 4.69
2273 2459 4.996788 TTGAGAAATACTACCTCGGTCC 57.003 45.455 0.00 0.00 0.00 4.46
2275 2461 4.607239 TGAGAAATACTACCTCGGTCCTT 58.393 43.478 0.00 0.00 0.00 3.36
2276 2462 4.401519 TGAGAAATACTACCTCGGTCCTTG 59.598 45.833 0.00 0.00 0.00 3.61
2277 2463 3.705072 AGAAATACTACCTCGGTCCTTGG 59.295 47.826 0.00 0.00 0.00 3.61
2278 2464 2.842645 ATACTACCTCGGTCCTTGGT 57.157 50.000 7.64 7.64 37.83 3.67
2279 2465 2.610438 TACTACCTCGGTCCTTGGTT 57.390 50.000 7.79 0.00 35.48 3.67
2280 2466 2.610438 ACTACCTCGGTCCTTGGTTA 57.390 50.000 7.79 0.00 35.48 2.85
2281 2467 3.111741 ACTACCTCGGTCCTTGGTTAT 57.888 47.619 7.79 0.00 35.48 1.89
2282 2468 4.255510 ACTACCTCGGTCCTTGGTTATA 57.744 45.455 7.79 0.00 35.48 0.98
2283 2469 4.213513 ACTACCTCGGTCCTTGGTTATAG 58.786 47.826 7.79 3.38 35.48 1.31
2284 2470 2.395619 ACCTCGGTCCTTGGTTATAGG 58.604 52.381 0.00 0.00 0.00 2.57
2285 2471 2.292719 ACCTCGGTCCTTGGTTATAGGT 60.293 50.000 0.00 0.00 34.29 3.08
2286 2472 2.364647 CCTCGGTCCTTGGTTATAGGTC 59.635 54.545 0.00 0.00 34.29 3.85
2287 2473 2.364647 CTCGGTCCTTGGTTATAGGTCC 59.635 54.545 0.00 0.00 37.55 4.46
2288 2474 2.023695 TCGGTCCTTGGTTATAGGTCCT 60.024 50.000 0.00 0.00 38.40 3.85
2289 2475 2.364647 CGGTCCTTGGTTATAGGTCCTC 59.635 54.545 0.00 0.00 38.40 3.71
2290 2476 3.655384 GGTCCTTGGTTATAGGTCCTCT 58.345 50.000 0.00 0.00 37.80 3.69
2291 2477 4.038633 GGTCCTTGGTTATAGGTCCTCTT 58.961 47.826 0.00 0.00 37.80 2.85
2292 2478 4.473922 GGTCCTTGGTTATAGGTCCTCTTT 59.526 45.833 0.00 0.00 37.80 2.52
2293 2479 5.429130 GTCCTTGGTTATAGGTCCTCTTTG 58.571 45.833 0.00 0.00 34.29 2.77
2294 2480 5.045797 GTCCTTGGTTATAGGTCCTCTTTGT 60.046 44.000 0.00 0.00 34.29 2.83
2295 2481 6.155737 GTCCTTGGTTATAGGTCCTCTTTGTA 59.844 42.308 0.00 0.00 34.29 2.41
2296 2482 6.383147 TCCTTGGTTATAGGTCCTCTTTGTAG 59.617 42.308 0.00 0.00 34.29 2.74
2297 2483 6.156429 CCTTGGTTATAGGTCCTCTTTGTAGT 59.844 42.308 0.00 0.00 0.00 2.73
2298 2484 7.311109 CCTTGGTTATAGGTCCTCTTTGTAGTT 60.311 40.741 0.00 0.00 0.00 2.24
2299 2485 7.563724 TGGTTATAGGTCCTCTTTGTAGTTT 57.436 36.000 0.00 0.00 0.00 2.66
2300 2486 7.391620 TGGTTATAGGTCCTCTTTGTAGTTTG 58.608 38.462 0.00 0.00 0.00 2.93
2301 2487 7.016858 TGGTTATAGGTCCTCTTTGTAGTTTGT 59.983 37.037 0.00 0.00 0.00 2.83
2302 2488 7.333672 GGTTATAGGTCCTCTTTGTAGTTTGTG 59.666 40.741 0.00 0.00 0.00 3.33
2303 2489 3.477530 AGGTCCTCTTTGTAGTTTGTGC 58.522 45.455 0.00 0.00 0.00 4.57
2304 2490 2.552743 GGTCCTCTTTGTAGTTTGTGCC 59.447 50.000 0.00 0.00 0.00 5.01
2305 2491 3.211045 GTCCTCTTTGTAGTTTGTGCCA 58.789 45.455 0.00 0.00 0.00 4.92
2306 2492 3.630312 GTCCTCTTTGTAGTTTGTGCCAA 59.370 43.478 0.00 0.00 0.00 4.52
2307 2493 4.097286 GTCCTCTTTGTAGTTTGTGCCAAA 59.903 41.667 0.00 0.00 0.00 3.28
2308 2494 4.892934 TCCTCTTTGTAGTTTGTGCCAAAT 59.107 37.500 4.07 0.00 0.00 2.32
2309 2495 5.362430 TCCTCTTTGTAGTTTGTGCCAAATT 59.638 36.000 4.07 3.14 0.00 1.82
2310 2496 6.048509 CCTCTTTGTAGTTTGTGCCAAATTT 58.951 36.000 4.07 0.00 0.00 1.82
2311 2497 6.538381 CCTCTTTGTAGTTTGTGCCAAATTTT 59.462 34.615 4.07 0.00 0.00 1.82
2312 2498 7.301068 TCTTTGTAGTTTGTGCCAAATTTTG 57.699 32.000 1.99 1.99 0.00 2.44
2313 2499 7.099764 TCTTTGTAGTTTGTGCCAAATTTTGA 58.900 30.769 10.72 0.00 0.00 2.69
2314 2500 6.654793 TTGTAGTTTGTGCCAAATTTTGAC 57.345 33.333 10.72 0.00 0.00 3.18
2315 2501 5.971763 TGTAGTTTGTGCCAAATTTTGACT 58.028 33.333 10.72 7.29 0.00 3.41
2316 2502 7.101652 TGTAGTTTGTGCCAAATTTTGACTA 57.898 32.000 10.72 6.41 0.00 2.59
2317 2503 7.548097 TGTAGTTTGTGCCAAATTTTGACTAA 58.452 30.769 10.72 2.90 0.00 2.24
2318 2504 8.035394 TGTAGTTTGTGCCAAATTTTGACTAAA 58.965 29.630 10.72 2.25 0.00 1.85
2319 2505 7.538303 AGTTTGTGCCAAATTTTGACTAAAG 57.462 32.000 10.72 0.00 0.00 1.85
2320 2506 7.327214 AGTTTGTGCCAAATTTTGACTAAAGA 58.673 30.769 10.72 0.00 0.00 2.52
2321 2507 7.986889 AGTTTGTGCCAAATTTTGACTAAAGAT 59.013 29.630 10.72 0.00 0.00 2.40
2322 2508 8.611757 GTTTGTGCCAAATTTTGACTAAAGATT 58.388 29.630 10.72 0.00 0.00 2.40
2323 2509 8.729805 TTGTGCCAAATTTTGACTAAAGATTT 57.270 26.923 10.72 0.00 0.00 2.17
2324 2510 9.823647 TTGTGCCAAATTTTGACTAAAGATTTA 57.176 25.926 10.72 0.00 0.00 1.40
2325 2511 9.823647 TGTGCCAAATTTTGACTAAAGATTTAA 57.176 25.926 10.72 0.00 0.00 1.52
2350 2536 9.539825 AACTAACAAATTGTTAATGCATGTCAA 57.460 25.926 17.85 6.93 41.70 3.18
2351 2537 9.539825 ACTAACAAATTGTTAATGCATGTCAAA 57.460 25.926 17.85 0.00 41.70 2.69
2383 2569 7.864108 ATCTCATTGGATTCGTATTTGAACA 57.136 32.000 0.00 0.00 0.00 3.18
2384 2570 7.864108 TCTCATTGGATTCGTATTTGAACAT 57.136 32.000 0.00 0.00 0.00 2.71
2385 2571 8.956533 TCTCATTGGATTCGTATTTGAACATA 57.043 30.769 0.00 0.00 0.00 2.29
2386 2572 9.045223 TCTCATTGGATTCGTATTTGAACATAG 57.955 33.333 0.00 0.00 0.00 2.23
2387 2573 8.731275 TCATTGGATTCGTATTTGAACATAGT 57.269 30.769 0.00 0.00 0.00 2.12
2388 2574 9.173021 TCATTGGATTCGTATTTGAACATAGTT 57.827 29.630 0.00 0.00 0.00 2.24
2389 2575 9.787532 CATTGGATTCGTATTTGAACATAGTTT 57.212 29.630 0.00 0.00 0.00 2.66
2391 2577 9.834628 TTGGATTCGTATTTGAACATAGTTTTC 57.165 29.630 0.00 0.00 0.00 2.29
2392 2578 9.004717 TGGATTCGTATTTGAACATAGTTTTCA 57.995 29.630 0.00 0.00 0.00 2.69
2393 2579 9.834628 GGATTCGTATTTGAACATAGTTTTCAA 57.165 29.630 0.00 0.00 40.42 2.69
2411 2597 9.442047 AGTTTTCAAAAATACAATGTTTGGTGA 57.558 25.926 0.00 0.00 33.88 4.02
2412 2598 9.484326 GTTTTCAAAAATACAATGTTTGGTGAC 57.516 29.630 0.00 0.00 33.88 3.67
2413 2599 8.777865 TTTCAAAAATACAATGTTTGGTGACA 57.222 26.923 0.00 0.00 33.88 3.58
2414 2600 8.954950 TTCAAAAATACAATGTTTGGTGACAT 57.045 26.923 0.00 0.00 41.83 3.06
2415 2601 8.362860 TCAAAAATACAATGTTTGGTGACATG 57.637 30.769 0.00 0.00 40.03 3.21
2416 2602 6.783892 AAAATACAATGTTTGGTGACATGC 57.216 33.333 0.00 0.00 40.03 4.06
2417 2603 2.420628 ACAATGTTTGGTGACATGCG 57.579 45.000 0.00 0.00 40.03 4.73
2418 2604 1.680735 ACAATGTTTGGTGACATGCGT 59.319 42.857 0.00 0.00 40.03 5.24
2419 2605 2.052891 CAATGTTTGGTGACATGCGTG 58.947 47.619 3.82 3.82 40.03 5.34
2420 2606 1.603456 ATGTTTGGTGACATGCGTGA 58.397 45.000 14.17 0.00 42.32 4.35
2421 2607 1.383523 TGTTTGGTGACATGCGTGAA 58.616 45.000 14.17 0.00 42.32 3.18
2422 2608 1.064803 TGTTTGGTGACATGCGTGAAC 59.935 47.619 14.17 10.22 42.32 3.18
2423 2609 1.064803 GTTTGGTGACATGCGTGAACA 59.935 47.619 14.17 9.53 42.32 3.18
2424 2610 1.603456 TTGGTGACATGCGTGAACAT 58.397 45.000 14.17 0.00 42.32 2.71
2425 2611 1.603456 TGGTGACATGCGTGAACATT 58.397 45.000 14.17 0.00 33.40 2.71
2426 2612 1.952990 TGGTGACATGCGTGAACATTT 59.047 42.857 14.17 0.00 33.40 2.32
2427 2613 2.360483 TGGTGACATGCGTGAACATTTT 59.640 40.909 14.17 0.00 33.40 1.82
2428 2614 2.725723 GGTGACATGCGTGAACATTTTG 59.274 45.455 14.17 0.00 0.00 2.44
2429 2615 3.371168 GTGACATGCGTGAACATTTTGT 58.629 40.909 14.17 0.00 0.00 2.83
2430 2616 3.796178 GTGACATGCGTGAACATTTTGTT 59.204 39.130 14.17 0.00 44.37 2.83
2431 2617 4.973051 GTGACATGCGTGAACATTTTGTTA 59.027 37.500 14.17 0.00 41.28 2.41
2432 2618 5.457148 GTGACATGCGTGAACATTTTGTTAA 59.543 36.000 14.17 0.00 41.28 2.01
2433 2619 6.143758 GTGACATGCGTGAACATTTTGTTAAT 59.856 34.615 14.17 0.00 41.28 1.40
2434 2620 6.699204 TGACATGCGTGAACATTTTGTTAATT 59.301 30.769 14.17 0.00 41.28 1.40
2435 2621 7.223582 TGACATGCGTGAACATTTTGTTAATTT 59.776 29.630 14.17 0.00 41.28 1.82
2436 2622 8.581057 ACATGCGTGAACATTTTGTTAATTTA 57.419 26.923 14.17 0.00 41.28 1.40
2437 2623 9.035607 ACATGCGTGAACATTTTGTTAATTTAA 57.964 25.926 14.17 0.00 41.28 1.52
2440 2626 9.469807 TGCGTGAACATTTTGTTAATTTAATCT 57.530 25.926 0.00 0.00 41.28 2.40
2457 2643 9.956640 AATTTAATCTATGGTCAAAATTTGGCA 57.043 25.926 12.62 0.00 36.88 4.92
2458 2644 8.770438 TTTAATCTATGGTCAAAATTTGGCAC 57.230 30.769 12.62 1.03 36.88 5.01
2459 2645 4.433186 TCTATGGTCAAAATTTGGCACG 57.567 40.909 12.62 0.00 36.88 5.34
2460 2646 4.075682 TCTATGGTCAAAATTTGGCACGA 58.924 39.130 12.62 0.00 36.88 4.35
2461 2647 3.742433 ATGGTCAAAATTTGGCACGAA 57.258 38.095 12.62 0.00 36.88 3.85
2462 2648 3.526931 TGGTCAAAATTTGGCACGAAA 57.473 38.095 12.62 0.00 36.88 3.46
2463 2649 4.065321 TGGTCAAAATTTGGCACGAAAT 57.935 36.364 12.62 0.00 36.88 2.17
2464 2650 5.201713 TGGTCAAAATTTGGCACGAAATA 57.798 34.783 12.62 0.00 36.88 1.40
2465 2651 4.985409 TGGTCAAAATTTGGCACGAAATAC 59.015 37.500 12.62 0.00 36.88 1.89
2466 2652 4.985409 GGTCAAAATTTGGCACGAAATACA 59.015 37.500 12.62 0.00 36.88 2.29
2467 2653 5.463724 GGTCAAAATTTGGCACGAAATACAA 59.536 36.000 12.62 0.00 36.88 2.41
2468 2654 6.147000 GGTCAAAATTTGGCACGAAATACAAT 59.853 34.615 12.62 0.00 36.88 2.71
2469 2655 7.008859 GTCAAAATTTGGCACGAAATACAATG 58.991 34.615 5.33 0.00 34.79 2.82
2470 2656 6.146837 TCAAAATTTGGCACGAAATACAATGG 59.853 34.615 5.83 0.00 0.00 3.16
2471 2657 3.584406 TTTGGCACGAAATACAATGGG 57.416 42.857 0.00 0.00 0.00 4.00
2472 2658 1.468985 TGGCACGAAATACAATGGGG 58.531 50.000 0.00 0.00 0.00 4.96
2473 2659 1.004862 TGGCACGAAATACAATGGGGA 59.995 47.619 0.00 0.00 0.00 4.81
2474 2660 1.404035 GGCACGAAATACAATGGGGAC 59.596 52.381 0.00 0.00 0.00 4.46
2488 2674 3.179925 GGGACCAATAAACCCGGAC 57.820 57.895 0.73 0.00 34.03 4.79
2489 2675 0.745486 GGGACCAATAAACCCGGACG 60.745 60.000 0.73 0.00 34.03 4.79
2490 2676 0.745486 GGACCAATAAACCCGGACGG 60.745 60.000 0.73 3.25 37.81 4.79
2491 2677 0.249955 GACCAATAAACCCGGACGGA 59.750 55.000 13.13 0.00 37.50 4.69
2492 2678 0.251073 ACCAATAAACCCGGACGGAG 59.749 55.000 13.13 5.04 37.50 4.63
2493 2679 0.463116 CCAATAAACCCGGACGGAGG 60.463 60.000 13.13 0.00 37.50 4.30
2494 2680 0.251073 CAATAAACCCGGACGGAGGT 59.749 55.000 13.13 0.00 38.27 3.85
2495 2681 1.481772 CAATAAACCCGGACGGAGGTA 59.518 52.381 13.13 1.24 34.45 3.08
2496 2682 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
2497 2683 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
2498 2684 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.00 34.45 1.82
2499 2685 0.394899 AACCCGGACGGAGGTAGTAG 60.395 60.000 13.13 0.00 34.45 2.57
2500 2686 1.274703 ACCCGGACGGAGGTAGTAGA 61.275 60.000 13.13 0.00 37.50 2.59
2501 2687 0.110104 CCCGGACGGAGGTAGTAGAT 59.890 60.000 13.13 0.00 37.50 1.98
2502 2688 1.236628 CCGGACGGAGGTAGTAGATG 58.763 60.000 4.40 0.00 37.50 2.90
2509 2695 5.068723 GGACGGAGGTAGTAGATGAAAATGA 59.931 44.000 0.00 0.00 0.00 2.57
2510 2696 6.406624 GGACGGAGGTAGTAGATGAAAATGAA 60.407 42.308 0.00 0.00 0.00 2.57
2513 2699 6.073548 CGGAGGTAGTAGATGAAAATGAATGC 60.074 42.308 0.00 0.00 0.00 3.56
2534 2720 7.719689 ATGCATCTAAAACAAAAATACGTCG 57.280 32.000 0.00 0.00 0.00 5.12
2540 2726 8.721019 TCTAAAACAAAAATACGTCGGGATAT 57.279 30.769 0.00 0.00 0.00 1.63
2553 2739 4.798907 CGTCGGGATATATTCATTTCTCCG 59.201 45.833 0.00 0.00 32.51 4.63
2629 2940 0.948678 TTACCGCAGTGGAAAAGCAC 59.051 50.000 7.13 0.00 42.00 4.40
2675 2986 1.391485 CGAAACTGCCGAATGTCAGAG 59.609 52.381 0.00 0.00 34.57 3.35
2764 3081 1.801913 GTCTCAGTGGCGCACTACG 60.802 63.158 10.83 5.67 43.43 3.51
2802 3119 0.729140 GCTCATTGCGGGAAACAACG 60.729 55.000 0.00 0.00 0.00 4.10
2816 3133 0.655733 ACAACGTACACAGCAAGCAC 59.344 50.000 0.00 0.00 0.00 4.40
2877 3197 6.993878 CAGTATCATTTAACAACTGGAGTCG 58.006 40.000 0.00 0.00 35.12 4.18
3101 3438 3.118738 TCGCCTTTCCTGAAGTCTAATCC 60.119 47.826 0.00 0.00 33.29 3.01
3177 3514 2.478134 GCTGATAGCATGACCGACATTC 59.522 50.000 0.00 0.00 41.89 2.67
3406 3752 2.491693 TCCAATTCACCTTGATTTCGCC 59.508 45.455 0.00 0.00 0.00 5.54
3447 3793 1.899142 ACTCTCTCTTCTCCCTTGTGC 59.101 52.381 0.00 0.00 0.00 4.57
3527 3873 1.345415 TGAATGCTCTGTCTCTGTGCA 59.655 47.619 6.02 6.02 36.58 4.57
3554 3900 1.399714 TGTCTCGGTCAACTCTGTGT 58.600 50.000 0.00 0.00 0.00 3.72
3555 3901 1.067060 TGTCTCGGTCAACTCTGTGTG 59.933 52.381 0.00 0.00 0.00 3.82
3556 3902 0.032130 TCTCGGTCAACTCTGTGTGC 59.968 55.000 0.00 0.00 0.00 4.57
3557 3903 0.249447 CTCGGTCAACTCTGTGTGCA 60.249 55.000 0.00 0.00 0.00 4.57
3572 3918 3.445805 TGTGTGCATGCATGATTTCAGAT 59.554 39.130 30.64 0.00 0.00 2.90
3639 4012 3.247173 CAGCTTCTCTGAATTATCCGCAC 59.753 47.826 0.00 0.00 45.72 5.34
3652 4025 0.109272 TCCGCACTCACTCATTCGAC 60.109 55.000 0.00 0.00 0.00 4.20
3692 4065 1.228033 GGTTGTGCGGGTTAGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
3741 4114 6.817765 ACCGGTGGATTATATTTGCTTATG 57.182 37.500 6.12 0.00 0.00 1.90
3934 4307 7.650504 GGGTGTTGTTTAGTGGTTTCTTAATTC 59.349 37.037 0.00 0.00 0.00 2.17
3971 4344 0.309922 GGTGCTGCATCCAATCATCG 59.690 55.000 5.27 0.00 0.00 3.84
3984 4357 1.453155 ATCATCGGAAACCTGCACAC 58.547 50.000 0.00 0.00 0.00 3.82
4047 4423 1.550524 TGGGGTGAGAAAGTCAGATCG 59.449 52.381 0.00 0.00 35.13 3.69
4153 4539 2.142292 AACCTTACTGGCTGCCCCTG 62.142 60.000 17.53 8.99 40.22 4.45
4157 4543 0.326927 TTACTGGCTGCCCCTGTAAC 59.673 55.000 17.53 0.00 46.69 2.50
4162 4548 1.153249 GCTGCCCCTGTAACGCATA 60.153 57.895 0.00 0.00 0.00 3.14
4163 4549 0.746563 GCTGCCCCTGTAACGCATAA 60.747 55.000 0.00 0.00 0.00 1.90
4165 4551 2.297701 CTGCCCCTGTAACGCATAATT 58.702 47.619 0.00 0.00 0.00 1.40
4245 4651 4.462483 TGTTCTTAACCTCATTTCATGGGC 59.538 41.667 0.00 0.00 0.00 5.36
4263 4669 1.860484 GCCTCTCCACAGTTGCTTGC 61.860 60.000 0.00 0.00 0.00 4.01
4268 4674 1.884579 CTCCACAGTTGCTTGCAGAAT 59.115 47.619 0.00 0.00 0.00 2.40
4293 4699 5.691508 GCAAGTTCATGCAATACATCAAC 57.308 39.130 0.00 0.00 45.70 3.18
4295 4701 5.808540 GCAAGTTCATGCAATACATCAACAT 59.191 36.000 0.00 0.00 41.84 2.71
4296 4702 6.237728 GCAAGTTCATGCAATACATCAACATG 60.238 38.462 0.00 0.00 41.84 3.21
4297 4703 5.345702 AGTTCATGCAATACATCAACATGC 58.654 37.500 0.00 0.00 41.84 4.06
4298 4704 3.954999 TCATGCAATACATCAACATGCG 58.045 40.909 0.00 0.00 39.81 4.73
4299 4705 3.626670 TCATGCAATACATCAACATGCGA 59.373 39.130 0.00 0.00 39.81 5.10
4300 4706 3.678915 TGCAATACATCAACATGCGAG 57.321 42.857 0.00 0.00 39.81 5.03
4301 4707 2.355444 TGCAATACATCAACATGCGAGG 59.645 45.455 0.00 0.00 39.81 4.63
4302 4708 2.613595 GCAATACATCAACATGCGAGGA 59.386 45.455 4.58 0.00 32.57 3.71
4303 4709 3.303593 GCAATACATCAACATGCGAGGAG 60.304 47.826 4.58 0.00 32.57 3.69
4304 4710 2.602257 TACATCAACATGCGAGGAGG 57.398 50.000 4.58 0.00 32.57 4.30
4305 4711 0.107508 ACATCAACATGCGAGGAGGG 60.108 55.000 4.58 0.00 32.57 4.30
4306 4712 0.178767 CATCAACATGCGAGGAGGGA 59.821 55.000 0.00 0.00 0.00 4.20
4307 4713 0.467384 ATCAACATGCGAGGAGGGAG 59.533 55.000 0.00 0.00 0.00 4.30
4348 4754 0.786435 AATGGGAGTTGGCTTCCCTT 59.214 50.000 18.61 12.14 43.89 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.728102 TCGTGGCTTGGTACGGCG 62.728 66.667 4.80 4.80 40.48 6.46
6 7 1.908066 CTTTCGTGGCTTGGTACGGC 61.908 60.000 0.00 0.00 40.48 5.68
7 8 1.296056 CCTTTCGTGGCTTGGTACGG 61.296 60.000 0.00 0.00 40.48 4.02
8 9 0.320073 TCCTTTCGTGGCTTGGTACG 60.320 55.000 0.00 0.00 41.38 3.67
9 10 1.886886 TTCCTTTCGTGGCTTGGTAC 58.113 50.000 0.00 0.00 0.00 3.34
10 11 2.039216 TGATTCCTTTCGTGGCTTGGTA 59.961 45.455 0.00 0.00 0.00 3.25
11 12 1.202879 TGATTCCTTTCGTGGCTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
12 13 1.200020 GTGATTCCTTTCGTGGCTTGG 59.800 52.381 0.00 0.00 0.00 3.61
13 14 1.879380 TGTGATTCCTTTCGTGGCTTG 59.121 47.619 0.00 0.00 0.00 4.01
14 15 2.270352 TGTGATTCCTTTCGTGGCTT 57.730 45.000 0.00 0.00 0.00 4.35
15 16 2.496899 ATGTGATTCCTTTCGTGGCT 57.503 45.000 0.00 0.00 0.00 4.75
16 17 3.063997 CACTATGTGATTCCTTTCGTGGC 59.936 47.826 0.00 0.00 35.23 5.01
17 18 4.253685 ACACTATGTGATTCCTTTCGTGG 58.746 43.478 4.61 0.00 36.96 4.94
18 19 6.100004 ACTACACTATGTGATTCCTTTCGTG 58.900 40.000 4.61 0.00 36.96 4.35
19 20 6.282199 ACTACACTATGTGATTCCTTTCGT 57.718 37.500 4.61 0.00 36.96 3.85
20 21 6.414109 CGTACTACACTATGTGATTCCTTTCG 59.586 42.308 4.61 0.00 36.96 3.46
21 22 7.256286 ACGTACTACACTATGTGATTCCTTTC 58.744 38.462 4.61 0.00 36.96 2.62
22 23 7.166691 ACGTACTACACTATGTGATTCCTTT 57.833 36.000 4.61 0.00 36.96 3.11
23 24 6.770746 ACGTACTACACTATGTGATTCCTT 57.229 37.500 4.61 0.00 36.96 3.36
24 25 7.052873 AGTACGTACTACACTATGTGATTCCT 58.947 38.462 26.36 0.00 36.96 3.36
25 26 7.256756 AGTACGTACTACACTATGTGATTCC 57.743 40.000 26.36 0.00 36.96 3.01
48 49 4.273969 GCCTGCTCACTACAGTACTAGTAG 59.726 50.000 21.21 21.21 43.51 2.57
49 50 4.197750 GCCTGCTCACTACAGTACTAGTA 58.802 47.826 0.00 0.00 33.09 1.82
50 51 3.018149 GCCTGCTCACTACAGTACTAGT 58.982 50.000 0.00 0.00 33.09 2.57
51 52 3.017442 TGCCTGCTCACTACAGTACTAG 58.983 50.000 0.00 0.00 33.09 2.57
52 53 3.081710 TGCCTGCTCACTACAGTACTA 57.918 47.619 0.00 0.00 33.09 1.82
53 54 1.924731 TGCCTGCTCACTACAGTACT 58.075 50.000 0.00 0.00 33.09 2.73
54 55 2.338500 GTTGCCTGCTCACTACAGTAC 58.662 52.381 0.00 0.00 33.09 2.73
55 56 1.275291 GGTTGCCTGCTCACTACAGTA 59.725 52.381 0.00 0.00 33.09 2.74
56 57 0.035458 GGTTGCCTGCTCACTACAGT 59.965 55.000 0.00 0.00 33.09 3.55
57 58 0.322975 AGGTTGCCTGCTCACTACAG 59.677 55.000 0.00 0.00 29.57 2.74
58 59 1.550524 CTAGGTTGCCTGCTCACTACA 59.449 52.381 0.00 0.00 34.61 2.74
59 60 1.825474 TCTAGGTTGCCTGCTCACTAC 59.175 52.381 0.00 0.00 34.61 2.73
60 61 2.231716 TCTAGGTTGCCTGCTCACTA 57.768 50.000 0.00 0.00 34.61 2.74
74 75 4.519350 TGGCACTACATTACGAGATCTAGG 59.481 45.833 7.79 0.00 0.00 3.02
76 77 5.768164 TGATGGCACTACATTACGAGATCTA 59.232 40.000 0.00 0.00 0.00 1.98
87 88 5.536161 GGTTCCATTTATGATGGCACTACAT 59.464 40.000 10.76 0.00 39.01 2.29
97 98 6.826231 TCATTGTACGTGGTTCCATTTATGAT 59.174 34.615 0.00 0.00 0.00 2.45
110 111 1.197055 CGATCGGTCATTGTACGTGG 58.803 55.000 7.38 0.00 0.00 4.94
132 133 2.196742 TCTGGAACCTCCCTGCATAT 57.803 50.000 0.00 0.00 35.03 1.78
145 146 6.599356 TGTTGTGCTAGTACTAATCTGGAA 57.401 37.500 12.42 0.00 0.00 3.53
172 173 0.671472 GTTTCGAACCCACCTACCCG 60.671 60.000 0.00 0.00 0.00 5.28
180 181 4.011023 TCTTTTTGTCTGTTTCGAACCCA 58.989 39.130 0.00 0.00 0.00 4.51
200 201 2.169352 CACTGTCAAATCGATCCCCTCT 59.831 50.000 0.00 0.00 0.00 3.69
243 251 0.805711 CTGTGCTGTGTGTGTGTCGA 60.806 55.000 0.00 0.00 0.00 4.20
304 321 7.009631 ACGATAAGAAGATGTCAACTGAATTCG 59.990 37.037 0.04 0.00 0.00 3.34
385 410 2.676463 GCTCTCGGAAGAAGCAAGATGT 60.676 50.000 0.00 0.00 41.05 3.06
432 462 6.683110 GCTCCGGTTCTAGAATTAGAATCACA 60.683 42.308 8.75 0.00 44.05 3.58
433 463 5.692654 GCTCCGGTTCTAGAATTAGAATCAC 59.307 44.000 8.75 0.00 44.05 3.06
434 464 5.507482 CGCTCCGGTTCTAGAATTAGAATCA 60.507 44.000 8.75 0.00 44.05 2.57
435 465 4.918583 CGCTCCGGTTCTAGAATTAGAATC 59.081 45.833 8.75 0.00 45.15 2.52
503 541 2.235402 TCACCCGACTTCCTTTCCATAC 59.765 50.000 0.00 0.00 0.00 2.39
626 681 4.185413 CTCACGATCGTGGGTTGG 57.815 61.111 39.34 23.24 45.43 3.77
733 790 8.604035 CATACATACAGTTATCAAAGTGTGTCC 58.396 37.037 8.49 0.00 46.44 4.02
734 791 9.151471 ACATACATACAGTTATCAAAGTGTGTC 57.849 33.333 8.49 0.00 46.44 3.67
743 800 9.197306 ACCAGAAGTACATACATACAGTTATCA 57.803 33.333 0.00 0.00 0.00 2.15
746 803 7.762615 GCAACCAGAAGTACATACATACAGTTA 59.237 37.037 0.00 0.00 0.00 2.24
748 805 6.106673 GCAACCAGAAGTACATACATACAGT 58.893 40.000 0.00 0.00 0.00 3.55
749 806 5.523916 GGCAACCAGAAGTACATACATACAG 59.476 44.000 0.00 0.00 0.00 2.74
750 807 5.046231 TGGCAACCAGAAGTACATACATACA 60.046 40.000 0.00 0.00 0.00 2.29
751 808 5.424757 TGGCAACCAGAAGTACATACATAC 58.575 41.667 0.00 0.00 0.00 2.39
753 810 4.568072 TGGCAACCAGAAGTACATACAT 57.432 40.909 0.00 0.00 0.00 2.29
754 811 4.019771 TCATGGCAACCAGAAGTACATACA 60.020 41.667 0.00 0.00 36.75 2.29
755 812 4.513442 TCATGGCAACCAGAAGTACATAC 58.487 43.478 0.00 0.00 36.75 2.39
757 814 3.719268 TCATGGCAACCAGAAGTACAT 57.281 42.857 0.00 0.00 36.75 2.29
762 842 1.468565 CGCAATCATGGCAACCAGAAG 60.469 52.381 0.00 0.00 36.75 2.85
767 847 1.226773 GCTCGCAATCATGGCAACC 60.227 57.895 0.00 0.00 0.00 3.77
779 859 2.108157 ACCGTTTCACAGCTCGCA 59.892 55.556 0.00 0.00 0.00 5.10
780 860 2.551270 CACCGTTTCACAGCTCGC 59.449 61.111 0.00 0.00 0.00 5.03
782 862 0.249911 ACTCCACCGTTTCACAGCTC 60.250 55.000 0.00 0.00 0.00 4.09
783 863 0.249911 GACTCCACCGTTTCACAGCT 60.250 55.000 0.00 0.00 0.00 4.24
785 865 1.605712 GGAGACTCCACCGTTTCACAG 60.606 57.143 17.10 0.00 36.28 3.66
787 867 0.666577 CGGAGACTCCACCGTTTCAC 60.667 60.000 21.49 0.00 43.53 3.18
788 868 1.663739 CGGAGACTCCACCGTTTCA 59.336 57.895 21.49 0.00 43.53 2.69
789 869 4.573162 CGGAGACTCCACCGTTTC 57.427 61.111 21.49 0.00 43.53 2.78
802 882 1.079543 CAGGAGAGCCAACACGGAG 60.080 63.158 0.00 0.00 36.56 4.63
822 902 3.071167 AGTTTCTGGTTACTCCACTCACC 59.929 47.826 0.00 0.00 41.93 4.02
830 910 2.350484 GGCGCAAAGTTTCTGGTTACTC 60.350 50.000 10.83 0.00 0.00 2.59
831 911 1.607148 GGCGCAAAGTTTCTGGTTACT 59.393 47.619 10.83 0.00 0.00 2.24
833 913 0.955905 GGGCGCAAAGTTTCTGGTTA 59.044 50.000 10.83 0.00 0.00 2.85
834 914 1.739667 GGGCGCAAAGTTTCTGGTT 59.260 52.632 10.83 0.00 0.00 3.67
835 915 2.551912 CGGGCGCAAAGTTTCTGGT 61.552 57.895 10.83 0.00 0.00 4.00
852 932 3.361051 CGTCTGCGTGTGAATAATGATCG 60.361 47.826 0.00 0.00 0.00 3.69
856 936 2.029244 GTCCGTCTGCGTGTGAATAATG 59.971 50.000 0.00 0.00 36.15 1.90
877 957 3.865929 ATTGCCGAGATAGCGCCCG 62.866 63.158 2.29 0.00 0.00 6.13
878 958 2.031163 ATTGCCGAGATAGCGCCC 59.969 61.111 2.29 0.00 0.00 6.13
879 959 2.320587 CCATTGCCGAGATAGCGCC 61.321 63.158 2.29 0.00 0.00 6.53
880 960 1.287730 CTCCATTGCCGAGATAGCGC 61.288 60.000 0.00 0.00 0.00 5.92
966 1066 2.536761 CGAGGGGCGTATTTTATGGA 57.463 50.000 0.00 0.00 34.64 3.41
1002 1102 1.001503 CTGCAGGAGAGGAGGAGGT 59.998 63.158 5.57 0.00 0.00 3.85
1003 1103 0.617249 AACTGCAGGAGAGGAGGAGG 60.617 60.000 19.93 0.00 0.00 4.30
1005 1105 1.270907 GAAACTGCAGGAGAGGAGGA 58.729 55.000 19.93 0.00 0.00 3.71
1006 1106 0.251634 GGAAACTGCAGGAGAGGAGG 59.748 60.000 19.93 0.00 0.00 4.30
1007 1107 1.274712 AGGAAACTGCAGGAGAGGAG 58.725 55.000 19.93 0.00 41.13 3.69
1010 1110 1.627834 AGGAAGGAAACTGCAGGAGAG 59.372 52.381 19.93 0.00 42.68 3.20
1011 1111 1.734655 AGGAAGGAAACTGCAGGAGA 58.265 50.000 19.93 0.00 42.68 3.71
1017 1125 8.880878 TTGTTTTATAAAAGGAAGGAAACTGC 57.119 30.769 10.92 0.00 42.68 4.40
1083 1196 1.001517 TCTGCCTCTGCTCGACTCT 60.002 57.895 0.00 0.00 38.71 3.24
1084 1197 1.138671 GTCTGCCTCTGCTCGACTC 59.861 63.158 0.00 0.00 36.41 3.36
1085 1198 1.594194 CTGTCTGCCTCTGCTCGACT 61.594 60.000 0.00 0.00 38.54 4.18
1086 1199 1.153862 CTGTCTGCCTCTGCTCGAC 60.154 63.158 0.00 0.00 38.36 4.20
1087 1200 1.303643 TCTGTCTGCCTCTGCTCGA 60.304 57.895 0.00 0.00 38.71 4.04
1097 1210 2.505118 GAGGCGTCGTCTGTCTGC 60.505 66.667 2.89 0.00 0.00 4.26
1098 1211 2.179517 GGAGGCGTCGTCTGTCTG 59.820 66.667 2.89 0.00 0.00 3.51
1099 1212 3.063084 GGGAGGCGTCGTCTGTCT 61.063 66.667 2.89 0.00 0.00 3.41
1100 1213 3.053849 GAGGGAGGCGTCGTCTGTC 62.054 68.421 2.89 0.00 0.00 3.51
1101 1214 3.063084 GAGGGAGGCGTCGTCTGT 61.063 66.667 2.89 0.00 0.00 3.41
1102 1215 2.549611 CTTGAGGGAGGCGTCGTCTG 62.550 65.000 2.89 0.00 0.00 3.51
1103 1216 2.282958 TTGAGGGAGGCGTCGTCT 60.283 61.111 0.00 0.00 0.00 4.18
1104 1217 1.874345 TTCTTGAGGGAGGCGTCGTC 61.874 60.000 0.00 0.00 0.00 4.20
1105 1218 1.258445 ATTCTTGAGGGAGGCGTCGT 61.258 55.000 0.00 0.00 0.00 4.34
1106 1219 0.528684 GATTCTTGAGGGAGGCGTCG 60.529 60.000 0.00 0.00 0.00 5.12
1107 1220 0.537188 TGATTCTTGAGGGAGGCGTC 59.463 55.000 0.00 0.00 0.00 5.19
1108 1221 0.984230 TTGATTCTTGAGGGAGGCGT 59.016 50.000 0.00 0.00 0.00 5.68
1109 1222 1.208052 TCTTGATTCTTGAGGGAGGCG 59.792 52.381 0.00 0.00 0.00 5.52
1110 1223 2.637947 GTCTTGATTCTTGAGGGAGGC 58.362 52.381 0.00 0.00 0.00 4.70
1111 1224 2.573462 TGGTCTTGATTCTTGAGGGAGG 59.427 50.000 0.00 0.00 0.00 4.30
1112 1225 3.988976 TGGTCTTGATTCTTGAGGGAG 57.011 47.619 0.00 0.00 0.00 4.30
1113 1226 4.141274 TGTTTGGTCTTGATTCTTGAGGGA 60.141 41.667 0.00 0.00 0.00 4.20
1114 1227 4.022849 GTGTTTGGTCTTGATTCTTGAGGG 60.023 45.833 0.00 0.00 0.00 4.30
1115 1228 4.319766 CGTGTTTGGTCTTGATTCTTGAGG 60.320 45.833 0.00 0.00 0.00 3.86
1116 1229 4.776743 CGTGTTTGGTCTTGATTCTTGAG 58.223 43.478 0.00 0.00 0.00 3.02
1117 1230 3.003275 GCGTGTTTGGTCTTGATTCTTGA 59.997 43.478 0.00 0.00 0.00 3.02
1124 1237 2.539338 GGCGCGTGTTTGGTCTTGA 61.539 57.895 8.43 0.00 0.00 3.02
1184 1297 2.915659 TTCGGTCTCGGTGGTGCT 60.916 61.111 0.00 0.00 36.95 4.40
1188 1301 3.685214 CTCGCTTCGGTCTCGGTGG 62.685 68.421 0.00 0.00 36.95 4.61
1189 1302 2.202492 CTCGCTTCGGTCTCGGTG 60.202 66.667 0.00 0.00 36.95 4.94
1190 1303 2.359602 TCTCGCTTCGGTCTCGGT 60.360 61.111 0.00 0.00 36.95 4.69
1191 1304 2.042520 CTCTCTCGCTTCGGTCTCGG 62.043 65.000 0.00 0.00 36.95 4.63
1192 1305 1.350319 CTCTCTCGCTTCGGTCTCG 59.650 63.158 0.00 0.00 37.82 4.04
1193 1306 0.745128 TCCTCTCTCGCTTCGGTCTC 60.745 60.000 0.00 0.00 0.00 3.36
1194 1307 0.746563 CTCCTCTCTCGCTTCGGTCT 60.747 60.000 0.00 0.00 0.00 3.85
1195 1308 0.745128 TCTCCTCTCTCGCTTCGGTC 60.745 60.000 0.00 0.00 0.00 4.79
1196 1309 0.746563 CTCTCCTCTCTCGCTTCGGT 60.747 60.000 0.00 0.00 0.00 4.69
1197 1310 1.444119 CCTCTCCTCTCTCGCTTCGG 61.444 65.000 0.00 0.00 0.00 4.30
1198 1311 0.462937 TCCTCTCCTCTCTCGCTTCG 60.463 60.000 0.00 0.00 0.00 3.79
1199 1312 1.308998 CTCCTCTCCTCTCTCGCTTC 58.691 60.000 0.00 0.00 0.00 3.86
1200 1313 0.106719 CCTCCTCTCCTCTCTCGCTT 60.107 60.000 0.00 0.00 0.00 4.68
1201 1314 0.986019 TCCTCCTCTCCTCTCTCGCT 60.986 60.000 0.00 0.00 0.00 4.93
1202 1315 0.535102 CTCCTCCTCTCCTCTCTCGC 60.535 65.000 0.00 0.00 0.00 5.03
1203 1316 0.535102 GCTCCTCCTCTCCTCTCTCG 60.535 65.000 0.00 0.00 0.00 4.04
1204 1317 0.535102 CGCTCCTCCTCTCCTCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
1205 1318 0.986019 TCGCTCCTCCTCTCCTCTCT 60.986 60.000 0.00 0.00 0.00 3.10
1206 1319 0.110486 ATCGCTCCTCCTCTCCTCTC 59.890 60.000 0.00 0.00 0.00 3.20
1207 1320 0.178992 CATCGCTCCTCCTCTCCTCT 60.179 60.000 0.00 0.00 0.00 3.69
1208 1321 1.178534 CCATCGCTCCTCCTCTCCTC 61.179 65.000 0.00 0.00 0.00 3.71
1209 1322 1.152567 CCATCGCTCCTCCTCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
1210 1323 2.206536 CCCATCGCTCCTCCTCTCC 61.207 68.421 0.00 0.00 0.00 3.71
1211 1324 2.206536 CCCCATCGCTCCTCCTCTC 61.207 68.421 0.00 0.00 0.00 3.20
1212 1325 2.123077 CCCCATCGCTCCTCCTCT 60.123 66.667 0.00 0.00 0.00 3.69
1213 1326 1.762460 TTCCCCATCGCTCCTCCTC 60.762 63.158 0.00 0.00 0.00 3.71
1214 1327 2.066999 GTTCCCCATCGCTCCTCCT 61.067 63.158 0.00 0.00 0.00 3.69
1220 1333 1.033746 CAATGCTGTTCCCCATCGCT 61.034 55.000 0.00 0.00 0.00 4.93
1615 1737 4.849329 CCGAGACACCGTAGCCGC 62.849 72.222 0.00 0.00 0.00 6.53
1646 1774 3.066190 CTGAGTCGCACGGGGGTA 61.066 66.667 0.09 0.00 0.00 3.69
1658 1786 3.474570 GGGAGCCGCATCCTGAGT 61.475 66.667 8.27 0.00 39.50 3.41
1994 2143 1.068832 CAGTGATGCAATGCACGTGC 61.069 55.000 33.11 33.11 43.04 5.34
2041 2190 7.105494 TCTGTCGAACGAATATAATTCATGC 57.895 36.000 0.00 0.00 0.00 4.06
2060 2217 4.388469 GCAGATCTTGTTCAGAGTTCTGTC 59.612 45.833 8.85 5.01 44.12 3.51
2153 2338 0.449388 GCTGCAAGGGACGAATTCTG 59.551 55.000 3.52 0.00 0.00 3.02
2166 2351 9.836864 TCTTCTTCTAGAATATAATTGCTGCAA 57.163 29.630 18.43 18.43 33.13 4.08
2219 2405 2.891580 GCGATGGAGGAAGTAGGATACA 59.108 50.000 0.00 0.00 46.26 2.29
2224 2410 0.744874 TTCGCGATGGAGGAAGTAGG 59.255 55.000 10.88 0.00 0.00 3.18
2230 2416 2.167693 ACAAGTATTTCGCGATGGAGGA 59.832 45.455 10.88 0.00 0.00 3.71
2239 2425 9.474249 GTAGTATTTCTCAAACAAGTATTTCGC 57.526 33.333 0.00 0.00 0.00 4.70
2240 2426 9.968743 GGTAGTATTTCTCAAACAAGTATTTCG 57.031 33.333 0.00 0.00 0.00 3.46
2253 2439 4.246712 AGGACCGAGGTAGTATTTCTCA 57.753 45.455 0.00 0.00 0.00 3.27
2261 2447 2.610438 TAACCAAGGACCGAGGTAGT 57.390 50.000 10.79 0.60 34.63 2.73
2262 2448 3.573110 CCTATAACCAAGGACCGAGGTAG 59.427 52.174 10.79 5.73 36.08 3.18
2263 2449 3.052642 ACCTATAACCAAGGACCGAGGTA 60.053 47.826 10.79 0.00 37.57 3.08
2264 2450 2.292719 ACCTATAACCAAGGACCGAGGT 60.293 50.000 5.18 5.18 37.57 3.85
2265 2451 2.364647 GACCTATAACCAAGGACCGAGG 59.635 54.545 3.93 3.93 37.57 4.63
2266 2452 2.364647 GGACCTATAACCAAGGACCGAG 59.635 54.545 0.00 0.00 38.80 4.63
2267 2453 2.391678 GGACCTATAACCAAGGACCGA 58.608 52.381 0.00 0.00 38.80 4.69
2268 2454 2.904697 GGACCTATAACCAAGGACCG 57.095 55.000 0.00 0.00 38.80 4.79
2269 2455 3.655384 AGAGGACCTATAACCAAGGACC 58.345 50.000 0.00 2.88 45.82 4.46
2270 2456 5.045797 ACAAAGAGGACCTATAACCAAGGAC 60.046 44.000 0.00 0.00 37.57 3.85
2271 2457 5.098663 ACAAAGAGGACCTATAACCAAGGA 58.901 41.667 0.00 0.00 37.57 3.36
2273 2459 7.184067 ACTACAAAGAGGACCTATAACCAAG 57.816 40.000 0.00 0.00 0.00 3.61
2275 2461 7.016858 ACAAACTACAAAGAGGACCTATAACCA 59.983 37.037 0.00 0.00 0.00 3.67
2276 2462 7.333672 CACAAACTACAAAGAGGACCTATAACC 59.666 40.741 0.00 0.00 0.00 2.85
2277 2463 7.148457 GCACAAACTACAAAGAGGACCTATAAC 60.148 40.741 0.00 0.00 0.00 1.89
2278 2464 6.877322 GCACAAACTACAAAGAGGACCTATAA 59.123 38.462 0.00 0.00 0.00 0.98
2279 2465 6.403878 GCACAAACTACAAAGAGGACCTATA 58.596 40.000 0.00 0.00 0.00 1.31
2280 2466 5.246307 GCACAAACTACAAAGAGGACCTAT 58.754 41.667 0.00 0.00 0.00 2.57
2281 2467 4.504340 GGCACAAACTACAAAGAGGACCTA 60.504 45.833 0.00 0.00 0.00 3.08
2282 2468 3.477530 GCACAAACTACAAAGAGGACCT 58.522 45.455 0.00 0.00 0.00 3.85
2283 2469 2.552743 GGCACAAACTACAAAGAGGACC 59.447 50.000 0.00 0.00 0.00 4.46
2284 2470 3.211045 TGGCACAAACTACAAAGAGGAC 58.789 45.455 0.00 0.00 31.92 3.85
2285 2471 3.569194 TGGCACAAACTACAAAGAGGA 57.431 42.857 0.00 0.00 31.92 3.71
2299 2485 9.823647 TTAAATCTTTAGTCAAAATTTGGCACA 57.176 25.926 13.11 0.00 37.85 4.57
2324 2510 9.539825 TTGACATGCATTAACAATTTGTTAGTT 57.460 25.926 18.56 10.26 42.93 2.24
2325 2511 9.539825 TTTGACATGCATTAACAATTTGTTAGT 57.460 25.926 18.56 14.61 42.93 2.24
2357 2543 9.389755 TGTTCAAATACGAATCCAATGAGATAA 57.610 29.630 0.00 0.00 0.00 1.75
2358 2544 8.956533 TGTTCAAATACGAATCCAATGAGATA 57.043 30.769 0.00 0.00 0.00 1.98
2359 2545 7.864108 TGTTCAAATACGAATCCAATGAGAT 57.136 32.000 0.00 0.00 0.00 2.75
2360 2546 7.864108 ATGTTCAAATACGAATCCAATGAGA 57.136 32.000 0.00 0.00 0.00 3.27
2361 2547 8.830580 ACTATGTTCAAATACGAATCCAATGAG 58.169 33.333 0.00 0.00 0.00 2.90
2362 2548 8.731275 ACTATGTTCAAATACGAATCCAATGA 57.269 30.769 0.00 0.00 0.00 2.57
2363 2549 9.787532 AAACTATGTTCAAATACGAATCCAATG 57.212 29.630 0.00 0.00 0.00 2.82
2365 2551 9.834628 GAAAACTATGTTCAAATACGAATCCAA 57.165 29.630 0.00 0.00 0.00 3.53
2366 2552 9.004717 TGAAAACTATGTTCAAATACGAATCCA 57.995 29.630 0.00 0.00 32.13 3.41
2367 2553 9.834628 TTGAAAACTATGTTCAAATACGAATCC 57.165 29.630 0.00 0.00 40.96 3.01
2385 2571 9.442047 TCACCAAACATTGTATTTTTGAAAACT 57.558 25.926 0.00 0.00 32.91 2.66
2386 2572 9.484326 GTCACCAAACATTGTATTTTTGAAAAC 57.516 29.630 0.00 0.00 32.91 2.43
2387 2573 9.219603 TGTCACCAAACATTGTATTTTTGAAAA 57.780 25.926 1.41 0.00 32.91 2.29
2388 2574 8.777865 TGTCACCAAACATTGTATTTTTGAAA 57.222 26.923 1.41 0.00 32.91 2.69
2389 2575 8.824781 CATGTCACCAAACATTGTATTTTTGAA 58.175 29.630 1.41 0.00 37.78 2.69
2390 2576 7.042187 GCATGTCACCAAACATTGTATTTTTGA 60.042 33.333 0.00 0.00 37.78 2.69
2391 2577 7.070798 GCATGTCACCAAACATTGTATTTTTG 58.929 34.615 0.00 0.00 37.78 2.44
2392 2578 6.073873 CGCATGTCACCAAACATTGTATTTTT 60.074 34.615 0.00 0.00 37.78 1.94
2393 2579 5.404968 CGCATGTCACCAAACATTGTATTTT 59.595 36.000 0.00 0.00 37.78 1.82
2394 2580 4.922692 CGCATGTCACCAAACATTGTATTT 59.077 37.500 0.00 0.00 37.78 1.40
2395 2581 4.022416 ACGCATGTCACCAAACATTGTATT 60.022 37.500 0.00 0.00 37.78 1.89
2396 2582 3.505680 ACGCATGTCACCAAACATTGTAT 59.494 39.130 0.00 0.00 37.78 2.29
2397 2583 2.881513 ACGCATGTCACCAAACATTGTA 59.118 40.909 0.00 0.00 37.78 2.41
2398 2584 1.680735 ACGCATGTCACCAAACATTGT 59.319 42.857 0.00 0.00 37.78 2.71
2399 2585 2.052891 CACGCATGTCACCAAACATTG 58.947 47.619 0.00 0.00 37.78 2.82
2400 2586 1.952990 TCACGCATGTCACCAAACATT 59.047 42.857 0.00 0.00 37.78 2.71
2401 2587 1.603456 TCACGCATGTCACCAAACAT 58.397 45.000 0.00 0.00 40.49 2.71
2402 2588 1.064803 GTTCACGCATGTCACCAAACA 59.935 47.619 0.00 0.00 0.00 2.83
2403 2589 1.064803 TGTTCACGCATGTCACCAAAC 59.935 47.619 0.00 0.00 0.00 2.93
2404 2590 1.383523 TGTTCACGCATGTCACCAAA 58.616 45.000 0.00 0.00 0.00 3.28
2405 2591 1.603456 ATGTTCACGCATGTCACCAA 58.397 45.000 0.00 0.00 0.00 3.67
2406 2592 1.603456 AATGTTCACGCATGTCACCA 58.397 45.000 0.00 0.00 0.00 4.17
2407 2593 2.704725 AAATGTTCACGCATGTCACC 57.295 45.000 0.00 0.00 0.00 4.02
2408 2594 3.371168 ACAAAATGTTCACGCATGTCAC 58.629 40.909 0.00 0.00 0.00 3.67
2409 2595 3.706802 ACAAAATGTTCACGCATGTCA 57.293 38.095 0.00 0.00 0.00 3.58
2410 2596 6.689178 ATTAACAAAATGTTCACGCATGTC 57.311 33.333 0.00 0.00 40.22 3.06
2411 2597 7.475771 AAATTAACAAAATGTTCACGCATGT 57.524 28.000 0.00 0.00 40.22 3.21
2414 2600 9.469807 AGATTAAATTAACAAAATGTTCACGCA 57.530 25.926 0.00 0.00 40.22 5.24
2431 2617 9.956640 TGCCAAATTTTGACCATAGATTAAATT 57.043 25.926 10.72 0.00 0.00 1.82
2432 2618 9.382275 GTGCCAAATTTTGACCATAGATTAAAT 57.618 29.630 10.72 0.00 0.00 1.40
2433 2619 7.543868 CGTGCCAAATTTTGACCATAGATTAAA 59.456 33.333 10.72 0.00 0.00 1.52
2434 2620 7.032580 CGTGCCAAATTTTGACCATAGATTAA 58.967 34.615 10.72 0.00 0.00 1.40
2435 2621 6.375736 TCGTGCCAAATTTTGACCATAGATTA 59.624 34.615 10.72 0.00 0.00 1.75
2436 2622 5.184864 TCGTGCCAAATTTTGACCATAGATT 59.815 36.000 10.72 0.00 0.00 2.40
2437 2623 4.704540 TCGTGCCAAATTTTGACCATAGAT 59.295 37.500 10.72 0.00 0.00 1.98
2438 2624 4.075682 TCGTGCCAAATTTTGACCATAGA 58.924 39.130 10.72 8.13 0.00 1.98
2439 2625 4.433186 TCGTGCCAAATTTTGACCATAG 57.567 40.909 10.72 6.37 0.00 2.23
2440 2626 4.855715 TTCGTGCCAAATTTTGACCATA 57.144 36.364 10.72 0.00 0.00 2.74
2441 2627 3.742433 TTCGTGCCAAATTTTGACCAT 57.258 38.095 10.72 0.00 0.00 3.55
2442 2628 3.526931 TTTCGTGCCAAATTTTGACCA 57.473 38.095 10.72 4.80 0.00 4.02
2443 2629 4.985409 TGTATTTCGTGCCAAATTTTGACC 59.015 37.500 10.72 2.35 0.00 4.02
2444 2630 6.517914 TTGTATTTCGTGCCAAATTTTGAC 57.482 33.333 10.72 0.00 0.00 3.18
2445 2631 6.146837 CCATTGTATTTCGTGCCAAATTTTGA 59.853 34.615 10.72 0.00 0.00 2.69
2446 2632 6.305639 CCATTGTATTTCGTGCCAAATTTTG 58.694 36.000 1.99 1.99 0.00 2.44
2447 2633 5.411053 CCCATTGTATTTCGTGCCAAATTTT 59.589 36.000 0.00 0.00 0.00 1.82
2448 2634 4.934602 CCCATTGTATTTCGTGCCAAATTT 59.065 37.500 0.00 0.00 0.00 1.82
2449 2635 4.502962 CCCATTGTATTTCGTGCCAAATT 58.497 39.130 0.00 0.00 0.00 1.82
2450 2636 3.118811 CCCCATTGTATTTCGTGCCAAAT 60.119 43.478 0.00 0.00 0.00 2.32
2451 2637 2.232452 CCCCATTGTATTTCGTGCCAAA 59.768 45.455 0.00 0.00 0.00 3.28
2452 2638 1.821753 CCCCATTGTATTTCGTGCCAA 59.178 47.619 0.00 0.00 0.00 4.52
2453 2639 1.004862 TCCCCATTGTATTTCGTGCCA 59.995 47.619 0.00 0.00 0.00 4.92
2454 2640 1.404035 GTCCCCATTGTATTTCGTGCC 59.596 52.381 0.00 0.00 0.00 5.01
2455 2641 1.404035 GGTCCCCATTGTATTTCGTGC 59.596 52.381 0.00 0.00 0.00 5.34
2456 2642 2.717390 TGGTCCCCATTGTATTTCGTG 58.283 47.619 0.00 0.00 0.00 4.35
2457 2643 3.443145 TTGGTCCCCATTGTATTTCGT 57.557 42.857 0.00 0.00 31.53 3.85
2458 2644 6.270064 GTTTATTGGTCCCCATTGTATTTCG 58.730 40.000 0.00 0.00 31.53 3.46
2459 2645 6.407639 GGGTTTATTGGTCCCCATTGTATTTC 60.408 42.308 0.00 0.00 37.09 2.17
2460 2646 5.427157 GGGTTTATTGGTCCCCATTGTATTT 59.573 40.000 0.00 0.00 37.09 1.40
2461 2647 4.966168 GGGTTTATTGGTCCCCATTGTATT 59.034 41.667 0.00 0.00 37.09 1.89
2462 2648 4.552674 GGGTTTATTGGTCCCCATTGTAT 58.447 43.478 0.00 0.00 37.09 2.29
2463 2649 3.625211 CGGGTTTATTGGTCCCCATTGTA 60.625 47.826 0.00 0.00 38.09 2.41
2464 2650 2.827755 GGGTTTATTGGTCCCCATTGT 58.172 47.619 0.00 0.00 37.09 2.71
2465 2651 1.754226 CGGGTTTATTGGTCCCCATTG 59.246 52.381 0.00 0.00 38.09 2.82
2466 2652 1.342574 CCGGGTTTATTGGTCCCCATT 60.343 52.381 0.00 0.00 38.09 3.16
2467 2653 0.260523 CCGGGTTTATTGGTCCCCAT 59.739 55.000 0.00 0.00 38.09 4.00
2468 2654 0.845543 TCCGGGTTTATTGGTCCCCA 60.846 55.000 0.00 0.00 38.09 4.96
2469 2655 0.394762 GTCCGGGTTTATTGGTCCCC 60.395 60.000 0.00 0.00 38.09 4.81
2470 2656 0.745486 CGTCCGGGTTTATTGGTCCC 60.745 60.000 0.00 0.00 37.98 4.46
2471 2657 0.745486 CCGTCCGGGTTTATTGGTCC 60.745 60.000 0.00 0.00 0.00 4.46
2472 2658 0.249955 TCCGTCCGGGTTTATTGGTC 59.750 55.000 0.00 0.00 37.00 4.02
2473 2659 0.251073 CTCCGTCCGGGTTTATTGGT 59.749 55.000 0.00 0.00 37.00 3.67
2474 2660 0.463116 CCTCCGTCCGGGTTTATTGG 60.463 60.000 0.00 0.00 37.00 3.16
2475 2661 0.251073 ACCTCCGTCCGGGTTTATTG 59.749 55.000 0.00 0.00 37.00 1.90
2476 2662 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
2477 2663 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
2478 2664 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
2479 2665 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
2480 2666 0.394899 CTACTACCTCCGTCCGGGTT 60.395 60.000 0.00 0.00 37.07 4.11
2481 2667 1.225704 CTACTACCTCCGTCCGGGT 59.774 63.158 0.00 0.00 39.40 5.28
2482 2668 0.110104 ATCTACTACCTCCGTCCGGG 59.890 60.000 0.00 0.00 35.59 5.73
2483 2669 1.202734 TCATCTACTACCTCCGTCCGG 60.203 57.143 0.00 0.00 0.00 5.14
2484 2670 2.251409 TCATCTACTACCTCCGTCCG 57.749 55.000 0.00 0.00 0.00 4.79
2485 2671 4.996788 TTTTCATCTACTACCTCCGTCC 57.003 45.455 0.00 0.00 0.00 4.79
2486 2672 6.145338 TCATTTTCATCTACTACCTCCGTC 57.855 41.667 0.00 0.00 0.00 4.79
2487 2673 6.540438 TTCATTTTCATCTACTACCTCCGT 57.460 37.500 0.00 0.00 0.00 4.69
2488 2674 6.073548 GCATTCATTTTCATCTACTACCTCCG 60.074 42.308 0.00 0.00 0.00 4.63
2489 2675 6.767902 TGCATTCATTTTCATCTACTACCTCC 59.232 38.462 0.00 0.00 0.00 4.30
2490 2676 7.792374 TGCATTCATTTTCATCTACTACCTC 57.208 36.000 0.00 0.00 0.00 3.85
2491 2677 8.216423 AGATGCATTCATTTTCATCTACTACCT 58.784 33.333 0.00 0.00 42.52 3.08
2492 2678 8.388484 AGATGCATTCATTTTCATCTACTACC 57.612 34.615 0.00 0.00 42.52 3.18
2498 2684 9.932207 TTGTTTTAGATGCATTCATTTTCATCT 57.068 25.926 0.00 8.39 45.21 2.90
2509 2695 7.272515 CCGACGTATTTTTGTTTTAGATGCATT 59.727 33.333 0.00 0.00 0.00 3.56
2510 2696 6.745450 CCGACGTATTTTTGTTTTAGATGCAT 59.255 34.615 0.00 0.00 0.00 3.96
2513 2699 6.833839 TCCCGACGTATTTTTGTTTTAGATG 58.166 36.000 0.00 0.00 0.00 2.90
2534 2720 5.109903 CGTCCGGAGAAATGAATATATCCC 58.890 45.833 3.06 0.00 0.00 3.85
2553 2739 6.520272 TCTACTACTCTTATGTACTCCGTCC 58.480 44.000 0.00 0.00 0.00 4.79
2561 2747 9.710818 ACCCAAGAATTCTACTACTCTTATGTA 57.289 33.333 8.75 0.00 0.00 2.29
2562 2748 8.611051 ACCCAAGAATTCTACTACTCTTATGT 57.389 34.615 8.75 0.00 0.00 2.29
2563 2749 9.892130 AAACCCAAGAATTCTACTACTCTTATG 57.108 33.333 8.75 0.00 0.00 1.90
2620 2925 1.611977 GTGGTTAGTGGGTGCTTTTCC 59.388 52.381 0.00 0.00 0.00 3.13
2646 2957 0.459585 CGGCAGTTTCGCTAGCCTTA 60.460 55.000 9.66 0.00 44.85 2.69
2651 2962 1.324736 GACATTCGGCAGTTTCGCTAG 59.675 52.381 0.00 0.00 0.00 3.42
2687 2998 0.792640 CTTCTTGCCGCTGTACTGTG 59.207 55.000 6.34 6.34 0.00 3.66
2764 3081 0.391793 CGGAGAAGAGTTTCCCAGGC 60.392 60.000 0.00 0.00 33.64 4.85
2802 3119 0.040958 GTGCTGTGCTTGCTGTGTAC 60.041 55.000 0.00 0.00 0.00 2.90
2950 3273 1.283793 CGATGGGCGGCATCAATTC 59.716 57.895 12.47 0.00 36.03 2.17
3406 3752 3.614616 GTCCAGAAACACGCTATTGAGAG 59.385 47.826 0.00 0.00 0.00 3.20
3447 3793 5.177696 CCAGAGAGGAACTAACAAGAAAACG 59.822 44.000 0.00 0.00 41.55 3.60
3527 3873 1.880027 GTTGACCGAGACAATTGGCTT 59.120 47.619 16.74 0.00 35.56 4.35
3554 3900 4.993029 TCAATCTGAAATCATGCATGCA 57.007 36.364 25.04 25.04 0.00 3.96
3555 3901 6.292865 CCAAATCAATCTGAAATCATGCATGC 60.293 38.462 22.25 11.82 0.00 4.06
3556 3902 6.983890 TCCAAATCAATCTGAAATCATGCATG 59.016 34.615 21.07 21.07 0.00 4.06
3557 3903 7.119709 TCCAAATCAATCTGAAATCATGCAT 57.880 32.000 0.00 0.00 0.00 3.96
3572 3918 3.258872 CAGGTTGGCATCTTCCAAATCAA 59.741 43.478 0.00 0.00 46.63 2.57
3639 4012 0.460987 GCAGGGGTCGAATGAGTGAG 60.461 60.000 0.00 0.00 0.00 3.51
3652 4025 1.688772 CTTCCAGAATCATGCAGGGG 58.311 55.000 0.00 0.00 0.00 4.79
3692 4065 1.766069 CGACGATCCATTATCACGCA 58.234 50.000 0.00 0.00 33.87 5.24
3741 4114 7.751768 ACAGCTCCCAATAATAATTCTTAGC 57.248 36.000 0.00 0.00 0.00 3.09
3804 4177 9.013490 CAGCAAATGTACTACTTATGATTTTGC 57.987 33.333 8.12 8.12 43.97 3.68
3887 4260 1.006571 GACTTGACACGAAGCCGGA 60.007 57.895 5.05 0.00 40.78 5.14
3971 4344 0.233848 CGTAACGTGTGCAGGTTTCC 59.766 55.000 14.14 6.39 39.69 3.13
3984 4357 2.107178 GGTAGTTCAGATCGCGTAACG 58.893 52.381 5.77 0.00 45.62 3.18
4030 4406 3.193691 TCTTCCGATCTGACTTTCTCACC 59.806 47.826 0.00 0.00 0.00 4.02
4047 4423 6.037610 CAGAAAGTATACCTGCATGTTCTTCC 59.962 42.308 0.00 0.00 0.00 3.46
4245 4651 0.535780 TGCAAGCAACTGTGGAGAGG 60.536 55.000 0.00 0.00 0.00 3.69
4278 4684 3.954999 TCGCATGTTGATGTATTGCATG 58.045 40.909 0.00 0.00 38.06 4.06
4290 4696 1.153289 CCTCCCTCCTCGCATGTTG 60.153 63.158 0.00 0.00 0.00 3.33
4291 4697 1.306141 TCCTCCCTCCTCGCATGTT 60.306 57.895 0.00 0.00 0.00 2.71
4292 4698 1.760086 CTCCTCCCTCCTCGCATGT 60.760 63.158 0.00 0.00 0.00 3.21
4293 4699 3.136750 CTCCTCCCTCCTCGCATG 58.863 66.667 0.00 0.00 0.00 4.06
4305 4711 2.753043 TACGACCACGGGCTCCTC 60.753 66.667 0.00 0.00 44.46 3.71
4306 4712 2.754658 CTACGACCACGGGCTCCT 60.755 66.667 0.00 0.00 44.46 3.69
4307 4713 3.061260 GACTACGACCACGGGCTCC 62.061 68.421 0.00 0.00 44.46 4.70
4313 4719 1.469251 CCATTCTGGACTACGACCACG 60.469 57.143 0.00 0.00 40.96 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.