Multiple sequence alignment - TraesCS6B01G323600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G323600 chr6B 100.000 3491 0 0 1 3491 572492671 572496161 0.000000e+00 6447
1 TraesCS6B01G323600 chr6B 93.279 1592 74 13 845 2419 572501928 572503503 0.000000e+00 2316
2 TraesCS6B01G323600 chr6B 86.047 258 32 4 80 335 52388248 52388503 1.230000e-69 274
3 TraesCS6B01G323600 chr6B 82.432 222 16 6 628 848 572501224 572501423 4.630000e-39 172
4 TraesCS6B01G323600 chr6D 94.628 1638 61 13 804 2419 382723926 382725558 0.000000e+00 2512
5 TraesCS6B01G323600 chr6D 84.840 376 35 7 445 802 382703263 382703634 3.310000e-95 359
6 TraesCS6B01G323600 chr6D 80.208 384 43 13 84 444 12294595 12294222 1.240000e-64 257
7 TraesCS6B01G323600 chr6D 90.361 83 5 1 1 83 242265021 242264942 4.770000e-19 106
8 TraesCS6B01G323600 chr6A 90.203 1133 68 16 1312 2419 524832371 524833485 0.000000e+00 1437
9 TraesCS6B01G323600 chr6A 90.528 834 36 16 445 1243 524830978 524831803 0.000000e+00 1062
10 TraesCS6B01G323600 chr4A 93.103 957 64 2 2536 3491 744192133 744193088 0.000000e+00 1400
11 TraesCS6B01G323600 chr4A 90.000 260 22 1 80 335 651364195 651364454 2.010000e-87 333
12 TraesCS6B01G323600 chr4A 87.500 256 32 0 80 335 52603976 52604231 2.630000e-76 296
13 TraesCS6B01G323600 chr4A 77.945 399 55 18 80 445 599609513 599609911 5.870000e-53 219
14 TraesCS6B01G323600 chr4A 90.517 116 11 0 329 444 52604258 52604373 1.680000e-33 154
15 TraesCS6B01G323600 chr4A 88.983 118 13 0 327 444 595791275 595791392 2.810000e-31 147
16 TraesCS6B01G323600 chr4B 90.632 950 89 0 2542 3491 536695861 536696810 0.000000e+00 1262
17 TraesCS6B01G323600 chr4B 86.975 952 116 7 2541 3491 99081203 99080259 0.000000e+00 1064
18 TraesCS6B01G323600 chr2D 90.592 946 88 1 2547 3491 499149706 499148761 0.000000e+00 1253
19 TraesCS6B01G323600 chr3A 86.083 503 61 9 1034 1535 80433399 80432905 1.840000e-147 532
20 TraesCS6B01G323600 chr7D 83.658 514 57 14 1034 1529 63867075 63866571 3.180000e-125 459
21 TraesCS6B01G323600 chr7A 83.109 521 61 16 1034 1536 66743774 66743263 1.910000e-122 449
22 TraesCS6B01G323600 chr7A 82.752 516 68 12 1034 1534 66881788 66881279 1.150000e-119 440
23 TraesCS6B01G323600 chr7A 87.109 256 33 0 80 335 66931490 66931745 1.230000e-74 291
24 TraesCS6B01G323600 chr7A 91.379 116 10 0 329 444 66931772 66931887 3.610000e-35 159
25 TraesCS6B01G323600 chr7A 75.862 348 51 21 1585 1912 66881271 66880937 2.810000e-31 147
26 TraesCS6B01G323600 chr7A 93.939 66 4 0 1820 1885 66742769 66742704 2.220000e-17 100
27 TraesCS6B01G323600 chr7B 82.946 516 67 10 1034 1534 4514953 4514444 2.470000e-121 446
28 TraesCS6B01G323600 chr7B 90.541 74 7 0 1820 1893 4513939 4513866 7.970000e-17 99
29 TraesCS6B01G323600 chr3B 93.750 256 16 0 80 335 735108478 735108733 5.470000e-103 385
30 TraesCS6B01G323600 chr3B 90.909 253 23 0 83 335 796283662 796283410 1.200000e-89 340
31 TraesCS6B01G323600 chr3D 91.700 253 21 0 83 335 584598012 584597760 5.540000e-93 351
32 TraesCS6B01G323600 chr1D 83.938 386 32 16 91 447 468845065 468844681 3.340000e-90 342
33 TraesCS6B01G323600 chr1D 89.655 116 12 0 329 444 460881249 460881134 7.810000e-32 148
34 TraesCS6B01G323600 chr1B 83.598 378 46 6 83 444 635001402 635001025 1.200000e-89 340
35 TraesCS6B01G323600 chr5B 79.581 382 52 17 83 448 589545103 589544732 2.080000e-62 250
36 TraesCS6B01G323600 chrUn 89.655 116 12 0 329 444 184654173 184654288 7.810000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G323600 chr6B 572492671 572496161 3490 False 6447.0 6447 100.0000 1 3491 1 chr6B.!!$F2 3490
1 TraesCS6B01G323600 chr6B 572501224 572503503 2279 False 1244.0 2316 87.8555 628 2419 2 chr6B.!!$F3 1791
2 TraesCS6B01G323600 chr6D 382723926 382725558 1632 False 2512.0 2512 94.6280 804 2419 1 chr6D.!!$F2 1615
3 TraesCS6B01G323600 chr6A 524830978 524833485 2507 False 1249.5 1437 90.3655 445 2419 2 chr6A.!!$F1 1974
4 TraesCS6B01G323600 chr4A 744192133 744193088 955 False 1400.0 1400 93.1030 2536 3491 1 chr4A.!!$F4 955
5 TraesCS6B01G323600 chr4B 536695861 536696810 949 False 1262.0 1262 90.6320 2542 3491 1 chr4B.!!$F1 949
6 TraesCS6B01G323600 chr4B 99080259 99081203 944 True 1064.0 1064 86.9750 2541 3491 1 chr4B.!!$R1 950
7 TraesCS6B01G323600 chr2D 499148761 499149706 945 True 1253.0 1253 90.5920 2547 3491 1 chr2D.!!$R1 944
8 TraesCS6B01G323600 chr7D 63866571 63867075 504 True 459.0 459 83.6580 1034 1529 1 chr7D.!!$R1 495
9 TraesCS6B01G323600 chr7A 66880937 66881788 851 True 293.5 440 79.3070 1034 1912 2 chr7A.!!$R2 878
10 TraesCS6B01G323600 chr7A 66742704 66743774 1070 True 274.5 449 88.5240 1034 1885 2 chr7A.!!$R1 851
11 TraesCS6B01G323600 chr7B 4513866 4514953 1087 True 272.5 446 86.7435 1034 1893 2 chr7B.!!$R1 859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 226 0.024619 GATTTGACGACGTTAGCCGC 59.975 55.0 0.13 0.0 41.42 6.53 F
544 558 0.036671 GGGCGAATATAAGGGGTCCG 60.037 60.0 0.00 0.0 0.00 4.79 F
1935 3271 1.194121 GCCAAGAGGTTGCCCCATTT 61.194 55.0 0.00 0.0 37.19 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 2877 0.108424 GCTGTCACTCTTCATCGCCT 60.108 55.0 0.00 0.00 0.00 5.52 R
2301 3659 0.307760 AAAAATCCGGATGCGCGATC 59.692 50.0 19.95 10.22 0.00 3.69 R
2881 4240 0.311790 CTTGCAAGAAGGCGCTTGAA 59.688 50.0 22.31 12.20 46.31 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.677151 GGGGAGGGAGGTGGTGGT 62.677 72.222 0.00 0.00 0.00 4.16
29 30 2.453054 GGGAGGGAGGTGGTGGTA 59.547 66.667 0.00 0.00 0.00 3.25
30 31 1.689582 GGGAGGGAGGTGGTGGTAG 60.690 68.421 0.00 0.00 0.00 3.18
31 32 2.368011 GGAGGGAGGTGGTGGTAGC 61.368 68.421 0.00 0.00 0.00 3.58
32 33 1.612442 GAGGGAGGTGGTGGTAGCA 60.612 63.158 0.00 0.00 0.00 3.49
33 34 1.613630 AGGGAGGTGGTGGTAGCAG 60.614 63.158 0.00 0.00 0.00 4.24
34 35 2.269241 GGAGGTGGTGGTAGCAGC 59.731 66.667 16.91 16.91 43.66 5.25
57 58 4.834453 CTGCTGCCTGGGAGCGAG 62.834 72.222 30.89 24.41 39.47 5.03
85 86 4.096003 CGTTGAGGGGGCGTGGAT 62.096 66.667 0.00 0.00 0.00 3.41
86 87 2.124695 GTTGAGGGGGCGTGGATC 60.125 66.667 0.00 0.00 0.00 3.36
87 88 3.781307 TTGAGGGGGCGTGGATCG 61.781 66.667 0.00 0.00 43.12 3.69
96 97 2.880879 CGTGGATCGCTGACGTGG 60.881 66.667 0.00 0.00 41.18 4.94
97 98 3.188786 GTGGATCGCTGACGTGGC 61.189 66.667 0.00 0.00 41.18 5.01
103 104 2.506217 CGCTGACGTGGCGTGTAT 60.506 61.111 19.91 0.00 46.37 2.29
104 105 2.788176 CGCTGACGTGGCGTGTATG 61.788 63.158 19.91 0.00 46.37 2.39
105 106 3.081133 CTGACGTGGCGTGTATGC 58.919 61.111 0.00 0.00 41.37 3.14
162 163 3.770040 CGGATCGGTGAGGTGCCA 61.770 66.667 0.00 0.00 0.00 4.92
163 164 2.668632 GGATCGGTGAGGTGCCAA 59.331 61.111 0.00 0.00 0.00 4.52
164 165 1.450312 GGATCGGTGAGGTGCCAAG 60.450 63.158 0.00 0.00 0.00 3.61
165 166 2.045926 ATCGGTGAGGTGCCAAGC 60.046 61.111 0.00 0.00 0.00 4.01
166 167 3.958147 ATCGGTGAGGTGCCAAGCG 62.958 63.158 8.55 8.55 36.22 4.68
168 169 4.329545 GGTGAGGTGCCAAGCGGA 62.330 66.667 0.00 0.00 0.00 5.54
169 170 2.743928 GTGAGGTGCCAAGCGGAG 60.744 66.667 0.00 0.00 0.00 4.63
170 171 2.922503 TGAGGTGCCAAGCGGAGA 60.923 61.111 0.00 0.00 0.00 3.71
171 172 2.293318 TGAGGTGCCAAGCGGAGAT 61.293 57.895 0.00 0.00 0.00 2.75
172 173 0.975556 TGAGGTGCCAAGCGGAGATA 60.976 55.000 0.00 0.00 0.00 1.98
173 174 0.394565 GAGGTGCCAAGCGGAGATAT 59.605 55.000 0.00 0.00 0.00 1.63
174 175 0.107456 AGGTGCCAAGCGGAGATATG 59.893 55.000 0.00 0.00 0.00 1.78
175 176 1.510480 GGTGCCAAGCGGAGATATGC 61.510 60.000 0.00 0.00 0.00 3.14
176 177 1.227943 TGCCAAGCGGAGATATGCC 60.228 57.895 0.00 0.00 0.00 4.40
183 184 4.968197 GGAGATATGCCGACGGTC 57.032 61.111 16.73 8.54 0.00 4.79
184 185 1.081376 GGAGATATGCCGACGGTCG 60.081 63.158 22.88 22.88 40.07 4.79
185 186 1.729838 GAGATATGCCGACGGTCGC 60.730 63.158 24.26 18.95 38.82 5.19
186 187 2.733593 GATATGCCGACGGTCGCC 60.734 66.667 24.26 15.00 38.82 5.54
187 188 4.295119 ATATGCCGACGGTCGCCC 62.295 66.667 24.26 16.83 38.82 6.13
204 205 4.129737 CGTCCTCACCGTCGGCAT 62.130 66.667 12.28 0.00 0.00 4.40
205 206 2.767445 CGTCCTCACCGTCGGCATA 61.767 63.158 12.28 0.00 0.00 3.14
206 207 1.065928 GTCCTCACCGTCGGCATAG 59.934 63.158 12.28 6.16 0.00 2.23
207 208 1.077285 TCCTCACCGTCGGCATAGA 60.077 57.895 12.28 3.67 0.00 1.98
208 209 0.467474 TCCTCACCGTCGGCATAGAT 60.467 55.000 12.28 0.00 0.00 1.98
209 210 0.389391 CCTCACCGTCGGCATAGATT 59.611 55.000 12.28 0.00 0.00 2.40
210 211 1.202533 CCTCACCGTCGGCATAGATTT 60.203 52.381 12.28 0.00 0.00 2.17
211 212 1.860950 CTCACCGTCGGCATAGATTTG 59.139 52.381 12.28 0.00 0.00 2.32
212 213 1.478916 TCACCGTCGGCATAGATTTGA 59.521 47.619 12.28 1.66 0.00 2.69
213 214 1.593006 CACCGTCGGCATAGATTTGAC 59.407 52.381 12.28 0.00 0.00 3.18
221 222 4.694012 GGCATAGATTTGACGACGTTAG 57.306 45.455 0.13 0.00 0.00 2.34
222 223 3.060473 GGCATAGATTTGACGACGTTAGC 60.060 47.826 0.13 0.00 0.00 3.09
223 224 3.060473 GCATAGATTTGACGACGTTAGCC 60.060 47.826 0.13 0.00 0.00 3.93
224 225 1.625616 AGATTTGACGACGTTAGCCG 58.374 50.000 0.13 0.00 44.03 5.52
225 226 0.024619 GATTTGACGACGTTAGCCGC 59.975 55.000 0.13 0.00 41.42 6.53
226 227 0.389426 ATTTGACGACGTTAGCCGCT 60.389 50.000 0.13 0.00 41.42 5.52
227 228 1.279527 TTTGACGACGTTAGCCGCTG 61.280 55.000 0.13 0.00 41.42 5.18
228 229 2.879462 GACGACGTTAGCCGCTGG 60.879 66.667 0.13 0.00 41.42 4.85
229 230 3.621892 GACGACGTTAGCCGCTGGT 62.622 63.158 0.13 0.00 41.42 4.00
230 231 2.879462 CGACGTTAGCCGCTGGTC 60.879 66.667 2.16 7.03 41.42 4.02
231 232 2.260434 GACGTTAGCCGCTGGTCA 59.740 61.111 2.16 0.00 41.42 4.02
232 233 2.048503 ACGTTAGCCGCTGGTCAC 60.049 61.111 2.16 0.00 41.42 3.67
233 234 3.179265 CGTTAGCCGCTGGTCACG 61.179 66.667 2.16 0.00 0.00 4.35
242 243 4.065281 CTGGTCACGGACGGGGTC 62.065 72.222 0.00 0.00 32.65 4.46
262 263 2.512974 CGGGTCCACGGTTATGCC 60.513 66.667 0.00 0.00 0.00 4.40
277 278 3.098555 GCCGACGGCTGGTTTATG 58.901 61.111 31.30 0.00 46.69 1.90
278 279 3.098555 CCGACGGCTGGTTTATGC 58.901 61.111 0.00 0.00 0.00 3.14
279 280 2.469516 CCGACGGCTGGTTTATGCC 61.470 63.158 0.00 0.00 45.25 4.40
283 284 3.098555 GGCTGGTTTATGCCGACG 58.901 61.111 0.00 0.00 39.71 5.12
284 285 2.469516 GGCTGGTTTATGCCGACGG 61.470 63.158 10.29 10.29 39.71 4.79
304 305 2.355837 GCTGTCGGCGTGTTCTCA 60.356 61.111 6.85 0.00 0.00 3.27
305 306 2.375766 GCTGTCGGCGTGTTCTCAG 61.376 63.158 6.85 8.39 0.00 3.35
306 307 1.285950 CTGTCGGCGTGTTCTCAGA 59.714 57.895 6.85 0.00 0.00 3.27
307 308 0.109086 CTGTCGGCGTGTTCTCAGAT 60.109 55.000 6.85 0.00 0.00 2.90
308 309 1.132453 CTGTCGGCGTGTTCTCAGATA 59.868 52.381 6.85 0.00 0.00 1.98
309 310 1.132453 TGTCGGCGTGTTCTCAGATAG 59.868 52.381 6.85 0.00 0.00 2.08
310 311 0.738975 TCGGCGTGTTCTCAGATAGG 59.261 55.000 6.85 0.00 0.00 2.57
311 312 0.872021 CGGCGTGTTCTCAGATAGGC 60.872 60.000 0.00 0.00 0.00 3.93
312 313 0.530870 GGCGTGTTCTCAGATAGGCC 60.531 60.000 0.00 0.00 0.00 5.19
313 314 0.872021 GCGTGTTCTCAGATAGGCCG 60.872 60.000 0.00 0.00 0.00 6.13
314 315 0.738975 CGTGTTCTCAGATAGGCCGA 59.261 55.000 0.00 0.00 0.00 5.54
315 316 1.534175 CGTGTTCTCAGATAGGCCGAC 60.534 57.143 0.00 0.00 0.00 4.79
316 317 0.738975 TGTTCTCAGATAGGCCGACG 59.261 55.000 0.00 0.00 0.00 5.12
317 318 1.022735 GTTCTCAGATAGGCCGACGA 58.977 55.000 0.00 0.00 0.00 4.20
318 319 1.022735 TTCTCAGATAGGCCGACGAC 58.977 55.000 0.00 0.00 0.00 4.34
319 320 0.818445 TCTCAGATAGGCCGACGACC 60.818 60.000 0.00 0.00 0.00 4.79
320 321 1.077285 TCAGATAGGCCGACGACCA 60.077 57.895 2.14 0.00 0.00 4.02
321 322 0.467474 TCAGATAGGCCGACGACCAT 60.467 55.000 2.14 0.00 0.00 3.55
322 323 0.389391 CAGATAGGCCGACGACCATT 59.611 55.000 2.14 0.00 0.00 3.16
323 324 1.120530 AGATAGGCCGACGACCATTT 58.879 50.000 2.14 0.00 0.00 2.32
324 325 1.485066 AGATAGGCCGACGACCATTTT 59.515 47.619 2.14 0.00 0.00 1.82
325 326 1.597663 GATAGGCCGACGACCATTTTG 59.402 52.381 2.14 0.00 0.00 2.44
326 327 0.322322 TAGGCCGACGACCATTTTGT 59.678 50.000 2.14 0.00 0.00 2.83
327 328 1.209127 GGCCGACGACCATTTTGTG 59.791 57.895 0.00 0.00 0.00 3.33
328 329 1.442017 GCCGACGACCATTTTGTGC 60.442 57.895 0.00 0.00 0.00 4.57
329 330 1.209127 CCGACGACCATTTTGTGCC 59.791 57.895 0.00 0.00 0.00 5.01
330 331 1.154488 CGACGACCATTTTGTGCCG 60.154 57.895 0.00 0.00 0.00 5.69
331 332 1.561717 CGACGACCATTTTGTGCCGA 61.562 55.000 0.00 0.00 0.00 5.54
332 333 0.110373 GACGACCATTTTGTGCCGAC 60.110 55.000 0.00 0.00 0.00 4.79
333 334 1.154488 CGACCATTTTGTGCCGACG 60.154 57.895 0.00 0.00 0.00 5.12
334 335 1.209127 GACCATTTTGTGCCGACGG 59.791 57.895 10.29 10.29 0.00 4.79
344 345 2.809706 GCCGACGGCCAGTATACA 59.190 61.111 28.74 0.00 44.06 2.29
345 346 1.590792 GCCGACGGCCAGTATACAC 60.591 63.158 28.74 0.00 44.06 2.90
346 347 1.066918 CCGACGGCCAGTATACACC 59.933 63.158 2.24 2.72 0.00 4.16
350 351 4.724022 GGCCAGTATACACCGACG 57.276 61.111 5.50 0.00 0.00 5.12
351 352 2.109431 GGCCAGTATACACCGACGA 58.891 57.895 5.50 0.00 0.00 4.20
352 353 0.248784 GGCCAGTATACACCGACGAC 60.249 60.000 5.50 0.00 0.00 4.34
353 354 0.248784 GCCAGTATACACCGACGACC 60.249 60.000 5.50 0.00 0.00 4.79
354 355 1.097232 CCAGTATACACCGACGACCA 58.903 55.000 5.50 0.00 0.00 4.02
355 356 1.065102 CCAGTATACACCGACGACCAG 59.935 57.143 5.50 0.00 0.00 4.00
356 357 1.065102 CAGTATACACCGACGACCAGG 59.935 57.143 5.50 0.00 0.00 4.45
357 358 1.065199 AGTATACACCGACGACCAGGA 60.065 52.381 5.50 0.00 0.00 3.86
358 359 1.064654 GTATACACCGACGACCAGGAC 59.935 57.143 0.00 0.00 0.00 3.85
359 360 1.651240 ATACACCGACGACCAGGACG 61.651 60.000 9.97 9.97 0.00 4.79
360 361 3.667282 CACCGACGACCAGGACGT 61.667 66.667 17.22 17.22 46.58 4.34
361 362 3.667282 ACCGACGACCAGGACGTG 61.667 66.667 22.02 10.68 43.97 4.49
369 370 4.742201 CCAGGACGTGGCTGTCGG 62.742 72.222 0.32 0.00 40.39 4.79
377 378 2.501128 TGGCTGTCGGCATAGCTC 59.499 61.111 5.89 0.00 44.01 4.09
378 379 2.358372 TGGCTGTCGGCATAGCTCA 61.358 57.895 5.89 0.00 44.01 4.26
379 380 1.153369 GGCTGTCGGCATAGCTCAA 60.153 57.895 5.89 0.00 44.01 3.02
380 381 0.744414 GGCTGTCGGCATAGCTCAAA 60.744 55.000 5.89 0.00 44.01 2.69
381 382 0.654683 GCTGTCGGCATAGCTCAAAG 59.345 55.000 0.00 0.00 41.35 2.77
382 383 2.009042 GCTGTCGGCATAGCTCAAAGT 61.009 52.381 0.00 0.00 41.35 2.66
383 384 2.738643 GCTGTCGGCATAGCTCAAAGTA 60.739 50.000 0.00 0.00 41.35 2.24
384 385 3.722147 CTGTCGGCATAGCTCAAAGTAT 58.278 45.455 0.00 0.00 0.00 2.12
385 386 3.457234 TGTCGGCATAGCTCAAAGTATG 58.543 45.455 0.00 0.00 0.00 2.39
390 391 3.957468 GCATAGCTCAAAGTATGCCAAC 58.043 45.455 5.71 0.00 43.86 3.77
391 392 3.546815 GCATAGCTCAAAGTATGCCAACG 60.547 47.826 5.71 0.00 43.86 4.10
392 393 1.453155 AGCTCAAAGTATGCCAACGG 58.547 50.000 0.00 0.00 0.00 4.44
413 414 4.550395 CCGTCGGCATTGTTTTGG 57.450 55.556 0.00 0.00 0.00 3.28
414 415 1.732683 CCGTCGGCATTGTTTTGGC 60.733 57.895 0.00 0.00 38.71 4.52
415 416 1.732683 CGTCGGCATTGTTTTGGCC 60.733 57.895 0.00 0.00 44.27 5.36
418 419 4.260194 GGCATTGTTTTGGCCGTC 57.740 55.556 0.00 0.00 38.04 4.79
419 420 1.732683 GGCATTGTTTTGGCCGTCG 60.733 57.895 0.00 0.00 38.04 5.12
420 421 1.732683 GCATTGTTTTGGCCGTCGG 60.733 57.895 6.99 6.99 0.00 4.79
421 422 1.080839 CATTGTTTTGGCCGTCGGG 60.081 57.895 14.38 0.00 0.00 5.14
422 423 2.272447 ATTGTTTTGGCCGTCGGGG 61.272 57.895 14.38 0.00 39.58 5.73
423 424 2.987355 ATTGTTTTGGCCGTCGGGGT 62.987 55.000 14.38 0.00 38.44 4.95
424 425 2.032376 GTTTTGGCCGTCGGGGTA 59.968 61.111 14.38 0.00 38.44 3.69
425 426 2.036571 GTTTTGGCCGTCGGGGTAG 61.037 63.158 14.38 0.00 38.44 3.18
426 427 3.256824 TTTTGGCCGTCGGGGTAGG 62.257 63.158 14.38 0.00 38.44 3.18
427 428 4.700448 TTGGCCGTCGGGGTAGGA 62.700 66.667 14.38 0.00 38.44 2.94
430 431 3.073101 GCCGTCGGGGTAGGACTT 61.073 66.667 14.38 0.00 38.44 3.01
431 432 2.653087 GCCGTCGGGGTAGGACTTT 61.653 63.158 14.38 0.00 38.44 2.66
432 433 1.977685 CCGTCGGGGTAGGACTTTT 59.022 57.895 2.34 0.00 32.24 2.27
433 434 0.322648 CCGTCGGGGTAGGACTTTTT 59.677 55.000 2.34 0.00 32.24 1.94
449 450 2.500392 TTTTTCCGGTAGTGATGGGG 57.500 50.000 0.00 0.00 0.00 4.96
456 457 0.988832 GGTAGTGATGGGGGTTGTCA 59.011 55.000 0.00 0.00 0.00 3.58
467 468 1.469335 GGGTTGTCAGTCAGTCCGGA 61.469 60.000 0.00 0.00 0.00 5.14
477 478 3.239253 AGTCCGGACGCTTGGGTT 61.239 61.111 28.26 5.88 36.20 4.11
492 493 3.537795 TGGGTTAGATATAGGGCGTCT 57.462 47.619 0.00 0.00 0.00 4.18
502 503 2.107950 TAGGGCGTCTTGTTGGATTG 57.892 50.000 0.00 0.00 0.00 2.67
530 544 2.604079 TCCGGGTGTTTAGGGCGA 60.604 61.111 0.00 0.00 0.00 5.54
544 558 0.036671 GGGCGAATATAAGGGGTCCG 60.037 60.000 0.00 0.00 0.00 4.79
548 562 2.299867 GCGAATATAAGGGGTCCGGTTA 59.700 50.000 0.00 0.00 0.00 2.85
557 571 4.044946 AGGGGTCCGGTTATAGATACTC 57.955 50.000 0.00 0.00 0.00 2.59
558 572 3.661654 AGGGGTCCGGTTATAGATACTCT 59.338 47.826 0.00 0.00 0.00 3.24
564 578 6.350027 GGTCCGGTTATAGATACTCTTAAGCC 60.350 46.154 0.00 0.00 0.00 4.35
565 579 6.208204 GTCCGGTTATAGATACTCTTAAGCCA 59.792 42.308 0.00 0.00 0.00 4.75
588 602 6.291849 CCATTCAGATTTAACAGATCGTCGAC 60.292 42.308 5.18 5.18 0.00 4.20
626 640 5.277345 GCGCTTGTCTCTTTTGTTCTTCTTA 60.277 40.000 0.00 0.00 0.00 2.10
694 709 3.321968 AGGCTTTTCCTGTTGTCCAATTC 59.678 43.478 0.00 0.00 45.54 2.17
695 710 3.069443 GGCTTTTCCTGTTGTCCAATTCA 59.931 43.478 0.00 0.00 0.00 2.57
699 714 6.928492 GCTTTTCCTGTTGTCCAATTCAATTA 59.072 34.615 0.00 0.00 0.00 1.40
701 716 9.492973 CTTTTCCTGTTGTCCAATTCAATTATT 57.507 29.630 0.00 0.00 0.00 1.40
702 717 9.844257 TTTTCCTGTTGTCCAATTCAATTATTT 57.156 25.926 0.00 0.00 0.00 1.40
703 718 9.844257 TTTCCTGTTGTCCAATTCAATTATTTT 57.156 25.926 0.00 0.00 0.00 1.82
749 764 9.831737 GATCATTTGATTTATATTTAGCGCTGT 57.168 29.630 22.90 8.68 34.37 4.40
927 1476 1.210967 CTCCGAGTAGGTCAGGAGTCT 59.789 57.143 2.42 0.00 39.35 3.24
1672 2738 1.292223 GGTGACTCGCAAGCTGGTA 59.708 57.895 0.00 0.00 37.18 3.25
1796 2877 2.046009 TACACCAACCAGCTTGCCGA 62.046 55.000 0.00 0.00 0.00 5.54
1934 3270 1.610379 GCCAAGAGGTTGCCCCATT 60.610 57.895 0.00 0.00 37.19 3.16
1935 3271 1.194121 GCCAAGAGGTTGCCCCATTT 61.194 55.000 0.00 0.00 37.19 2.32
1937 3273 1.550869 CCAAGAGGTTGCCCCATTTCT 60.551 52.381 0.00 0.00 34.66 2.52
1963 3302 2.611800 TGGGCCAGATCCACAGCT 60.612 61.111 0.00 0.00 0.00 4.24
2000 3339 1.815421 GAGATGCCGCCGTGATGTT 60.815 57.895 0.00 0.00 0.00 2.71
2060 3399 2.736995 CAACGATGACGGCGGTGT 60.737 61.111 13.24 0.00 41.26 4.16
2081 3420 3.488090 GAAAACCGAGAGCGCCCG 61.488 66.667 2.29 5.51 35.83 6.13
2224 3577 6.268825 AGAGTGAACTAGTCGAAGCAATAA 57.731 37.500 0.00 0.00 33.78 1.40
2285 3640 1.985473 ACCATGTCATGTGCTTGTGT 58.015 45.000 11.84 0.00 0.00 3.72
2286 3641 1.610038 ACCATGTCATGTGCTTGTGTG 59.390 47.619 11.84 0.00 0.00 3.82
2301 3659 1.480545 TGTGTGGATGGATGGTCTACG 59.519 52.381 0.00 0.00 30.58 3.51
2304 3662 2.628178 TGTGGATGGATGGTCTACGATC 59.372 50.000 0.00 0.00 30.58 3.69
2305 3663 1.886542 TGGATGGATGGTCTACGATCG 59.113 52.381 14.88 14.88 32.72 3.69
2310 3668 0.387367 GATGGTCTACGATCGCGCAT 60.387 55.000 16.60 6.44 42.48 4.73
2360 3718 6.456447 TTGTTACTACATACTCAACGTTGC 57.544 37.500 23.47 5.17 33.44 4.17
2361 3719 5.775686 TGTTACTACATACTCAACGTTGCT 58.224 37.500 23.47 12.82 0.00 3.91
2362 3720 5.631929 TGTTACTACATACTCAACGTTGCTG 59.368 40.000 23.47 19.10 0.00 4.41
2363 3721 2.993899 ACTACATACTCAACGTTGCTGC 59.006 45.455 23.47 0.00 0.00 5.25
2365 3723 1.270839 ACATACTCAACGTTGCTGCCT 60.271 47.619 23.47 4.07 0.00 4.75
2376 3734 1.000938 GTTGCTGCCTCTGGTTGAAAG 60.001 52.381 0.00 0.00 0.00 2.62
2379 3737 1.268079 GCTGCCTCTGGTTGAAAGTTC 59.732 52.381 0.00 0.00 0.00 3.01
2418 3776 9.825972 ATTACAGACTTCAAATGTTTTATCGTG 57.174 29.630 0.00 0.00 0.00 4.35
2419 3777 6.142817 ACAGACTTCAAATGTTTTATCGTGC 58.857 36.000 0.00 0.00 0.00 5.34
2420 3778 6.017109 ACAGACTTCAAATGTTTTATCGTGCT 60.017 34.615 0.00 0.00 0.00 4.40
2421 3779 7.172532 ACAGACTTCAAATGTTTTATCGTGCTA 59.827 33.333 0.00 0.00 0.00 3.49
2422 3780 8.015087 CAGACTTCAAATGTTTTATCGTGCTAA 58.985 33.333 0.00 0.00 0.00 3.09
2423 3781 8.730680 AGACTTCAAATGTTTTATCGTGCTAAT 58.269 29.630 0.00 0.00 0.00 1.73
2424 3782 9.341899 GACTTCAAATGTTTTATCGTGCTAATT 57.658 29.630 0.00 0.00 0.00 1.40
2425 3783 9.691362 ACTTCAAATGTTTTATCGTGCTAATTT 57.309 25.926 0.00 0.00 0.00 1.82
2428 3786 9.906660 TCAAATGTTTTATCGTGCTAATTTTCT 57.093 25.926 0.00 0.00 0.00 2.52
2431 3789 8.911247 ATGTTTTATCGTGCTAATTTTCTTCC 57.089 30.769 0.00 0.00 0.00 3.46
2432 3790 8.106247 TGTTTTATCGTGCTAATTTTCTTCCT 57.894 30.769 0.00 0.00 0.00 3.36
2433 3791 8.020819 TGTTTTATCGTGCTAATTTTCTTCCTG 58.979 33.333 0.00 0.00 0.00 3.86
2434 3792 7.915293 TTTATCGTGCTAATTTTCTTCCTGA 57.085 32.000 0.00 0.00 0.00 3.86
2435 3793 7.915293 TTATCGTGCTAATTTTCTTCCTGAA 57.085 32.000 0.00 0.00 0.00 3.02
2436 3794 8.506168 TTATCGTGCTAATTTTCTTCCTGAAT 57.494 30.769 0.00 0.00 34.24 2.57
2437 3795 6.182039 TCGTGCTAATTTTCTTCCTGAATG 57.818 37.500 0.00 0.00 34.24 2.67
2438 3796 5.705441 TCGTGCTAATTTTCTTCCTGAATGT 59.295 36.000 0.00 0.00 34.24 2.71
2439 3797 6.876789 TCGTGCTAATTTTCTTCCTGAATGTA 59.123 34.615 0.00 0.00 34.24 2.29
2440 3798 7.552687 TCGTGCTAATTTTCTTCCTGAATGTAT 59.447 33.333 0.00 0.00 34.24 2.29
2441 3799 8.826710 CGTGCTAATTTTCTTCCTGAATGTATA 58.173 33.333 0.00 0.00 34.24 1.47
2446 3804 8.773033 AATTTTCTTCCTGAATGTATATGGCT 57.227 30.769 0.00 0.00 34.24 4.75
2447 3805 7.807977 TTTTCTTCCTGAATGTATATGGCTC 57.192 36.000 0.00 0.00 34.24 4.70
2448 3806 5.139435 TCTTCCTGAATGTATATGGCTCG 57.861 43.478 0.00 0.00 0.00 5.03
2449 3807 4.832823 TCTTCCTGAATGTATATGGCTCGA 59.167 41.667 0.00 0.00 0.00 4.04
2450 3808 4.521130 TCCTGAATGTATATGGCTCGAC 57.479 45.455 0.00 0.00 0.00 4.20
2451 3809 4.152647 TCCTGAATGTATATGGCTCGACT 58.847 43.478 0.00 0.00 0.00 4.18
2452 3810 5.321927 TCCTGAATGTATATGGCTCGACTA 58.678 41.667 0.00 0.00 0.00 2.59
2453 3811 5.773176 TCCTGAATGTATATGGCTCGACTAA 59.227 40.000 0.00 0.00 0.00 2.24
2454 3812 6.437477 TCCTGAATGTATATGGCTCGACTAAT 59.563 38.462 0.00 0.00 0.00 1.73
2455 3813 6.754209 CCTGAATGTATATGGCTCGACTAATC 59.246 42.308 0.00 0.00 0.00 1.75
2469 3827 5.316488 CGACTAATCGTGCATAGGAAAAG 57.684 43.478 0.00 0.00 43.66 2.27
2470 3828 4.318121 CGACTAATCGTGCATAGGAAAAGC 60.318 45.833 0.00 0.00 43.66 3.51
2471 3829 4.513442 ACTAATCGTGCATAGGAAAAGCA 58.487 39.130 0.00 0.00 35.63 3.91
2472 3830 4.941263 ACTAATCGTGCATAGGAAAAGCAA 59.059 37.500 0.00 0.00 40.35 3.91
2473 3831 4.989279 AATCGTGCATAGGAAAAGCAAT 57.011 36.364 0.00 0.00 40.35 3.56
2474 3832 6.765989 ACTAATCGTGCATAGGAAAAGCAATA 59.234 34.615 0.00 0.00 40.35 1.90
2475 3833 4.875544 TCGTGCATAGGAAAAGCAATAC 57.124 40.909 0.00 0.00 40.35 1.89
2476 3834 4.257731 TCGTGCATAGGAAAAGCAATACA 58.742 39.130 0.00 0.00 40.35 2.29
2477 3835 4.332543 TCGTGCATAGGAAAAGCAATACAG 59.667 41.667 0.00 0.00 40.35 2.74
2478 3836 4.094887 CGTGCATAGGAAAAGCAATACAGT 59.905 41.667 0.00 0.00 40.35 3.55
2479 3837 5.335127 GTGCATAGGAAAAGCAATACAGTG 58.665 41.667 0.00 0.00 40.35 3.66
2480 3838 4.142403 TGCATAGGAAAAGCAATACAGTGC 60.142 41.667 0.00 0.00 45.28 4.40
2489 3847 3.901667 GCAATACAGTGCGTGTACTAC 57.098 47.619 1.06 0.00 44.65 2.73
2490 3848 3.247442 GCAATACAGTGCGTGTACTACA 58.753 45.455 1.06 0.00 44.65 2.74
2491 3849 3.303495 GCAATACAGTGCGTGTACTACAG 59.697 47.826 1.06 0.00 44.65 2.74
2492 3850 3.777465 ATACAGTGCGTGTACTACAGG 57.223 47.619 4.77 4.77 44.65 4.00
2493 3851 0.601558 ACAGTGCGTGTACTACAGGG 59.398 55.000 10.21 0.00 37.75 4.45
2494 3852 0.885879 CAGTGCGTGTACTACAGGGA 59.114 55.000 10.21 5.22 34.79 4.20
2495 3853 1.271379 CAGTGCGTGTACTACAGGGAA 59.729 52.381 10.21 0.00 36.17 3.97
2496 3854 1.271656 AGTGCGTGTACTACAGGGAAC 59.728 52.381 10.21 1.72 36.17 3.62
2497 3855 1.000060 GTGCGTGTACTACAGGGAACA 60.000 52.381 10.21 0.00 36.17 3.18
2498 3856 1.271379 TGCGTGTACTACAGGGAACAG 59.729 52.381 10.21 0.00 34.79 3.16
2499 3857 1.271656 GCGTGTACTACAGGGAACAGT 59.728 52.381 10.21 0.00 34.79 3.55
2500 3858 2.925306 GCGTGTACTACAGGGAACAGTG 60.925 54.545 10.21 0.00 34.79 3.66
2501 3859 2.352421 CGTGTACTACAGGGAACAGTGG 60.352 54.545 0.00 0.00 34.41 4.00
2502 3860 1.621814 TGTACTACAGGGAACAGTGGC 59.378 52.381 0.00 0.00 31.23 5.01
2503 3861 0.892755 TACTACAGGGAACAGTGGCG 59.107 55.000 0.00 0.00 31.23 5.69
2504 3862 1.741770 CTACAGGGAACAGTGGCGC 60.742 63.158 0.00 0.00 0.00 6.53
2505 3863 3.583276 TACAGGGAACAGTGGCGCG 62.583 63.158 0.00 0.00 0.00 6.86
2510 3868 4.012895 GAACAGTGGCGCGGTGTG 62.013 66.667 8.83 0.00 0.00 3.82
2518 3876 3.284449 GCGCGGTGTGGACCTTTT 61.284 61.111 8.83 0.00 40.58 2.27
2519 3877 2.943653 CGCGGTGTGGACCTTTTC 59.056 61.111 0.00 0.00 40.58 2.29
2520 3878 2.613506 CGCGGTGTGGACCTTTTCC 61.614 63.158 0.00 0.00 46.13 3.13
2528 3886 3.618171 GGACCTTTTCCGTAGTGCA 57.382 52.632 0.00 0.00 33.46 4.57
2529 3887 1.439679 GGACCTTTTCCGTAGTGCAG 58.560 55.000 0.00 0.00 33.46 4.41
2530 3888 1.270678 GGACCTTTTCCGTAGTGCAGT 60.271 52.381 0.00 0.00 33.46 4.40
2531 3889 2.028748 GGACCTTTTCCGTAGTGCAGTA 60.029 50.000 0.00 0.00 33.46 2.74
2532 3890 3.251571 GACCTTTTCCGTAGTGCAGTAG 58.748 50.000 0.18 0.00 0.00 2.57
2533 3891 2.000447 CCTTTTCCGTAGTGCAGTAGC 59.000 52.381 0.18 0.00 42.57 3.58
2617 3976 5.047847 GGAATATCATCCGAGACAAAACGA 58.952 41.667 0.00 0.00 0.00 3.85
2631 3990 7.516155 CGAGACAAAACGAAAAATACAGTCTGA 60.516 37.037 6.91 0.00 34.31 3.27
2651 4010 3.713248 TGATGGTGAAGAGAGCCATACAT 59.287 43.478 0.00 0.00 42.48 2.29
2673 4032 6.157645 ACATCAGTAAGTTCATCTCCCATTCT 59.842 38.462 0.00 0.00 0.00 2.40
2687 4046 5.667626 TCTCCCATTCTCACCTTAGCTAATT 59.332 40.000 6.64 0.00 0.00 1.40
2769 4128 5.300286 CCTTCAACCTTGACTTGACATCTTT 59.700 40.000 0.00 0.00 36.83 2.52
2791 4150 0.827368 CAAGAGGACCTAGGGCAGAC 59.173 60.000 18.82 6.90 0.00 3.51
2838 4197 1.409427 GGATACTACGCCTGCTGAGTT 59.591 52.381 0.00 0.00 0.00 3.01
2881 4240 0.532862 CTCCAACACTTGTCGCCAGT 60.533 55.000 0.00 0.00 0.00 4.00
2886 4245 1.299541 ACACTTGTCGCCAGTTCAAG 58.700 50.000 0.00 0.00 42.60 3.02
2997 4356 0.950836 TCACGCAAAATGACACCAGG 59.049 50.000 0.00 0.00 0.00 4.45
3026 4385 5.364778 CCTTACCCATATGTTTCGACATCA 58.635 41.667 1.24 0.00 0.00 3.07
3048 4407 1.444836 CCGTCCGTATTGGCTTTGAA 58.555 50.000 0.00 0.00 37.80 2.69
3086 4445 1.650242 TTCCCACACAGCCCTTTCCA 61.650 55.000 0.00 0.00 0.00 3.53
3208 4567 0.595053 CATCTCGCGCCTCATTACGT 60.595 55.000 0.00 0.00 0.00 3.57
3292 4651 1.152777 CCACTCCAACAGCCAACCA 60.153 57.895 0.00 0.00 0.00 3.67
3407 4766 4.926162 ACCCCCAAAACCGGTGGC 62.926 66.667 8.52 0.00 34.56 5.01
3421 4780 1.595929 GTGGCGACCCGTTTCTTCA 60.596 57.895 0.00 0.00 0.00 3.02
3430 4789 1.508632 CCGTTTCTTCACGACCACAT 58.491 50.000 0.00 0.00 43.15 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.262778 TACCACCACCTCCCTCCCC 62.263 68.421 0.00 0.00 0.00 4.81
12 13 1.689582 CTACCACCACCTCCCTCCC 60.690 68.421 0.00 0.00 0.00 4.30
13 14 2.368011 GCTACCACCACCTCCCTCC 61.368 68.421 0.00 0.00 0.00 4.30
14 15 1.612442 TGCTACCACCACCTCCCTC 60.612 63.158 0.00 0.00 0.00 4.30
15 16 1.613630 CTGCTACCACCACCTCCCT 60.614 63.158 0.00 0.00 0.00 4.20
16 17 2.990479 CTGCTACCACCACCTCCC 59.010 66.667 0.00 0.00 0.00 4.30
17 18 2.269241 GCTGCTACCACCACCTCC 59.731 66.667 0.00 0.00 0.00 4.30
18 19 2.125512 CGCTGCTACCACCACCTC 60.126 66.667 0.00 0.00 0.00 3.85
19 20 3.706373 CCGCTGCTACCACCACCT 61.706 66.667 0.00 0.00 0.00 4.00
40 41 4.834453 CTCGCTCCCAGGCAGCAG 62.834 72.222 2.42 0.00 36.61 4.24
68 69 4.096003 ATCCACGCCCCCTCAACG 62.096 66.667 0.00 0.00 0.00 4.10
69 70 2.124695 GATCCACGCCCCCTCAAC 60.125 66.667 0.00 0.00 0.00 3.18
70 71 3.781307 CGATCCACGCCCCCTCAA 61.781 66.667 0.00 0.00 34.51 3.02
79 80 2.880879 CCACGTCAGCGATCCACG 60.881 66.667 0.32 0.32 45.66 4.94
80 81 3.188786 GCCACGTCAGCGATCCAC 61.189 66.667 0.00 0.00 42.00 4.02
87 88 3.081133 CATACACGCCACGTCAGC 58.919 61.111 0.00 0.00 38.32 4.26
88 89 3.081133 GCATACACGCCACGTCAG 58.919 61.111 0.00 0.00 38.32 3.51
145 146 3.309436 TTGGCACCTCACCGATCCG 62.309 63.158 0.00 0.00 0.00 4.18
146 147 1.450312 CTTGGCACCTCACCGATCC 60.450 63.158 0.00 0.00 0.00 3.36
147 148 2.109126 GCTTGGCACCTCACCGATC 61.109 63.158 0.00 0.00 0.00 3.69
148 149 2.045926 GCTTGGCACCTCACCGAT 60.046 61.111 0.00 0.00 0.00 4.18
149 150 4.680237 CGCTTGGCACCTCACCGA 62.680 66.667 0.00 0.00 0.00 4.69
151 152 4.329545 TCCGCTTGGCACCTCACC 62.330 66.667 0.00 0.00 0.00 4.02
152 153 2.527951 ATCTCCGCTTGGCACCTCAC 62.528 60.000 0.00 0.00 0.00 3.51
153 154 0.975556 TATCTCCGCTTGGCACCTCA 60.976 55.000 0.00 0.00 0.00 3.86
154 155 0.394565 ATATCTCCGCTTGGCACCTC 59.605 55.000 0.00 0.00 0.00 3.85
155 156 0.107456 CATATCTCCGCTTGGCACCT 59.893 55.000 0.00 0.00 0.00 4.00
156 157 1.510480 GCATATCTCCGCTTGGCACC 61.510 60.000 0.00 0.00 0.00 5.01
157 158 1.510480 GGCATATCTCCGCTTGGCAC 61.510 60.000 0.00 0.00 35.00 5.01
158 159 1.227943 GGCATATCTCCGCTTGGCA 60.228 57.895 0.00 0.00 35.00 4.92
159 160 2.320587 CGGCATATCTCCGCTTGGC 61.321 63.158 0.53 0.00 40.46 4.52
160 161 0.946221 GTCGGCATATCTCCGCTTGG 60.946 60.000 7.82 0.00 46.05 3.61
161 162 1.278172 CGTCGGCATATCTCCGCTTG 61.278 60.000 7.82 0.00 46.05 4.01
162 163 1.007271 CGTCGGCATATCTCCGCTT 60.007 57.895 7.82 0.00 46.05 4.68
163 164 2.645567 CGTCGGCATATCTCCGCT 59.354 61.111 7.82 0.00 46.05 5.52
164 165 2.430921 CCGTCGGCATATCTCCGC 60.431 66.667 0.00 3.70 46.05 5.54
166 167 1.081376 CGACCGTCGGCATATCTCC 60.081 63.158 12.28 0.00 36.00 3.71
167 168 1.729838 GCGACCGTCGGCATATCTC 60.730 63.158 21.84 0.00 40.84 2.75
168 169 2.335369 GCGACCGTCGGCATATCT 59.665 61.111 21.84 0.00 40.84 1.98
187 188 2.663630 CTATGCCGACGGTGAGGACG 62.664 65.000 16.73 0.00 37.36 4.79
188 189 1.065928 CTATGCCGACGGTGAGGAC 59.934 63.158 16.73 0.00 0.00 3.85
189 190 0.467474 ATCTATGCCGACGGTGAGGA 60.467 55.000 16.73 9.67 0.00 3.71
190 191 0.389391 AATCTATGCCGACGGTGAGG 59.611 55.000 16.73 4.35 0.00 3.86
191 192 1.860950 CAAATCTATGCCGACGGTGAG 59.139 52.381 16.73 10.34 0.00 3.51
192 193 1.478916 TCAAATCTATGCCGACGGTGA 59.521 47.619 16.73 5.59 0.00 4.02
193 194 1.593006 GTCAAATCTATGCCGACGGTG 59.407 52.381 16.73 3.00 0.00 4.94
194 195 1.801395 CGTCAAATCTATGCCGACGGT 60.801 52.381 16.73 0.00 44.21 4.83
195 196 0.852777 CGTCAAATCTATGCCGACGG 59.147 55.000 10.29 10.29 44.21 4.79
197 198 1.517276 CGTCGTCAAATCTATGCCGAC 59.483 52.381 1.27 1.27 40.75 4.79
198 199 1.133598 ACGTCGTCAAATCTATGCCGA 59.866 47.619 0.00 0.00 0.00 5.54
199 200 1.556564 ACGTCGTCAAATCTATGCCG 58.443 50.000 0.00 0.00 0.00 5.69
200 201 3.060473 GCTAACGTCGTCAAATCTATGCC 60.060 47.826 0.00 0.00 0.00 4.40
201 202 3.060473 GGCTAACGTCGTCAAATCTATGC 60.060 47.826 0.00 0.00 0.00 3.14
202 203 3.179795 CGGCTAACGTCGTCAAATCTATG 59.820 47.826 0.00 0.00 37.93 2.23
203 204 3.369385 CGGCTAACGTCGTCAAATCTAT 58.631 45.455 0.00 0.00 37.93 1.98
204 205 2.789208 CGGCTAACGTCGTCAAATCTA 58.211 47.619 0.00 0.00 37.93 1.98
205 206 1.625616 CGGCTAACGTCGTCAAATCT 58.374 50.000 0.00 0.00 37.93 2.40
206 207 0.024619 GCGGCTAACGTCGTCAAATC 59.975 55.000 0.00 0.00 46.52 2.17
207 208 0.389426 AGCGGCTAACGTCGTCAAAT 60.389 50.000 0.00 0.00 46.52 2.32
208 209 1.007038 AGCGGCTAACGTCGTCAAA 60.007 52.632 0.00 0.00 46.52 2.69
209 210 1.731613 CAGCGGCTAACGTCGTCAA 60.732 57.895 0.26 0.00 46.52 3.18
210 211 2.126618 CAGCGGCTAACGTCGTCA 60.127 61.111 0.26 0.00 46.52 4.35
211 212 2.879462 CCAGCGGCTAACGTCGTC 60.879 66.667 0.26 0.00 46.52 4.20
212 213 3.621892 GACCAGCGGCTAACGTCGT 62.622 63.158 0.26 0.00 46.52 4.34
213 214 2.879462 GACCAGCGGCTAACGTCG 60.879 66.667 0.26 0.00 46.52 5.12
214 215 2.092882 GTGACCAGCGGCTAACGTC 61.093 63.158 0.26 9.46 46.52 4.34
215 216 2.048503 GTGACCAGCGGCTAACGT 60.049 61.111 0.26 0.00 46.52 3.99
217 218 2.813908 CCGTGACCAGCGGCTAAC 60.814 66.667 0.26 0.00 42.82 2.34
225 226 4.065281 GACCCCGTCCGTGACCAG 62.065 72.222 0.00 0.00 0.00 4.00
245 246 2.512974 GGCATAACCGTGGACCCG 60.513 66.667 0.00 0.00 0.00 5.28
261 262 2.469516 GGCATAAACCAGCCGTCGG 61.470 63.158 6.99 6.99 41.70 4.79
262 263 3.098555 GGCATAAACCAGCCGTCG 58.901 61.111 0.00 0.00 41.70 5.12
267 268 3.098555 CCGTCGGCATAAACCAGC 58.901 61.111 0.00 0.00 0.00 4.85
284 285 4.077188 GAACACGCCGACAGCTGC 62.077 66.667 15.27 5.81 40.39 5.25
285 286 2.356313 AGAACACGCCGACAGCTG 60.356 61.111 13.48 13.48 40.39 4.24
286 287 2.049063 GAGAACACGCCGACAGCT 60.049 61.111 0.00 0.00 40.39 4.24
287 288 2.355837 TGAGAACACGCCGACAGC 60.356 61.111 0.00 0.00 38.52 4.40
288 289 0.109086 ATCTGAGAACACGCCGACAG 60.109 55.000 0.00 0.00 0.00 3.51
289 290 1.132453 CTATCTGAGAACACGCCGACA 59.868 52.381 0.00 0.00 0.00 4.35
290 291 1.534175 CCTATCTGAGAACACGCCGAC 60.534 57.143 0.00 0.00 0.00 4.79
291 292 0.738975 CCTATCTGAGAACACGCCGA 59.261 55.000 0.00 0.00 0.00 5.54
292 293 0.872021 GCCTATCTGAGAACACGCCG 60.872 60.000 0.00 0.00 0.00 6.46
293 294 0.530870 GGCCTATCTGAGAACACGCC 60.531 60.000 0.00 0.00 0.00 5.68
294 295 0.872021 CGGCCTATCTGAGAACACGC 60.872 60.000 0.00 0.00 0.00 5.34
295 296 0.738975 TCGGCCTATCTGAGAACACG 59.261 55.000 0.00 0.00 0.00 4.49
296 297 1.534175 CGTCGGCCTATCTGAGAACAC 60.534 57.143 0.00 0.00 0.00 3.32
297 298 0.738975 CGTCGGCCTATCTGAGAACA 59.261 55.000 0.00 0.00 0.00 3.18
298 299 1.022735 TCGTCGGCCTATCTGAGAAC 58.977 55.000 0.00 0.00 0.00 3.01
299 300 1.022735 GTCGTCGGCCTATCTGAGAA 58.977 55.000 0.00 0.00 0.00 2.87
300 301 0.818445 GGTCGTCGGCCTATCTGAGA 60.818 60.000 9.10 0.00 0.00 3.27
301 302 1.101635 TGGTCGTCGGCCTATCTGAG 61.102 60.000 18.28 0.00 0.00 3.35
302 303 0.467474 ATGGTCGTCGGCCTATCTGA 60.467 55.000 18.28 0.00 0.00 3.27
303 304 0.389391 AATGGTCGTCGGCCTATCTG 59.611 55.000 18.28 0.00 0.00 2.90
304 305 1.120530 AAATGGTCGTCGGCCTATCT 58.879 50.000 18.28 0.00 0.00 1.98
305 306 1.597663 CAAAATGGTCGTCGGCCTATC 59.402 52.381 18.28 0.00 0.00 2.08
306 307 1.065709 ACAAAATGGTCGTCGGCCTAT 60.066 47.619 18.28 6.22 0.00 2.57
307 308 0.322322 ACAAAATGGTCGTCGGCCTA 59.678 50.000 18.28 3.85 0.00 3.93
308 309 1.072505 ACAAAATGGTCGTCGGCCT 59.927 52.632 18.28 0.00 0.00 5.19
309 310 1.209127 CACAAAATGGTCGTCGGCC 59.791 57.895 9.51 9.51 0.00 6.13
310 311 1.442017 GCACAAAATGGTCGTCGGC 60.442 57.895 0.00 0.00 0.00 5.54
311 312 1.209127 GGCACAAAATGGTCGTCGG 59.791 57.895 0.00 0.00 0.00 4.79
312 313 1.154488 CGGCACAAAATGGTCGTCG 60.154 57.895 0.00 0.00 0.00 5.12
313 314 0.110373 GTCGGCACAAAATGGTCGTC 60.110 55.000 0.00 0.00 0.00 4.20
314 315 1.837538 CGTCGGCACAAAATGGTCGT 61.838 55.000 0.00 0.00 0.00 4.34
315 316 1.154488 CGTCGGCACAAAATGGTCG 60.154 57.895 0.00 0.00 0.00 4.79
316 317 1.209127 CCGTCGGCACAAAATGGTC 59.791 57.895 0.00 0.00 0.00 4.02
317 318 3.350377 CCGTCGGCACAAAATGGT 58.650 55.556 0.00 0.00 0.00 3.55
328 329 1.066918 GGTGTATACTGGCCGTCGG 59.933 63.158 6.99 6.99 0.00 4.79
329 330 1.298863 CGGTGTATACTGGCCGTCG 60.299 63.158 18.92 0.00 39.41 5.12
330 331 0.248784 GTCGGTGTATACTGGCCGTC 60.249 60.000 23.09 17.74 44.07 4.79
331 332 1.811860 GTCGGTGTATACTGGCCGT 59.188 57.895 23.09 1.25 44.07 5.68
332 333 1.298863 CGTCGGTGTATACTGGCCG 60.299 63.158 20.25 20.25 44.95 6.13
333 334 0.248784 GTCGTCGGTGTATACTGGCC 60.249 60.000 4.17 0.00 34.22 5.36
334 335 0.248784 GGTCGTCGGTGTATACTGGC 60.249 60.000 4.17 0.00 34.40 4.85
335 336 1.065102 CTGGTCGTCGGTGTATACTGG 59.935 57.143 4.17 0.00 33.84 4.00
336 337 1.065102 CCTGGTCGTCGGTGTATACTG 59.935 57.143 4.17 0.00 34.36 2.74
337 338 1.065199 TCCTGGTCGTCGGTGTATACT 60.065 52.381 4.17 0.00 0.00 2.12
338 339 1.064654 GTCCTGGTCGTCGGTGTATAC 59.935 57.143 0.00 0.00 0.00 1.47
339 340 1.382522 GTCCTGGTCGTCGGTGTATA 58.617 55.000 0.00 0.00 0.00 1.47
340 341 1.651240 CGTCCTGGTCGTCGGTGTAT 61.651 60.000 5.15 0.00 0.00 2.29
341 342 2.327343 CGTCCTGGTCGTCGGTGTA 61.327 63.158 5.15 0.00 0.00 2.90
342 343 3.667282 CGTCCTGGTCGTCGGTGT 61.667 66.667 5.15 0.00 0.00 4.16
343 344 3.667282 ACGTCCTGGTCGTCGGTG 61.667 66.667 13.10 0.00 36.85 4.94
344 345 3.667282 CACGTCCTGGTCGTCGGT 61.667 66.667 15.82 0.00 39.55 4.69
345 346 4.415332 CCACGTCCTGGTCGTCGG 62.415 72.222 15.82 15.70 39.55 4.79
347 348 3.681835 AGCCACGTCCTGGTCGTC 61.682 66.667 15.82 6.54 42.99 4.20
348 349 3.991051 CAGCCACGTCCTGGTCGT 61.991 66.667 13.10 13.10 42.99 4.34
349 350 3.916392 GACAGCCACGTCCTGGTCG 62.916 68.421 11.71 11.71 42.99 4.79
350 351 2.048127 GACAGCCACGTCCTGGTC 60.048 66.667 15.04 4.82 42.99 4.02
351 352 3.991051 CGACAGCCACGTCCTGGT 61.991 66.667 15.04 0.00 42.99 4.00
352 353 4.742201 CCGACAGCCACGTCCTGG 62.742 72.222 15.04 2.23 44.08 4.45
355 356 3.365291 TATGCCGACAGCCACGTCC 62.365 63.158 0.00 0.00 42.71 4.79
356 357 1.878522 CTATGCCGACAGCCACGTC 60.879 63.158 0.00 0.00 42.71 4.34
357 358 2.184322 CTATGCCGACAGCCACGT 59.816 61.111 0.00 0.00 42.71 4.49
358 359 3.264897 GCTATGCCGACAGCCACG 61.265 66.667 0.00 0.00 42.71 4.94
359 360 1.884926 GAGCTATGCCGACAGCCAC 60.885 63.158 0.00 0.00 42.71 5.01
360 361 1.898330 TTGAGCTATGCCGACAGCCA 61.898 55.000 0.00 0.00 42.71 4.75
361 362 0.744414 TTTGAGCTATGCCGACAGCC 60.744 55.000 0.00 0.00 42.71 4.85
362 363 0.654683 CTTTGAGCTATGCCGACAGC 59.345 55.000 0.00 0.00 44.14 4.40
363 364 2.015736 ACTTTGAGCTATGCCGACAG 57.984 50.000 0.00 0.00 0.00 3.51
364 365 3.457234 CATACTTTGAGCTATGCCGACA 58.543 45.455 0.00 0.00 0.00 4.35
365 366 2.221981 GCATACTTTGAGCTATGCCGAC 59.778 50.000 5.71 0.00 39.51 4.79
366 367 2.483876 GCATACTTTGAGCTATGCCGA 58.516 47.619 5.71 0.00 39.51 5.54
367 368 2.957576 GCATACTTTGAGCTATGCCG 57.042 50.000 5.71 0.00 39.51 5.69
369 370 3.546815 CGTTGGCATACTTTGAGCTATGC 60.547 47.826 8.14 8.14 43.07 3.14
370 371 3.002656 CCGTTGGCATACTTTGAGCTATG 59.997 47.826 0.00 0.00 0.00 2.23
371 372 3.206150 CCGTTGGCATACTTTGAGCTAT 58.794 45.455 0.00 0.00 0.00 2.97
372 373 2.627945 CCGTTGGCATACTTTGAGCTA 58.372 47.619 0.00 0.00 0.00 3.32
373 374 1.453155 CCGTTGGCATACTTTGAGCT 58.547 50.000 0.00 0.00 0.00 4.09
374 375 3.996825 CCGTTGGCATACTTTGAGC 57.003 52.632 0.00 0.00 0.00 4.26
396 397 1.732683 GCCAAAACAATGCCGACGG 60.733 57.895 10.29 10.29 0.00 4.79
397 398 1.732683 GGCCAAAACAATGCCGACG 60.733 57.895 0.00 0.00 35.08 5.12
398 399 4.260194 GGCCAAAACAATGCCGAC 57.740 55.556 0.00 0.00 35.08 4.79
401 402 1.732683 CGACGGCCAAAACAATGCC 60.733 57.895 2.24 0.00 41.85 4.40
402 403 1.732683 CCGACGGCCAAAACAATGC 60.733 57.895 2.24 0.00 0.00 3.56
403 404 1.080839 CCCGACGGCCAAAACAATG 60.081 57.895 8.86 0.00 0.00 2.82
404 405 2.272447 CCCCGACGGCCAAAACAAT 61.272 57.895 8.86 0.00 0.00 2.71
405 406 2.335092 TACCCCGACGGCCAAAACAA 62.335 55.000 8.86 0.00 33.26 2.83
406 407 2.734948 CTACCCCGACGGCCAAAACA 62.735 60.000 8.86 0.00 33.26 2.83
407 408 2.032376 TACCCCGACGGCCAAAAC 59.968 61.111 8.86 0.00 33.26 2.43
408 409 2.348243 CTACCCCGACGGCCAAAA 59.652 61.111 8.86 0.00 33.26 2.44
409 410 3.708544 CCTACCCCGACGGCCAAA 61.709 66.667 8.86 0.00 33.26 3.28
410 411 4.700448 TCCTACCCCGACGGCCAA 62.700 66.667 8.86 0.00 33.26 4.52
413 414 2.176314 AAAAGTCCTACCCCGACGGC 62.176 60.000 8.86 0.00 35.33 5.68
414 415 0.322648 AAAAAGTCCTACCCCGACGG 59.677 55.000 6.99 6.99 35.33 4.79
415 416 3.921257 AAAAAGTCCTACCCCGACG 57.079 52.632 0.00 0.00 35.33 5.12
430 431 1.004979 CCCCCATCACTACCGGAAAAA 59.995 52.381 9.46 0.00 0.00 1.94
431 432 0.621609 CCCCCATCACTACCGGAAAA 59.378 55.000 9.46 0.00 0.00 2.29
432 433 0.548197 ACCCCCATCACTACCGGAAA 60.548 55.000 9.46 0.00 0.00 3.13
433 434 0.548197 AACCCCCATCACTACCGGAA 60.548 55.000 9.46 0.00 0.00 4.30
434 435 1.081462 AACCCCCATCACTACCGGA 59.919 57.895 9.46 0.00 0.00 5.14
435 436 1.223487 CAACCCCCATCACTACCGG 59.777 63.158 0.00 0.00 0.00 5.28
436 437 0.107848 GACAACCCCCATCACTACCG 60.108 60.000 0.00 0.00 0.00 4.02
437 438 0.988832 TGACAACCCCCATCACTACC 59.011 55.000 0.00 0.00 0.00 3.18
438 439 1.628846 ACTGACAACCCCCATCACTAC 59.371 52.381 0.00 0.00 0.00 2.73
439 440 1.906574 GACTGACAACCCCCATCACTA 59.093 52.381 0.00 0.00 0.00 2.74
440 441 0.693049 GACTGACAACCCCCATCACT 59.307 55.000 0.00 0.00 0.00 3.41
441 442 0.400213 TGACTGACAACCCCCATCAC 59.600 55.000 0.00 0.00 0.00 3.06
442 443 0.692476 CTGACTGACAACCCCCATCA 59.308 55.000 0.00 0.00 0.00 3.07
443 444 0.693049 ACTGACTGACAACCCCCATC 59.307 55.000 0.00 0.00 0.00 3.51
446 447 1.375326 GGACTGACTGACAACCCCC 59.625 63.158 0.00 0.00 0.00 5.40
449 450 0.319641 GTCCGGACTGACTGACAACC 60.320 60.000 27.64 0.00 32.39 3.77
456 457 2.651361 CAAGCGTCCGGACTGACT 59.349 61.111 30.92 21.83 32.97 3.41
467 468 2.302157 GCCCTATATCTAACCCAAGCGT 59.698 50.000 0.00 0.00 0.00 5.07
477 478 4.476297 TCCAACAAGACGCCCTATATCTA 58.524 43.478 0.00 0.00 0.00 1.98
530 544 8.349882 AGTATCTATAACCGGACCCCTTATATT 58.650 37.037 9.46 0.00 0.00 1.28
557 571 8.066595 CGATCTGTTAAATCTGAATGGCTTAAG 58.933 37.037 0.00 0.00 0.00 1.85
558 572 7.552687 ACGATCTGTTAAATCTGAATGGCTTAA 59.447 33.333 0.00 0.00 0.00 1.85
564 578 6.291849 GGTCGACGATCTGTTAAATCTGAATG 60.292 42.308 9.92 0.00 0.00 2.67
565 579 5.749109 GGTCGACGATCTGTTAAATCTGAAT 59.251 40.000 9.92 0.00 0.00 2.57
602 616 3.002759 AGAAGAACAAAAGAGACAAGCGC 59.997 43.478 0.00 0.00 0.00 5.92
703 718 7.060383 TGATCAAAAGGGCTATTGACAAAAA 57.940 32.000 0.00 0.00 38.29 1.94
725 740 7.591057 GCACAGCGCTAAATATAAATCAAATGA 59.409 33.333 10.99 0.00 37.77 2.57
749 764 9.414295 CTGAATTTTGAATCTTATTTCTGTGCA 57.586 29.630 0.00 0.00 0.00 4.57
789 809 8.773645 CAACGCATTTATCCTAATCTATGACAA 58.226 33.333 0.00 0.00 0.00 3.18
790 810 7.095229 GCAACGCATTTATCCTAATCTATGACA 60.095 37.037 0.00 0.00 0.00 3.58
791 811 7.095229 TGCAACGCATTTATCCTAATCTATGAC 60.095 37.037 0.00 0.00 31.71 3.06
927 1476 0.327287 TAGACGAGGAGGAGGAGGGA 60.327 60.000 0.00 0.00 0.00 4.20
934 1483 6.699242 TCTTCCTAATATAGACGAGGAGGA 57.301 41.667 0.00 0.00 40.71 3.71
1083 1635 3.766691 CCGTCGGTGGGGTCGAAT 61.767 66.667 2.08 0.00 38.42 3.34
1672 2738 1.447838 CGTTGCCGCCATACAGAGT 60.448 57.895 0.00 0.00 0.00 3.24
1796 2877 0.108424 GCTGTCACTCTTCATCGCCT 60.108 55.000 0.00 0.00 0.00 5.52
1934 3270 1.915489 TCTGGCCCAGCTGATTAAGAA 59.085 47.619 17.39 0.00 0.00 2.52
1935 3271 1.583556 TCTGGCCCAGCTGATTAAGA 58.416 50.000 17.39 10.01 0.00 2.10
1937 3273 1.143684 GGATCTGGCCCAGCTGATTAA 59.856 52.381 17.39 0.00 0.00 1.40
1963 3302 4.018490 TCTCCAGCGTAGTATTGGTTGTA 58.982 43.478 0.00 0.00 33.65 2.41
2028 3367 0.319900 CGTTGTAGCCACACAGAGCT 60.320 55.000 0.00 0.00 43.20 4.09
2060 3399 1.019278 GGCGCTCTCGGTTTTCATGA 61.019 55.000 7.64 0.00 35.95 3.07
2081 3420 0.378610 GCAGGGCAAAATAGTCGAGC 59.621 55.000 0.00 0.00 0.00 5.03
2189 3536 0.965866 TTCACTCTCGATCGGTGGCT 60.966 55.000 16.41 0.00 0.00 4.75
2224 3577 7.787424 GCTATCCCATATCCTAGTTCCTAGATT 59.213 40.741 0.00 0.00 36.26 2.40
2285 3640 1.886542 CGATCGTAGACCATCCATCCA 59.113 52.381 7.03 0.00 42.51 3.41
2286 3641 1.402984 GCGATCGTAGACCATCCATCC 60.403 57.143 17.81 0.00 42.51 3.51
2301 3659 0.307760 AAAAATCCGGATGCGCGATC 59.692 50.000 19.95 10.22 0.00 3.69
2322 3680 9.802039 ATGTAGTAACAAATTTAAGGAGTTCCA 57.198 29.630 0.28 0.00 39.58 3.53
2335 3693 7.386848 AGCAACGTTGAGTATGTAGTAACAAAT 59.613 33.333 31.62 0.00 39.58 2.32
2336 3694 6.702723 AGCAACGTTGAGTATGTAGTAACAAA 59.297 34.615 31.62 0.00 39.58 2.83
2337 3695 6.144886 CAGCAACGTTGAGTATGTAGTAACAA 59.855 38.462 31.62 0.00 39.58 2.83
2339 3697 5.444218 GCAGCAACGTTGAGTATGTAGTAAC 60.444 44.000 31.62 8.88 0.00 2.50
2351 3709 1.597854 CCAGAGGCAGCAACGTTGA 60.598 57.895 31.62 0.00 0.00 3.18
2355 3713 1.165907 TTCAACCAGAGGCAGCAACG 61.166 55.000 0.00 0.00 0.00 4.10
2360 3718 2.856222 AGAACTTTCAACCAGAGGCAG 58.144 47.619 0.00 0.00 0.00 4.85
2361 3719 3.297134 AAGAACTTTCAACCAGAGGCA 57.703 42.857 0.00 0.00 0.00 4.75
2362 3720 4.655762 AAAAGAACTTTCAACCAGAGGC 57.344 40.909 0.21 0.00 31.45 4.70
2413 3771 6.375455 ACATTCAGGAAGAAAATTAGCACGAT 59.625 34.615 0.00 0.00 40.22 3.73
2414 3772 5.705441 ACATTCAGGAAGAAAATTAGCACGA 59.295 36.000 0.00 0.00 40.22 4.35
2415 3773 5.942872 ACATTCAGGAAGAAAATTAGCACG 58.057 37.500 0.00 0.00 40.22 5.34
2420 3778 9.866655 AGCCATATACATTCAGGAAGAAAATTA 57.133 29.630 0.00 0.00 40.22 1.40
2421 3779 8.773033 AGCCATATACATTCAGGAAGAAAATT 57.227 30.769 0.00 0.00 40.22 1.82
2422 3780 7.173907 CGAGCCATATACATTCAGGAAGAAAAT 59.826 37.037 0.00 0.00 40.22 1.82
2423 3781 6.483307 CGAGCCATATACATTCAGGAAGAAAA 59.517 38.462 0.00 0.00 40.22 2.29
2424 3782 5.991606 CGAGCCATATACATTCAGGAAGAAA 59.008 40.000 0.00 0.00 40.22 2.52
2425 3783 5.304357 TCGAGCCATATACATTCAGGAAGAA 59.696 40.000 0.00 0.00 41.28 2.52
2426 3784 4.832823 TCGAGCCATATACATTCAGGAAGA 59.167 41.667 0.00 0.00 0.00 2.87
2427 3785 4.926238 GTCGAGCCATATACATTCAGGAAG 59.074 45.833 0.00 0.00 0.00 3.46
2428 3786 4.588951 AGTCGAGCCATATACATTCAGGAA 59.411 41.667 0.00 0.00 0.00 3.36
2429 3787 4.152647 AGTCGAGCCATATACATTCAGGA 58.847 43.478 0.00 0.00 0.00 3.86
2430 3788 4.527509 AGTCGAGCCATATACATTCAGG 57.472 45.455 0.00 0.00 0.00 3.86
2431 3789 7.748031 GATTAGTCGAGCCATATACATTCAG 57.252 40.000 0.00 0.00 0.00 3.02
2448 3806 4.570772 TGCTTTTCCTATGCACGATTAGTC 59.429 41.667 0.00 0.00 32.50 2.59
2449 3807 4.513442 TGCTTTTCCTATGCACGATTAGT 58.487 39.130 0.00 0.00 32.50 2.24
2450 3808 5.484173 TTGCTTTTCCTATGCACGATTAG 57.516 39.130 0.00 0.00 36.72 1.73
2451 3809 6.540551 TGTATTGCTTTTCCTATGCACGATTA 59.459 34.615 0.00 0.00 36.72 1.75
2452 3810 4.989279 ATTGCTTTTCCTATGCACGATT 57.011 36.364 0.00 0.00 36.72 3.34
2453 3811 4.881273 TGTATTGCTTTTCCTATGCACGAT 59.119 37.500 0.00 0.00 36.72 3.73
2454 3812 4.257731 TGTATTGCTTTTCCTATGCACGA 58.742 39.130 0.00 0.00 36.72 4.35
2455 3813 4.094887 ACTGTATTGCTTTTCCTATGCACG 59.905 41.667 0.00 0.00 36.72 5.34
2456 3814 5.335127 CACTGTATTGCTTTTCCTATGCAC 58.665 41.667 0.00 0.00 36.72 4.57
2457 3815 4.142403 GCACTGTATTGCTTTTCCTATGCA 60.142 41.667 0.00 0.00 39.59 3.96
2458 3816 4.354587 GCACTGTATTGCTTTTCCTATGC 58.645 43.478 0.00 0.00 39.59 3.14
2459 3817 4.094887 ACGCACTGTATTGCTTTTCCTATG 59.905 41.667 0.00 0.00 40.62 2.23
2460 3818 4.094887 CACGCACTGTATTGCTTTTCCTAT 59.905 41.667 0.00 0.00 40.62 2.57
2461 3819 3.435327 CACGCACTGTATTGCTTTTCCTA 59.565 43.478 0.00 0.00 40.62 2.94
2462 3820 2.226437 CACGCACTGTATTGCTTTTCCT 59.774 45.455 0.00 0.00 40.62 3.36
2463 3821 2.031157 ACACGCACTGTATTGCTTTTCC 60.031 45.455 0.00 0.00 40.62 3.13
2464 3822 3.268013 ACACGCACTGTATTGCTTTTC 57.732 42.857 0.00 0.00 40.62 2.29
2465 3823 3.813166 AGTACACGCACTGTATTGCTTTT 59.187 39.130 0.00 0.00 40.62 2.27
2466 3824 3.399330 AGTACACGCACTGTATTGCTTT 58.601 40.909 0.00 0.00 40.62 3.51
2467 3825 3.040147 AGTACACGCACTGTATTGCTT 57.960 42.857 0.00 0.00 40.62 3.91
2468 3826 2.743636 AGTACACGCACTGTATTGCT 57.256 45.000 0.00 0.00 40.62 3.91
2469 3827 3.247442 TGTAGTACACGCACTGTATTGC 58.753 45.455 0.00 0.00 37.69 3.56
2470 3828 3.857665 CCTGTAGTACACGCACTGTATTG 59.142 47.826 0.00 0.00 37.69 1.90
2471 3829 3.119245 CCCTGTAGTACACGCACTGTATT 60.119 47.826 0.00 0.00 37.69 1.89
2472 3830 2.426024 CCCTGTAGTACACGCACTGTAT 59.574 50.000 0.00 0.00 37.69 2.29
2473 3831 1.814394 CCCTGTAGTACACGCACTGTA 59.186 52.381 0.00 0.00 33.91 2.74
2474 3832 0.601558 CCCTGTAGTACACGCACTGT 59.398 55.000 0.00 0.00 36.82 3.55
2475 3833 0.885879 TCCCTGTAGTACACGCACTG 59.114 55.000 0.00 0.00 0.00 3.66
2476 3834 1.271656 GTTCCCTGTAGTACACGCACT 59.728 52.381 0.00 0.00 0.00 4.40
2477 3835 1.000060 TGTTCCCTGTAGTACACGCAC 60.000 52.381 0.00 0.00 0.00 5.34
2478 3836 1.271379 CTGTTCCCTGTAGTACACGCA 59.729 52.381 0.00 0.00 0.00 5.24
2479 3837 1.271656 ACTGTTCCCTGTAGTACACGC 59.728 52.381 0.00 0.00 0.00 5.34
2480 3838 2.352421 CCACTGTTCCCTGTAGTACACG 60.352 54.545 0.00 0.00 0.00 4.49
2481 3839 2.612221 GCCACTGTTCCCTGTAGTACAC 60.612 54.545 0.00 0.00 0.00 2.90
2482 3840 1.621814 GCCACTGTTCCCTGTAGTACA 59.378 52.381 2.36 2.36 0.00 2.90
2483 3841 1.403780 CGCCACTGTTCCCTGTAGTAC 60.404 57.143 0.00 0.00 0.00 2.73
2484 3842 0.892755 CGCCACTGTTCCCTGTAGTA 59.107 55.000 0.00 0.00 0.00 1.82
2485 3843 1.671742 CGCCACTGTTCCCTGTAGT 59.328 57.895 0.00 0.00 0.00 2.73
2486 3844 1.741770 GCGCCACTGTTCCCTGTAG 60.742 63.158 0.00 0.00 0.00 2.74
2487 3845 2.345991 GCGCCACTGTTCCCTGTA 59.654 61.111 0.00 0.00 0.00 2.74
2488 3846 4.988598 CGCGCCACTGTTCCCTGT 62.989 66.667 0.00 0.00 0.00 4.00
2493 3851 4.012895 CACACCGCGCCACTGTTC 62.013 66.667 0.00 0.00 0.00 3.18
2510 3868 1.270678 ACTGCACTACGGAAAAGGTCC 60.271 52.381 0.00 0.00 43.90 4.46
2511 3869 2.165319 ACTGCACTACGGAAAAGGTC 57.835 50.000 0.00 0.00 0.00 3.85
2512 3870 2.612221 GCTACTGCACTACGGAAAAGGT 60.612 50.000 0.00 0.00 39.41 3.50
2513 3871 2.000447 GCTACTGCACTACGGAAAAGG 59.000 52.381 0.00 0.00 39.41 3.11
2514 3872 2.683968 TGCTACTGCACTACGGAAAAG 58.316 47.619 0.00 0.00 45.31 2.27
2515 3873 2.823924 TGCTACTGCACTACGGAAAA 57.176 45.000 0.00 0.00 45.31 2.29
2545 3903 2.619646 GGCGAGTGTTTTACCCTCAAAA 59.380 45.455 0.00 0.00 0.00 2.44
2617 3976 7.453393 TCTCTTCACCATCAGACTGTATTTTT 58.547 34.615 1.59 0.00 0.00 1.94
2631 3990 3.713248 TGATGTATGGCTCTCTTCACCAT 59.287 43.478 0.00 0.00 45.94 3.55
2651 4010 5.721480 TGAGAATGGGAGATGAACTTACTGA 59.279 40.000 0.00 0.00 0.00 3.41
2673 4032 5.297547 CCGCTGATAAATTAGCTAAGGTGA 58.702 41.667 12.54 0.00 37.27 4.02
2687 4046 1.151777 GCTAACGCTGCCGCTGATAA 61.152 55.000 0.73 0.00 38.22 1.75
2769 4128 2.043939 TCTGCCCTAGGTCCTCTTGTTA 59.956 50.000 8.29 0.00 0.00 2.41
2791 4150 8.055279 TGCTTAATAACCCTGAAAAGAATCTG 57.945 34.615 0.00 0.00 0.00 2.90
2838 4197 3.011818 CACAAGCTCCATATTGAGTGCA 58.988 45.455 5.75 0.00 34.74 4.57
2881 4240 0.311790 CTTGCAAGAAGGCGCTTGAA 59.688 50.000 22.31 12.20 46.31 2.69
2886 4245 3.621892 CTGGCTTGCAAGAAGGCGC 62.622 63.158 30.39 13.97 44.73 6.53
2997 4356 4.715713 GAAACATATGGGTAAGGGAGGTC 58.284 47.826 7.80 0.00 0.00 3.85
3026 4385 1.844544 AAAGCCAATACGGACGGGGT 61.845 55.000 0.00 0.00 36.56 4.95
3086 4445 1.072331 AGTGAAGTTGAAGCCACCGAT 59.928 47.619 0.00 0.00 0.00 4.18
3208 4567 4.323417 CTGTGTATGGACTTTGGTTAGCA 58.677 43.478 0.00 0.00 0.00 3.49
3250 4609 1.078497 ACATGCGCCGGAGATTGAA 60.078 52.632 10.31 0.00 0.00 2.69
3407 4766 1.280206 GGTCGTGAAGAAACGGGTCG 61.280 60.000 0.00 0.00 43.73 4.79
3421 4780 4.986645 TGCGCTGCATGTGGTCGT 62.987 61.111 9.73 0.00 31.71 4.34
3430 4789 0.804364 CTGGAGTATTTTGCGCTGCA 59.196 50.000 9.73 0.00 36.47 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.