Multiple sequence alignment - TraesCS6B01G323300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G323300 chr6B 100.000 2951 0 0 1 2951 572181698 572184648 0.000000e+00 5450.0
1 TraesCS6B01G323300 chr6B 92.937 269 19 0 43 311 619658228 619658496 2.760000e-105 392.0
2 TraesCS6B01G323300 chr6B 90.690 290 23 3 24 311 506627955 506628242 1.660000e-102 383.0
3 TraesCS6B01G323300 chr6D 94.721 1326 61 5 666 1988 382578487 382579806 0.000000e+00 2052.0
4 TraesCS6B01G323300 chr6D 84.749 918 109 18 2059 2951 42100426 42099515 0.000000e+00 891.0
5 TraesCS6B01G323300 chr6D 84.362 243 23 5 346 578 382564787 382565024 1.060000e-54 224.0
6 TraesCS6B01G323300 chr6D 89.130 92 7 1 624 715 382565021 382565109 8.650000e-21 111.0
7 TraesCS6B01G323300 chr6D 100.000 38 0 0 434 471 382578308 382578345 1.470000e-08 71.3
8 TraesCS6B01G323300 chr6A 92.171 1405 78 21 665 2058 524369874 524371257 0.000000e+00 1956.0
9 TraesCS6B01G323300 chr1D 85.854 1025 112 19 993 1985 28611923 28612946 0.000000e+00 1059.0
10 TraesCS6B01G323300 chr1D 86.573 782 95 7 2177 2951 293934836 293935614 0.000000e+00 854.0
11 TraesCS6B01G323300 chr1B 85.356 997 118 18 1012 1989 47205672 47206659 0.000000e+00 1007.0
12 TraesCS6B01G323300 chr3A 86.260 917 98 17 2060 2951 719382741 719383654 0.000000e+00 970.0
13 TraesCS6B01G323300 chr3A 87.950 722 83 4 2181 2899 135577669 135576949 0.000000e+00 848.0
14 TraesCS6B01G323300 chr2D 85.606 924 104 16 2053 2951 304973407 304974326 0.000000e+00 942.0
15 TraesCS6B01G323300 chr2D 84.740 924 107 19 2059 2951 601081222 601080302 0.000000e+00 894.0
16 TraesCS6B01G323300 chr4D 85.294 918 102 16 2059 2951 19065996 19066905 0.000000e+00 917.0
17 TraesCS6B01G323300 chr3D 87.275 778 92 4 2180 2951 351412140 351412916 0.000000e+00 881.0
18 TraesCS6B01G323300 chr5D 87.051 780 89 9 2180 2951 542468822 542469597 0.000000e+00 870.0
19 TraesCS6B01G323300 chr5D 85.842 784 97 11 2178 2951 558924221 558925000 0.000000e+00 821.0
20 TraesCS6B01G323300 chr7B 83.548 930 119 24 2051 2951 742026523 742025599 0.000000e+00 839.0
21 TraesCS6B01G323300 chr1A 83.441 622 90 7 1387 1995 29813338 29812717 1.540000e-157 566.0
22 TraesCS6B01G323300 chr1A 93.309 269 18 0 46 314 377646843 377646575 5.930000e-107 398.0
23 TraesCS6B01G323300 chr1A 93.609 266 17 0 46 311 555808379 555808644 5.930000e-107 398.0
24 TraesCS6B01G323300 chr1A 93.258 267 18 0 45 311 471209188 471209454 7.670000e-106 394.0
25 TraesCS6B01G323300 chr4B 94.424 269 15 0 46 314 529934375 529934107 5.880000e-112 414.0
26 TraesCS6B01G323300 chr4B 92.963 270 19 0 46 315 26330013 26330282 7.670000e-106 394.0
27 TraesCS6B01G323300 chr5B 93.309 269 18 0 46 314 274632019 274631751 5.930000e-107 398.0
28 TraesCS6B01G323300 chrUn 92.963 270 19 0 42 311 78715584 78715853 7.670000e-106 394.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G323300 chr6B 572181698 572184648 2950 False 5450.00 5450 100.0000 1 2951 1 chr6B.!!$F2 2950
1 TraesCS6B01G323300 chr6D 382578308 382579806 1498 False 1061.65 2052 97.3605 434 1988 2 chr6D.!!$F2 1554
2 TraesCS6B01G323300 chr6D 42099515 42100426 911 True 891.00 891 84.7490 2059 2951 1 chr6D.!!$R1 892
3 TraesCS6B01G323300 chr6A 524369874 524371257 1383 False 1956.00 1956 92.1710 665 2058 1 chr6A.!!$F1 1393
4 TraesCS6B01G323300 chr1D 28611923 28612946 1023 False 1059.00 1059 85.8540 993 1985 1 chr1D.!!$F1 992
5 TraesCS6B01G323300 chr1D 293934836 293935614 778 False 854.00 854 86.5730 2177 2951 1 chr1D.!!$F2 774
6 TraesCS6B01G323300 chr1B 47205672 47206659 987 False 1007.00 1007 85.3560 1012 1989 1 chr1B.!!$F1 977
7 TraesCS6B01G323300 chr3A 719382741 719383654 913 False 970.00 970 86.2600 2060 2951 1 chr3A.!!$F1 891
8 TraesCS6B01G323300 chr3A 135576949 135577669 720 True 848.00 848 87.9500 2181 2899 1 chr3A.!!$R1 718
9 TraesCS6B01G323300 chr2D 304973407 304974326 919 False 942.00 942 85.6060 2053 2951 1 chr2D.!!$F1 898
10 TraesCS6B01G323300 chr2D 601080302 601081222 920 True 894.00 894 84.7400 2059 2951 1 chr2D.!!$R1 892
11 TraesCS6B01G323300 chr4D 19065996 19066905 909 False 917.00 917 85.2940 2059 2951 1 chr4D.!!$F1 892
12 TraesCS6B01G323300 chr3D 351412140 351412916 776 False 881.00 881 87.2750 2180 2951 1 chr3D.!!$F1 771
13 TraesCS6B01G323300 chr5D 542468822 542469597 775 False 870.00 870 87.0510 2180 2951 1 chr5D.!!$F1 771
14 TraesCS6B01G323300 chr5D 558924221 558925000 779 False 821.00 821 85.8420 2178 2951 1 chr5D.!!$F2 773
15 TraesCS6B01G323300 chr7B 742025599 742026523 924 True 839.00 839 83.5480 2051 2951 1 chr7B.!!$R1 900
16 TraesCS6B01G323300 chr1A 29812717 29813338 621 True 566.00 566 83.4410 1387 1995 1 chr1A.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.029035 CGTATAACTCGCGAGCTGGT 59.971 55.0 34.83 20.32 0.0 4.00 F
631 640 0.110554 CGTTTTTGCCCGTACCTTCG 60.111 55.0 0.00 0.00 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1020 1041 0.394565 AGCTGAAGAACGAAGGTGCT 59.605 50.000 0.00 0.0 31.39 4.40 R
2025 2072 1.273048 GGAGCATGCATTCCAAACACA 59.727 47.619 21.98 0.0 33.55 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.667087 TTGTCAACATGGCGAGCC 58.333 55.556 7.26 7.26 0.00 4.70
26 27 2.594303 TGGCGAGCCAACACCAAG 60.594 61.111 15.24 0.00 44.12 3.61
27 28 4.043200 GGCGAGCCAACACCAAGC 62.043 66.667 9.58 0.00 35.81 4.01
28 29 4.043200 GCGAGCCAACACCAAGCC 62.043 66.667 0.00 0.00 0.00 4.35
29 30 3.726517 CGAGCCAACACCAAGCCG 61.727 66.667 0.00 0.00 0.00 5.52
30 31 2.281484 GAGCCAACACCAAGCCGA 60.281 61.111 0.00 0.00 0.00 5.54
31 32 2.281761 AGCCAACACCAAGCCGAG 60.282 61.111 0.00 0.00 0.00 4.63
32 33 2.594592 GCCAACACCAAGCCGAGT 60.595 61.111 0.00 0.00 0.00 4.18
33 34 2.617274 GCCAACACCAAGCCGAGTC 61.617 63.158 0.00 0.00 0.00 3.36
34 35 1.071471 CCAACACCAAGCCGAGTCT 59.929 57.895 0.00 0.00 0.00 3.24
35 36 0.535102 CCAACACCAAGCCGAGTCTT 60.535 55.000 0.00 0.00 0.00 3.01
36 37 0.588252 CAACACCAAGCCGAGTCTTG 59.412 55.000 5.44 5.44 42.23 3.02
45 46 2.657237 CGAGTCTTGGGCGGAAGT 59.343 61.111 0.00 0.00 0.00 3.01
46 47 1.888018 CGAGTCTTGGGCGGAAGTA 59.112 57.895 0.00 0.00 0.00 2.24
47 48 0.179134 CGAGTCTTGGGCGGAAGTAG 60.179 60.000 0.00 0.00 0.00 2.57
48 49 0.175989 GAGTCTTGGGCGGAAGTAGG 59.824 60.000 0.00 0.00 0.00 3.18
49 50 1.221021 GTCTTGGGCGGAAGTAGGG 59.779 63.158 0.00 0.00 0.00 3.53
50 51 2.124695 CTTGGGCGGAAGTAGGGC 60.125 66.667 0.00 0.00 0.00 5.19
51 52 2.609610 TTGGGCGGAAGTAGGGCT 60.610 61.111 0.00 0.00 0.00 5.19
52 53 2.876368 CTTGGGCGGAAGTAGGGCTG 62.876 65.000 0.00 0.00 0.00 4.85
53 54 4.176752 GGGCGGAAGTAGGGCTGG 62.177 72.222 0.00 0.00 0.00 4.85
54 55 3.081409 GGCGGAAGTAGGGCTGGA 61.081 66.667 0.00 0.00 0.00 3.86
55 56 2.666098 GGCGGAAGTAGGGCTGGAA 61.666 63.158 0.00 0.00 0.00 3.53
56 57 1.527370 GCGGAAGTAGGGCTGGAAT 59.473 57.895 0.00 0.00 0.00 3.01
57 58 0.107165 GCGGAAGTAGGGCTGGAATT 60.107 55.000 0.00 0.00 0.00 2.17
58 59 1.954927 CGGAAGTAGGGCTGGAATTC 58.045 55.000 0.00 0.00 0.00 2.17
59 60 1.806623 CGGAAGTAGGGCTGGAATTCG 60.807 57.143 0.00 0.00 0.00 3.34
60 61 1.485066 GGAAGTAGGGCTGGAATTCGA 59.515 52.381 0.00 0.00 0.00 3.71
61 62 2.483889 GGAAGTAGGGCTGGAATTCGAG 60.484 54.545 12.73 12.73 0.00 4.04
62 63 0.466124 AGTAGGGCTGGAATTCGAGC 59.534 55.000 28.50 28.50 45.32 5.03
66 67 3.711348 GCTGGAATTCGAGCCGAG 58.289 61.111 26.80 0.63 41.09 4.63
67 68 1.153549 GCTGGAATTCGAGCCGAGT 60.154 57.895 26.80 0.00 41.09 4.18
68 69 1.148759 GCTGGAATTCGAGCCGAGTC 61.149 60.000 26.80 3.39 41.09 3.36
69 70 0.867753 CTGGAATTCGAGCCGAGTCG 60.868 60.000 5.29 5.29 41.51 4.18
75 76 4.116328 CGAGCCGAGTCGAGCCAA 62.116 66.667 15.64 0.00 42.85 4.52
76 77 2.507324 GAGCCGAGTCGAGCCAAC 60.507 66.667 15.64 6.85 0.00 3.77
77 78 2.992114 AGCCGAGTCGAGCCAACT 60.992 61.111 15.64 0.00 0.00 3.16
78 79 2.507324 GCCGAGTCGAGCCAACTC 60.507 66.667 15.64 1.61 39.82 3.01
90 91 3.129792 CCAACTCGGCTTGACTCTC 57.870 57.895 0.00 0.00 0.00 3.20
91 92 0.605589 CCAACTCGGCTTGACTCTCT 59.394 55.000 0.00 0.00 0.00 3.10
92 93 1.819288 CCAACTCGGCTTGACTCTCTA 59.181 52.381 0.00 0.00 0.00 2.43
93 94 2.159310 CCAACTCGGCTTGACTCTCTAG 60.159 54.545 0.00 0.00 0.00 2.43
94 95 2.750166 CAACTCGGCTTGACTCTCTAGA 59.250 50.000 0.00 0.00 0.00 2.43
96 97 1.333619 CTCGGCTTGACTCTCTAGAGC 59.666 57.143 15.35 1.98 45.79 4.09
97 98 1.065053 TCGGCTTGACTCTCTAGAGCT 60.065 52.381 15.35 2.07 45.79 4.09
98 99 1.333619 CGGCTTGACTCTCTAGAGCTC 59.666 57.143 15.35 5.27 45.79 4.09
99 100 1.333619 GGCTTGACTCTCTAGAGCTCG 59.666 57.143 15.35 8.23 45.79 5.03
100 101 2.014128 GCTTGACTCTCTAGAGCTCGT 58.986 52.381 15.35 11.29 45.79 4.18
101 102 2.422127 GCTTGACTCTCTAGAGCTCGTT 59.578 50.000 15.35 0.00 45.79 3.85
102 103 3.119637 GCTTGACTCTCTAGAGCTCGTTT 60.120 47.826 15.35 0.00 45.79 3.60
103 104 4.617298 GCTTGACTCTCTAGAGCTCGTTTT 60.617 45.833 15.35 0.00 45.79 2.43
104 105 4.427096 TGACTCTCTAGAGCTCGTTTTG 57.573 45.455 15.35 1.27 45.79 2.44
105 106 3.821600 TGACTCTCTAGAGCTCGTTTTGT 59.178 43.478 15.35 4.62 45.79 2.83
106 107 4.278669 TGACTCTCTAGAGCTCGTTTTGTT 59.721 41.667 15.35 0.00 45.79 2.83
107 108 5.472478 TGACTCTCTAGAGCTCGTTTTGTTA 59.528 40.000 15.35 0.00 45.79 2.41
108 109 6.016527 TGACTCTCTAGAGCTCGTTTTGTTAA 60.017 38.462 15.35 0.00 45.79 2.01
109 110 6.926313 ACTCTCTAGAGCTCGTTTTGTTAAT 58.074 36.000 15.35 0.00 45.79 1.40
110 111 6.809196 ACTCTCTAGAGCTCGTTTTGTTAATG 59.191 38.462 15.35 0.00 45.79 1.90
111 112 6.920817 TCTCTAGAGCTCGTTTTGTTAATGA 58.079 36.000 15.35 0.00 0.00 2.57
112 113 7.030165 TCTCTAGAGCTCGTTTTGTTAATGAG 58.970 38.462 15.35 0.00 0.00 2.90
117 118 4.335272 GCTCGTTTTGTTAATGAGCTAGC 58.665 43.478 19.29 6.62 46.45 3.42
118 119 4.093556 GCTCGTTTTGTTAATGAGCTAGCT 59.906 41.667 19.45 19.45 46.45 3.32
119 120 5.725316 GCTCGTTTTGTTAATGAGCTAGCTC 60.725 44.000 33.47 33.47 46.45 4.09
120 121 4.326278 TCGTTTTGTTAATGAGCTAGCTCG 59.674 41.667 33.55 20.53 45.48 5.03
121 122 4.326278 CGTTTTGTTAATGAGCTAGCTCGA 59.674 41.667 33.55 24.40 45.48 4.04
122 123 5.551893 GTTTTGTTAATGAGCTAGCTCGAC 58.448 41.667 33.55 27.43 45.48 4.20
123 124 4.720649 TTGTTAATGAGCTAGCTCGACT 57.279 40.909 33.55 23.79 45.48 4.18
124 125 4.294416 TGTTAATGAGCTAGCTCGACTC 57.706 45.455 33.55 23.26 45.48 3.36
125 126 3.242772 TGTTAATGAGCTAGCTCGACTCG 60.243 47.826 33.55 0.00 45.48 4.18
126 127 1.669604 AATGAGCTAGCTCGACTCGA 58.330 50.000 33.55 19.29 45.48 4.04
127 128 0.941542 ATGAGCTAGCTCGACTCGAC 59.058 55.000 33.55 13.61 45.48 4.20
128 129 0.108089 TGAGCTAGCTCGACTCGACT 60.108 55.000 33.55 2.75 45.48 4.18
129 130 0.580104 GAGCTAGCTCGACTCGACTC 59.420 60.000 28.04 3.20 33.06 3.36
130 131 1.149361 AGCTAGCTCGACTCGACTCG 61.149 60.000 12.68 8.00 34.83 4.18
131 132 1.422950 GCTAGCTCGACTCGACTCGT 61.423 60.000 7.70 0.00 35.10 4.18
132 133 0.573521 CTAGCTCGACTCGACTCGTC 59.426 60.000 13.05 4.06 35.10 4.20
133 134 0.108945 TAGCTCGACTCGACTCGTCA 60.109 55.000 13.05 0.00 35.10 4.35
134 135 1.225799 GCTCGACTCGACTCGTCAC 60.226 63.158 13.05 2.52 35.10 3.67
135 136 1.628447 GCTCGACTCGACTCGTCACT 61.628 60.000 13.05 0.00 35.10 3.41
136 137 1.626747 CTCGACTCGACTCGTCACTA 58.373 55.000 13.05 0.00 35.10 2.74
137 138 2.195096 CTCGACTCGACTCGTCACTAT 58.805 52.381 13.05 0.00 35.10 2.12
138 139 3.370276 CTCGACTCGACTCGTCACTATA 58.630 50.000 13.05 0.00 35.10 1.31
139 140 3.774066 TCGACTCGACTCGTCACTATAA 58.226 45.455 13.05 0.00 35.10 0.98
140 141 3.549471 TCGACTCGACTCGTCACTATAAC 59.451 47.826 13.05 0.00 35.10 1.89
141 142 3.598893 CGACTCGACTCGTCACTATAACG 60.599 52.174 6.34 0.00 41.39 3.18
142 143 3.515630 ACTCGACTCGTCACTATAACGA 58.484 45.455 0.00 0.00 46.08 3.85
149 150 4.274421 TCGTCACTATAACGAGCTCAAG 57.726 45.455 15.40 0.13 43.65 3.02
150 151 3.688185 TCGTCACTATAACGAGCTCAAGT 59.312 43.478 15.40 0.87 43.65 3.16
151 152 4.155462 TCGTCACTATAACGAGCTCAAGTT 59.845 41.667 15.40 12.92 43.65 2.66
152 153 4.496183 CGTCACTATAACGAGCTCAAGTTC 59.504 45.833 15.40 4.05 42.62 3.01
153 154 5.399858 GTCACTATAACGAGCTCAAGTTCA 58.600 41.667 15.40 2.18 0.00 3.18
154 155 5.862323 GTCACTATAACGAGCTCAAGTTCAA 59.138 40.000 15.40 2.19 0.00 2.69
155 156 5.862323 TCACTATAACGAGCTCAAGTTCAAC 59.138 40.000 15.40 0.00 0.00 3.18
156 157 5.633601 CACTATAACGAGCTCAAGTTCAACA 59.366 40.000 15.40 0.00 0.00 3.33
157 158 6.311445 CACTATAACGAGCTCAAGTTCAACAT 59.689 38.462 15.40 4.02 0.00 2.71
158 159 6.874134 ACTATAACGAGCTCAAGTTCAACATT 59.126 34.615 15.40 0.00 0.00 2.71
159 160 3.885484 ACGAGCTCAAGTTCAACATTG 57.115 42.857 15.40 0.00 0.00 2.82
160 161 2.549754 ACGAGCTCAAGTTCAACATTGG 59.450 45.455 15.40 0.00 0.00 3.16
161 162 2.666619 CGAGCTCAAGTTCAACATTGGC 60.667 50.000 15.40 0.00 0.00 4.52
162 163 2.555757 GAGCTCAAGTTCAACATTGGCT 59.444 45.455 9.40 11.64 36.38 4.75
163 164 2.555757 AGCTCAAGTTCAACATTGGCTC 59.444 45.455 0.00 0.00 31.57 4.70
164 165 2.666619 GCTCAAGTTCAACATTGGCTCG 60.667 50.000 0.00 0.00 0.00 5.03
165 166 2.807967 CTCAAGTTCAACATTGGCTCGA 59.192 45.455 0.00 0.00 0.00 4.04
166 167 2.548057 TCAAGTTCAACATTGGCTCGAC 59.452 45.455 0.00 0.00 0.00 4.20
167 168 2.549754 CAAGTTCAACATTGGCTCGACT 59.450 45.455 0.00 0.00 0.00 4.18
168 169 2.417719 AGTTCAACATTGGCTCGACTC 58.582 47.619 0.00 0.00 0.00 3.36
169 170 1.126846 GTTCAACATTGGCTCGACTCG 59.873 52.381 0.00 0.00 0.00 4.18
170 171 0.317160 TCAACATTGGCTCGACTCGT 59.683 50.000 0.00 0.00 0.00 4.18
171 172 1.542472 TCAACATTGGCTCGACTCGTA 59.458 47.619 0.00 0.00 0.00 3.43
172 173 2.165641 TCAACATTGGCTCGACTCGTAT 59.834 45.455 0.00 0.00 0.00 3.06
173 174 3.379057 TCAACATTGGCTCGACTCGTATA 59.621 43.478 0.00 0.00 0.00 1.47
174 175 4.109766 CAACATTGGCTCGACTCGTATAA 58.890 43.478 0.00 0.00 0.00 0.98
175 176 3.703420 ACATTGGCTCGACTCGTATAAC 58.297 45.455 0.00 0.00 0.00 1.89
176 177 3.380637 ACATTGGCTCGACTCGTATAACT 59.619 43.478 0.00 0.00 0.00 2.24
177 178 3.687572 TTGGCTCGACTCGTATAACTC 57.312 47.619 0.00 0.00 0.00 3.01
178 179 1.596260 TGGCTCGACTCGTATAACTCG 59.404 52.381 0.00 0.00 0.00 4.18
179 180 1.659771 GGCTCGACTCGTATAACTCGC 60.660 57.143 0.00 0.00 0.00 5.03
180 181 1.921836 CTCGACTCGTATAACTCGCG 58.078 55.000 0.00 0.00 0.00 5.87
181 182 1.520174 CTCGACTCGTATAACTCGCGA 59.480 52.381 9.26 9.26 0.00 5.87
185 186 1.664629 CTCGTATAACTCGCGAGCTG 58.335 55.000 34.83 17.87 44.03 4.24
186 187 0.306840 TCGTATAACTCGCGAGCTGG 59.693 55.000 34.83 18.02 0.00 4.85
187 188 0.029035 CGTATAACTCGCGAGCTGGT 59.971 55.000 34.83 20.32 0.00 4.00
188 189 1.533338 CGTATAACTCGCGAGCTGGTT 60.533 52.381 34.83 23.86 0.00 3.67
189 190 2.117910 GTATAACTCGCGAGCTGGTTC 58.882 52.381 34.83 17.27 0.00 3.62
190 191 0.525668 ATAACTCGCGAGCTGGTTCG 60.526 55.000 34.83 11.21 43.23 3.95
191 192 1.859427 TAACTCGCGAGCTGGTTCGT 61.859 55.000 34.83 11.93 42.38 3.85
192 193 2.430921 CTCGCGAGCTGGTTCGTT 60.431 61.111 25.07 0.00 42.38 3.85
193 194 2.022129 CTCGCGAGCTGGTTCGTTT 61.022 57.895 25.07 0.00 42.38 3.60
194 195 0.731514 CTCGCGAGCTGGTTCGTTTA 60.732 55.000 25.07 0.00 42.38 2.01
195 196 0.731514 TCGCGAGCTGGTTCGTTTAG 60.732 55.000 3.71 0.00 42.38 1.85
196 197 1.420312 GCGAGCTGGTTCGTTTAGC 59.580 57.895 8.43 0.00 42.38 3.09
198 199 1.429463 CGAGCTGGTTCGTTTAGCTT 58.571 50.000 0.00 0.00 46.95 3.74
199 200 1.126846 CGAGCTGGTTCGTTTAGCTTG 59.873 52.381 0.00 0.00 46.95 4.01
200 201 2.143925 GAGCTGGTTCGTTTAGCTTGT 58.856 47.619 0.00 0.00 46.95 3.16
201 202 2.548480 GAGCTGGTTCGTTTAGCTTGTT 59.452 45.455 0.00 0.00 46.95 2.83
202 203 3.735591 AGCTGGTTCGTTTAGCTTGTTA 58.264 40.909 0.00 0.00 44.87 2.41
203 204 4.131596 AGCTGGTTCGTTTAGCTTGTTAA 58.868 39.130 0.00 0.00 44.87 2.01
204 205 4.213482 AGCTGGTTCGTTTAGCTTGTTAAG 59.787 41.667 0.00 0.00 44.87 1.85
306 307 9.877178 AAACAATTGTAATTTCCTTGTAACACA 57.123 25.926 12.39 0.00 30.33 3.72
308 309 9.474920 ACAATTGTAATTTCCTTGTAACACATG 57.525 29.630 9.97 0.00 0.00 3.21
309 310 9.689976 CAATTGTAATTTCCTTGTAACACATGA 57.310 29.630 0.00 0.00 0.00 3.07
310 311 9.912634 AATTGTAATTTCCTTGTAACACATGAG 57.087 29.630 0.00 0.00 0.00 2.90
311 312 6.908825 TGTAATTTCCTTGTAACACATGAGC 58.091 36.000 0.00 0.00 0.00 4.26
312 313 5.391312 AATTTCCTTGTAACACATGAGCC 57.609 39.130 0.00 0.00 0.00 4.70
313 314 3.788227 TTCCTTGTAACACATGAGCCT 57.212 42.857 0.00 0.00 0.00 4.58
314 315 3.788227 TCCTTGTAACACATGAGCCTT 57.212 42.857 0.00 0.00 0.00 4.35
315 316 3.411446 TCCTTGTAACACATGAGCCTTG 58.589 45.455 0.00 0.00 0.00 3.61
316 317 2.095059 CCTTGTAACACATGAGCCTTGC 60.095 50.000 0.00 0.00 0.00 4.01
317 318 2.566833 TGTAACACATGAGCCTTGCT 57.433 45.000 0.00 0.00 43.88 3.91
318 319 2.862541 TGTAACACATGAGCCTTGCTT 58.137 42.857 0.00 0.00 39.88 3.91
319 320 3.221771 TGTAACACATGAGCCTTGCTTT 58.778 40.909 0.00 0.00 39.88 3.51
320 321 3.253188 TGTAACACATGAGCCTTGCTTTC 59.747 43.478 0.00 0.00 39.88 2.62
321 322 1.985473 ACACATGAGCCTTGCTTTCA 58.015 45.000 0.00 0.00 39.88 2.69
322 323 2.522185 ACACATGAGCCTTGCTTTCAT 58.478 42.857 0.00 0.00 39.88 2.57
323 324 2.490903 ACACATGAGCCTTGCTTTCATC 59.509 45.455 0.00 0.00 39.88 2.92
324 325 2.753452 CACATGAGCCTTGCTTTCATCT 59.247 45.455 0.00 0.00 39.88 2.90
325 326 3.015327 ACATGAGCCTTGCTTTCATCTC 58.985 45.455 0.00 0.00 39.88 2.75
326 327 2.119801 TGAGCCTTGCTTTCATCTCC 57.880 50.000 0.00 0.00 39.88 3.71
327 328 1.340405 TGAGCCTTGCTTTCATCTCCC 60.340 52.381 0.00 0.00 39.88 4.30
328 329 0.700564 AGCCTTGCTTTCATCTCCCA 59.299 50.000 0.00 0.00 33.89 4.37
329 330 0.813821 GCCTTGCTTTCATCTCCCAC 59.186 55.000 0.00 0.00 0.00 4.61
330 331 1.089920 CCTTGCTTTCATCTCCCACG 58.910 55.000 0.00 0.00 0.00 4.94
331 332 1.089920 CTTGCTTTCATCTCCCACGG 58.910 55.000 0.00 0.00 0.00 4.94
332 333 0.400213 TTGCTTTCATCTCCCACGGT 59.600 50.000 0.00 0.00 0.00 4.83
333 334 1.271856 TGCTTTCATCTCCCACGGTA 58.728 50.000 0.00 0.00 0.00 4.02
334 335 1.626321 TGCTTTCATCTCCCACGGTAA 59.374 47.619 0.00 0.00 0.00 2.85
335 336 2.238646 TGCTTTCATCTCCCACGGTAAT 59.761 45.455 0.00 0.00 0.00 1.89
336 337 3.279434 GCTTTCATCTCCCACGGTAATT 58.721 45.455 0.00 0.00 0.00 1.40
337 338 3.694566 GCTTTCATCTCCCACGGTAATTT 59.305 43.478 0.00 0.00 0.00 1.82
338 339 4.201920 GCTTTCATCTCCCACGGTAATTTC 60.202 45.833 0.00 0.00 0.00 2.17
339 340 3.553828 TCATCTCCCACGGTAATTTCC 57.446 47.619 0.00 0.00 0.00 3.13
340 341 3.112263 TCATCTCCCACGGTAATTTCCT 58.888 45.455 0.00 0.00 0.00 3.36
341 342 3.521937 TCATCTCCCACGGTAATTTCCTT 59.478 43.478 0.00 0.00 0.00 3.36
342 343 3.343941 TCTCCCACGGTAATTTCCTTG 57.656 47.619 1.09 1.09 0.00 3.61
343 344 2.640826 TCTCCCACGGTAATTTCCTTGT 59.359 45.455 6.81 0.00 0.00 3.16
344 345 3.839490 TCTCCCACGGTAATTTCCTTGTA 59.161 43.478 6.81 0.00 0.00 2.41
345 346 4.286549 TCTCCCACGGTAATTTCCTTGTAA 59.713 41.667 6.81 0.00 0.00 2.41
346 347 4.325972 TCCCACGGTAATTTCCTTGTAAC 58.674 43.478 6.81 0.00 0.00 2.50
347 348 4.041938 TCCCACGGTAATTTCCTTGTAACT 59.958 41.667 6.81 0.00 0.00 2.24
348 349 4.763279 CCCACGGTAATTTCCTTGTAACTT 59.237 41.667 6.81 0.00 0.00 2.66
349 350 5.242171 CCCACGGTAATTTCCTTGTAACTTT 59.758 40.000 6.81 0.00 0.00 2.66
350 351 6.146898 CCACGGTAATTTCCTTGTAACTTTG 58.853 40.000 6.81 0.00 0.00 2.77
351 352 6.016943 CCACGGTAATTTCCTTGTAACTTTGA 60.017 38.462 6.81 0.00 0.00 2.69
352 353 7.419204 CACGGTAATTTCCTTGTAACTTTGAA 58.581 34.615 0.00 0.00 0.00 2.69
353 354 8.079809 CACGGTAATTTCCTTGTAACTTTGAAT 58.920 33.333 0.00 0.00 0.00 2.57
354 355 8.635328 ACGGTAATTTCCTTGTAACTTTGAATT 58.365 29.630 0.00 0.00 0.00 2.17
355 356 9.471084 CGGTAATTTCCTTGTAACTTTGAATTT 57.529 29.630 0.00 0.00 0.00 1.82
360 361 9.981114 ATTTCCTTGTAACTTTGAATTTAGTGG 57.019 29.630 0.00 0.00 0.00 4.00
361 362 8.528044 TTCCTTGTAACTTTGAATTTAGTGGT 57.472 30.769 0.00 0.00 0.00 4.16
362 363 7.936584 TCCTTGTAACTTTGAATTTAGTGGTG 58.063 34.615 0.00 0.00 0.00 4.17
363 364 7.776030 TCCTTGTAACTTTGAATTTAGTGGTGA 59.224 33.333 0.00 0.00 0.00 4.02
364 365 8.576442 CCTTGTAACTTTGAATTTAGTGGTGAT 58.424 33.333 0.00 0.00 0.00 3.06
365 366 9.965824 CTTGTAACTTTGAATTTAGTGGTGATT 57.034 29.630 0.00 0.00 0.00 2.57
368 369 9.556030 GTAACTTTGAATTTAGTGGTGATTAGC 57.444 33.333 0.00 0.00 0.00 3.09
369 370 7.158099 ACTTTGAATTTAGTGGTGATTAGCC 57.842 36.000 0.00 0.00 0.00 3.93
370 371 6.152831 ACTTTGAATTTAGTGGTGATTAGCCC 59.847 38.462 0.00 0.00 0.00 5.19
371 372 4.196193 TGAATTTAGTGGTGATTAGCCCG 58.804 43.478 0.00 0.00 0.00 6.13
372 373 3.926058 ATTTAGTGGTGATTAGCCCGT 57.074 42.857 0.00 0.00 0.00 5.28
373 374 5.104859 TGAATTTAGTGGTGATTAGCCCGTA 60.105 40.000 0.00 0.00 0.00 4.02
374 375 4.395959 TTTAGTGGTGATTAGCCCGTAG 57.604 45.455 0.00 0.00 0.00 3.51
391 392 3.841643 CGTAGGAAATTGGTCTGTACGT 58.158 45.455 0.00 0.00 31.45 3.57
392 393 4.240096 CGTAGGAAATTGGTCTGTACGTT 58.760 43.478 0.00 0.00 31.45 3.99
393 394 4.687483 CGTAGGAAATTGGTCTGTACGTTT 59.313 41.667 0.00 0.00 31.45 3.60
394 395 5.863397 CGTAGGAAATTGGTCTGTACGTTTA 59.137 40.000 0.00 0.00 31.45 2.01
395 396 6.365789 CGTAGGAAATTGGTCTGTACGTTTAA 59.634 38.462 0.00 0.00 31.45 1.52
396 397 7.095691 CGTAGGAAATTGGTCTGTACGTTTAAA 60.096 37.037 0.00 0.00 31.45 1.52
397 398 7.198306 AGGAAATTGGTCTGTACGTTTAAAG 57.802 36.000 0.00 0.00 0.00 1.85
398 399 6.769341 AGGAAATTGGTCTGTACGTTTAAAGT 59.231 34.615 0.00 0.00 0.00 2.66
399 400 7.283807 AGGAAATTGGTCTGTACGTTTAAAGTT 59.716 33.333 0.00 0.00 0.00 2.66
400 401 7.916977 GGAAATTGGTCTGTACGTTTAAAGTTT 59.083 33.333 0.00 0.00 0.00 2.66
401 402 8.845942 AAATTGGTCTGTACGTTTAAAGTTTC 57.154 30.769 0.00 0.00 0.00 2.78
402 403 7.797038 ATTGGTCTGTACGTTTAAAGTTTCT 57.203 32.000 0.00 0.00 0.00 2.52
403 404 8.891671 ATTGGTCTGTACGTTTAAAGTTTCTA 57.108 30.769 0.00 0.00 0.00 2.10
404 405 7.698836 TGGTCTGTACGTTTAAAGTTTCTAC 57.301 36.000 0.00 0.00 0.00 2.59
405 406 7.491682 TGGTCTGTACGTTTAAAGTTTCTACT 58.508 34.615 0.00 0.00 35.68 2.57
406 407 8.629158 TGGTCTGTACGTTTAAAGTTTCTACTA 58.371 33.333 0.00 0.00 33.17 1.82
407 408 9.631452 GGTCTGTACGTTTAAAGTTTCTACTAT 57.369 33.333 0.00 0.00 33.17 2.12
421 422 9.793259 AAGTTTCTACTATTTGTCAATTGGAGA 57.207 29.630 5.42 0.00 34.38 3.71
422 423 9.965902 AGTTTCTACTATTTGTCAATTGGAGAT 57.034 29.630 5.42 0.00 35.68 2.75
423 424 9.994432 GTTTCTACTATTTGTCAATTGGAGATG 57.006 33.333 5.42 0.00 35.68 2.90
424 425 9.958180 TTTCTACTATTTGTCAATTGGAGATGA 57.042 29.630 5.42 0.00 35.68 2.92
426 427 9.551734 TCTACTATTTGTCAATTGGAGATGATG 57.448 33.333 5.42 0.00 32.07 3.07
427 428 7.035840 ACTATTTGTCAATTGGAGATGATGC 57.964 36.000 5.42 0.00 0.00 3.91
428 429 5.925506 ATTTGTCAATTGGAGATGATGCA 57.074 34.783 5.42 0.00 0.00 3.96
429 430 4.707030 TTGTCAATTGGAGATGATGCAC 57.293 40.909 5.42 0.00 0.00 4.57
430 431 3.018856 TGTCAATTGGAGATGATGCACC 58.981 45.455 5.42 0.00 0.00 5.01
431 432 2.032550 GTCAATTGGAGATGATGCACCG 59.967 50.000 5.42 0.00 0.00 4.94
432 433 1.027357 AATTGGAGATGATGCACCGC 58.973 50.000 0.00 0.00 0.00 5.68
471 472 2.329379 GTTTGGTCTGCTCGTAGACTG 58.671 52.381 13.49 0.10 45.03 3.51
472 473 0.243907 TTGGTCTGCTCGTAGACTGC 59.756 55.000 13.49 1.05 45.03 4.40
473 474 0.893727 TGGTCTGCTCGTAGACTGCA 60.894 55.000 13.49 3.34 45.03 4.41
475 476 0.241213 GTCTGCTCGTAGACTGCACA 59.759 55.000 7.74 0.00 42.93 4.57
476 477 1.135257 GTCTGCTCGTAGACTGCACAT 60.135 52.381 7.74 0.00 42.93 3.21
483 492 1.404717 CGTAGACTGCACATTCAGCCT 60.405 52.381 0.00 0.00 37.59 4.58
484 493 2.005451 GTAGACTGCACATTCAGCCTG 58.995 52.381 0.00 0.00 37.59 4.85
486 495 2.249557 GACTGCACATTCAGCCTGCG 62.250 60.000 0.00 0.00 37.59 5.18
488 497 1.579964 CTGCACATTCAGCCTGCGAA 61.580 55.000 0.00 0.41 33.35 4.70
489 498 1.154150 GCACATTCAGCCTGCGAAC 60.154 57.895 0.00 0.00 0.00 3.95
492 501 1.394917 CACATTCAGCCTGCGAACTAC 59.605 52.381 0.00 0.00 0.00 2.73
494 503 1.662629 CATTCAGCCTGCGAACTACAG 59.337 52.381 0.00 0.00 34.82 2.74
495 504 0.679505 TTCAGCCTGCGAACTACAGT 59.320 50.000 0.00 0.00 33.09 3.55
498 507 2.297880 TCAGCCTGCGAACTACAGTAAA 59.702 45.455 0.00 0.00 33.09 2.01
500 509 2.561419 AGCCTGCGAACTACAGTAAAGA 59.439 45.455 0.00 0.00 33.09 2.52
501 510 2.666994 GCCTGCGAACTACAGTAAAGAC 59.333 50.000 0.00 0.00 33.09 3.01
503 512 4.557205 CCTGCGAACTACAGTAAAGACTT 58.443 43.478 0.00 0.00 31.73 3.01
505 514 5.465724 CCTGCGAACTACAGTAAAGACTTTT 59.534 40.000 5.61 0.00 31.73 2.27
508 517 6.127403 GCGAACTACAGTAAAGACTTTTGTG 58.873 40.000 13.27 10.29 31.73 3.33
509 518 6.127403 CGAACTACAGTAAAGACTTTTGTGC 58.873 40.000 13.27 1.12 31.73 4.57
513 522 7.639945 ACTACAGTAAAGACTTTTGTGCATTC 58.360 34.615 13.27 0.00 31.73 2.67
516 525 6.095440 ACAGTAAAGACTTTTGTGCATTCAGT 59.905 34.615 5.61 0.00 31.73 3.41
517 526 6.634436 CAGTAAAGACTTTTGTGCATTCAGTC 59.366 38.462 5.61 9.22 31.73 3.51
518 527 4.574599 AAGACTTTTGTGCATTCAGTCC 57.425 40.909 12.24 0.00 0.00 3.85
519 528 2.549754 AGACTTTTGTGCATTCAGTCCG 59.450 45.455 12.24 0.00 0.00 4.79
521 530 0.313672 TTTTGTGCATTCAGTCCGGC 59.686 50.000 0.00 0.00 0.00 6.13
523 532 0.323302 TTGTGCATTCAGTCCGGCTA 59.677 50.000 0.00 0.00 0.00 3.93
526 535 2.169561 TGTGCATTCAGTCCGGCTAATA 59.830 45.455 0.00 0.00 0.00 0.98
527 536 3.202906 GTGCATTCAGTCCGGCTAATAA 58.797 45.455 0.00 0.00 0.00 1.40
528 537 3.002348 GTGCATTCAGTCCGGCTAATAAC 59.998 47.826 0.00 0.00 0.00 1.89
530 539 3.713288 CATTCAGTCCGGCTAATAACGA 58.287 45.455 0.00 0.00 0.00 3.85
531 540 3.431922 TTCAGTCCGGCTAATAACGAG 57.568 47.619 0.00 0.00 0.00 4.18
532 541 2.646930 TCAGTCCGGCTAATAACGAGA 58.353 47.619 0.00 0.00 0.00 4.04
534 543 3.066342 TCAGTCCGGCTAATAACGAGAAG 59.934 47.826 0.00 0.00 0.00 2.85
536 545 4.036027 CAGTCCGGCTAATAACGAGAAGTA 59.964 45.833 0.00 0.00 0.00 2.24
537 546 4.826183 AGTCCGGCTAATAACGAGAAGTAT 59.174 41.667 0.00 0.00 0.00 2.12
538 547 5.048852 AGTCCGGCTAATAACGAGAAGTATC 60.049 44.000 0.00 0.00 0.00 2.24
539 548 5.048852 GTCCGGCTAATAACGAGAAGTATCT 60.049 44.000 0.00 0.00 39.10 1.98
554 563 5.894298 AAGTATCTCATGCATACTTCCCA 57.106 39.130 17.73 0.00 41.31 4.37
555 564 5.480642 AGTATCTCATGCATACTTCCCAG 57.519 43.478 0.00 0.00 33.99 4.45
556 565 3.784511 ATCTCATGCATACTTCCCAGG 57.215 47.619 0.00 0.00 0.00 4.45
557 566 1.770658 TCTCATGCATACTTCCCAGGG 59.229 52.381 0.00 0.00 0.00 4.45
558 567 1.770658 CTCATGCATACTTCCCAGGGA 59.229 52.381 3.01 3.01 0.00 4.20
559 568 1.770658 TCATGCATACTTCCCAGGGAG 59.229 52.381 8.67 5.85 31.21 4.30
560 569 1.492176 CATGCATACTTCCCAGGGAGT 59.508 52.381 8.67 11.62 31.21 3.85
570 579 3.797331 CAGGGAGTGGACTGAGCA 58.203 61.111 0.00 0.00 36.86 4.26
571 580 2.294890 CAGGGAGTGGACTGAGCAT 58.705 57.895 0.00 0.00 36.86 3.79
572 581 1.489481 CAGGGAGTGGACTGAGCATA 58.511 55.000 0.00 0.00 36.86 3.14
573 582 1.833630 CAGGGAGTGGACTGAGCATAA 59.166 52.381 0.00 0.00 36.86 1.90
575 584 1.834263 GGGAGTGGACTGAGCATAAGT 59.166 52.381 0.00 0.00 0.00 2.24
576 585 3.031736 GGGAGTGGACTGAGCATAAGTA 58.968 50.000 0.00 0.00 0.00 2.24
577 586 3.181474 GGGAGTGGACTGAGCATAAGTAC 60.181 52.174 0.00 0.00 0.00 2.73
578 587 3.447586 GGAGTGGACTGAGCATAAGTACA 59.552 47.826 0.00 0.00 0.00 2.90
579 588 4.100189 GGAGTGGACTGAGCATAAGTACAT 59.900 45.833 2.16 0.00 0.00 2.29
580 589 5.395768 GGAGTGGACTGAGCATAAGTACATT 60.396 44.000 2.16 0.00 0.00 2.71
582 591 7.182817 AGTGGACTGAGCATAAGTACATTTA 57.817 36.000 2.16 0.00 0.00 1.40
583 592 7.796054 AGTGGACTGAGCATAAGTACATTTAT 58.204 34.615 2.16 0.00 0.00 1.40
584 593 8.267894 AGTGGACTGAGCATAAGTACATTTATT 58.732 33.333 2.16 0.00 0.00 1.40
586 595 9.461312 TGGACTGAGCATAAGTACATTTATTTT 57.539 29.630 0.00 0.00 0.00 1.82
598 607 7.712797 AGTACATTTATTTTATTTCGGGCAGG 58.287 34.615 0.00 0.00 0.00 4.85
599 608 5.912892 ACATTTATTTTATTTCGGGCAGGG 58.087 37.500 0.00 0.00 0.00 4.45
600 609 4.394439 TTTATTTTATTTCGGGCAGGGC 57.606 40.909 0.00 0.00 0.00 5.19
602 611 1.316706 TTTTATTTCGGGCAGGGCGG 61.317 55.000 0.00 0.00 0.00 6.13
603 612 3.707640 TTATTTCGGGCAGGGCGGG 62.708 63.158 0.78 0.00 0.00 6.13
616 625 3.361977 GCGGGTCATGGCACGTTT 61.362 61.111 24.73 0.00 37.63 3.60
617 626 2.914908 GCGGGTCATGGCACGTTTT 61.915 57.895 24.73 0.00 37.63 2.43
618 627 1.657556 CGGGTCATGGCACGTTTTT 59.342 52.632 15.25 0.00 0.00 1.94
619 628 0.662970 CGGGTCATGGCACGTTTTTG 60.663 55.000 15.25 0.00 0.00 2.44
620 629 0.943835 GGGTCATGGCACGTTTTTGC 60.944 55.000 0.00 0.00 42.18 3.68
626 635 4.215330 GCACGTTTTTGCCCGTAC 57.785 55.556 0.00 0.00 36.42 3.67
627 636 1.370778 GCACGTTTTTGCCCGTACC 60.371 57.895 0.00 0.00 36.42 3.34
628 637 1.788067 GCACGTTTTTGCCCGTACCT 61.788 55.000 0.00 0.00 36.42 3.08
629 638 0.664224 CACGTTTTTGCCCGTACCTT 59.336 50.000 0.00 0.00 35.16 3.50
630 639 0.946528 ACGTTTTTGCCCGTACCTTC 59.053 50.000 0.00 0.00 35.16 3.46
631 640 0.110554 CGTTTTTGCCCGTACCTTCG 60.111 55.000 0.00 0.00 0.00 3.79
632 641 0.946528 GTTTTTGCCCGTACCTTCGT 59.053 50.000 0.00 0.00 0.00 3.85
633 642 1.069703 GTTTTTGCCCGTACCTTCGTC 60.070 52.381 0.00 0.00 0.00 4.20
634 643 0.393820 TTTTGCCCGTACCTTCGTCT 59.606 50.000 0.00 0.00 0.00 4.18
635 644 0.320073 TTTGCCCGTACCTTCGTCTG 60.320 55.000 0.00 0.00 0.00 3.51
636 645 1.466025 TTGCCCGTACCTTCGTCTGT 61.466 55.000 0.00 0.00 0.00 3.41
637 646 1.445582 GCCCGTACCTTCGTCTGTG 60.446 63.158 0.00 0.00 0.00 3.66
638 647 1.962144 CCCGTACCTTCGTCTGTGT 59.038 57.895 0.00 0.00 0.00 3.72
639 648 0.316204 CCCGTACCTTCGTCTGTGTT 59.684 55.000 0.00 0.00 0.00 3.32
640 649 1.668047 CCCGTACCTTCGTCTGTGTTC 60.668 57.143 0.00 0.00 0.00 3.18
641 650 1.668047 CCGTACCTTCGTCTGTGTTCC 60.668 57.143 0.00 0.00 0.00 3.62
642 651 1.268899 CGTACCTTCGTCTGTGTTCCT 59.731 52.381 0.00 0.00 0.00 3.36
643 652 2.667724 CGTACCTTCGTCTGTGTTCCTC 60.668 54.545 0.00 0.00 0.00 3.71
644 653 1.705873 ACCTTCGTCTGTGTTCCTCT 58.294 50.000 0.00 0.00 0.00 3.69
645 654 2.040178 ACCTTCGTCTGTGTTCCTCTT 58.960 47.619 0.00 0.00 0.00 2.85
646 655 2.036089 ACCTTCGTCTGTGTTCCTCTTC 59.964 50.000 0.00 0.00 0.00 2.87
647 656 2.297597 CCTTCGTCTGTGTTCCTCTTCT 59.702 50.000 0.00 0.00 0.00 2.85
648 657 3.570559 CTTCGTCTGTGTTCCTCTTCTC 58.429 50.000 0.00 0.00 0.00 2.87
649 658 2.865079 TCGTCTGTGTTCCTCTTCTCT 58.135 47.619 0.00 0.00 0.00 3.10
650 659 4.017177 TCGTCTGTGTTCCTCTTCTCTA 57.983 45.455 0.00 0.00 0.00 2.43
651 660 3.752222 TCGTCTGTGTTCCTCTTCTCTAC 59.248 47.826 0.00 0.00 0.00 2.59
652 661 3.754323 CGTCTGTGTTCCTCTTCTCTACT 59.246 47.826 0.00 0.00 0.00 2.57
653 662 4.216687 CGTCTGTGTTCCTCTTCTCTACTT 59.783 45.833 0.00 0.00 0.00 2.24
654 663 5.278561 CGTCTGTGTTCCTCTTCTCTACTTT 60.279 44.000 0.00 0.00 0.00 2.66
655 664 6.153756 GTCTGTGTTCCTCTTCTCTACTTTC 58.846 44.000 0.00 0.00 0.00 2.62
656 665 6.015772 GTCTGTGTTCCTCTTCTCTACTTTCT 60.016 42.308 0.00 0.00 0.00 2.52
657 666 6.551601 TCTGTGTTCCTCTTCTCTACTTTCTT 59.448 38.462 0.00 0.00 0.00 2.52
658 667 6.750148 TGTGTTCCTCTTCTCTACTTTCTTC 58.250 40.000 0.00 0.00 0.00 2.87
659 668 6.160684 GTGTTCCTCTTCTCTACTTTCTTCC 58.839 44.000 0.00 0.00 0.00 3.46
660 669 5.839063 TGTTCCTCTTCTCTACTTTCTTCCA 59.161 40.000 0.00 0.00 0.00 3.53
661 670 5.986501 TCCTCTTCTCTACTTTCTTCCAC 57.013 43.478 0.00 0.00 0.00 4.02
662 671 4.459685 TCCTCTTCTCTACTTTCTTCCACG 59.540 45.833 0.00 0.00 0.00 4.94
663 672 4.459685 CCTCTTCTCTACTTTCTTCCACGA 59.540 45.833 0.00 0.00 0.00 4.35
664 673 5.126384 CCTCTTCTCTACTTTCTTCCACGAT 59.874 44.000 0.00 0.00 0.00 3.73
665 674 6.319152 CCTCTTCTCTACTTTCTTCCACGATA 59.681 42.308 0.00 0.00 0.00 2.92
666 675 7.148052 CCTCTTCTCTACTTTCTTCCACGATAA 60.148 40.741 0.00 0.00 0.00 1.75
667 676 8.118976 TCTTCTCTACTTTCTTCCACGATAAA 57.881 34.615 0.00 0.00 0.00 1.40
668 677 8.027771 TCTTCTCTACTTTCTTCCACGATAAAC 58.972 37.037 0.00 0.00 0.00 2.01
675 684 7.565680 ACTTTCTTCCACGATAAACCTCATAT 58.434 34.615 0.00 0.00 0.00 1.78
700 709 5.615581 CGTAAATTCGGCAGAACATTATTCG 59.384 40.000 0.00 2.83 39.48 3.34
711 720 5.735892 CAGAACATTATTCGTCACAATGCTG 59.264 40.000 0.00 0.00 33.82 4.41
715 724 6.542852 ACATTATTCGTCACAATGCTGTTAC 58.457 36.000 0.00 0.00 33.82 2.50
720 729 2.286563 CGTCACAATGCTGTTACACACA 59.713 45.455 0.00 0.00 31.64 3.72
924 938 1.453155 CTCGTTGCTATGCCCAAAGT 58.547 50.000 0.00 0.00 0.00 2.66
927 941 2.027561 TCGTTGCTATGCCCAAAGTACT 60.028 45.455 0.00 0.00 0.00 2.73
928 942 3.196039 TCGTTGCTATGCCCAAAGTACTA 59.804 43.478 0.00 0.00 0.00 1.82
1020 1041 2.284754 TGGCAACCAGTCAAAGCATA 57.715 45.000 0.00 0.00 0.00 3.14
1037 1058 2.349886 GCATAGCACCTTCGTTCTTCAG 59.650 50.000 0.00 0.00 0.00 3.02
1404 1434 2.272678 GAGCTCCTCGGAAAAGCTAAC 58.727 52.381 12.29 0.69 46.01 2.34
1410 1440 1.509162 CGGAAAAGCTAACGCGCAC 60.509 57.895 5.73 0.00 42.32 5.34
1419 1449 3.599285 TAACGCGCACCTGAAGGGG 62.599 63.158 5.73 0.00 43.01 4.79
1452 1482 1.062206 CGCCTTCGTCTACGTCCTC 59.938 63.158 0.00 0.00 40.80 3.71
1509 1545 3.585862 GGCACTTCTCGTTGTTCTCATA 58.414 45.455 0.00 0.00 0.00 2.15
1717 1756 1.372004 CTGTTCGTCGCCGTTACCA 60.372 57.895 0.00 0.00 35.01 3.25
1723 1762 3.307906 TCGCCGTTACCAGTGCCT 61.308 61.111 0.00 0.00 0.00 4.75
1742 1781 3.845259 GGCCACCGTCCTATCGCA 61.845 66.667 0.00 0.00 0.00 5.10
1743 1782 2.185867 GCCACCGTCCTATCGCAA 59.814 61.111 0.00 0.00 0.00 4.85
1767 1806 3.749064 ACGCTCGCGAGGACATGT 61.749 61.111 35.10 12.44 42.83 3.21
1785 1827 4.137872 GCGGGTAGTAGCGTGGCA 62.138 66.667 4.44 0.00 0.00 4.92
1851 1893 2.244651 GCAGTTGTTCGCCGTCTGT 61.245 57.895 0.00 0.00 0.00 3.41
1894 1936 1.874019 CGCAGGGAGAACATCGACG 60.874 63.158 0.00 0.00 0.00 5.12
1913 1955 2.378634 GCCAGCTGGGGGATACTGT 61.379 63.158 33.46 0.00 37.04 3.55
1970 2015 5.482163 TGATCATTCTACTTGTCACACCA 57.518 39.130 0.00 0.00 0.00 4.17
1972 2017 6.295249 TGATCATTCTACTTGTCACACCAAA 58.705 36.000 0.00 0.00 0.00 3.28
1996 2043 6.716934 TGGTTGGCTGTAATTTTTACTTCA 57.283 33.333 0.00 0.00 0.00 3.02
2002 2049 9.853555 TTGGCTGTAATTTTTACTTCATGTATG 57.146 29.630 0.00 0.00 0.00 2.39
2016 2063 8.932945 ACTTCATGTATGTTAGACTATGTGTG 57.067 34.615 0.00 0.00 0.00 3.82
2018 2065 8.702163 TTCATGTATGTTAGACTATGTGTGTG 57.298 34.615 0.00 0.00 0.00 3.82
2020 2067 7.759433 TCATGTATGTTAGACTATGTGTGTGTG 59.241 37.037 0.00 0.00 0.00 3.82
2021 2068 6.988522 TGTATGTTAGACTATGTGTGTGTGT 58.011 36.000 0.00 0.00 0.00 3.72
2022 2069 6.866248 TGTATGTTAGACTATGTGTGTGTGTG 59.134 38.462 0.00 0.00 0.00 3.82
2023 2070 5.270893 TGTTAGACTATGTGTGTGTGTGT 57.729 39.130 0.00 0.00 0.00 3.72
2024 2071 5.047188 TGTTAGACTATGTGTGTGTGTGTG 58.953 41.667 0.00 0.00 0.00 3.82
2025 2072 3.819564 AGACTATGTGTGTGTGTGTGT 57.180 42.857 0.00 0.00 0.00 3.72
2026 2073 3.457234 AGACTATGTGTGTGTGTGTGTG 58.543 45.455 0.00 0.00 0.00 3.82
2027 2074 3.118775 AGACTATGTGTGTGTGTGTGTGT 60.119 43.478 0.00 0.00 0.00 3.72
2028 2075 2.935849 ACTATGTGTGTGTGTGTGTGTG 59.064 45.455 0.00 0.00 0.00 3.82
2031 2078 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
2049 2096 3.019564 GTTTGGAATGCATGCTCCTACT 58.980 45.455 22.52 1.28 32.51 2.57
2095 2142 0.388778 TGCGCTCGTTCGTTGGATTA 60.389 50.000 9.73 0.00 0.00 1.75
2108 2155 3.252215 CGTTGGATTAAGCACACTTTCCA 59.748 43.478 0.00 0.00 39.83 3.53
2139 2186 3.365472 ACAAAAGCACCTGGTCTTCTTT 58.635 40.909 0.00 4.48 0.00 2.52
2171 2220 1.072505 GGAAAGCGTCAGGTCCCAA 59.927 57.895 0.00 0.00 0.00 4.12
2173 2222 1.578206 GAAAGCGTCAGGTCCCAAGC 61.578 60.000 0.00 0.00 0.00 4.01
2191 2260 4.537015 CAAGCGCTTACATTTATTAGGGC 58.463 43.478 24.55 0.00 44.16 5.19
2193 2264 2.803956 GCGCTTACATTTATTAGGGCGA 59.196 45.455 0.00 0.00 43.25 5.54
2195 2266 4.435651 GCGCTTACATTTATTAGGGCGATC 60.436 45.833 0.00 0.00 43.25 3.69
2200 2271 7.918562 GCTTACATTTATTAGGGCGATCAAAAA 59.081 33.333 0.00 0.00 0.00 1.94
2250 2322 8.450964 TCAAGTATCAAAATTCAGATCCGTTTC 58.549 33.333 0.00 0.00 0.00 2.78
2310 2383 6.678568 AGATCCCATATGAGTAGGTTTCAG 57.321 41.667 3.65 0.00 0.00 3.02
2412 2489 9.438228 CCTAGTATGACTATCTATCAACGAAGA 57.562 37.037 0.00 0.00 29.08 2.87
2443 2520 4.553330 AGTTGGTTACCATGACTACCAG 57.447 45.455 4.38 0.00 41.35 4.00
2551 2633 6.155393 CCTCTCTAGACACTTTTAACCATCCT 59.845 42.308 0.00 0.00 0.00 3.24
2656 2738 2.409870 GGCGTCCATTGCTCCCTTG 61.410 63.158 0.00 0.00 0.00 3.61
2762 2846 4.284490 AGAGTCTGCACTACAAATGGAGAA 59.716 41.667 0.00 0.00 44.83 2.87
2775 2859 1.344065 TGGAGAAGCTAACCCAACGA 58.656 50.000 0.00 0.00 0.00 3.85
2796 2880 0.599558 CAACCTCCGACCGTTGTCTA 59.400 55.000 0.00 0.00 39.47 2.59
2872 2956 3.368531 GCGTAAAGGAGGAGACATTGTCT 60.369 47.826 19.05 19.05 46.42 3.41
2899 2983 3.317711 TGCACCAACCATTTCTGTTGTAG 59.682 43.478 0.00 0.00 41.13 2.74
2900 2984 3.305335 GCACCAACCATTTCTGTTGTAGG 60.305 47.826 0.00 0.00 41.13 3.18
2902 2986 4.216257 CACCAACCATTTCTGTTGTAGGAG 59.784 45.833 0.00 0.00 41.13 3.69
2903 2987 4.104102 ACCAACCATTTCTGTTGTAGGAGA 59.896 41.667 0.00 0.00 41.13 3.71
2904 2988 5.222130 ACCAACCATTTCTGTTGTAGGAGAT 60.222 40.000 0.00 0.00 41.13 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.228094 TTGGCTCGCCATGTTGACA 60.228 52.632 12.00 0.00 46.64 3.58
2 3 1.210155 GTTGGCTCGCCATGTTGAC 59.790 57.895 12.00 2.66 46.64 3.18
3 4 1.228094 TGTTGGCTCGCCATGTTGA 60.228 52.632 12.00 0.00 46.64 3.18
4 5 1.081242 GTGTTGGCTCGCCATGTTG 60.081 57.895 12.00 0.00 46.64 3.33
5 6 2.268076 GGTGTTGGCTCGCCATGTT 61.268 57.895 12.00 0.00 46.64 2.71
6 7 2.672996 GGTGTTGGCTCGCCATGT 60.673 61.111 12.00 0.00 46.64 3.21
7 8 2.203972 CTTGGTGTTGGCTCGCCATG 62.204 60.000 12.00 12.71 46.64 3.66
8 9 1.973281 CTTGGTGTTGGCTCGCCAT 60.973 57.895 12.00 0.00 46.64 4.40
9 10 2.594303 CTTGGTGTTGGCTCGCCA 60.594 61.111 6.52 6.52 44.77 5.69
10 11 4.043200 GCTTGGTGTTGGCTCGCC 62.043 66.667 0.00 0.00 38.35 5.54
11 12 4.043200 GGCTTGGTGTTGGCTCGC 62.043 66.667 0.00 0.00 0.00 5.03
12 13 3.726517 CGGCTTGGTGTTGGCTCG 61.727 66.667 0.00 0.00 0.00 5.03
13 14 2.281484 TCGGCTTGGTGTTGGCTC 60.281 61.111 0.00 0.00 0.00 4.70
14 15 2.281761 CTCGGCTTGGTGTTGGCT 60.282 61.111 0.00 0.00 0.00 4.75
15 16 2.594592 ACTCGGCTTGGTGTTGGC 60.595 61.111 0.00 0.00 0.00 4.52
16 17 0.535102 AAGACTCGGCTTGGTGTTGG 60.535 55.000 0.00 0.00 0.00 3.77
17 18 0.588252 CAAGACTCGGCTTGGTGTTG 59.412 55.000 4.56 0.00 41.15 3.33
18 19 3.006672 CAAGACTCGGCTTGGTGTT 57.993 52.632 4.56 0.00 41.15 3.32
19 20 4.779475 CAAGACTCGGCTTGGTGT 57.221 55.556 4.56 0.00 41.15 4.16
23 24 3.121030 CGCCCAAGACTCGGCTTG 61.121 66.667 5.52 5.52 43.38 4.01
24 25 4.394712 CCGCCCAAGACTCGGCTT 62.395 66.667 10.83 0.00 43.38 4.35
26 27 4.388499 TTCCGCCCAAGACTCGGC 62.388 66.667 3.83 3.83 42.65 5.54
27 28 1.601419 TACTTCCGCCCAAGACTCGG 61.601 60.000 0.00 0.00 44.16 4.63
28 29 0.179134 CTACTTCCGCCCAAGACTCG 60.179 60.000 0.00 0.00 0.00 4.18
29 30 0.175989 CCTACTTCCGCCCAAGACTC 59.824 60.000 0.00 0.00 0.00 3.36
30 31 1.265454 CCCTACTTCCGCCCAAGACT 61.265 60.000 0.00 0.00 0.00 3.24
31 32 1.221021 CCCTACTTCCGCCCAAGAC 59.779 63.158 0.00 0.00 0.00 3.01
32 33 2.666098 GCCCTACTTCCGCCCAAGA 61.666 63.158 0.00 0.00 0.00 3.02
33 34 2.124695 GCCCTACTTCCGCCCAAG 60.125 66.667 0.00 0.00 0.00 3.61
34 35 2.609610 AGCCCTACTTCCGCCCAA 60.610 61.111 0.00 0.00 0.00 4.12
35 36 3.399181 CAGCCCTACTTCCGCCCA 61.399 66.667 0.00 0.00 0.00 5.36
36 37 4.176752 CCAGCCCTACTTCCGCCC 62.177 72.222 0.00 0.00 0.00 6.13
37 38 1.984288 ATTCCAGCCCTACTTCCGCC 61.984 60.000 0.00 0.00 0.00 6.13
38 39 0.107165 AATTCCAGCCCTACTTCCGC 60.107 55.000 0.00 0.00 0.00 5.54
39 40 1.806623 CGAATTCCAGCCCTACTTCCG 60.807 57.143 0.00 0.00 0.00 4.30
40 41 1.485066 TCGAATTCCAGCCCTACTTCC 59.515 52.381 0.00 0.00 0.00 3.46
41 42 2.827652 CTCGAATTCCAGCCCTACTTC 58.172 52.381 0.00 0.00 0.00 3.01
42 43 1.134371 GCTCGAATTCCAGCCCTACTT 60.134 52.381 13.51 0.00 0.00 2.24
43 44 0.466124 GCTCGAATTCCAGCCCTACT 59.534 55.000 13.51 0.00 0.00 2.57
44 45 2.993539 GCTCGAATTCCAGCCCTAC 58.006 57.895 13.51 0.00 0.00 3.18
49 50 1.148759 GACTCGGCTCGAATTCCAGC 61.149 60.000 15.86 15.86 34.74 4.85
50 51 0.867753 CGACTCGGCTCGAATTCCAG 60.868 60.000 0.00 0.00 34.74 3.86
51 52 1.138883 CGACTCGGCTCGAATTCCA 59.861 57.895 0.00 0.00 34.74 3.53
52 53 0.592754 CTCGACTCGGCTCGAATTCC 60.593 60.000 0.00 0.00 42.00 3.01
53 54 1.203600 GCTCGACTCGGCTCGAATTC 61.204 60.000 0.00 0.00 42.00 2.17
54 55 1.226717 GCTCGACTCGGCTCGAATT 60.227 57.895 0.00 0.00 42.00 2.17
55 56 2.409651 GCTCGACTCGGCTCGAAT 59.590 61.111 0.00 0.00 42.00 3.34
56 57 3.812019 GGCTCGACTCGGCTCGAA 61.812 66.667 10.47 0.00 42.00 3.71
58 59 4.116328 TTGGCTCGACTCGGCTCG 62.116 66.667 10.47 0.00 34.83 5.03
59 60 2.507324 GTTGGCTCGACTCGGCTC 60.507 66.667 10.47 3.89 0.00 4.70
60 61 2.992114 AGTTGGCTCGACTCGGCT 60.992 61.111 10.47 0.00 0.00 5.52
61 62 2.507324 GAGTTGGCTCGACTCGGC 60.507 66.667 0.00 1.17 35.52 5.54
72 73 0.605589 AGAGAGTCAAGCCGAGTTGG 59.394 55.000 0.00 0.00 42.50 3.77
73 74 2.750166 TCTAGAGAGTCAAGCCGAGTTG 59.250 50.000 0.00 0.00 0.00 3.16
74 75 3.013921 CTCTAGAGAGTCAAGCCGAGTT 58.986 50.000 15.05 0.00 37.40 3.01
75 76 2.639065 CTCTAGAGAGTCAAGCCGAGT 58.361 52.381 15.05 0.00 37.40 4.18
76 77 1.333619 GCTCTAGAGAGTCAAGCCGAG 59.666 57.143 24.24 0.00 43.85 4.63
77 78 1.065053 AGCTCTAGAGAGTCAAGCCGA 60.065 52.381 24.24 0.00 43.85 5.54
78 79 1.333619 GAGCTCTAGAGAGTCAAGCCG 59.666 57.143 24.24 0.00 43.85 5.52
79 80 1.333619 CGAGCTCTAGAGAGTCAAGCC 59.666 57.143 24.24 2.81 43.85 4.35
80 81 2.014128 ACGAGCTCTAGAGAGTCAAGC 58.986 52.381 24.24 6.86 43.85 4.01
81 82 4.695217 AAACGAGCTCTAGAGAGTCAAG 57.305 45.455 24.24 9.70 43.85 3.02
82 83 4.278669 ACAAAACGAGCTCTAGAGAGTCAA 59.721 41.667 24.24 0.00 43.85 3.18
83 84 3.821600 ACAAAACGAGCTCTAGAGAGTCA 59.178 43.478 24.24 0.00 43.85 3.41
84 85 4.428615 ACAAAACGAGCTCTAGAGAGTC 57.571 45.455 24.24 16.60 43.85 3.36
85 86 4.857509 AACAAAACGAGCTCTAGAGAGT 57.142 40.909 24.24 15.69 43.85 3.24
86 87 7.030165 TCATTAACAAAACGAGCTCTAGAGAG 58.970 38.462 24.24 15.06 44.75 3.20
87 88 6.920817 TCATTAACAAAACGAGCTCTAGAGA 58.079 36.000 24.24 0.00 0.00 3.10
88 89 6.237701 GCTCATTAACAAAACGAGCTCTAGAG 60.238 42.308 15.85 15.85 44.47 2.43
89 90 5.577164 GCTCATTAACAAAACGAGCTCTAGA 59.423 40.000 12.85 0.00 44.47 2.43
90 91 5.790547 GCTCATTAACAAAACGAGCTCTAG 58.209 41.667 12.85 0.00 44.47 2.43
91 92 5.779806 GCTCATTAACAAAACGAGCTCTA 57.220 39.130 12.85 0.00 44.47 2.43
92 93 4.670227 GCTCATTAACAAAACGAGCTCT 57.330 40.909 12.85 0.00 44.47 4.09
96 97 5.499334 CGAGCTAGCTCATTAACAAAACGAG 60.499 44.000 36.92 16.54 42.86 4.18
97 98 4.326278 CGAGCTAGCTCATTAACAAAACGA 59.674 41.667 36.92 0.00 42.86 3.85
98 99 4.326278 TCGAGCTAGCTCATTAACAAAACG 59.674 41.667 36.92 22.43 42.86 3.60
99 100 5.348997 AGTCGAGCTAGCTCATTAACAAAAC 59.651 40.000 36.92 21.13 42.86 2.43
100 101 5.479306 AGTCGAGCTAGCTCATTAACAAAA 58.521 37.500 36.92 12.80 42.86 2.44
101 102 5.073311 AGTCGAGCTAGCTCATTAACAAA 57.927 39.130 36.92 13.71 42.86 2.83
102 103 4.673441 GAGTCGAGCTAGCTCATTAACAA 58.327 43.478 36.92 14.93 42.86 2.83
103 104 3.242772 CGAGTCGAGCTAGCTCATTAACA 60.243 47.826 36.92 15.29 42.86 2.41
104 105 3.002451 TCGAGTCGAGCTAGCTCATTAAC 59.998 47.826 36.92 27.88 42.86 2.01
105 106 3.002451 GTCGAGTCGAGCTAGCTCATTAA 59.998 47.826 36.92 20.24 42.86 1.40
106 107 2.544686 GTCGAGTCGAGCTAGCTCATTA 59.455 50.000 36.92 22.51 42.86 1.90
107 108 1.332375 GTCGAGTCGAGCTAGCTCATT 59.668 52.381 36.92 24.26 42.86 2.57
108 109 0.941542 GTCGAGTCGAGCTAGCTCAT 59.058 55.000 36.92 25.04 42.86 2.90
109 110 0.108089 AGTCGAGTCGAGCTAGCTCA 60.108 55.000 36.92 24.11 42.86 4.26
110 111 0.580104 GAGTCGAGTCGAGCTAGCTC 59.420 60.000 31.12 31.12 36.23 4.09
111 112 1.149361 CGAGTCGAGTCGAGCTAGCT 61.149 60.000 33.61 19.45 42.85 3.32
112 113 1.274476 CGAGTCGAGTCGAGCTAGC 59.726 63.158 33.61 6.62 42.85 3.42
113 114 0.573521 GACGAGTCGAGTCGAGCTAG 59.426 60.000 40.68 17.40 42.85 3.42
114 115 0.108945 TGACGAGTCGAGTCGAGCTA 60.109 55.000 40.68 23.29 42.85 3.32
115 116 1.374378 TGACGAGTCGAGTCGAGCT 60.374 57.895 40.68 23.90 42.85 4.09
116 117 1.225799 GTGACGAGTCGAGTCGAGC 60.226 63.158 40.68 31.07 42.85 5.03
117 118 1.626747 TAGTGACGAGTCGAGTCGAG 58.373 55.000 40.68 19.43 42.85 4.04
118 119 2.290531 ATAGTGACGAGTCGAGTCGA 57.709 50.000 40.68 23.28 42.85 4.20
119 120 3.598893 CGTTATAGTGACGAGTCGAGTCG 60.599 52.174 34.64 34.64 45.76 4.18
120 121 3.549471 TCGTTATAGTGACGAGTCGAGTC 59.451 47.826 21.50 10.37 43.79 3.36
121 122 3.515630 TCGTTATAGTGACGAGTCGAGT 58.484 45.455 21.50 2.92 43.79 4.18
128 129 3.688185 ACTTGAGCTCGTTATAGTGACGA 59.312 43.478 9.64 0.00 46.15 4.20
129 130 4.017380 ACTTGAGCTCGTTATAGTGACG 57.983 45.455 9.64 0.00 41.62 4.35
130 131 5.399858 TGAACTTGAGCTCGTTATAGTGAC 58.600 41.667 9.64 6.34 0.00 3.67
131 132 5.638596 TGAACTTGAGCTCGTTATAGTGA 57.361 39.130 9.64 0.00 0.00 3.41
132 133 5.633601 TGTTGAACTTGAGCTCGTTATAGTG 59.366 40.000 9.64 0.00 0.00 2.74
133 134 5.779922 TGTTGAACTTGAGCTCGTTATAGT 58.220 37.500 9.64 4.50 0.00 2.12
134 135 6.893958 ATGTTGAACTTGAGCTCGTTATAG 57.106 37.500 9.64 3.88 0.00 1.31
135 136 6.092122 CCAATGTTGAACTTGAGCTCGTTATA 59.908 38.462 9.64 0.00 0.00 0.98
136 137 5.106555 CCAATGTTGAACTTGAGCTCGTTAT 60.107 40.000 9.64 0.00 0.00 1.89
137 138 4.213270 CCAATGTTGAACTTGAGCTCGTTA 59.787 41.667 9.64 0.00 0.00 3.18
138 139 3.003689 CCAATGTTGAACTTGAGCTCGTT 59.996 43.478 9.64 8.00 0.00 3.85
139 140 2.549754 CCAATGTTGAACTTGAGCTCGT 59.450 45.455 9.64 0.00 0.00 4.18
140 141 2.666619 GCCAATGTTGAACTTGAGCTCG 60.667 50.000 9.64 0.00 0.00 5.03
141 142 2.555757 AGCCAATGTTGAACTTGAGCTC 59.444 45.455 6.82 6.82 28.99 4.09
142 143 2.555757 GAGCCAATGTTGAACTTGAGCT 59.444 45.455 15.54 15.54 34.08 4.09
143 144 2.666619 CGAGCCAATGTTGAACTTGAGC 60.667 50.000 0.00 5.27 0.00 4.26
144 145 2.807967 TCGAGCCAATGTTGAACTTGAG 59.192 45.455 0.00 0.00 0.00 3.02
145 146 2.548057 GTCGAGCCAATGTTGAACTTGA 59.452 45.455 0.00 0.00 0.00 3.02
146 147 2.549754 AGTCGAGCCAATGTTGAACTTG 59.450 45.455 0.00 0.00 0.00 3.16
147 148 2.808543 GAGTCGAGCCAATGTTGAACTT 59.191 45.455 0.00 0.00 0.00 2.66
148 149 2.417719 GAGTCGAGCCAATGTTGAACT 58.582 47.619 0.00 0.00 0.00 3.01
149 150 1.126846 CGAGTCGAGCCAATGTTGAAC 59.873 52.381 6.73 0.00 0.00 3.18
150 151 1.270094 ACGAGTCGAGCCAATGTTGAA 60.270 47.619 21.50 0.00 0.00 2.69
151 152 0.317160 ACGAGTCGAGCCAATGTTGA 59.683 50.000 21.50 0.00 0.00 3.18
152 153 1.990799 TACGAGTCGAGCCAATGTTG 58.009 50.000 21.50 0.00 0.00 3.33
153 154 2.961526 ATACGAGTCGAGCCAATGTT 57.038 45.000 21.50 0.00 0.00 2.71
154 155 3.380637 AGTTATACGAGTCGAGCCAATGT 59.619 43.478 21.50 0.00 0.00 2.71
155 156 3.966154 AGTTATACGAGTCGAGCCAATG 58.034 45.455 21.50 0.00 0.00 2.82
156 157 3.303857 CGAGTTATACGAGTCGAGCCAAT 60.304 47.826 21.50 6.90 43.39 3.16
157 158 2.031314 CGAGTTATACGAGTCGAGCCAA 59.969 50.000 21.50 4.61 43.39 4.52
158 159 1.596260 CGAGTTATACGAGTCGAGCCA 59.404 52.381 21.50 1.30 43.39 4.75
159 160 1.659771 GCGAGTTATACGAGTCGAGCC 60.660 57.143 21.50 2.06 43.39 4.70
160 161 1.661228 GCGAGTTATACGAGTCGAGC 58.339 55.000 21.50 7.30 43.39 5.03
161 162 1.520174 TCGCGAGTTATACGAGTCGAG 59.480 52.381 21.50 3.15 43.39 4.04
162 163 1.520174 CTCGCGAGTTATACGAGTCGA 59.480 52.381 27.79 3.11 46.19 4.20
163 164 1.921836 CTCGCGAGTTATACGAGTCG 58.078 55.000 27.79 11.85 46.19 4.18
167 168 0.306840 CCAGCTCGCGAGTTATACGA 59.693 55.000 34.46 0.00 0.00 3.43
168 169 0.029035 ACCAGCTCGCGAGTTATACG 59.971 55.000 34.46 18.00 0.00 3.06
169 170 2.117910 GAACCAGCTCGCGAGTTATAC 58.882 52.381 34.46 19.01 0.00 1.47
170 171 1.268386 CGAACCAGCTCGCGAGTTATA 60.268 52.381 34.46 0.00 31.04 0.98
171 172 0.525668 CGAACCAGCTCGCGAGTTAT 60.526 55.000 34.46 18.99 31.04 1.89
172 173 1.154093 CGAACCAGCTCGCGAGTTA 60.154 57.895 34.46 0.73 31.04 2.24
173 174 2.430921 CGAACCAGCTCGCGAGTT 60.431 61.111 34.46 28.10 31.04 3.01
174 175 2.694829 AAACGAACCAGCTCGCGAGT 62.695 55.000 34.46 19.89 42.69 4.18
175 176 0.731514 TAAACGAACCAGCTCGCGAG 60.732 55.000 31.37 31.37 42.69 5.03
176 177 0.731514 CTAAACGAACCAGCTCGCGA 60.732 55.000 9.26 9.26 42.69 5.87
177 178 1.702299 CTAAACGAACCAGCTCGCG 59.298 57.895 0.00 0.00 42.69 5.87
178 179 1.014564 AGCTAAACGAACCAGCTCGC 61.015 55.000 0.00 0.00 41.79 5.03
179 180 1.126846 CAAGCTAAACGAACCAGCTCG 59.873 52.381 0.00 0.00 44.70 5.03
180 181 2.143925 ACAAGCTAAACGAACCAGCTC 58.856 47.619 0.00 0.00 44.70 4.09
182 183 4.464112 CTTAACAAGCTAAACGAACCAGC 58.536 43.478 0.00 0.00 35.49 4.85
280 281 9.877178 TGTGTTACAAGGAAATTACAATTGTTT 57.123 25.926 17.78 4.93 35.77 2.83
282 283 9.474920 CATGTGTTACAAGGAAATTACAATTGT 57.525 29.630 16.68 16.68 37.77 2.71
283 284 9.689976 TCATGTGTTACAAGGAAATTACAATTG 57.310 29.630 3.24 3.24 0.00 2.32
284 285 9.912634 CTCATGTGTTACAAGGAAATTACAATT 57.087 29.630 0.00 0.00 0.00 2.32
285 286 8.028938 GCTCATGTGTTACAAGGAAATTACAAT 58.971 33.333 0.00 0.00 0.00 2.71
286 287 7.367285 GCTCATGTGTTACAAGGAAATTACAA 58.633 34.615 0.00 0.00 0.00 2.41
287 288 6.072175 GGCTCATGTGTTACAAGGAAATTACA 60.072 38.462 0.00 0.00 0.00 2.41
288 289 6.151144 AGGCTCATGTGTTACAAGGAAATTAC 59.849 38.462 0.00 0.00 0.00 1.89
289 290 6.245408 AGGCTCATGTGTTACAAGGAAATTA 58.755 36.000 0.00 0.00 0.00 1.40
290 291 5.079643 AGGCTCATGTGTTACAAGGAAATT 58.920 37.500 0.00 0.00 0.00 1.82
291 292 4.666512 AGGCTCATGTGTTACAAGGAAAT 58.333 39.130 0.00 0.00 0.00 2.17
292 293 4.098914 AGGCTCATGTGTTACAAGGAAA 57.901 40.909 0.00 0.00 0.00 3.13
293 294 3.788227 AGGCTCATGTGTTACAAGGAA 57.212 42.857 0.00 0.00 0.00 3.36
294 295 3.411446 CAAGGCTCATGTGTTACAAGGA 58.589 45.455 0.00 0.00 0.00 3.36
295 296 2.095059 GCAAGGCTCATGTGTTACAAGG 60.095 50.000 0.00 0.00 0.00 3.61
296 297 2.816087 AGCAAGGCTCATGTGTTACAAG 59.184 45.455 0.00 0.00 30.62 3.16
297 298 2.862541 AGCAAGGCTCATGTGTTACAA 58.137 42.857 0.00 0.00 30.62 2.41
298 299 2.566833 AGCAAGGCTCATGTGTTACA 57.433 45.000 0.00 0.00 30.62 2.41
299 300 3.253188 TGAAAGCAAGGCTCATGTGTTAC 59.747 43.478 0.00 0.00 38.25 2.50
300 301 3.485394 TGAAAGCAAGGCTCATGTGTTA 58.515 40.909 0.00 0.00 38.25 2.41
301 302 2.309613 TGAAAGCAAGGCTCATGTGTT 58.690 42.857 0.00 0.00 38.25 3.32
302 303 1.985473 TGAAAGCAAGGCTCATGTGT 58.015 45.000 0.00 0.00 38.25 3.72
303 304 2.753452 AGATGAAAGCAAGGCTCATGTG 59.247 45.455 0.00 0.00 38.25 3.21
304 305 3.015327 GAGATGAAAGCAAGGCTCATGT 58.985 45.455 0.00 0.00 38.25 3.21
305 306 2.358267 GGAGATGAAAGCAAGGCTCATG 59.642 50.000 0.00 0.00 38.25 3.07
306 307 2.652590 GGAGATGAAAGCAAGGCTCAT 58.347 47.619 0.00 0.00 38.25 2.90
307 308 1.340405 GGGAGATGAAAGCAAGGCTCA 60.340 52.381 0.00 0.00 38.25 4.26
308 309 1.340405 TGGGAGATGAAAGCAAGGCTC 60.340 52.381 0.00 0.00 38.25 4.70
309 310 0.700564 TGGGAGATGAAAGCAAGGCT 59.299 50.000 0.00 0.00 42.56 4.58
310 311 0.813821 GTGGGAGATGAAAGCAAGGC 59.186 55.000 0.00 0.00 0.00 4.35
311 312 1.089920 CGTGGGAGATGAAAGCAAGG 58.910 55.000 0.00 0.00 0.00 3.61
312 313 1.089920 CCGTGGGAGATGAAAGCAAG 58.910 55.000 0.00 0.00 0.00 4.01
313 314 0.400213 ACCGTGGGAGATGAAAGCAA 59.600 50.000 0.00 0.00 0.00 3.91
314 315 1.271856 TACCGTGGGAGATGAAAGCA 58.728 50.000 0.00 0.00 0.00 3.91
315 316 2.396590 TTACCGTGGGAGATGAAAGC 57.603 50.000 0.00 0.00 0.00 3.51
316 317 4.335594 GGAAATTACCGTGGGAGATGAAAG 59.664 45.833 0.00 0.00 0.00 2.62
317 318 4.018779 AGGAAATTACCGTGGGAGATGAAA 60.019 41.667 0.00 0.00 34.73 2.69
318 319 3.521937 AGGAAATTACCGTGGGAGATGAA 59.478 43.478 0.00 0.00 34.73 2.57
319 320 3.112263 AGGAAATTACCGTGGGAGATGA 58.888 45.455 0.00 0.00 34.73 2.92
320 321 3.560636 AGGAAATTACCGTGGGAGATG 57.439 47.619 0.00 0.00 34.73 2.90
321 322 3.265995 ACAAGGAAATTACCGTGGGAGAT 59.734 43.478 0.00 0.00 42.14 2.75
322 323 2.640826 ACAAGGAAATTACCGTGGGAGA 59.359 45.455 0.00 0.00 42.14 3.71
323 324 3.067684 ACAAGGAAATTACCGTGGGAG 57.932 47.619 0.00 0.00 42.14 4.30
324 325 4.041938 AGTTACAAGGAAATTACCGTGGGA 59.958 41.667 0.00 0.00 42.14 4.37
325 326 4.329392 AGTTACAAGGAAATTACCGTGGG 58.671 43.478 0.00 0.00 42.14 4.61
326 327 5.952526 AAGTTACAAGGAAATTACCGTGG 57.047 39.130 0.00 0.00 42.14 4.94
327 328 6.961576 TCAAAGTTACAAGGAAATTACCGTG 58.038 36.000 0.00 0.00 43.14 4.94
328 329 7.571080 TTCAAAGTTACAAGGAAATTACCGT 57.429 32.000 0.00 0.00 34.73 4.83
329 330 9.471084 AAATTCAAAGTTACAAGGAAATTACCG 57.529 29.630 0.00 0.00 34.73 4.02
334 335 9.981114 CCACTAAATTCAAAGTTACAAGGAAAT 57.019 29.630 0.00 0.00 0.00 2.17
335 336 8.973182 ACCACTAAATTCAAAGTTACAAGGAAA 58.027 29.630 0.00 0.00 0.00 3.13
336 337 8.410141 CACCACTAAATTCAAAGTTACAAGGAA 58.590 33.333 0.00 0.00 0.00 3.36
337 338 7.776030 TCACCACTAAATTCAAAGTTACAAGGA 59.224 33.333 0.00 0.00 0.00 3.36
338 339 7.936584 TCACCACTAAATTCAAAGTTACAAGG 58.063 34.615 0.00 0.00 0.00 3.61
339 340 9.965824 AATCACCACTAAATTCAAAGTTACAAG 57.034 29.630 0.00 0.00 0.00 3.16
342 343 9.556030 GCTAATCACCACTAAATTCAAAGTTAC 57.444 33.333 0.00 0.00 0.00 2.50
343 344 8.736244 GGCTAATCACCACTAAATTCAAAGTTA 58.264 33.333 0.00 0.00 0.00 2.24
344 345 7.309805 GGGCTAATCACCACTAAATTCAAAGTT 60.310 37.037 0.00 0.00 0.00 2.66
345 346 6.152831 GGGCTAATCACCACTAAATTCAAAGT 59.847 38.462 0.00 0.00 0.00 2.66
346 347 6.564328 GGGCTAATCACCACTAAATTCAAAG 58.436 40.000 0.00 0.00 0.00 2.77
347 348 5.124776 CGGGCTAATCACCACTAAATTCAAA 59.875 40.000 0.00 0.00 0.00 2.69
348 349 4.638421 CGGGCTAATCACCACTAAATTCAA 59.362 41.667 0.00 0.00 0.00 2.69
349 350 4.196193 CGGGCTAATCACCACTAAATTCA 58.804 43.478 0.00 0.00 0.00 2.57
350 351 4.196971 ACGGGCTAATCACCACTAAATTC 58.803 43.478 0.00 0.00 0.00 2.17
351 352 4.230745 ACGGGCTAATCACCACTAAATT 57.769 40.909 0.00 0.00 0.00 1.82
352 353 3.926058 ACGGGCTAATCACCACTAAAT 57.074 42.857 0.00 0.00 0.00 1.40
353 354 3.133362 CCTACGGGCTAATCACCACTAAA 59.867 47.826 0.00 0.00 0.00 1.85
354 355 2.696707 CCTACGGGCTAATCACCACTAA 59.303 50.000 0.00 0.00 0.00 2.24
355 356 2.091720 TCCTACGGGCTAATCACCACTA 60.092 50.000 0.00 0.00 0.00 2.74
356 357 1.120530 CCTACGGGCTAATCACCACT 58.879 55.000 0.00 0.00 0.00 4.00
357 358 1.117150 TCCTACGGGCTAATCACCAC 58.883 55.000 0.00 0.00 0.00 4.16
358 359 1.868713 TTCCTACGGGCTAATCACCA 58.131 50.000 0.00 0.00 0.00 4.17
359 360 2.994186 TTTCCTACGGGCTAATCACC 57.006 50.000 0.00 0.00 0.00 4.02
360 361 3.564225 CCAATTTCCTACGGGCTAATCAC 59.436 47.826 0.00 0.00 0.00 3.06
361 362 3.201266 ACCAATTTCCTACGGGCTAATCA 59.799 43.478 0.00 0.00 0.00 2.57
362 363 3.813724 GACCAATTTCCTACGGGCTAATC 59.186 47.826 0.00 0.00 0.00 1.75
363 364 3.458487 AGACCAATTTCCTACGGGCTAAT 59.542 43.478 0.00 0.00 34.11 1.73
364 365 2.841881 AGACCAATTTCCTACGGGCTAA 59.158 45.455 0.00 0.00 34.11 3.09
365 366 2.169769 CAGACCAATTTCCTACGGGCTA 59.830 50.000 0.00 0.00 33.33 3.93
366 367 1.065418 CAGACCAATTTCCTACGGGCT 60.065 52.381 0.00 0.00 37.36 5.19
367 368 1.339727 ACAGACCAATTTCCTACGGGC 60.340 52.381 0.00 0.00 0.00 6.13
368 369 2.781681 ACAGACCAATTTCCTACGGG 57.218 50.000 0.00 0.00 0.00 5.28
369 370 3.184541 CGTACAGACCAATTTCCTACGG 58.815 50.000 0.00 0.00 0.00 4.02
370 371 3.841643 ACGTACAGACCAATTTCCTACG 58.158 45.455 0.00 0.00 32.57 3.51
371 372 7.656707 TTAAACGTACAGACCAATTTCCTAC 57.343 36.000 0.00 0.00 0.00 3.18
372 373 7.933033 ACTTTAAACGTACAGACCAATTTCCTA 59.067 33.333 0.00 0.00 0.00 2.94
373 374 6.769341 ACTTTAAACGTACAGACCAATTTCCT 59.231 34.615 0.00 0.00 0.00 3.36
374 375 6.962686 ACTTTAAACGTACAGACCAATTTCC 58.037 36.000 0.00 0.00 0.00 3.13
375 376 8.845942 AAACTTTAAACGTACAGACCAATTTC 57.154 30.769 0.00 0.00 0.00 2.17
376 377 8.680001 AGAAACTTTAAACGTACAGACCAATTT 58.320 29.630 0.00 0.00 0.00 1.82
377 378 8.217131 AGAAACTTTAAACGTACAGACCAATT 57.783 30.769 0.00 0.00 0.00 2.32
378 379 7.797038 AGAAACTTTAAACGTACAGACCAAT 57.203 32.000 0.00 0.00 0.00 3.16
379 380 7.981225 AGTAGAAACTTTAAACGTACAGACCAA 59.019 33.333 0.00 0.00 29.00 3.67
380 381 7.491682 AGTAGAAACTTTAAACGTACAGACCA 58.508 34.615 0.00 0.00 29.00 4.02
381 382 7.936950 AGTAGAAACTTTAAACGTACAGACC 57.063 36.000 0.00 0.00 29.00 3.85
395 396 9.793259 TCTCCAATTGACAAATAGTAGAAACTT 57.207 29.630 7.12 0.00 37.15 2.66
396 397 9.965902 ATCTCCAATTGACAAATAGTAGAAACT 57.034 29.630 7.12 0.00 39.91 2.66
397 398 9.994432 CATCTCCAATTGACAAATAGTAGAAAC 57.006 33.333 7.12 0.00 0.00 2.78
398 399 9.958180 TCATCTCCAATTGACAAATAGTAGAAA 57.042 29.630 7.12 0.00 0.00 2.52
400 401 9.551734 CATCATCTCCAATTGACAAATAGTAGA 57.448 33.333 7.12 0.00 0.00 2.59
401 402 8.288208 GCATCATCTCCAATTGACAAATAGTAG 58.712 37.037 7.12 0.00 0.00 2.57
402 403 7.774625 TGCATCATCTCCAATTGACAAATAGTA 59.225 33.333 7.12 0.00 0.00 1.82
403 404 6.604396 TGCATCATCTCCAATTGACAAATAGT 59.396 34.615 7.12 0.00 0.00 2.12
404 405 6.916387 GTGCATCATCTCCAATTGACAAATAG 59.084 38.462 7.12 0.00 0.00 1.73
405 406 6.183360 GGTGCATCATCTCCAATTGACAAATA 60.183 38.462 7.12 0.00 0.00 1.40
406 407 5.394883 GGTGCATCATCTCCAATTGACAAAT 60.395 40.000 7.12 0.00 0.00 2.32
407 408 4.082081 GGTGCATCATCTCCAATTGACAAA 60.082 41.667 7.12 0.00 0.00 2.83
408 409 3.444742 GGTGCATCATCTCCAATTGACAA 59.555 43.478 7.12 0.00 0.00 3.18
409 410 3.018856 GGTGCATCATCTCCAATTGACA 58.981 45.455 7.12 0.00 0.00 3.58
410 411 2.032550 CGGTGCATCATCTCCAATTGAC 59.967 50.000 7.12 0.00 0.00 3.18
411 412 2.291365 CGGTGCATCATCTCCAATTGA 58.709 47.619 7.12 0.00 0.00 2.57
412 413 1.268896 GCGGTGCATCATCTCCAATTG 60.269 52.381 0.00 0.00 0.00 2.32
413 414 1.027357 GCGGTGCATCATCTCCAATT 58.973 50.000 0.00 0.00 0.00 2.32
414 415 0.182061 AGCGGTGCATCATCTCCAAT 59.818 50.000 0.00 0.00 0.00 3.16
415 416 0.829990 TAGCGGTGCATCATCTCCAA 59.170 50.000 0.00 0.00 0.00 3.53
416 417 0.390492 CTAGCGGTGCATCATCTCCA 59.610 55.000 0.00 0.00 0.00 3.86
417 418 0.676184 TCTAGCGGTGCATCATCTCC 59.324 55.000 0.00 0.00 0.00 3.71
418 419 2.288702 ACATCTAGCGGTGCATCATCTC 60.289 50.000 0.00 0.00 0.00 2.75
419 420 1.690893 ACATCTAGCGGTGCATCATCT 59.309 47.619 0.00 0.00 0.00 2.90
420 421 1.797046 CACATCTAGCGGTGCATCATC 59.203 52.381 0.00 0.00 0.00 2.92
421 422 1.413812 TCACATCTAGCGGTGCATCAT 59.586 47.619 0.00 0.00 35.04 2.45
422 423 0.823460 TCACATCTAGCGGTGCATCA 59.177 50.000 0.00 0.00 35.04 3.07
423 424 1.495878 CTCACATCTAGCGGTGCATC 58.504 55.000 0.00 0.00 35.04 3.91
424 425 0.105593 CCTCACATCTAGCGGTGCAT 59.894 55.000 0.00 0.00 35.04 3.96
425 426 1.517361 CCTCACATCTAGCGGTGCA 59.483 57.895 0.00 0.00 35.04 4.57
426 427 1.884926 GCCTCACATCTAGCGGTGC 60.885 63.158 0.00 0.00 35.04 5.01
427 428 0.105593 ATGCCTCACATCTAGCGGTG 59.894 55.000 0.00 7.14 31.52 4.94
428 429 0.105593 CATGCCTCACATCTAGCGGT 59.894 55.000 0.00 0.00 36.64 5.68
429 430 1.226686 GCATGCCTCACATCTAGCGG 61.227 60.000 6.36 0.00 36.64 5.52
430 431 0.249784 AGCATGCCTCACATCTAGCG 60.250 55.000 15.66 0.00 36.64 4.26
431 432 1.227639 CAGCATGCCTCACATCTAGC 58.772 55.000 15.66 0.00 36.64 3.42
432 433 1.140452 ACCAGCATGCCTCACATCTAG 59.860 52.381 15.66 0.00 36.64 2.43
471 472 1.154150 GTTCGCAGGCTGAATGTGC 60.154 57.895 20.86 0.52 0.00 4.57
472 473 1.394917 GTAGTTCGCAGGCTGAATGTG 59.605 52.381 20.86 0.00 0.00 3.21
473 474 1.001974 TGTAGTTCGCAGGCTGAATGT 59.998 47.619 20.86 0.08 0.00 2.71
475 476 1.276421 ACTGTAGTTCGCAGGCTGAAT 59.724 47.619 20.86 0.00 38.22 2.57
476 477 0.679505 ACTGTAGTTCGCAGGCTGAA 59.320 50.000 20.86 0.75 38.22 3.02
483 492 5.813672 ACAAAAGTCTTTACTGTAGTTCGCA 59.186 36.000 0.00 0.00 35.62 5.10
484 493 6.127403 CACAAAAGTCTTTACTGTAGTTCGC 58.873 40.000 0.00 0.00 35.62 4.70
486 495 7.011828 TGCACAAAAGTCTTTACTGTAGTTC 57.988 36.000 0.00 0.00 35.62 3.01
488 497 7.282224 TGAATGCACAAAAGTCTTTACTGTAGT 59.718 33.333 0.00 0.00 35.62 2.73
489 498 7.639039 TGAATGCACAAAAGTCTTTACTGTAG 58.361 34.615 0.00 0.00 35.62 2.74
492 501 6.498304 ACTGAATGCACAAAAGTCTTTACTG 58.502 36.000 0.00 0.00 35.62 2.74
494 503 5.915196 GGACTGAATGCACAAAAGTCTTTAC 59.085 40.000 15.98 1.82 37.87 2.01
495 504 5.277779 CGGACTGAATGCACAAAAGTCTTTA 60.278 40.000 15.98 0.00 37.87 1.85
498 507 2.549754 CGGACTGAATGCACAAAAGTCT 59.450 45.455 15.98 0.00 37.87 3.24
500 509 1.608590 CCGGACTGAATGCACAAAAGT 59.391 47.619 0.00 0.00 0.00 2.66
501 510 1.666888 GCCGGACTGAATGCACAAAAG 60.667 52.381 5.05 0.00 0.00 2.27
503 512 0.537143 AGCCGGACTGAATGCACAAA 60.537 50.000 5.05 0.00 0.00 2.83
505 514 0.323302 TTAGCCGGACTGAATGCACA 59.677 50.000 5.05 0.00 0.00 4.57
508 517 2.221055 CGTTATTAGCCGGACTGAATGC 59.779 50.000 5.05 0.00 0.00 3.56
509 518 3.713288 TCGTTATTAGCCGGACTGAATG 58.287 45.455 5.05 4.57 0.00 2.67
513 522 3.181489 ACTTCTCGTTATTAGCCGGACTG 60.181 47.826 5.05 0.00 0.00 3.51
516 525 5.068636 AGATACTTCTCGTTATTAGCCGGA 58.931 41.667 5.05 0.00 0.00 5.14
517 526 5.373981 AGATACTTCTCGTTATTAGCCGG 57.626 43.478 0.00 0.00 0.00 6.13
532 541 5.221803 CCTGGGAAGTATGCATGAGATACTT 60.222 44.000 21.63 21.63 45.29 2.24
534 543 4.564406 CCCTGGGAAGTATGCATGAGATAC 60.564 50.000 7.01 0.00 0.00 2.24
536 545 2.374504 CCCTGGGAAGTATGCATGAGAT 59.625 50.000 7.01 0.00 0.00 2.75
537 546 1.770658 CCCTGGGAAGTATGCATGAGA 59.229 52.381 7.01 0.00 0.00 3.27
538 547 1.770658 TCCCTGGGAAGTATGCATGAG 59.229 52.381 14.48 0.00 0.00 2.90
539 548 1.770658 CTCCCTGGGAAGTATGCATGA 59.229 52.381 17.81 0.00 0.00 3.07
540 549 1.492176 ACTCCCTGGGAAGTATGCATG 59.508 52.381 17.81 4.06 0.00 4.06
541 550 1.492176 CACTCCCTGGGAAGTATGCAT 59.508 52.381 17.81 3.79 0.00 3.96
543 552 0.181350 CCACTCCCTGGGAAGTATGC 59.819 60.000 17.81 0.00 36.18 3.14
544 553 1.486726 GTCCACTCCCTGGGAAGTATG 59.513 57.143 17.81 12.15 41.06 2.39
546 555 0.790993 AGTCCACTCCCTGGGAAGTA 59.209 55.000 17.81 0.00 41.06 2.24
548 557 0.545309 TCAGTCCACTCCCTGGGAAG 60.545 60.000 17.81 12.09 41.06 3.46
549 558 0.545309 CTCAGTCCACTCCCTGGGAA 60.545 60.000 17.81 0.00 41.06 3.97
551 560 2.664081 GCTCAGTCCACTCCCTGGG 61.664 68.421 6.33 6.33 41.06 4.45
552 561 1.270414 ATGCTCAGTCCACTCCCTGG 61.270 60.000 0.00 0.00 42.29 4.45
553 562 1.489481 TATGCTCAGTCCACTCCCTG 58.511 55.000 0.00 0.00 0.00 4.45
554 563 2.114616 CTTATGCTCAGTCCACTCCCT 58.885 52.381 0.00 0.00 0.00 4.20
555 564 1.834263 ACTTATGCTCAGTCCACTCCC 59.166 52.381 0.00 0.00 0.00 4.30
556 565 3.447586 TGTACTTATGCTCAGTCCACTCC 59.552 47.826 0.00 0.00 0.00 3.85
557 566 4.720649 TGTACTTATGCTCAGTCCACTC 57.279 45.455 0.00 0.00 0.00 3.51
558 567 5.683876 AATGTACTTATGCTCAGTCCACT 57.316 39.130 0.00 0.00 0.00 4.00
559 568 8.438676 AATAAATGTACTTATGCTCAGTCCAC 57.561 34.615 0.00 0.00 0.00 4.02
560 569 9.461312 AAAATAAATGTACTTATGCTCAGTCCA 57.539 29.630 0.00 0.00 0.00 4.02
572 581 8.194769 CCTGCCCGAAATAAAATAAATGTACTT 58.805 33.333 0.00 0.00 0.00 2.24
573 582 7.201875 CCCTGCCCGAAATAAAATAAATGTACT 60.202 37.037 0.00 0.00 0.00 2.73
575 584 6.461788 GCCCTGCCCGAAATAAAATAAATGTA 60.462 38.462 0.00 0.00 0.00 2.29
576 585 5.683770 GCCCTGCCCGAAATAAAATAAATGT 60.684 40.000 0.00 0.00 0.00 2.71
577 586 4.749598 GCCCTGCCCGAAATAAAATAAATG 59.250 41.667 0.00 0.00 0.00 2.32
578 587 4.500716 CGCCCTGCCCGAAATAAAATAAAT 60.501 41.667 0.00 0.00 0.00 1.40
579 588 3.181485 CGCCCTGCCCGAAATAAAATAAA 60.181 43.478 0.00 0.00 0.00 1.40
580 589 2.359531 CGCCCTGCCCGAAATAAAATAA 59.640 45.455 0.00 0.00 0.00 1.40
582 591 0.744281 CGCCCTGCCCGAAATAAAAT 59.256 50.000 0.00 0.00 0.00 1.82
583 592 1.316706 CCGCCCTGCCCGAAATAAAA 61.317 55.000 0.00 0.00 0.00 1.52
584 593 1.751162 CCGCCCTGCCCGAAATAAA 60.751 57.895 0.00 0.00 0.00 1.40
586 595 4.183858 CCCGCCCTGCCCGAAATA 62.184 66.667 0.00 0.00 0.00 1.40
599 608 2.414840 AAAAACGTGCCATGACCCGC 62.415 55.000 0.00 0.00 0.00 6.13
600 609 0.662970 CAAAAACGTGCCATGACCCG 60.663 55.000 0.00 0.00 0.00 5.28
602 611 2.516486 GCAAAAACGTGCCATGACC 58.484 52.632 0.00 0.00 38.66 4.02
609 618 1.370778 GGTACGGGCAAAAACGTGC 60.371 57.895 0.00 0.00 43.93 5.34
610 619 0.664224 AAGGTACGGGCAAAAACGTG 59.336 50.000 0.00 0.00 43.93 4.49
611 620 0.946528 GAAGGTACGGGCAAAAACGT 59.053 50.000 0.00 0.00 46.17 3.99
612 621 0.110554 CGAAGGTACGGGCAAAAACG 60.111 55.000 0.00 0.00 0.00 3.60
613 622 0.946528 ACGAAGGTACGGGCAAAAAC 59.053 50.000 0.00 0.00 37.61 2.43
614 623 1.202675 AGACGAAGGTACGGGCAAAAA 60.203 47.619 0.00 0.00 37.61 1.94
615 624 0.393820 AGACGAAGGTACGGGCAAAA 59.606 50.000 0.00 0.00 37.61 2.44
616 625 0.320073 CAGACGAAGGTACGGGCAAA 60.320 55.000 0.00 0.00 37.61 3.68
617 626 1.290955 CAGACGAAGGTACGGGCAA 59.709 57.895 0.00 0.00 37.61 4.52
618 627 1.904865 ACAGACGAAGGTACGGGCA 60.905 57.895 0.00 0.00 37.61 5.36
619 628 1.445582 CACAGACGAAGGTACGGGC 60.446 63.158 0.00 0.00 37.61 6.13
620 629 0.316204 AACACAGACGAAGGTACGGG 59.684 55.000 0.00 0.00 37.61 5.28
621 630 1.668047 GGAACACAGACGAAGGTACGG 60.668 57.143 0.00 0.00 37.61 4.02
622 631 1.268899 AGGAACACAGACGAAGGTACG 59.731 52.381 0.00 0.00 39.31 3.67
623 632 2.557490 AGAGGAACACAGACGAAGGTAC 59.443 50.000 0.00 0.00 0.00 3.34
624 633 2.872732 AGAGGAACACAGACGAAGGTA 58.127 47.619 0.00 0.00 0.00 3.08
625 634 1.705873 AGAGGAACACAGACGAAGGT 58.294 50.000 0.00 0.00 0.00 3.50
626 635 2.297597 AGAAGAGGAACACAGACGAAGG 59.702 50.000 0.00 0.00 0.00 3.46
627 636 3.254657 AGAGAAGAGGAACACAGACGAAG 59.745 47.826 0.00 0.00 0.00 3.79
628 637 3.223435 AGAGAAGAGGAACACAGACGAA 58.777 45.455 0.00 0.00 0.00 3.85
629 638 2.865079 AGAGAAGAGGAACACAGACGA 58.135 47.619 0.00 0.00 0.00 4.20
630 639 3.754323 AGTAGAGAAGAGGAACACAGACG 59.246 47.826 0.00 0.00 0.00 4.18
631 640 5.715434 AAGTAGAGAAGAGGAACACAGAC 57.285 43.478 0.00 0.00 0.00 3.51
632 641 6.071984 AGAAAGTAGAGAAGAGGAACACAGA 58.928 40.000 0.00 0.00 0.00 3.41
633 642 6.339587 AGAAAGTAGAGAAGAGGAACACAG 57.660 41.667 0.00 0.00 0.00 3.66
634 643 6.239345 GGAAGAAAGTAGAGAAGAGGAACACA 60.239 42.308 0.00 0.00 0.00 3.72
635 644 6.160684 GGAAGAAAGTAGAGAAGAGGAACAC 58.839 44.000 0.00 0.00 0.00 3.32
636 645 5.839063 TGGAAGAAAGTAGAGAAGAGGAACA 59.161 40.000 0.00 0.00 0.00 3.18
637 646 6.160684 GTGGAAGAAAGTAGAGAAGAGGAAC 58.839 44.000 0.00 0.00 0.00 3.62
638 647 5.047943 CGTGGAAGAAAGTAGAGAAGAGGAA 60.048 44.000 0.00 0.00 0.00 3.36
639 648 4.459685 CGTGGAAGAAAGTAGAGAAGAGGA 59.540 45.833 0.00 0.00 0.00 3.71
640 649 4.459685 TCGTGGAAGAAAGTAGAGAAGAGG 59.540 45.833 0.00 0.00 0.00 3.69
641 650 5.630661 TCGTGGAAGAAAGTAGAGAAGAG 57.369 43.478 0.00 0.00 0.00 2.85
642 651 7.698506 TTATCGTGGAAGAAAGTAGAGAAGA 57.301 36.000 0.00 0.00 0.00 2.87
643 652 7.275999 GGTTTATCGTGGAAGAAAGTAGAGAAG 59.724 40.741 0.00 0.00 0.00 2.85
644 653 7.039223 AGGTTTATCGTGGAAGAAAGTAGAGAA 60.039 37.037 0.00 0.00 0.00 2.87
645 654 6.436532 AGGTTTATCGTGGAAGAAAGTAGAGA 59.563 38.462 0.00 0.00 0.00 3.10
646 655 6.631962 AGGTTTATCGTGGAAGAAAGTAGAG 58.368 40.000 0.00 0.00 0.00 2.43
647 656 6.209986 TGAGGTTTATCGTGGAAGAAAGTAGA 59.790 38.462 0.00 0.00 0.00 2.59
648 657 6.395629 TGAGGTTTATCGTGGAAGAAAGTAG 58.604 40.000 0.00 0.00 0.00 2.57
649 658 6.349243 TGAGGTTTATCGTGGAAGAAAGTA 57.651 37.500 0.00 0.00 0.00 2.24
650 659 5.223449 TGAGGTTTATCGTGGAAGAAAGT 57.777 39.130 0.00 0.00 0.00 2.66
651 660 7.096023 CGATATGAGGTTTATCGTGGAAGAAAG 60.096 40.741 5.23 0.00 42.05 2.62
652 661 6.700081 CGATATGAGGTTTATCGTGGAAGAAA 59.300 38.462 5.23 0.00 42.05 2.52
653 662 6.213677 CGATATGAGGTTTATCGTGGAAGAA 58.786 40.000 5.23 0.00 42.05 2.52
654 663 5.769367 CGATATGAGGTTTATCGTGGAAGA 58.231 41.667 5.23 0.00 42.05 2.87
662 671 7.117236 TGCCGAATTTACGATATGAGGTTTATC 59.883 37.037 0.00 0.00 35.09 1.75
663 672 6.932400 TGCCGAATTTACGATATGAGGTTTAT 59.068 34.615 0.00 0.00 35.09 1.40
664 673 6.282167 TGCCGAATTTACGATATGAGGTTTA 58.718 36.000 0.00 0.00 35.09 2.01
665 674 5.120399 TGCCGAATTTACGATATGAGGTTT 58.880 37.500 0.00 0.00 35.09 3.27
666 675 4.699637 TGCCGAATTTACGATATGAGGTT 58.300 39.130 0.00 0.00 35.09 3.50
667 676 4.038763 TCTGCCGAATTTACGATATGAGGT 59.961 41.667 0.00 0.00 35.09 3.85
668 677 4.556233 TCTGCCGAATTTACGATATGAGG 58.444 43.478 0.00 0.00 35.09 3.86
675 684 6.508880 CGAATAATGTTCTGCCGAATTTACGA 60.509 38.462 0.00 0.00 35.09 3.43
779 788 0.752658 TGGTGGTGTGACAGAGTCAG 59.247 55.000 0.00 0.00 43.57 3.51
924 938 7.435305 AGAGAGACGCGCAGATATATATAGTA 58.565 38.462 5.73 0.00 0.00 1.82
927 941 6.987404 AGAAGAGAGACGCGCAGATATATATA 59.013 38.462 5.73 0.00 0.00 0.86
928 942 5.820423 AGAAGAGAGACGCGCAGATATATAT 59.180 40.000 5.73 0.00 0.00 0.86
1020 1041 0.394565 AGCTGAAGAACGAAGGTGCT 59.605 50.000 0.00 0.00 31.39 4.40
1209 1230 4.840005 GCGTACTCCAGGCTGCCC 62.840 72.222 16.57 0.00 35.12 5.36
1288 1309 2.181021 GACGACCGCGAACAGGAT 59.819 61.111 8.23 0.00 41.64 3.24
1410 1440 3.651980 GAGCAAGGGCCCCTTCAGG 62.652 68.421 21.43 2.53 42.67 3.86
1452 1482 3.320733 AACACGATGTAGACGATCTCG 57.679 47.619 0.00 0.00 46.33 4.04
1656 1695 3.467226 GCCAGCCTACACGCCCTA 61.467 66.667 0.00 0.00 0.00 3.53
1723 1762 2.897207 CGATAGGACGGTGGCCAA 59.103 61.111 7.24 0.00 0.00 4.52
1742 1781 4.942481 TCGCGAGCGTGTGCACTT 62.942 61.111 19.41 0.65 46.23 3.16
1767 1806 4.137872 GCCACGCTACTACCCGCA 62.138 66.667 0.00 0.00 0.00 5.69
1785 1827 1.655114 AACCCAGGAGCAACCCAAGT 61.655 55.000 0.00 0.00 40.05 3.16
1851 1893 1.447140 GTAGAACGCGGTCATGGCA 60.447 57.895 28.31 2.39 0.00 4.92
1894 1936 2.774351 AGTATCCCCCAGCTGGCC 60.774 66.667 28.39 9.64 0.00 5.36
1913 1955 4.652421 TCCGTTGATAACTTGGCGTATA 57.348 40.909 0.00 0.00 0.00 1.47
1970 2015 8.207545 TGAAGTAAAAATTACAGCCAACCATTT 58.792 29.630 3.37 0.00 0.00 2.32
1972 2017 7.296628 TGAAGTAAAAATTACAGCCAACCAT 57.703 32.000 3.37 0.00 0.00 3.55
1991 2038 8.531982 ACACACATAGTCTAACATACATGAAGT 58.468 33.333 0.00 0.00 0.00 3.01
1992 2039 8.811378 CACACACATAGTCTAACATACATGAAG 58.189 37.037 0.00 0.00 0.00 3.02
1996 2043 7.545615 CACACACACACATAGTCTAACATACAT 59.454 37.037 0.00 0.00 0.00 2.29
2002 2049 5.047847 ACACACACACACACATAGTCTAAC 58.952 41.667 0.00 0.00 0.00 2.34
2006 2053 3.001228 CACACACACACACACACATAGTC 59.999 47.826 0.00 0.00 0.00 2.59
2007 2054 2.935849 CACACACACACACACACATAGT 59.064 45.455 0.00 0.00 0.00 2.12
2008 2055 2.935849 ACACACACACACACACACATAG 59.064 45.455 0.00 0.00 0.00 2.23
2014 2061 1.537638 TCCAAACACACACACACACAC 59.462 47.619 0.00 0.00 0.00 3.82
2016 2063 2.999507 TTCCAAACACACACACACAC 57.000 45.000 0.00 0.00 0.00 3.82
2018 2065 2.192624 GCATTCCAAACACACACACAC 58.807 47.619 0.00 0.00 0.00 3.82
2020 2067 2.575694 TGCATTCCAAACACACACAC 57.424 45.000 0.00 0.00 0.00 3.82
2021 2068 2.802415 GCATGCATTCCAAACACACACA 60.802 45.455 14.21 0.00 0.00 3.72
2022 2069 1.794116 GCATGCATTCCAAACACACAC 59.206 47.619 14.21 0.00 0.00 3.82
2023 2070 1.687660 AGCATGCATTCCAAACACACA 59.312 42.857 21.98 0.00 0.00 3.72
2024 2071 2.331194 GAGCATGCATTCCAAACACAC 58.669 47.619 21.98 0.00 0.00 3.82
2025 2072 1.273048 GGAGCATGCATTCCAAACACA 59.727 47.619 21.98 0.00 33.55 3.72
2026 2073 1.547372 AGGAGCATGCATTCCAAACAC 59.453 47.619 23.69 0.75 35.88 3.32
2027 2074 1.927487 AGGAGCATGCATTCCAAACA 58.073 45.000 23.69 0.00 35.88 2.83
2028 2075 3.019564 AGTAGGAGCATGCATTCCAAAC 58.980 45.455 23.69 20.06 35.88 2.93
2031 2078 5.249163 ACATATAGTAGGAGCATGCATTCCA 59.751 40.000 23.69 10.26 35.88 3.53
2049 2096 3.376234 CGCCGGCTAGCTAGTTACATATA 59.624 47.826 26.68 0.00 0.00 0.86
2095 2142 7.327214 TGTTTCTTTAAATGGAAAGTGTGCTT 58.673 30.769 3.56 0.00 37.62 3.91
2108 2155 6.649155 ACCAGGTGCTTTTGTTTCTTTAAAT 58.351 32.000 0.00 0.00 0.00 1.40
2139 2186 6.682746 TGACGCTTTCCTTTTTATGCAATTA 58.317 32.000 0.00 0.00 0.00 1.40
2171 2220 2.806244 CGCCCTAATAAATGTAAGCGCT 59.194 45.455 2.64 2.64 35.58 5.92
2173 2222 4.688879 TGATCGCCCTAATAAATGTAAGCG 59.311 41.667 0.00 0.00 43.42 4.68
2230 2301 6.458751 CGATGGAAACGGATCTGAATTTTGAT 60.459 38.462 9.00 0.00 0.00 2.57
2412 2489 6.884836 GTCATGGTAACCAACTTAGAAGGATT 59.115 38.462 0.00 0.00 36.95 3.01
2443 2520 6.311690 GTGATTTAGAGGTGAAGCTAGTCAAC 59.688 42.308 0.00 0.00 35.30 3.18
2551 2633 6.231951 TCAAACAAATTAGGTGACCGTCATA 58.768 36.000 4.13 0.00 0.00 2.15
2656 2738 0.548031 TGGGATCTGGCTTGATGTCC 59.452 55.000 0.00 0.00 0.00 4.02
2668 2750 1.496857 TCGTCTGAGGAGATGGGATCT 59.503 52.381 0.00 0.00 43.70 2.75
2762 2846 1.628846 AGGTTGATCGTTGGGTTAGCT 59.371 47.619 0.00 0.00 0.00 3.32
2775 2859 0.037605 GACAACGGTCGGAGGTTGAT 60.038 55.000 21.77 10.68 44.80 2.57
2796 2880 3.060615 AGCGTAGAGGGCGTCGTT 61.061 61.111 0.96 0.00 35.00 3.85
2801 2885 4.577246 GGAGCAGCGTAGAGGGCG 62.577 72.222 0.00 0.00 35.00 6.13
2825 2909 4.022935 ACATCTAGTTTTGGACGTCGTGTA 60.023 41.667 9.92 0.00 0.00 2.90
2872 2956 1.133513 AGAAATGGTTGGTGCAGTGGA 60.134 47.619 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.