Multiple sequence alignment - TraesCS6B01G321300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G321300 chr6B 100.000 4648 0 0 1 4648 569048475 569043828 0.000000e+00 8584.0
1 TraesCS6B01G321300 chr6B 93.836 438 22 1 369 806 107879414 107879846 0.000000e+00 654.0
2 TraesCS6B01G321300 chr6B 100.000 51 0 0 3199 3249 569045223 569045173 1.380000e-15 95.3
3 TraesCS6B01G321300 chr6B 100.000 51 0 0 3253 3303 569045277 569045227 1.380000e-15 95.3
4 TraesCS6B01G321300 chr6B 97.826 46 1 0 1391 1436 569047046 569047001 3.860000e-11 80.5
5 TraesCS6B01G321300 chr6B 97.826 46 1 0 1430 1475 569047085 569047040 3.860000e-11 80.5
6 TraesCS6B01G321300 chr6D 95.597 1817 60 9 1430 3230 381344852 381346664 0.000000e+00 2894.0
7 TraesCS6B01G321300 chr6D 93.422 1353 46 10 3280 4599 381346633 381347975 0.000000e+00 1965.0
8 TraesCS6B01G321300 chr6D 93.082 636 21 6 807 1436 381344279 381344897 0.000000e+00 909.0
9 TraesCS6B01G321300 chr6D 95.109 368 14 3 2 368 381343922 381344286 1.120000e-160 577.0
10 TraesCS6B01G321300 chr6D 100.000 32 0 0 3226 3257 381346633 381346664 5.020000e-05 60.2
11 TraesCS6B01G321300 chr6D 100.000 32 0 0 3253 3284 381346633 381346664 5.020000e-05 60.2
12 TraesCS6B01G321300 chr6A 94.819 1853 72 10 1429 3257 522608352 522610204 0.000000e+00 2868.0
13 TraesCS6B01G321300 chr6A 89.316 1198 54 31 3444 4599 522610295 522611460 0.000000e+00 1435.0
14 TraesCS6B01G321300 chr6A 87.615 654 31 17 807 1431 522607761 522608393 0.000000e+00 713.0
15 TraesCS6B01G321300 chr6A 88.095 378 32 6 2 368 522607393 522607768 1.990000e-118 436.0
16 TraesCS6B01G321300 chr6A 98.000 200 1 1 3253 3449 522610146 522610345 1.240000e-90 344.0
17 TraesCS6B01G321300 chr6A 100.000 59 0 0 3226 3284 522610146 522610204 4.920000e-20 110.0
18 TraesCS6B01G321300 chr6A 75.773 194 24 13 4065 4239 105585580 105585769 4.990000e-10 76.8
19 TraesCS6B01G321300 chr6A 100.000 32 0 0 3199 3230 522610173 522610204 5.020000e-05 60.2
20 TraesCS6B01G321300 chr6A 100.000 31 0 0 4618 4648 522611460 522611490 1.810000e-04 58.4
21 TraesCS6B01G321300 chr7B 95.238 441 19 2 367 806 246018449 246018888 0.000000e+00 697.0
22 TraesCS6B01G321300 chr7B 94.533 439 22 2 369 806 351929384 351929821 0.000000e+00 676.0
23 TraesCS6B01G321300 chr7B 91.525 59 5 0 4065 4123 491163532 491163590 1.070000e-11 82.4
24 TraesCS6B01G321300 chr3B 95.434 438 18 2 369 805 141865620 141865184 0.000000e+00 697.0
25 TraesCS6B01G321300 chr4A 95.227 440 19 2 369 807 637413879 637414317 0.000000e+00 695.0
26 TraesCS6B01G321300 chr4A 89.394 66 6 1 4065 4129 546123835 546123770 1.070000e-11 82.4
27 TraesCS6B01G321300 chr4A 100.000 28 0 0 72 99 611267160 611267187 8.000000e-03 52.8
28 TraesCS6B01G321300 chr5B 94.582 443 22 2 365 806 384739966 384739525 0.000000e+00 684.0
29 TraesCS6B01G321300 chr5B 93.289 447 23 4 369 809 679824502 679824057 0.000000e+00 652.0
30 TraesCS6B01G321300 chr2B 95.714 420 16 2 365 782 36838629 36839048 0.000000e+00 675.0
31 TraesCS6B01G321300 chr1B 94.318 440 24 1 367 806 188260106 188259668 0.000000e+00 673.0
32 TraesCS6B01G321300 chr1B 83.562 73 11 1 101 173 640153722 640153793 3.000000e-07 67.6
33 TraesCS6B01G321300 chr1A 78.475 223 36 8 64 277 71056958 71057177 8.110000e-28 135.0
34 TraesCS6B01G321300 chr1A 88.060 67 6 2 4065 4129 243434383 243434317 1.390000e-10 78.7
35 TraesCS6B01G321300 chr1A 87.692 65 8 0 4065 4129 272182914 272182850 4.990000e-10 76.8
36 TraesCS6B01G321300 chr3A 89.394 66 6 1 4065 4129 352926402 352926467 1.070000e-11 82.4
37 TraesCS6B01G321300 chr1D 89.231 65 7 0 4065 4129 109808013 109807949 1.070000e-11 82.4
38 TraesCS6B01G321300 chr5D 81.250 96 14 4 184 277 490163027 490163120 1.790000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G321300 chr6B 569043828 569048475 4647 True 1787.120000 8584 99.130400 1 4648 5 chr6B.!!$R1 4647
1 TraesCS6B01G321300 chr6D 381343922 381347975 4053 False 1077.566667 2894 96.201667 2 4599 6 chr6D.!!$F1 4597
2 TraesCS6B01G321300 chr6A 522607393 522611490 4097 False 753.075000 2868 94.730625 2 4648 8 chr6A.!!$F2 4646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 747 0.034896 AATAATCGTGCCTAGGCGGG 59.965 55.0 28.28 21.6 45.51 6.13 F
761 775 0.179048 TGCCAGGCACGATTAGGATG 60.179 55.0 11.22 0.0 31.71 3.51 F
763 777 0.250467 CCAGGCACGATTAGGATGGG 60.250 60.0 0.00 0.0 0.00 4.00 F
1377 1419 0.319211 CGTGGACGCCAGTCTGTTTA 60.319 55.0 0.00 0.0 46.29 2.01 F
3234 3327 0.329261 TGCTTATGTTCCTGGCAGCT 59.671 50.0 9.56 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 1731 0.317269 GCAAATCCGACGATGCATGG 60.317 55.000 2.46 5.24 38.63 3.66 R
1941 1998 2.286294 GCTAACTCATCATCAAGCACCG 59.714 50.000 0.00 0.00 0.00 4.94 R
2249 2306 2.286872 GAGCTCCCATGTGAACTGATG 58.713 52.381 0.87 0.00 0.00 3.07 R
3242 3335 0.329261 AGCTGCCAGGAACATAAGCA 59.671 50.000 0.00 0.00 33.08 3.91 R
4042 4164 0.103823 TAAACCCTCTCCAACCCCCA 60.104 55.000 0.00 0.00 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 4.993029 AGAGATTGAGGTAAGAACGAGG 57.007 45.455 0.00 0.00 0.00 4.63
39 41 8.705048 AGAACGAGGAAAATAGAGTATGTTTC 57.295 34.615 0.00 0.00 0.00 2.78
113 115 9.934190 ATCAAACTTTTTAATGACAATTTGTGC 57.066 25.926 6.80 0.00 0.00 4.57
121 123 1.268999 TGACAATTTGTGCTTGCCGAC 60.269 47.619 6.80 0.00 0.00 4.79
147 150 5.404466 AGCAAATTTAGTTGGCAAGCATA 57.596 34.783 0.00 0.00 39.36 3.14
160 163 3.119495 GGCAAGCATAACAAATCCGTCTT 60.119 43.478 0.00 0.00 0.00 3.01
167 170 6.092259 AGCATAACAAATCCGTCTTAGTTCAC 59.908 38.462 0.00 0.00 0.00 3.18
210 213 7.130303 TCGTAAACTATATCTGTCATCCTCG 57.870 40.000 0.00 0.00 0.00 4.63
317 329 1.907807 GCCCCATGTTGAGTTGGCA 60.908 57.895 0.00 0.00 38.73 4.92
326 340 5.065218 CCATGTTGAGTTGGCAGTATAAGTC 59.935 44.000 0.00 0.00 0.00 3.01
361 375 3.135814 GCGGTATAAGCCCTCGGT 58.864 61.111 0.00 0.00 0.00 4.69
362 376 1.300697 GCGGTATAAGCCCTCGGTG 60.301 63.158 0.00 0.00 0.00 4.94
363 377 2.024590 GCGGTATAAGCCCTCGGTGT 62.025 60.000 0.00 0.00 0.00 4.16
364 378 1.321474 CGGTATAAGCCCTCGGTGTA 58.679 55.000 0.00 0.00 0.00 2.90
365 379 1.682854 CGGTATAAGCCCTCGGTGTAA 59.317 52.381 0.00 0.00 0.00 2.41
366 380 2.101249 CGGTATAAGCCCTCGGTGTAAA 59.899 50.000 0.00 0.00 0.00 2.01
367 381 3.461061 GGTATAAGCCCTCGGTGTAAAC 58.539 50.000 0.00 0.00 0.00 2.01
368 382 3.133542 GGTATAAGCCCTCGGTGTAAACT 59.866 47.826 0.00 0.00 0.00 2.66
369 383 4.342092 GGTATAAGCCCTCGGTGTAAACTA 59.658 45.833 0.00 0.00 0.00 2.24
370 384 5.011431 GGTATAAGCCCTCGGTGTAAACTAT 59.989 44.000 0.00 0.00 0.00 2.12
371 385 6.209391 GGTATAAGCCCTCGGTGTAAACTATA 59.791 42.308 0.00 0.00 0.00 1.31
372 386 4.667519 AAGCCCTCGGTGTAAACTATAG 57.332 45.455 0.00 0.00 0.00 1.31
373 387 2.364647 AGCCCTCGGTGTAAACTATAGC 59.635 50.000 0.00 0.00 0.00 2.97
374 388 2.364647 GCCCTCGGTGTAAACTATAGCT 59.635 50.000 0.00 0.00 0.00 3.32
375 389 3.799232 GCCCTCGGTGTAAACTATAGCTG 60.799 52.174 0.00 0.00 0.00 4.24
376 390 3.243771 CCCTCGGTGTAAACTATAGCTGG 60.244 52.174 0.00 0.00 0.00 4.85
377 391 3.381949 CTCGGTGTAAACTATAGCTGGC 58.618 50.000 0.00 0.00 0.00 4.85
378 392 2.101917 TCGGTGTAAACTATAGCTGGCC 59.898 50.000 0.00 0.00 0.00 5.36
379 393 2.159014 CGGTGTAAACTATAGCTGGCCA 60.159 50.000 4.71 4.71 0.00 5.36
380 394 3.680475 CGGTGTAAACTATAGCTGGCCAA 60.680 47.826 7.01 0.00 0.00 4.52
381 395 4.266714 GGTGTAAACTATAGCTGGCCAAA 58.733 43.478 7.01 0.00 0.00 3.28
382 396 4.095932 GGTGTAAACTATAGCTGGCCAAAC 59.904 45.833 7.01 1.16 0.00 2.93
383 397 3.936453 TGTAAACTATAGCTGGCCAAACG 59.064 43.478 7.01 0.00 0.00 3.60
384 398 2.038387 AACTATAGCTGGCCAAACGG 57.962 50.000 7.01 0.00 0.00 4.44
385 399 0.180406 ACTATAGCTGGCCAAACGGG 59.820 55.000 7.01 0.00 40.85 5.28
394 408 2.203153 CCAAACGGGCCGGGATAG 60.203 66.667 31.78 14.48 0.00 2.08
395 409 2.587889 CAAACGGGCCGGGATAGT 59.412 61.111 31.78 4.41 0.00 2.12
396 410 1.078001 CAAACGGGCCGGGATAGTT 60.078 57.895 31.78 11.46 0.00 2.24
397 411 1.078001 AAACGGGCCGGGATAGTTG 60.078 57.895 31.78 0.00 0.00 3.16
398 412 2.546114 AAACGGGCCGGGATAGTTGG 62.546 60.000 31.78 0.00 0.00 3.77
399 413 4.250305 CGGGCCGGGATAGTTGGG 62.250 72.222 20.56 0.00 0.00 4.12
400 414 4.581093 GGGCCGGGATAGTTGGGC 62.581 72.222 2.18 0.00 46.84 5.36
402 416 4.929707 GCCGGGATAGTTGGGCCG 62.930 72.222 2.18 0.00 39.67 6.13
403 417 4.250305 CCGGGATAGTTGGGCCGG 62.250 72.222 0.00 0.00 34.60 6.13
404 418 4.929707 CGGGATAGTTGGGCCGGC 62.930 72.222 21.18 21.18 0.00 6.13
405 419 4.581093 GGGATAGTTGGGCCGGCC 62.581 72.222 38.57 38.57 0.00 6.13
443 457 4.743558 CACGGCACATGCTAAACG 57.256 55.556 3.48 1.36 41.70 3.60
444 458 1.134487 CACGGCACATGCTAAACGG 59.866 57.895 3.48 0.00 41.70 4.44
445 459 2.038269 ACGGCACATGCTAAACGGG 61.038 57.895 3.48 0.00 41.70 5.28
446 460 2.489751 GGCACATGCTAAACGGGC 59.510 61.111 3.48 0.00 41.70 6.13
447 461 2.489751 GCACATGCTAAACGGGCC 59.510 61.111 0.00 0.00 38.21 5.80
448 462 2.791256 CACATGCTAAACGGGCCG 59.209 61.111 27.06 27.06 0.00 6.13
449 463 2.437716 ACATGCTAAACGGGCCGG 60.438 61.111 31.78 13.56 0.00 6.13
450 464 3.209097 CATGCTAAACGGGCCGGG 61.209 66.667 31.78 17.40 0.00 5.73
493 507 4.748144 GTGCCTGGGCCTGAAGGG 62.748 72.222 12.58 4.03 41.09 3.95
532 546 2.394930 GGCACGGCCCAATTAAATTT 57.605 45.000 0.00 0.00 44.06 1.82
533 547 2.705730 GGCACGGCCCAATTAAATTTT 58.294 42.857 0.00 0.00 44.06 1.82
534 548 3.078097 GGCACGGCCCAATTAAATTTTT 58.922 40.909 0.00 0.00 44.06 1.94
566 580 8.644374 TTTTATGTATCCTAATATGGGCCAAC 57.356 34.615 11.89 0.35 0.00 3.77
567 581 5.858876 ATGTATCCTAATATGGGCCAACA 57.141 39.130 11.89 7.42 0.00 3.33
568 582 5.241403 TGTATCCTAATATGGGCCAACAG 57.759 43.478 11.89 5.14 0.00 3.16
569 583 3.814504 ATCCTAATATGGGCCAACAGG 57.185 47.619 11.89 14.64 0.00 4.00
570 584 2.498441 TCCTAATATGGGCCAACAGGT 58.502 47.619 11.89 0.00 0.00 4.00
571 585 3.671079 TCCTAATATGGGCCAACAGGTA 58.329 45.455 11.89 0.00 0.00 3.08
572 586 4.048600 TCCTAATATGGGCCAACAGGTAA 58.951 43.478 11.89 0.00 0.00 2.85
573 587 4.479056 TCCTAATATGGGCCAACAGGTAAA 59.521 41.667 11.89 0.00 0.00 2.01
574 588 5.044030 TCCTAATATGGGCCAACAGGTAAAA 60.044 40.000 11.89 0.00 0.00 1.52
575 589 5.659079 CCTAATATGGGCCAACAGGTAAAAA 59.341 40.000 11.89 0.00 0.00 1.94
576 590 6.326323 CCTAATATGGGCCAACAGGTAAAAAT 59.674 38.462 11.89 0.00 0.00 1.82
577 591 7.507616 CCTAATATGGGCCAACAGGTAAAAATA 59.492 37.037 11.89 0.00 0.00 1.40
578 592 6.976934 ATATGGGCCAACAGGTAAAAATAG 57.023 37.500 11.89 0.00 0.00 1.73
579 593 3.436243 TGGGCCAACAGGTAAAAATAGG 58.564 45.455 2.13 0.00 0.00 2.57
580 594 2.167693 GGGCCAACAGGTAAAAATAGGC 59.832 50.000 4.39 0.00 40.08 3.93
581 595 3.096852 GGCCAACAGGTAAAAATAGGCT 58.903 45.455 0.00 0.00 40.61 4.58
582 596 4.274978 GGCCAACAGGTAAAAATAGGCTA 58.725 43.478 0.00 0.00 40.61 3.93
583 597 4.707934 GGCCAACAGGTAAAAATAGGCTAA 59.292 41.667 0.00 0.00 40.61 3.09
584 598 5.186215 GGCCAACAGGTAAAAATAGGCTAAA 59.814 40.000 0.00 0.00 40.61 1.85
585 599 6.295405 GGCCAACAGGTAAAAATAGGCTAAAA 60.295 38.462 0.00 0.00 40.61 1.52
586 600 7.156000 GCCAACAGGTAAAAATAGGCTAAAAA 58.844 34.615 0.00 0.00 37.89 1.94
600 614 4.144418 AAAAACGCCCAGTACGCA 57.856 50.000 0.00 0.00 0.00 5.24
601 615 2.406205 AAAAACGCCCAGTACGCAA 58.594 47.368 0.00 0.00 0.00 4.85
602 616 0.739561 AAAAACGCCCAGTACGCAAA 59.260 45.000 0.00 0.00 0.00 3.68
603 617 0.739561 AAAACGCCCAGTACGCAAAA 59.260 45.000 0.00 0.00 0.00 2.44
604 618 0.955905 AAACGCCCAGTACGCAAAAT 59.044 45.000 0.00 0.00 0.00 1.82
605 619 1.810959 AACGCCCAGTACGCAAAATA 58.189 45.000 0.00 0.00 0.00 1.40
606 620 1.365699 ACGCCCAGTACGCAAAATAG 58.634 50.000 0.00 0.00 0.00 1.73
607 621 0.655733 CGCCCAGTACGCAAAATAGG 59.344 55.000 0.00 0.00 0.00 2.57
608 622 1.741055 CGCCCAGTACGCAAAATAGGA 60.741 52.381 0.00 0.00 0.00 2.94
609 623 1.940613 GCCCAGTACGCAAAATAGGAG 59.059 52.381 0.00 0.00 0.00 3.69
610 624 2.561569 CCCAGTACGCAAAATAGGAGG 58.438 52.381 0.00 0.00 0.00 4.30
611 625 2.093128 CCCAGTACGCAAAATAGGAGGT 60.093 50.000 0.00 0.00 0.00 3.85
612 626 3.133362 CCCAGTACGCAAAATAGGAGGTA 59.867 47.826 0.00 0.00 0.00 3.08
613 627 4.369182 CCAGTACGCAAAATAGGAGGTAG 58.631 47.826 0.00 0.00 0.00 3.18
614 628 4.098960 CCAGTACGCAAAATAGGAGGTAGA 59.901 45.833 0.00 0.00 0.00 2.59
615 629 5.221461 CCAGTACGCAAAATAGGAGGTAGAT 60.221 44.000 0.00 0.00 0.00 1.98
616 630 6.281405 CAGTACGCAAAATAGGAGGTAGATT 58.719 40.000 0.00 0.00 0.00 2.40
617 631 7.431249 CAGTACGCAAAATAGGAGGTAGATTA 58.569 38.462 0.00 0.00 0.00 1.75
618 632 7.595502 CAGTACGCAAAATAGGAGGTAGATTAG 59.404 40.741 0.00 0.00 0.00 1.73
619 633 6.481434 ACGCAAAATAGGAGGTAGATTAGT 57.519 37.500 0.00 0.00 0.00 2.24
620 634 6.281405 ACGCAAAATAGGAGGTAGATTAGTG 58.719 40.000 0.00 0.00 0.00 2.74
621 635 5.696724 CGCAAAATAGGAGGTAGATTAGTGG 59.303 44.000 0.00 0.00 0.00 4.00
622 636 5.998363 GCAAAATAGGAGGTAGATTAGTGGG 59.002 44.000 0.00 0.00 0.00 4.61
623 637 5.827326 AAATAGGAGGTAGATTAGTGGGC 57.173 43.478 0.00 0.00 0.00 5.36
624 638 2.104669 AGGAGGTAGATTAGTGGGCC 57.895 55.000 0.00 0.00 0.00 5.80
625 639 1.581149 AGGAGGTAGATTAGTGGGCCT 59.419 52.381 4.53 0.00 0.00 5.19
626 640 1.694696 GGAGGTAGATTAGTGGGCCTG 59.305 57.143 4.53 0.00 0.00 4.85
627 641 1.694696 GAGGTAGATTAGTGGGCCTGG 59.305 57.143 4.53 0.00 0.00 4.45
628 642 0.108774 GGTAGATTAGTGGGCCTGGC 59.891 60.000 11.05 11.05 0.00 4.85
629 643 0.249911 GTAGATTAGTGGGCCTGGCG 60.250 60.000 13.40 0.00 0.00 5.69
630 644 0.689745 TAGATTAGTGGGCCTGGCGT 60.690 55.000 13.40 0.00 0.00 5.68
631 645 1.819632 GATTAGTGGGCCTGGCGTG 60.820 63.158 13.40 0.00 0.00 5.34
632 646 3.995506 ATTAGTGGGCCTGGCGTGC 62.996 63.158 13.40 4.75 0.00 5.34
655 669 4.643387 GGCCGGCCCGATTAGCAT 62.643 66.667 36.64 0.00 0.00 3.79
656 670 2.345991 GCCGGCCCGATTAGCATA 59.654 61.111 18.11 0.00 0.00 3.14
657 671 2.033194 GCCGGCCCGATTAGCATAC 61.033 63.158 18.11 0.00 0.00 2.39
658 672 1.736645 CCGGCCCGATTAGCATACG 60.737 63.158 3.71 0.00 0.00 3.06
659 673 1.736645 CGGCCCGATTAGCATACGG 60.737 63.158 0.00 0.00 45.24 4.02
662 676 4.278956 CCGATTAGCATACGGGCC 57.721 61.111 0.00 0.00 42.48 5.80
663 677 1.369692 CCGATTAGCATACGGGCCA 59.630 57.895 4.39 0.00 42.48 5.36
664 678 0.036388 CCGATTAGCATACGGGCCAT 60.036 55.000 4.39 0.00 42.48 4.40
665 679 1.078709 CGATTAGCATACGGGCCATG 58.921 55.000 4.39 0.07 0.00 3.66
678 692 2.194056 CCATGCCTGGGCTGTAGG 59.806 66.667 13.05 5.66 42.51 3.18
683 697 3.720601 CCTGGGCTGTAGGCTGCA 61.721 66.667 4.90 4.90 40.70 4.41
684 698 2.124819 CTGGGCTGTAGGCTGCAG 60.125 66.667 25.88 25.88 40.70 4.41
689 703 3.494336 CTGTAGGCTGCAGCACGC 61.494 66.667 37.63 25.60 44.36 5.34
718 732 3.610637 GGCACGGCCCGTATAATAA 57.389 52.632 9.25 0.00 44.06 1.40
719 733 2.103537 GGCACGGCCCGTATAATAAT 57.896 50.000 9.25 0.00 44.06 1.28
720 734 2.004733 GGCACGGCCCGTATAATAATC 58.995 52.381 9.25 0.00 44.06 1.75
721 735 1.657094 GCACGGCCCGTATAATAATCG 59.343 52.381 9.25 0.00 38.32 3.34
722 736 2.927871 GCACGGCCCGTATAATAATCGT 60.928 50.000 9.25 0.00 38.32 3.73
723 737 2.664568 CACGGCCCGTATAATAATCGTG 59.335 50.000 9.25 0.00 38.32 4.35
724 738 1.657094 CGGCCCGTATAATAATCGTGC 59.343 52.381 0.00 0.00 0.00 5.34
725 739 2.004733 GGCCCGTATAATAATCGTGCC 58.995 52.381 0.00 0.00 40.23 5.01
726 740 2.354403 GGCCCGTATAATAATCGTGCCT 60.354 50.000 0.00 0.00 42.74 4.75
727 741 3.119029 GGCCCGTATAATAATCGTGCCTA 60.119 47.826 0.00 0.00 42.74 3.93
728 742 4.110482 GCCCGTATAATAATCGTGCCTAG 58.890 47.826 0.00 0.00 0.00 3.02
729 743 4.679662 CCCGTATAATAATCGTGCCTAGG 58.320 47.826 3.67 3.67 0.00 3.02
730 744 4.110482 CCGTATAATAATCGTGCCTAGGC 58.890 47.826 27.71 27.71 42.35 3.93
731 745 3.789756 CGTATAATAATCGTGCCTAGGCG 59.210 47.826 28.28 15.51 45.51 5.52
732 746 2.736144 TAATAATCGTGCCTAGGCGG 57.264 50.000 28.28 21.97 45.51 6.13
733 747 0.034896 AATAATCGTGCCTAGGCGGG 59.965 55.000 28.28 21.60 45.51 6.13
759 773 3.720494 TGCCAGGCACGATTAGGA 58.280 55.556 11.22 0.00 31.71 2.94
760 774 2.220953 TGCCAGGCACGATTAGGAT 58.779 52.632 11.22 0.00 31.71 3.24
761 775 0.179048 TGCCAGGCACGATTAGGATG 60.179 55.000 11.22 0.00 31.71 3.51
762 776 0.886490 GCCAGGCACGATTAGGATGG 60.886 60.000 6.55 0.00 0.00 3.51
763 777 0.250467 CCAGGCACGATTAGGATGGG 60.250 60.000 0.00 0.00 0.00 4.00
764 778 0.886490 CAGGCACGATTAGGATGGGC 60.886 60.000 0.00 0.00 0.00 5.36
765 779 1.600916 GGCACGATTAGGATGGGCC 60.601 63.158 0.00 0.00 0.00 5.80
766 780 1.961277 GCACGATTAGGATGGGCCG 60.961 63.158 0.00 0.00 43.43 6.13
767 781 1.445942 CACGATTAGGATGGGCCGT 59.554 57.895 0.00 0.00 43.43 5.68
768 782 0.880278 CACGATTAGGATGGGCCGTG 60.880 60.000 1.02 0.00 43.43 4.94
769 783 1.961277 CGATTAGGATGGGCCGTGC 60.961 63.158 9.57 9.57 43.43 5.34
806 820 3.006672 CCCGTTTGGCCAGCTATAG 57.993 57.895 5.11 0.00 0.00 1.31
847 861 0.988832 ATTGCGAGGGGGAGTTGTAA 59.011 50.000 0.00 0.00 0.00 2.41
849 863 1.078637 GCGAGGGGGAGTTGTAACC 60.079 63.158 0.00 0.00 0.00 2.85
850 864 1.217244 CGAGGGGGAGTTGTAACCG 59.783 63.158 0.00 0.00 0.00 4.44
851 865 1.252904 CGAGGGGGAGTTGTAACCGA 61.253 60.000 0.00 0.00 0.00 4.69
852 866 0.978907 GAGGGGGAGTTGTAACCGAA 59.021 55.000 0.00 0.00 0.00 4.30
853 867 1.558294 GAGGGGGAGTTGTAACCGAAT 59.442 52.381 0.00 0.00 0.00 3.34
854 868 1.990327 AGGGGGAGTTGTAACCGAATT 59.010 47.619 0.00 0.00 0.00 2.17
855 869 2.089201 GGGGGAGTTGTAACCGAATTG 58.911 52.381 0.00 0.00 0.00 2.32
856 870 2.553685 GGGGGAGTTGTAACCGAATTGT 60.554 50.000 0.00 0.00 0.00 2.71
882 896 3.210232 TGTGAGACTCGAGGGGTATAG 57.790 52.381 18.41 0.00 0.00 1.31
883 897 2.158652 TGTGAGACTCGAGGGGTATAGG 60.159 54.545 18.41 0.00 0.00 2.57
884 898 2.133520 TGAGACTCGAGGGGTATAGGT 58.866 52.381 18.41 0.00 0.00 3.08
885 899 3.072184 GTGAGACTCGAGGGGTATAGGTA 59.928 52.174 18.41 0.00 0.00 3.08
886 900 3.915073 TGAGACTCGAGGGGTATAGGTAT 59.085 47.826 18.41 0.00 0.00 2.73
887 901 5.046014 GTGAGACTCGAGGGGTATAGGTATA 60.046 48.000 18.41 0.00 0.00 1.47
1107 1142 1.222115 GACTGCCGAGACGTGCTTTT 61.222 55.000 0.00 0.00 0.00 2.27
1108 1143 0.814010 ACTGCCGAGACGTGCTTTTT 60.814 50.000 0.00 0.00 0.00 1.94
1232 1267 4.217118 TCCGTTCTAGACTTGACCTTGTAC 59.783 45.833 0.00 0.00 0.00 2.90
1239 1274 4.704965 AGACTTGACCTTGTACCTTGTTC 58.295 43.478 0.00 0.00 0.00 3.18
1240 1275 4.409247 AGACTTGACCTTGTACCTTGTTCT 59.591 41.667 0.00 0.00 0.00 3.01
1241 1276 5.104485 AGACTTGACCTTGTACCTTGTTCTT 60.104 40.000 0.00 0.00 0.00 2.52
1246 1284 8.528044 TTGACCTTGTACCTTGTTCTTTTATT 57.472 30.769 0.00 0.00 0.00 1.40
1278 1316 4.082136 AGCTTCTCGATTTCGTTAGGTTCT 60.082 41.667 0.00 0.00 40.80 3.01
1358 1400 2.552031 GTTTGTAGCCTCGAAGATCCC 58.448 52.381 0.00 0.00 33.89 3.85
1364 1406 1.437986 CCTCGAAGATCCCGTGGAC 59.562 63.158 16.56 0.00 41.57 4.02
1377 1419 0.319211 CGTGGACGCCAGTCTGTTTA 60.319 55.000 0.00 0.00 46.29 2.01
1378 1420 1.429463 GTGGACGCCAGTCTGTTTAG 58.571 55.000 0.00 0.00 46.29 1.85
1382 1424 0.672342 ACGCCAGTCTGTTTAGTCGT 59.328 50.000 0.00 0.00 0.00 4.34
1406 1448 4.835284 AAAACTTGTGATTTGGTTGGGT 57.165 36.364 0.00 0.00 0.00 4.51
1407 1449 4.400529 AAACTTGTGATTTGGTTGGGTC 57.599 40.909 0.00 0.00 0.00 4.46
1408 1450 1.953686 ACTTGTGATTTGGTTGGGTCG 59.046 47.619 0.00 0.00 0.00 4.79
1409 1451 1.953686 CTTGTGATTTGGTTGGGTCGT 59.046 47.619 0.00 0.00 0.00 4.34
1410 1452 1.600023 TGTGATTTGGTTGGGTCGTC 58.400 50.000 0.00 0.00 0.00 4.20
1411 1453 1.134068 TGTGATTTGGTTGGGTCGTCA 60.134 47.619 0.00 0.00 0.00 4.35
1412 1454 2.159382 GTGATTTGGTTGGGTCGTCAT 58.841 47.619 0.00 0.00 0.00 3.06
1413 1455 2.556622 GTGATTTGGTTGGGTCGTCATT 59.443 45.455 0.00 0.00 0.00 2.57
1414 1456 3.754323 GTGATTTGGTTGGGTCGTCATTA 59.246 43.478 0.00 0.00 0.00 1.90
1415 1457 4.006989 TGATTTGGTTGGGTCGTCATTAG 58.993 43.478 0.00 0.00 0.00 1.73
1416 1458 3.495434 TTTGGTTGGGTCGTCATTAGT 57.505 42.857 0.00 0.00 0.00 2.24
1417 1459 2.465860 TGGTTGGGTCGTCATTAGTG 57.534 50.000 0.00 0.00 0.00 2.74
1418 1460 1.695242 TGGTTGGGTCGTCATTAGTGT 59.305 47.619 0.00 0.00 0.00 3.55
1419 1461 2.898612 TGGTTGGGTCGTCATTAGTGTA 59.101 45.455 0.00 0.00 0.00 2.90
1420 1462 3.516300 TGGTTGGGTCGTCATTAGTGTAT 59.484 43.478 0.00 0.00 0.00 2.29
1421 1463 3.869246 GGTTGGGTCGTCATTAGTGTATG 59.131 47.826 0.00 0.00 0.00 2.39
1422 1464 3.173668 TGGGTCGTCATTAGTGTATGC 57.826 47.619 0.00 0.00 0.00 3.14
1423 1465 2.124903 GGGTCGTCATTAGTGTATGCG 58.875 52.381 0.00 0.00 0.00 4.73
1424 1466 2.223641 GGGTCGTCATTAGTGTATGCGA 60.224 50.000 0.00 0.00 34.30 5.10
1425 1467 3.441163 GGTCGTCATTAGTGTATGCGAA 58.559 45.455 0.00 0.00 36.54 4.70
1426 1468 4.049186 GGTCGTCATTAGTGTATGCGAAT 58.951 43.478 0.00 0.00 36.54 3.34
1427 1469 4.506654 GGTCGTCATTAGTGTATGCGAATT 59.493 41.667 0.00 0.00 36.54 2.17
1428 1470 5.423717 GTCGTCATTAGTGTATGCGAATTG 58.576 41.667 0.00 0.00 36.54 2.32
1429 1471 5.005394 GTCGTCATTAGTGTATGCGAATTGT 59.995 40.000 0.00 0.00 36.54 2.71
1430 1472 5.579119 TCGTCATTAGTGTATGCGAATTGTT 59.421 36.000 0.00 0.00 34.01 2.83
1431 1473 5.672426 CGTCATTAGTGTATGCGAATTGTTG 59.328 40.000 0.00 0.00 31.39 3.33
1432 1474 6.542852 GTCATTAGTGTATGCGAATTGTTGT 58.457 36.000 0.00 0.00 0.00 3.32
1433 1475 6.465781 GTCATTAGTGTATGCGAATTGTTGTG 59.534 38.462 0.00 0.00 0.00 3.33
1434 1476 6.370166 TCATTAGTGTATGCGAATTGTTGTGA 59.630 34.615 0.00 0.00 0.00 3.58
1435 1477 6.735678 TTAGTGTATGCGAATTGTTGTGAT 57.264 33.333 0.00 0.00 0.00 3.06
1436 1478 5.627499 AGTGTATGCGAATTGTTGTGATT 57.373 34.783 0.00 0.00 0.00 2.57
1437 1479 6.012658 AGTGTATGCGAATTGTTGTGATTT 57.987 33.333 0.00 0.00 0.00 2.17
1438 1480 5.858049 AGTGTATGCGAATTGTTGTGATTTG 59.142 36.000 0.00 0.00 0.00 2.32
1439 1481 5.060816 GTGTATGCGAATTGTTGTGATTTGG 59.939 40.000 0.00 0.00 0.00 3.28
1440 1482 3.724508 TGCGAATTGTTGTGATTTGGT 57.275 38.095 0.00 0.00 0.00 3.67
1441 1483 4.052159 TGCGAATTGTTGTGATTTGGTT 57.948 36.364 0.00 0.00 0.00 3.67
1442 1484 3.801050 TGCGAATTGTTGTGATTTGGTTG 59.199 39.130 0.00 0.00 0.00 3.77
1443 1485 3.184178 GCGAATTGTTGTGATTTGGTTGG 59.816 43.478 0.00 0.00 0.00 3.77
1444 1486 3.740321 CGAATTGTTGTGATTTGGTTGGG 59.260 43.478 0.00 0.00 0.00 4.12
1455 1497 3.495434 TTTGGTTGGGTCGTCATTAGT 57.505 42.857 0.00 0.00 0.00 2.24
1457 1499 1.695242 TGGTTGGGTCGTCATTAGTGT 59.305 47.619 0.00 0.00 0.00 3.55
1482 1524 3.247648 GCGAATTGTTATGATACACGGCT 59.752 43.478 0.00 0.00 0.00 5.52
1639 1685 8.220755 AGCACTTCTGTGTTATTAAAGAAACA 57.779 30.769 0.00 0.00 45.44 2.83
1669 1715 6.095021 TGCTTCATATACGGCGTTCTATATCT 59.905 38.462 21.24 0.00 0.00 1.98
1685 1731 1.376609 ATCTGATTTCCGTTGGCCGC 61.377 55.000 0.00 0.00 34.38 6.53
1763 1809 0.652592 CATGCATCGGACGAGAAACC 59.347 55.000 0.00 0.00 0.00 3.27
1838 1893 8.615878 TTATGCAGTTCTTAAGTCTAGCAAAA 57.384 30.769 15.32 7.68 34.15 2.44
1854 1909 4.050553 AGCAAAACGTTCCACAATTGATG 58.949 39.130 13.59 6.74 0.00 3.07
2051 2108 1.581934 CTTGGTTCTTGACGTGCAGA 58.418 50.000 0.00 0.00 0.00 4.26
2070 2127 6.145696 GTGCAGATACGTTCAAAGAGTACTTT 59.854 38.462 0.00 0.00 45.75 2.66
2091 2148 3.660959 TGGGAAGTACGGGGAGATAATT 58.339 45.455 0.00 0.00 0.00 1.40
2243 2300 2.291741 GCATGGTTCCTATTACTGCTGC 59.708 50.000 0.00 0.00 0.00 5.25
2249 2306 5.588648 TGGTTCCTATTACTGCTGCAATTAC 59.411 40.000 3.02 0.00 0.00 1.89
2290 2348 5.446143 TCATCGCTTTTCCTTGCTTTTTA 57.554 34.783 0.00 0.00 0.00 1.52
2291 2349 6.024552 TCATCGCTTTTCCTTGCTTTTTAT 57.975 33.333 0.00 0.00 0.00 1.40
2325 2388 9.829507 AGTCATATGAAGTTTAAGATCCTTGAG 57.170 33.333 7.07 0.00 0.00 3.02
2550 2616 8.031864 CCTACTGCTCTAACAGATGGTATTATG 58.968 40.741 0.00 0.00 40.25 1.90
2555 2621 7.710907 TGCTCTAACAGATGGTATTATGTGTTC 59.289 37.037 4.81 0.00 41.76 3.18
2599 2665 6.474140 TCGTTGCTCTGGATAATTAGGTTA 57.526 37.500 0.00 0.00 0.00 2.85
2611 2677 7.767198 TGGATAATTAGGTTAAAGTCCTCAACG 59.233 37.037 0.00 0.00 36.60 4.10
2616 2682 4.520179 AGGTTAAAGTCCTCAACGTGTTT 58.480 39.130 0.00 0.00 0.00 2.83
2823 2889 1.464997 GCCTTCGTTGGTGCTTTCTAG 59.535 52.381 0.00 0.00 0.00 2.43
2828 2894 3.650139 TCGTTGGTGCTTTCTAGACTTC 58.350 45.455 0.00 0.00 0.00 3.01
2848 2914 1.468736 CCGTGAGCCTAGTTTCGTACC 60.469 57.143 0.00 0.00 0.00 3.34
2852 2918 2.230508 TGAGCCTAGTTTCGTACCACAG 59.769 50.000 0.00 0.00 0.00 3.66
2872 2938 9.251440 ACCACAGACACTAATAATTAGTACAGA 57.749 33.333 0.00 0.00 44.32 3.41
2905 2971 6.006275 ACTTGGAGCTATCACACCATATTT 57.994 37.500 0.00 0.00 32.31 1.40
2960 3026 3.326588 TGTGTTCTTACATAGGTGGCAGT 59.673 43.478 0.00 0.00 36.50 4.40
3228 3321 4.806247 GCTACAGTAGTGCTTATGTTCCTG 59.194 45.833 9.42 0.00 0.00 3.86
3229 3322 4.207891 ACAGTAGTGCTTATGTTCCTGG 57.792 45.455 0.00 0.00 0.00 4.45
3230 3323 2.939103 CAGTAGTGCTTATGTTCCTGGC 59.061 50.000 0.00 0.00 0.00 4.85
3231 3324 2.571653 AGTAGTGCTTATGTTCCTGGCA 59.428 45.455 0.00 0.00 0.00 4.92
3232 3325 2.119801 AGTGCTTATGTTCCTGGCAG 57.880 50.000 7.75 7.75 33.47 4.85
3233 3326 0.453390 GTGCTTATGTTCCTGGCAGC 59.547 55.000 9.56 0.00 33.47 5.25
3234 3327 0.329261 TGCTTATGTTCCTGGCAGCT 59.671 50.000 9.56 0.00 0.00 4.24
3235 3328 1.559219 TGCTTATGTTCCTGGCAGCTA 59.441 47.619 9.56 0.00 0.00 3.32
3236 3329 1.943340 GCTTATGTTCCTGGCAGCTAC 59.057 52.381 9.56 9.51 0.00 3.58
3237 3330 2.680805 GCTTATGTTCCTGGCAGCTACA 60.681 50.000 18.17 18.17 0.00 2.74
3238 3331 2.988010 TATGTTCCTGGCAGCTACAG 57.012 50.000 19.80 9.94 35.74 2.74
3239 3332 0.987294 ATGTTCCTGGCAGCTACAGT 59.013 50.000 19.80 9.61 34.16 3.55
3240 3333 1.639722 TGTTCCTGGCAGCTACAGTA 58.360 50.000 9.56 0.00 34.16 2.74
3241 3334 1.550524 TGTTCCTGGCAGCTACAGTAG 59.449 52.381 9.56 2.85 34.16 2.57
3242 3335 1.550976 GTTCCTGGCAGCTACAGTAGT 59.449 52.381 9.56 0.00 34.16 2.73
3243 3336 1.186200 TCCTGGCAGCTACAGTAGTG 58.814 55.000 9.56 7.45 34.16 2.74
3244 3337 0.460987 CCTGGCAGCTACAGTAGTGC 60.461 60.000 19.20 19.20 34.16 4.40
3245 3338 0.534412 CTGGCAGCTACAGTAGTGCT 59.466 55.000 23.22 10.49 35.02 4.40
3246 3339 0.976641 TGGCAGCTACAGTAGTGCTT 59.023 50.000 23.22 3.78 35.02 3.91
3247 3340 2.166459 CTGGCAGCTACAGTAGTGCTTA 59.834 50.000 23.22 16.12 35.02 3.09
3248 3341 2.766263 TGGCAGCTACAGTAGTGCTTAT 59.234 45.455 23.22 0.76 35.02 1.73
3249 3342 3.126831 GGCAGCTACAGTAGTGCTTATG 58.873 50.000 23.22 10.57 35.02 1.90
3250 3343 3.430929 GGCAGCTACAGTAGTGCTTATGT 60.431 47.826 23.22 0.53 35.02 2.29
3251 3344 4.184629 GCAGCTACAGTAGTGCTTATGTT 58.815 43.478 19.73 0.00 32.37 2.71
3252 3345 4.268884 GCAGCTACAGTAGTGCTTATGTTC 59.731 45.833 19.73 0.00 32.37 3.18
3253 3346 4.806247 CAGCTACAGTAGTGCTTATGTTCC 59.194 45.833 9.42 0.00 32.37 3.62
3254 3347 4.712337 AGCTACAGTAGTGCTTATGTTCCT 59.288 41.667 9.42 0.00 31.19 3.36
3255 3348 4.806247 GCTACAGTAGTGCTTATGTTCCTG 59.194 45.833 9.42 0.00 0.00 3.86
3256 3349 4.207891 ACAGTAGTGCTTATGTTCCTGG 57.792 45.455 0.00 0.00 0.00 4.45
3257 3350 2.939103 CAGTAGTGCTTATGTTCCTGGC 59.061 50.000 0.00 0.00 0.00 4.85
3258 3351 2.571653 AGTAGTGCTTATGTTCCTGGCA 59.428 45.455 0.00 0.00 0.00 4.92
3259 3352 2.119801 AGTGCTTATGTTCCTGGCAG 57.880 50.000 7.75 7.75 33.47 4.85
3260 3353 0.453390 GTGCTTATGTTCCTGGCAGC 59.547 55.000 9.56 0.00 33.47 5.25
3261 3354 0.329261 TGCTTATGTTCCTGGCAGCT 59.671 50.000 9.56 0.00 0.00 4.24
3262 3355 1.559219 TGCTTATGTTCCTGGCAGCTA 59.441 47.619 9.56 0.00 0.00 3.32
3263 3356 1.943340 GCTTATGTTCCTGGCAGCTAC 59.057 52.381 9.56 9.51 0.00 3.58
3264 3357 2.680805 GCTTATGTTCCTGGCAGCTACA 60.681 50.000 18.17 18.17 0.00 2.74
3265 3358 2.988010 TATGTTCCTGGCAGCTACAG 57.012 50.000 19.80 9.94 35.74 2.74
3266 3359 0.987294 ATGTTCCTGGCAGCTACAGT 59.013 50.000 19.80 9.61 34.16 3.55
3267 3360 1.639722 TGTTCCTGGCAGCTACAGTA 58.360 50.000 9.56 0.00 34.16 2.74
3268 3361 1.550524 TGTTCCTGGCAGCTACAGTAG 59.449 52.381 9.56 2.85 34.16 2.57
3269 3362 1.550976 GTTCCTGGCAGCTACAGTAGT 59.449 52.381 9.56 0.00 34.16 2.73
3270 3363 1.186200 TCCTGGCAGCTACAGTAGTG 58.814 55.000 9.56 7.45 34.16 2.74
3271 3364 0.460987 CCTGGCAGCTACAGTAGTGC 60.461 60.000 19.20 19.20 34.16 4.40
3272 3365 0.534412 CTGGCAGCTACAGTAGTGCT 59.466 55.000 23.22 10.49 35.02 4.40
3273 3366 0.976641 TGGCAGCTACAGTAGTGCTT 59.023 50.000 23.22 3.78 35.02 3.91
3274 3367 2.166459 CTGGCAGCTACAGTAGTGCTTA 59.834 50.000 23.22 16.12 35.02 3.09
3275 3368 2.766263 TGGCAGCTACAGTAGTGCTTAT 59.234 45.455 23.22 0.76 35.02 1.73
3276 3369 3.126831 GGCAGCTACAGTAGTGCTTATG 58.873 50.000 23.22 10.57 35.02 1.90
3277 3370 3.430929 GGCAGCTACAGTAGTGCTTATGT 60.431 47.826 23.22 0.53 35.02 2.29
3278 3371 4.184629 GCAGCTACAGTAGTGCTTATGTT 58.815 43.478 19.73 0.00 32.37 2.71
3279 3372 4.268884 GCAGCTACAGTAGTGCTTATGTTC 59.731 45.833 19.73 0.00 32.37 3.18
3280 3373 4.806247 CAGCTACAGTAGTGCTTATGTTCC 59.194 45.833 9.42 0.00 32.37 3.62
3281 3374 4.712337 AGCTACAGTAGTGCTTATGTTCCT 59.288 41.667 9.42 0.00 31.19 3.36
3282 3375 4.806247 GCTACAGTAGTGCTTATGTTCCTG 59.194 45.833 9.42 0.00 0.00 3.86
3283 3376 4.207891 ACAGTAGTGCTTATGTTCCTGG 57.792 45.455 0.00 0.00 0.00 4.45
3284 3377 2.939103 CAGTAGTGCTTATGTTCCTGGC 59.061 50.000 0.00 0.00 0.00 4.85
3285 3378 2.571653 AGTAGTGCTTATGTTCCTGGCA 59.428 45.455 0.00 0.00 0.00 4.92
3286 3379 2.119801 AGTGCTTATGTTCCTGGCAG 57.880 50.000 7.75 7.75 33.47 4.85
3287 3380 0.453390 GTGCTTATGTTCCTGGCAGC 59.547 55.000 9.56 0.00 33.47 5.25
3288 3381 0.329261 TGCTTATGTTCCTGGCAGCT 59.671 50.000 9.56 0.00 0.00 4.24
3289 3382 1.559219 TGCTTATGTTCCTGGCAGCTA 59.441 47.619 9.56 0.00 0.00 3.32
3290 3383 1.943340 GCTTATGTTCCTGGCAGCTAC 59.057 52.381 9.56 9.51 0.00 3.58
3291 3384 2.680805 GCTTATGTTCCTGGCAGCTACA 60.681 50.000 18.17 18.17 0.00 2.74
3292 3385 2.988010 TATGTTCCTGGCAGCTACAG 57.012 50.000 19.80 9.94 35.74 2.74
3293 3386 0.987294 ATGTTCCTGGCAGCTACAGT 59.013 50.000 19.80 9.61 34.16 3.55
3294 3387 1.639722 TGTTCCTGGCAGCTACAGTA 58.360 50.000 9.56 0.00 34.16 2.74
3295 3388 1.550524 TGTTCCTGGCAGCTACAGTAG 59.449 52.381 9.56 2.85 34.16 2.57
3296 3389 1.550976 GTTCCTGGCAGCTACAGTAGT 59.449 52.381 9.56 0.00 34.16 2.73
3297 3390 1.186200 TCCTGGCAGCTACAGTAGTG 58.814 55.000 9.56 7.45 34.16 2.74
3298 3391 0.460987 CCTGGCAGCTACAGTAGTGC 60.461 60.000 19.20 19.20 34.16 4.40
3299 3392 0.534412 CTGGCAGCTACAGTAGTGCT 59.466 55.000 23.22 10.49 35.02 4.40
3300 3393 0.976641 TGGCAGCTACAGTAGTGCTT 59.023 50.000 23.22 3.78 35.02 3.91
3301 3394 2.166459 CTGGCAGCTACAGTAGTGCTTA 59.834 50.000 23.22 16.12 35.02 3.09
3302 3395 2.766263 TGGCAGCTACAGTAGTGCTTAT 59.234 45.455 23.22 0.76 35.02 1.73
3303 3396 3.181475 TGGCAGCTACAGTAGTGCTTATC 60.181 47.826 23.22 13.65 35.02 1.75
3304 3397 3.385577 GCAGCTACAGTAGTGCTTATCC 58.614 50.000 19.73 0.52 32.37 2.59
3305 3398 3.068873 GCAGCTACAGTAGTGCTTATCCT 59.931 47.826 19.73 2.43 32.37 3.24
3354 3447 2.425143 TGATGGAGCATTTGGAGGTC 57.575 50.000 0.00 0.00 0.00 3.85
3565 3658 2.033194 GTGTTAGGTCTGGCGTGGC 61.033 63.158 0.00 0.00 0.00 5.01
3706 3799 4.523943 AGATATCACCTGCAGCTAGAAGAG 59.476 45.833 8.66 0.00 0.00 2.85
3830 3951 5.202765 AGATGCCATGTTCCATGTGAAATA 58.797 37.500 3.75 0.00 33.94 1.40
3912 4034 2.917713 TTGCCAACCTATCCACCATT 57.082 45.000 0.00 0.00 0.00 3.16
3964 4086 6.543465 TGCTCTAGGTTGGTGATCATTTAATG 59.457 38.462 0.00 0.00 0.00 1.90
4042 4164 3.736094 TGTCAGTTAATCCTCTCCCCAT 58.264 45.455 0.00 0.00 0.00 4.00
4058 4180 1.930656 CATGGGGGTTGGAGAGGGT 60.931 63.158 0.00 0.00 0.00 4.34
4141 4277 8.038944 GGAAATTTCCCTTTGGTTTATAGGAAC 58.961 37.037 24.44 0.00 41.62 3.62
4160 4296 3.983044 ACGGGATTCCTATTCCTATGC 57.017 47.619 2.01 0.00 33.53 3.14
4210 4346 6.795098 ATAAACATTACGCAAGACTCAACA 57.205 33.333 0.00 0.00 43.62 3.33
4257 4393 3.562176 CCAAGATTTAACACCCCTCAGCT 60.562 47.826 0.00 0.00 0.00 4.24
4419 4566 8.539674 GCACTTTTTCACGTCTTTCAATTATTT 58.460 29.630 0.00 0.00 0.00 1.40
4467 4615 7.201679 CGCTTCTGAGAATGGAACTAAATTGAT 60.202 37.037 0.00 0.00 0.00 2.57
4553 4709 8.040727 CGATTATCCATGACCCAAAGTATATCA 58.959 37.037 0.00 0.00 0.00 2.15
4554 4710 9.167311 GATTATCCATGACCCAAAGTATATCAC 57.833 37.037 0.00 0.00 0.00 3.06
4555 4711 5.966853 TCCATGACCCAAAGTATATCACA 57.033 39.130 0.00 0.00 0.00 3.58
4556 4712 5.680619 TCCATGACCCAAAGTATATCACAC 58.319 41.667 0.00 0.00 0.00 3.82
4557 4713 4.821805 CCATGACCCAAAGTATATCACACC 59.178 45.833 0.00 0.00 0.00 4.16
4558 4714 5.397899 CCATGACCCAAAGTATATCACACCT 60.398 44.000 0.00 0.00 0.00 4.00
4559 4715 6.183361 CCATGACCCAAAGTATATCACACCTA 60.183 42.308 0.00 0.00 0.00 3.08
4599 4755 1.986882 CCAGTCACCAAAGAAGCCTT 58.013 50.000 0.00 0.00 0.00 4.35
4600 4756 2.310538 CCAGTCACCAAAGAAGCCTTT 58.689 47.619 0.00 0.00 42.98 3.11
4608 4764 2.896745 AAAGAAGCCTTTGTTGCAGG 57.103 45.000 0.00 0.00 40.83 4.85
4609 4765 2.071778 AAGAAGCCTTTGTTGCAGGA 57.928 45.000 0.00 0.00 32.41 3.86
4610 4766 1.322442 AGAAGCCTTTGTTGCAGGAC 58.678 50.000 0.00 0.00 32.41 3.85
4611 4767 1.133668 AGAAGCCTTTGTTGCAGGACT 60.134 47.619 0.00 0.00 32.41 3.85
4612 4768 1.683385 GAAGCCTTTGTTGCAGGACTT 59.317 47.619 0.00 0.00 33.23 3.01
4613 4769 1.035139 AGCCTTTGTTGCAGGACTTG 58.965 50.000 0.00 0.00 32.41 3.16
4614 4770 0.032540 GCCTTTGTTGCAGGACTTGG 59.967 55.000 0.00 0.00 32.41 3.61
4615 4771 0.032540 CCTTTGTTGCAGGACTTGGC 59.967 55.000 0.00 0.00 32.41 4.52
4616 4772 1.035139 CTTTGTTGCAGGACTTGGCT 58.965 50.000 0.00 0.00 0.00 4.75
4617 4773 1.410153 CTTTGTTGCAGGACTTGGCTT 59.590 47.619 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.752650 TCCTCGTTCTTACCTCAATCTCTA 58.247 41.667 0.00 0.00 0.00 2.43
22 24 9.178758 AGTTCATGGGAAACATACTCTATTTTC 57.821 33.333 0.00 0.00 37.84 2.29
39 41 3.382546 GGATTTGTGATGGAGTTCATGGG 59.617 47.826 0.00 0.00 35.97 4.00
113 115 5.640732 ACTAAATTTGCTATTGTCGGCAAG 58.359 37.500 9.01 0.00 46.75 4.01
121 123 5.638657 TGCTTGCCAACTAAATTTGCTATTG 59.361 36.000 0.00 0.41 0.00 1.90
130 133 6.818142 GGATTTGTTATGCTTGCCAACTAAAT 59.182 34.615 8.09 10.32 0.00 1.40
147 150 6.937436 AAAGTGAACTAAGACGGATTTGTT 57.063 33.333 2.40 2.40 32.11 2.83
210 213 1.091537 TAGGCACATTTAGTTGGCGC 58.908 50.000 0.00 0.00 0.00 6.53
361 375 3.936453 CGTTTGGCCAGCTATAGTTTACA 59.064 43.478 5.11 0.00 0.00 2.41
362 376 3.311596 CCGTTTGGCCAGCTATAGTTTAC 59.688 47.826 5.11 0.00 0.00 2.01
363 377 3.537580 CCGTTTGGCCAGCTATAGTTTA 58.462 45.455 5.11 0.00 0.00 2.01
364 378 2.365582 CCGTTTGGCCAGCTATAGTTT 58.634 47.619 5.11 0.00 0.00 2.66
365 379 1.408266 CCCGTTTGGCCAGCTATAGTT 60.408 52.381 5.11 0.00 0.00 2.24
366 380 0.180406 CCCGTTTGGCCAGCTATAGT 59.820 55.000 5.11 0.00 0.00 2.12
367 381 3.006672 CCCGTTTGGCCAGCTATAG 57.993 57.895 5.11 0.00 0.00 1.31
377 391 2.203153 CTATCCCGGCCCGTTTGG 60.203 66.667 0.85 0.00 37.09 3.28
378 392 1.078001 AACTATCCCGGCCCGTTTG 60.078 57.895 0.85 0.00 0.00 2.93
379 393 1.078001 CAACTATCCCGGCCCGTTT 60.078 57.895 0.85 0.00 0.00 3.60
380 394 2.587889 CAACTATCCCGGCCCGTT 59.412 61.111 0.85 0.00 0.00 4.44
381 395 3.476419 CCAACTATCCCGGCCCGT 61.476 66.667 0.85 0.00 0.00 5.28
382 396 4.250305 CCCAACTATCCCGGCCCG 62.250 72.222 0.00 0.00 0.00 6.13
383 397 4.581093 GCCCAACTATCCCGGCCC 62.581 72.222 0.00 0.00 35.23 5.80
385 399 4.929707 CGGCCCAACTATCCCGGC 62.930 72.222 0.00 0.00 40.85 6.13
387 401 4.929707 GCCGGCCCAACTATCCCG 62.930 72.222 18.11 0.00 40.39 5.14
388 402 4.581093 GGCCGGCCCAACTATCCC 62.581 72.222 36.64 5.01 0.00 3.85
422 436 3.892740 TTAGCATGTGCCGTGCCGT 62.893 57.895 13.65 2.33 46.38 5.68
423 437 2.685829 TTTAGCATGTGCCGTGCCG 61.686 57.895 13.65 0.00 46.38 5.69
424 438 1.154035 GTTTAGCATGTGCCGTGCC 60.154 57.895 13.65 0.00 46.38 5.01
425 439 1.511887 CGTTTAGCATGTGCCGTGC 60.512 57.895 10.38 10.38 45.65 5.34
426 440 1.134487 CCGTTTAGCATGTGCCGTG 59.866 57.895 0.57 0.00 43.38 4.94
427 441 2.038269 CCCGTTTAGCATGTGCCGT 61.038 57.895 0.57 0.00 43.38 5.68
428 442 2.791256 CCCGTTTAGCATGTGCCG 59.209 61.111 0.57 0.00 43.38 5.69
429 443 2.489751 GCCCGTTTAGCATGTGCC 59.510 61.111 0.57 0.00 43.38 5.01
430 444 2.489751 GGCCCGTTTAGCATGTGC 59.510 61.111 0.00 0.00 42.49 4.57
431 445 2.760159 CCGGCCCGTTTAGCATGTG 61.760 63.158 0.85 0.00 0.00 3.21
432 446 2.437716 CCGGCCCGTTTAGCATGT 60.438 61.111 0.85 0.00 0.00 3.21
433 447 3.209097 CCCGGCCCGTTTAGCATG 61.209 66.667 0.85 0.00 0.00 4.06
476 490 4.748144 CCCTTCAGGCCCAGGCAC 62.748 72.222 11.50 0.00 44.11 5.01
540 554 9.084533 GTTGGCCCATATTAGGATACATAAAAA 57.915 33.333 0.00 0.00 41.41 1.94
541 555 8.228206 TGTTGGCCCATATTAGGATACATAAAA 58.772 33.333 0.00 0.00 41.41 1.52
542 556 7.760607 TGTTGGCCCATATTAGGATACATAAA 58.239 34.615 0.00 0.00 41.41 1.40
543 557 7.336475 TGTTGGCCCATATTAGGATACATAA 57.664 36.000 0.00 0.00 41.41 1.90
544 558 6.069673 CCTGTTGGCCCATATTAGGATACATA 60.070 42.308 0.00 0.00 41.41 2.29
545 559 5.281193 CCTGTTGGCCCATATTAGGATACAT 60.281 44.000 0.00 0.00 41.41 2.29
546 560 4.042809 CCTGTTGGCCCATATTAGGATACA 59.957 45.833 0.00 0.00 41.41 2.29
547 561 4.042934 ACCTGTTGGCCCATATTAGGATAC 59.957 45.833 0.00 0.00 36.63 2.24
548 562 4.247814 ACCTGTTGGCCCATATTAGGATA 58.752 43.478 0.00 0.00 36.63 2.59
549 563 3.063650 ACCTGTTGGCCCATATTAGGAT 58.936 45.455 0.00 0.00 36.63 3.24
550 564 2.498441 ACCTGTTGGCCCATATTAGGA 58.502 47.619 0.00 0.00 36.63 2.94
551 565 4.447138 TTACCTGTTGGCCCATATTAGG 57.553 45.455 0.00 1.97 36.63 2.69
552 566 6.783708 TTTTTACCTGTTGGCCCATATTAG 57.216 37.500 0.00 0.00 36.63 1.73
553 567 7.507616 CCTATTTTTACCTGTTGGCCCATATTA 59.492 37.037 0.00 0.00 36.63 0.98
554 568 6.326323 CCTATTTTTACCTGTTGGCCCATATT 59.674 38.462 0.00 0.00 36.63 1.28
555 569 5.838521 CCTATTTTTACCTGTTGGCCCATAT 59.161 40.000 0.00 0.00 36.63 1.78
556 570 5.205056 CCTATTTTTACCTGTTGGCCCATA 58.795 41.667 0.00 0.00 36.63 2.74
557 571 4.030216 CCTATTTTTACCTGTTGGCCCAT 58.970 43.478 0.00 0.00 36.63 4.00
558 572 3.436243 CCTATTTTTACCTGTTGGCCCA 58.564 45.455 0.00 0.00 36.63 5.36
559 573 2.167693 GCCTATTTTTACCTGTTGGCCC 59.832 50.000 0.00 0.00 36.63 5.80
560 574 3.096852 AGCCTATTTTTACCTGTTGGCC 58.903 45.455 0.00 0.00 39.90 5.36
561 575 5.907866 TTAGCCTATTTTTACCTGTTGGC 57.092 39.130 0.00 0.00 39.40 4.52
583 597 0.739561 TTTGCGTACTGGGCGTTTTT 59.260 45.000 0.00 0.00 0.00 1.94
584 598 0.739561 TTTTGCGTACTGGGCGTTTT 59.260 45.000 0.00 0.00 0.00 2.43
585 599 0.955905 ATTTTGCGTACTGGGCGTTT 59.044 45.000 0.00 0.00 0.00 3.60
586 600 1.735571 CTATTTTGCGTACTGGGCGTT 59.264 47.619 0.00 0.00 0.00 4.84
587 601 1.365699 CTATTTTGCGTACTGGGCGT 58.634 50.000 0.00 0.00 0.00 5.68
588 602 0.655733 CCTATTTTGCGTACTGGGCG 59.344 55.000 0.00 0.00 0.00 6.13
589 603 1.940613 CTCCTATTTTGCGTACTGGGC 59.059 52.381 0.00 0.00 0.00 5.36
590 604 2.093128 ACCTCCTATTTTGCGTACTGGG 60.093 50.000 0.00 0.00 0.00 4.45
591 605 3.261981 ACCTCCTATTTTGCGTACTGG 57.738 47.619 0.00 0.00 0.00 4.00
592 606 5.258456 TCTACCTCCTATTTTGCGTACTG 57.742 43.478 0.00 0.00 0.00 2.74
593 607 6.481434 AATCTACCTCCTATTTTGCGTACT 57.519 37.500 0.00 0.00 0.00 2.73
594 608 7.381678 CACTAATCTACCTCCTATTTTGCGTAC 59.618 40.741 0.00 0.00 0.00 3.67
595 609 7.431249 CACTAATCTACCTCCTATTTTGCGTA 58.569 38.462 0.00 0.00 0.00 4.42
596 610 6.281405 CACTAATCTACCTCCTATTTTGCGT 58.719 40.000 0.00 0.00 0.00 5.24
597 611 5.696724 CCACTAATCTACCTCCTATTTTGCG 59.303 44.000 0.00 0.00 0.00 4.85
598 612 5.998363 CCCACTAATCTACCTCCTATTTTGC 59.002 44.000 0.00 0.00 0.00 3.68
599 613 5.998363 GCCCACTAATCTACCTCCTATTTTG 59.002 44.000 0.00 0.00 0.00 2.44
600 614 5.073280 GGCCCACTAATCTACCTCCTATTTT 59.927 44.000 0.00 0.00 0.00 1.82
601 615 4.597940 GGCCCACTAATCTACCTCCTATTT 59.402 45.833 0.00 0.00 0.00 1.40
602 616 4.140423 AGGCCCACTAATCTACCTCCTATT 60.140 45.833 0.00 0.00 0.00 1.73
603 617 3.406498 AGGCCCACTAATCTACCTCCTAT 59.594 47.826 0.00 0.00 0.00 2.57
604 618 2.795960 AGGCCCACTAATCTACCTCCTA 59.204 50.000 0.00 0.00 0.00 2.94
605 619 1.581149 AGGCCCACTAATCTACCTCCT 59.419 52.381 0.00 0.00 0.00 3.69
606 620 1.694696 CAGGCCCACTAATCTACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
607 621 1.694696 CCAGGCCCACTAATCTACCTC 59.305 57.143 0.00 0.00 0.00 3.85
608 622 1.807814 CCAGGCCCACTAATCTACCT 58.192 55.000 0.00 0.00 0.00 3.08
609 623 0.108774 GCCAGGCCCACTAATCTACC 59.891 60.000 0.00 0.00 0.00 3.18
610 624 0.249911 CGCCAGGCCCACTAATCTAC 60.250 60.000 5.63 0.00 0.00 2.59
611 625 0.689745 ACGCCAGGCCCACTAATCTA 60.690 55.000 5.63 0.00 0.00 1.98
612 626 1.995626 ACGCCAGGCCCACTAATCT 60.996 57.895 5.63 0.00 0.00 2.40
613 627 1.819632 CACGCCAGGCCCACTAATC 60.820 63.158 5.63 0.00 0.00 1.75
614 628 2.272146 CACGCCAGGCCCACTAAT 59.728 61.111 5.63 0.00 0.00 1.73
615 629 4.715523 GCACGCCAGGCCCACTAA 62.716 66.667 5.63 0.00 0.00 2.24
638 652 3.248446 TATGCTAATCGGGCCGGCC 62.248 63.158 38.57 38.57 0.00 6.13
639 653 2.033194 GTATGCTAATCGGGCCGGC 61.033 63.158 27.98 21.18 0.00 6.13
640 654 1.736645 CGTATGCTAATCGGGCCGG 60.737 63.158 27.98 11.17 0.00 6.13
641 655 1.736645 CCGTATGCTAATCGGGCCG 60.737 63.158 22.51 22.51 40.49 6.13
642 656 4.278956 CCGTATGCTAATCGGGCC 57.721 61.111 0.00 0.00 40.49 5.80
645 659 0.036388 ATGGCCCGTATGCTAATCGG 60.036 55.000 0.00 0.00 43.30 4.18
646 660 1.078709 CATGGCCCGTATGCTAATCG 58.921 55.000 0.00 0.00 0.00 3.34
647 661 0.804989 GCATGGCCCGTATGCTAATC 59.195 55.000 17.12 0.00 45.64 1.75
648 662 2.946947 GCATGGCCCGTATGCTAAT 58.053 52.632 17.12 0.00 45.64 1.73
649 663 4.473643 GCATGGCCCGTATGCTAA 57.526 55.556 17.12 0.00 45.64 3.09
666 680 3.694058 CTGCAGCCTACAGCCCAGG 62.694 68.421 0.00 0.00 45.47 4.45
667 681 2.124819 CTGCAGCCTACAGCCCAG 60.125 66.667 0.00 0.00 45.47 4.45
672 686 3.494336 GCGTGCTGCAGCCTACAG 61.494 66.667 34.64 21.75 45.45 2.74
701 715 1.657094 CGATTATTATACGGGCCGTGC 59.343 52.381 39.80 16.99 41.39 5.34
702 716 2.664568 CACGATTATTATACGGGCCGTG 59.335 50.000 39.80 22.32 41.39 4.94
703 717 2.950433 CACGATTATTATACGGGCCGT 58.050 47.619 35.91 35.91 44.35 5.68
707 721 4.679662 CCTAGGCACGATTATTATACGGG 58.320 47.826 0.00 0.00 0.00 5.28
708 722 4.110482 GCCTAGGCACGATTATTATACGG 58.890 47.826 29.33 0.00 41.49 4.02
709 723 3.789756 CGCCTAGGCACGATTATTATACG 59.210 47.826 32.47 7.82 42.06 3.06
710 724 4.110482 CCGCCTAGGCACGATTATTATAC 58.890 47.826 32.47 0.00 42.06 1.47
711 725 3.131577 CCCGCCTAGGCACGATTATTATA 59.868 47.826 32.47 0.00 42.06 0.98
712 726 2.093658 CCCGCCTAGGCACGATTATTAT 60.094 50.000 32.47 0.00 42.06 1.28
713 727 1.274167 CCCGCCTAGGCACGATTATTA 59.726 52.381 32.47 0.00 42.06 0.98
714 728 0.034896 CCCGCCTAGGCACGATTATT 59.965 55.000 32.47 0.00 42.06 1.40
715 729 1.671742 CCCGCCTAGGCACGATTAT 59.328 57.895 32.47 0.00 42.06 1.28
716 730 3.134879 CCCGCCTAGGCACGATTA 58.865 61.111 32.47 0.00 42.06 1.75
742 756 0.179048 CATCCTAATCGTGCCTGGCA 60.179 55.000 19.30 19.30 35.60 4.92
743 757 0.886490 CCATCCTAATCGTGCCTGGC 60.886 60.000 12.87 12.87 0.00 4.85
744 758 0.250467 CCCATCCTAATCGTGCCTGG 60.250 60.000 0.00 0.00 0.00 4.45
745 759 0.886490 GCCCATCCTAATCGTGCCTG 60.886 60.000 0.00 0.00 0.00 4.85
746 760 1.451936 GCCCATCCTAATCGTGCCT 59.548 57.895 0.00 0.00 0.00 4.75
747 761 1.600916 GGCCCATCCTAATCGTGCC 60.601 63.158 0.00 0.00 0.00 5.01
748 762 1.961277 CGGCCCATCCTAATCGTGC 60.961 63.158 0.00 0.00 0.00 5.34
749 763 0.880278 CACGGCCCATCCTAATCGTG 60.880 60.000 0.00 0.00 41.09 4.35
750 764 1.445942 CACGGCCCATCCTAATCGT 59.554 57.895 0.00 0.00 0.00 3.73
751 765 1.961277 GCACGGCCCATCCTAATCG 60.961 63.158 0.00 0.00 0.00 3.34
752 766 1.600916 GGCACGGCCCATCCTAATC 60.601 63.158 0.00 0.00 44.06 1.75
753 767 2.515901 GGCACGGCCCATCCTAAT 59.484 61.111 0.00 0.00 44.06 1.73
788 802 0.180406 ACTATAGCTGGCCAAACGGG 59.820 55.000 7.01 0.00 40.85 5.28
789 803 1.299541 CACTATAGCTGGCCAAACGG 58.700 55.000 7.01 0.00 0.00 4.44
790 804 2.024176 ACACTATAGCTGGCCAAACG 57.976 50.000 7.01 0.00 0.00 3.60
791 805 4.095932 GGTTTACACTATAGCTGGCCAAAC 59.904 45.833 7.01 1.16 0.00 2.93
792 806 4.266714 GGTTTACACTATAGCTGGCCAAA 58.733 43.478 7.01 0.00 0.00 3.28
793 807 3.680475 CGGTTTACACTATAGCTGGCCAA 60.680 47.826 7.01 0.00 0.00 4.52
794 808 2.159014 CGGTTTACACTATAGCTGGCCA 60.159 50.000 4.71 4.71 0.00 5.36
795 809 2.480845 CGGTTTACACTATAGCTGGCC 58.519 52.381 0.00 0.00 0.00 5.36
796 810 1.865340 GCGGTTTACACTATAGCTGGC 59.135 52.381 0.00 0.00 0.00 4.85
797 811 2.102588 AGGCGGTTTACACTATAGCTGG 59.897 50.000 0.00 0.00 0.00 4.85
798 812 3.068307 AGAGGCGGTTTACACTATAGCTG 59.932 47.826 0.00 0.42 0.00 4.24
799 813 3.297736 AGAGGCGGTTTACACTATAGCT 58.702 45.455 0.00 0.00 0.00 3.32
800 814 3.552478 GGAGAGGCGGTTTACACTATAGC 60.552 52.174 0.00 0.00 0.00 2.97
801 815 3.635373 TGGAGAGGCGGTTTACACTATAG 59.365 47.826 0.00 0.00 0.00 1.31
802 816 3.382546 GTGGAGAGGCGGTTTACACTATA 59.617 47.826 0.00 0.00 0.00 1.31
803 817 2.167900 GTGGAGAGGCGGTTTACACTAT 59.832 50.000 0.00 0.00 0.00 2.12
804 818 1.547372 GTGGAGAGGCGGTTTACACTA 59.453 52.381 0.00 0.00 0.00 2.74
805 819 0.320697 GTGGAGAGGCGGTTTACACT 59.679 55.000 0.00 0.00 0.00 3.55
806 820 0.034337 TGTGGAGAGGCGGTTTACAC 59.966 55.000 0.00 0.00 0.00 2.90
847 861 3.432252 GTCTCACAATTCGACAATTCGGT 59.568 43.478 0.00 0.00 45.90 4.69
850 864 4.621460 TCGAGTCTCACAATTCGACAATTC 59.379 41.667 0.00 0.00 37.18 2.17
851 865 4.556233 TCGAGTCTCACAATTCGACAATT 58.444 39.130 0.00 0.00 37.18 2.32
852 866 4.169508 CTCGAGTCTCACAATTCGACAAT 58.830 43.478 3.62 0.00 37.18 2.71
853 867 3.565516 CTCGAGTCTCACAATTCGACAA 58.434 45.455 3.62 0.00 37.18 3.18
854 868 2.095212 CCTCGAGTCTCACAATTCGACA 60.095 50.000 12.31 0.00 37.18 4.35
855 869 2.520979 CCTCGAGTCTCACAATTCGAC 58.479 52.381 12.31 0.00 37.18 4.20
856 870 1.472878 CCCTCGAGTCTCACAATTCGA 59.527 52.381 12.31 0.00 39.48 3.71
882 896 2.174360 GGACGGGGAGGTGTATATACC 58.826 57.143 10.56 10.56 41.17 2.73
883 897 1.815003 CGGACGGGGAGGTGTATATAC 59.185 57.143 5.89 5.89 0.00 1.47
884 898 1.887956 GCGGACGGGGAGGTGTATATA 60.888 57.143 0.00 0.00 0.00 0.86
885 899 1.183676 GCGGACGGGGAGGTGTATAT 61.184 60.000 0.00 0.00 0.00 0.86
886 900 1.829533 GCGGACGGGGAGGTGTATA 60.830 63.158 0.00 0.00 0.00 1.47
887 901 3.152400 GCGGACGGGGAGGTGTAT 61.152 66.667 0.00 0.00 0.00 2.29
907 921 2.058595 GCCGGAACTCTAGGCTGGA 61.059 63.158 5.05 0.00 46.83 3.86
1232 1267 3.057596 TGCGGCAGAATAAAAGAACAAGG 60.058 43.478 0.00 0.00 0.00 3.61
1239 1274 2.927553 AGCTTGCGGCAGAATAAAAG 57.072 45.000 1.67 0.00 44.79 2.27
1240 1275 2.819608 AGAAGCTTGCGGCAGAATAAAA 59.180 40.909 2.10 0.00 44.79 1.52
1241 1276 2.420022 GAGAAGCTTGCGGCAGAATAAA 59.580 45.455 2.10 0.00 44.79 1.40
1246 1284 2.230994 ATCGAGAAGCTTGCGGCAGA 62.231 55.000 2.10 0.00 44.79 4.26
1339 1381 1.136305 CGGGATCTTCGAGGCTACAAA 59.864 52.381 3.54 0.00 0.00 2.83
1358 1400 0.319211 TAAACAGACTGGCGTCCACG 60.319 55.000 7.51 0.00 41.16 4.94
1364 1406 2.624316 TACGACTAAACAGACTGGCG 57.376 50.000 7.51 0.00 0.00 5.69
1405 1447 5.005394 ACAATTCGCATACACTAATGACGAC 59.995 40.000 0.00 0.00 36.15 4.34
1406 1448 5.106442 ACAATTCGCATACACTAATGACGA 58.894 37.500 0.00 0.00 35.30 4.20
1407 1449 5.389642 ACAATTCGCATACACTAATGACG 57.610 39.130 0.00 0.00 0.00 4.35
1408 1450 6.465781 CACAACAATTCGCATACACTAATGAC 59.534 38.462 0.00 0.00 0.00 3.06
1409 1451 6.370166 TCACAACAATTCGCATACACTAATGA 59.630 34.615 0.00 0.00 0.00 2.57
1410 1452 6.541969 TCACAACAATTCGCATACACTAATG 58.458 36.000 0.00 0.00 0.00 1.90
1411 1453 6.735678 TCACAACAATTCGCATACACTAAT 57.264 33.333 0.00 0.00 0.00 1.73
1412 1454 6.735678 ATCACAACAATTCGCATACACTAA 57.264 33.333 0.00 0.00 0.00 2.24
1413 1455 6.735678 AATCACAACAATTCGCATACACTA 57.264 33.333 0.00 0.00 0.00 2.74
1414 1456 5.627499 AATCACAACAATTCGCATACACT 57.373 34.783 0.00 0.00 0.00 3.55
1415 1457 5.060816 CCAAATCACAACAATTCGCATACAC 59.939 40.000 0.00 0.00 0.00 2.90
1416 1458 5.159925 CCAAATCACAACAATTCGCATACA 58.840 37.500 0.00 0.00 0.00 2.29
1417 1459 5.160641 ACCAAATCACAACAATTCGCATAC 58.839 37.500 0.00 0.00 0.00 2.39
1418 1460 5.384063 ACCAAATCACAACAATTCGCATA 57.616 34.783 0.00 0.00 0.00 3.14
1419 1461 4.255833 ACCAAATCACAACAATTCGCAT 57.744 36.364 0.00 0.00 0.00 4.73
1420 1462 3.724508 ACCAAATCACAACAATTCGCA 57.275 38.095 0.00 0.00 0.00 5.10
1421 1463 3.184178 CCAACCAAATCACAACAATTCGC 59.816 43.478 0.00 0.00 0.00 4.70
1422 1464 3.740321 CCCAACCAAATCACAACAATTCG 59.260 43.478 0.00 0.00 0.00 3.34
1423 1465 4.702831 ACCCAACCAAATCACAACAATTC 58.297 39.130 0.00 0.00 0.00 2.17
1424 1466 4.702831 GACCCAACCAAATCACAACAATT 58.297 39.130 0.00 0.00 0.00 2.32
1425 1467 3.243704 CGACCCAACCAAATCACAACAAT 60.244 43.478 0.00 0.00 0.00 2.71
1426 1468 2.099921 CGACCCAACCAAATCACAACAA 59.900 45.455 0.00 0.00 0.00 2.83
1427 1469 1.678627 CGACCCAACCAAATCACAACA 59.321 47.619 0.00 0.00 0.00 3.33
1428 1470 1.679153 ACGACCCAACCAAATCACAAC 59.321 47.619 0.00 0.00 0.00 3.32
1429 1471 1.950909 GACGACCCAACCAAATCACAA 59.049 47.619 0.00 0.00 0.00 3.33
1430 1472 1.134068 TGACGACCCAACCAAATCACA 60.134 47.619 0.00 0.00 0.00 3.58
1431 1473 1.600023 TGACGACCCAACCAAATCAC 58.400 50.000 0.00 0.00 0.00 3.06
1432 1474 2.577606 ATGACGACCCAACCAAATCA 57.422 45.000 0.00 0.00 0.00 2.57
1433 1475 4.007659 ACTAATGACGACCCAACCAAATC 58.992 43.478 0.00 0.00 0.00 2.17
1434 1476 3.756434 CACTAATGACGACCCAACCAAAT 59.244 43.478 0.00 0.00 0.00 2.32
1435 1477 3.142951 CACTAATGACGACCCAACCAAA 58.857 45.455 0.00 0.00 0.00 3.28
1436 1478 2.105134 ACACTAATGACGACCCAACCAA 59.895 45.455 0.00 0.00 0.00 3.67
1437 1479 1.695242 ACACTAATGACGACCCAACCA 59.305 47.619 0.00 0.00 0.00 3.67
1438 1480 2.467566 ACACTAATGACGACCCAACC 57.532 50.000 0.00 0.00 0.00 3.77
1439 1481 3.308866 GCATACACTAATGACGACCCAAC 59.691 47.826 0.00 0.00 0.00 3.77
1440 1482 3.527533 GCATACACTAATGACGACCCAA 58.472 45.455 0.00 0.00 0.00 4.12
1441 1483 2.480587 CGCATACACTAATGACGACCCA 60.481 50.000 0.00 0.00 32.08 4.51
1442 1484 2.124903 CGCATACACTAATGACGACCC 58.875 52.381 0.00 0.00 32.08 4.46
1443 1485 3.074504 TCGCATACACTAATGACGACC 57.925 47.619 0.00 0.00 33.57 4.79
1444 1486 5.005394 ACAATTCGCATACACTAATGACGAC 59.995 40.000 0.00 0.00 36.15 4.34
1455 1497 6.074034 CCGTGTATCATAACAATTCGCATACA 60.074 38.462 0.00 0.00 0.00 2.29
1457 1499 5.107259 GCCGTGTATCATAACAATTCGCATA 60.107 40.000 0.00 0.00 0.00 3.14
1482 1524 4.444306 CCTCCCTTCATATCTAACCGCAAA 60.444 45.833 0.00 0.00 0.00 3.68
1639 1685 4.893424 ACGCCGTATATGAAGCAATTTT 57.107 36.364 0.00 0.00 0.00 1.82
1669 1715 3.059386 GGCGGCCAACGGAAATCA 61.059 61.111 15.62 0.00 44.51 2.57
1685 1731 0.317269 GCAAATCCGACGATGCATGG 60.317 55.000 2.46 5.24 38.63 3.66
1763 1809 3.153676 TCCCACAATGTACATACGACG 57.846 47.619 9.21 0.00 0.00 5.12
1823 1871 5.235616 TGTGGAACGTTTTGCTAGACTTAAG 59.764 40.000 0.46 0.00 42.39 1.85
1831 1879 4.902443 TCAATTGTGGAACGTTTTGCTA 57.098 36.364 0.46 0.00 42.39 3.49
1838 1893 3.882888 AGTGAACATCAATTGTGGAACGT 59.117 39.130 5.13 0.00 42.39 3.99
1941 1998 2.286294 GCTAACTCATCATCAAGCACCG 59.714 50.000 0.00 0.00 0.00 4.94
2070 2127 2.852714 TTATCTCCCCGTACTTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2091 2148 4.385825 GGTCCTTCATTATTACCGCATCA 58.614 43.478 0.00 0.00 0.00 3.07
2243 2300 5.449588 GCTCCCATGTGAACTGATGTAATTG 60.450 44.000 0.00 0.00 0.00 2.32
2249 2306 2.286872 GAGCTCCCATGTGAACTGATG 58.713 52.381 0.87 0.00 0.00 3.07
2291 2349 9.990360 TCTTAAACTTCATATGACTTGTGTACA 57.010 29.630 4.48 0.00 0.00 2.90
2346 2409 6.879458 AGAAACCGCATTAAAGATAGAACTGT 59.121 34.615 0.00 0.00 0.00 3.55
2445 2508 6.826741 CCTTCGGGATAGTCCTTTTAATTTCA 59.173 38.462 0.00 0.00 36.57 2.69
2599 2665 7.987649 TGTTAAATAAACACGTTGAGGACTTT 58.012 30.769 0.00 0.00 43.22 2.66
2611 2677 9.191995 CCTTGAATTCACCTGTTAAATAAACAC 57.808 33.333 7.89 0.00 43.22 3.32
2616 2682 8.934023 AAGTCCTTGAATTCACCTGTTAAATA 57.066 30.769 7.89 0.00 0.00 1.40
2753 2819 8.630054 TCTTATTGCCTTTCTTAGCTAACAAA 57.370 30.769 0.86 4.39 0.00 2.83
2828 2894 1.468736 GGTACGAAACTAGGCTCACGG 60.469 57.143 0.00 0.00 0.00 4.94
2848 2914 9.517609 GGTCTGTACTAATTATTAGTGTCTGTG 57.482 37.037 23.33 10.31 45.58 3.66
2852 2918 8.910944 TGGAGGTCTGTACTAATTATTAGTGTC 58.089 37.037 23.33 16.94 45.58 3.67
2891 2957 6.461370 GCAAATCAGGCAAATATGGTGTGATA 60.461 38.462 0.00 0.00 0.00 2.15
2905 2971 1.896220 ACGAAAGAGCAAATCAGGCA 58.104 45.000 0.00 0.00 0.00 4.75
3228 3321 2.961526 TAAGCACTACTGTAGCTGCC 57.038 50.000 25.08 14.91 38.86 4.85
3229 3322 3.786635 ACATAAGCACTACTGTAGCTGC 58.213 45.455 23.09 23.09 38.86 5.25
3230 3323 4.806247 GGAACATAAGCACTACTGTAGCTG 59.194 45.833 14.55 12.38 38.86 4.24
3231 3324 4.712337 AGGAACATAAGCACTACTGTAGCT 59.288 41.667 14.55 5.30 41.03 3.32
3232 3325 4.806247 CAGGAACATAAGCACTACTGTAGC 59.194 45.833 14.55 2.93 0.00 3.58
3233 3326 5.352284 CCAGGAACATAAGCACTACTGTAG 58.648 45.833 13.13 13.13 0.00 2.74
3234 3327 4.382685 GCCAGGAACATAAGCACTACTGTA 60.383 45.833 0.00 0.00 0.00 2.74
3235 3328 3.619979 GCCAGGAACATAAGCACTACTGT 60.620 47.826 0.00 0.00 0.00 3.55
3236 3329 2.939103 GCCAGGAACATAAGCACTACTG 59.061 50.000 0.00 0.00 0.00 2.74
3237 3330 2.571653 TGCCAGGAACATAAGCACTACT 59.428 45.455 0.00 0.00 0.00 2.57
3238 3331 2.939103 CTGCCAGGAACATAAGCACTAC 59.061 50.000 0.00 0.00 0.00 2.73
3239 3332 2.680805 GCTGCCAGGAACATAAGCACTA 60.681 50.000 0.00 0.00 0.00 2.74
3240 3333 1.952367 GCTGCCAGGAACATAAGCACT 60.952 52.381 0.00 0.00 0.00 4.40
3241 3334 0.453390 GCTGCCAGGAACATAAGCAC 59.547 55.000 0.00 0.00 0.00 4.40
3242 3335 0.329261 AGCTGCCAGGAACATAAGCA 59.671 50.000 0.00 0.00 33.08 3.91
3243 3336 1.943340 GTAGCTGCCAGGAACATAAGC 59.057 52.381 0.00 0.00 0.00 3.09
3244 3337 3.201290 CTGTAGCTGCCAGGAACATAAG 58.799 50.000 0.00 0.00 0.00 1.73
3245 3338 2.571653 ACTGTAGCTGCCAGGAACATAA 59.428 45.455 16.70 0.00 34.16 1.90
3246 3339 2.187958 ACTGTAGCTGCCAGGAACATA 58.812 47.619 16.70 0.00 34.16 2.29
3247 3340 0.987294 ACTGTAGCTGCCAGGAACAT 59.013 50.000 16.70 0.00 34.16 2.71
3248 3341 1.550524 CTACTGTAGCTGCCAGGAACA 59.449 52.381 16.70 2.17 34.16 3.18
3249 3342 1.550976 ACTACTGTAGCTGCCAGGAAC 59.449 52.381 14.55 0.00 34.16 3.62
3250 3343 1.550524 CACTACTGTAGCTGCCAGGAA 59.449 52.381 14.55 6.36 34.16 3.36
3251 3344 1.186200 CACTACTGTAGCTGCCAGGA 58.814 55.000 14.55 9.41 34.16 3.86
3252 3345 0.460987 GCACTACTGTAGCTGCCAGG 60.461 60.000 21.41 5.45 34.16 4.45
3253 3346 0.534412 AGCACTACTGTAGCTGCCAG 59.466 55.000 25.08 12.27 37.20 4.85
3254 3347 0.976641 AAGCACTACTGTAGCTGCCA 59.023 50.000 25.08 0.00 38.86 4.92
3255 3348 2.961526 TAAGCACTACTGTAGCTGCC 57.038 50.000 25.08 14.91 38.86 4.85
3256 3349 3.786635 ACATAAGCACTACTGTAGCTGC 58.213 45.455 23.09 23.09 38.86 5.25
3257 3350 4.806247 GGAACATAAGCACTACTGTAGCTG 59.194 45.833 14.55 12.38 38.86 4.24
3258 3351 4.712337 AGGAACATAAGCACTACTGTAGCT 59.288 41.667 14.55 5.30 41.03 3.32
3259 3352 4.806247 CAGGAACATAAGCACTACTGTAGC 59.194 45.833 14.55 2.93 0.00 3.58
3260 3353 5.352284 CCAGGAACATAAGCACTACTGTAG 58.648 45.833 13.13 13.13 0.00 2.74
3261 3354 4.382685 GCCAGGAACATAAGCACTACTGTA 60.383 45.833 0.00 0.00 0.00 2.74
3262 3355 3.619979 GCCAGGAACATAAGCACTACTGT 60.620 47.826 0.00 0.00 0.00 3.55
3263 3356 2.939103 GCCAGGAACATAAGCACTACTG 59.061 50.000 0.00 0.00 0.00 2.74
3264 3357 2.571653 TGCCAGGAACATAAGCACTACT 59.428 45.455 0.00 0.00 0.00 2.57
3265 3358 2.939103 CTGCCAGGAACATAAGCACTAC 59.061 50.000 0.00 0.00 0.00 2.73
3266 3359 2.680805 GCTGCCAGGAACATAAGCACTA 60.681 50.000 0.00 0.00 0.00 2.74
3267 3360 1.952367 GCTGCCAGGAACATAAGCACT 60.952 52.381 0.00 0.00 0.00 4.40
3268 3361 0.453390 GCTGCCAGGAACATAAGCAC 59.547 55.000 0.00 0.00 0.00 4.40
3269 3362 0.329261 AGCTGCCAGGAACATAAGCA 59.671 50.000 0.00 0.00 33.08 3.91
3270 3363 1.943340 GTAGCTGCCAGGAACATAAGC 59.057 52.381 0.00 0.00 0.00 3.09
3271 3364 3.201290 CTGTAGCTGCCAGGAACATAAG 58.799 50.000 0.00 0.00 0.00 1.73
3272 3365 2.571653 ACTGTAGCTGCCAGGAACATAA 59.428 45.455 16.70 0.00 34.16 1.90
3273 3366 2.187958 ACTGTAGCTGCCAGGAACATA 58.812 47.619 16.70 0.00 34.16 2.29
3274 3367 0.987294 ACTGTAGCTGCCAGGAACAT 59.013 50.000 16.70 0.00 34.16 2.71
3275 3368 1.550524 CTACTGTAGCTGCCAGGAACA 59.449 52.381 16.70 2.17 34.16 3.18
3276 3369 1.550976 ACTACTGTAGCTGCCAGGAAC 59.449 52.381 14.55 0.00 34.16 3.62
3277 3370 1.550524 CACTACTGTAGCTGCCAGGAA 59.449 52.381 14.55 6.36 34.16 3.36
3278 3371 1.186200 CACTACTGTAGCTGCCAGGA 58.814 55.000 14.55 9.41 34.16 3.86
3279 3372 0.460987 GCACTACTGTAGCTGCCAGG 60.461 60.000 21.41 5.45 34.16 4.45
3280 3373 0.534412 AGCACTACTGTAGCTGCCAG 59.466 55.000 25.08 12.27 37.20 4.85
3281 3374 0.976641 AAGCACTACTGTAGCTGCCA 59.023 50.000 25.08 0.00 38.86 4.92
3282 3375 2.961526 TAAGCACTACTGTAGCTGCC 57.038 50.000 25.08 14.91 38.86 4.85
3283 3376 3.068873 AGGATAAGCACTACTGTAGCTGC 59.931 47.826 23.09 23.09 38.86 5.25
3284 3377 4.500545 CCAGGATAAGCACTACTGTAGCTG 60.501 50.000 14.55 12.38 38.86 4.24
3285 3378 3.639094 CCAGGATAAGCACTACTGTAGCT 59.361 47.826 14.55 5.30 41.03 3.32
3286 3379 3.385111 ACCAGGATAAGCACTACTGTAGC 59.615 47.826 14.55 2.93 0.00 3.58
3287 3380 4.645136 TCACCAGGATAAGCACTACTGTAG 59.355 45.833 13.13 13.13 0.00 2.74
3288 3381 4.401519 GTCACCAGGATAAGCACTACTGTA 59.598 45.833 0.00 0.00 0.00 2.74
3289 3382 3.195825 GTCACCAGGATAAGCACTACTGT 59.804 47.826 0.00 0.00 0.00 3.55
3290 3383 3.449018 AGTCACCAGGATAAGCACTACTG 59.551 47.826 0.00 0.00 0.00 2.74
3291 3384 3.714144 AGTCACCAGGATAAGCACTACT 58.286 45.455 0.00 0.00 0.00 2.57
3292 3385 5.793030 ATAGTCACCAGGATAAGCACTAC 57.207 43.478 0.00 0.00 0.00 2.73
3293 3386 6.611785 ACTATAGTCACCAGGATAAGCACTA 58.388 40.000 0.00 0.00 0.00 2.74
3294 3387 5.459505 ACTATAGTCACCAGGATAAGCACT 58.540 41.667 0.00 0.00 0.00 4.40
3295 3388 5.793030 ACTATAGTCACCAGGATAAGCAC 57.207 43.478 0.00 0.00 0.00 4.40
3296 3389 5.477291 GCTACTATAGTCACCAGGATAAGCA 59.523 44.000 9.12 0.00 0.00 3.91
3297 3390 5.392165 CGCTACTATAGTCACCAGGATAAGC 60.392 48.000 9.12 7.69 0.00 3.09
3298 3391 5.124138 CCGCTACTATAGTCACCAGGATAAG 59.876 48.000 9.12 0.00 0.00 1.73
3299 3392 5.008331 CCGCTACTATAGTCACCAGGATAA 58.992 45.833 9.12 0.00 0.00 1.75
3300 3393 4.586884 CCGCTACTATAGTCACCAGGATA 58.413 47.826 9.12 0.00 0.00 2.59
3301 3394 3.422796 CCGCTACTATAGTCACCAGGAT 58.577 50.000 9.12 0.00 0.00 3.24
3302 3395 2.860009 CCGCTACTATAGTCACCAGGA 58.140 52.381 9.12 0.00 0.00 3.86
3303 3396 1.269998 GCCGCTACTATAGTCACCAGG 59.730 57.143 9.12 8.31 0.00 4.45
3304 3397 2.231529 AGCCGCTACTATAGTCACCAG 58.768 52.381 9.12 2.18 0.00 4.00
3305 3398 2.359981 AGCCGCTACTATAGTCACCA 57.640 50.000 9.12 0.00 0.00 4.17
3354 3447 2.057316 GAGCGACGATTCTCCATGATG 58.943 52.381 0.00 0.00 0.00 3.07
3565 3658 1.967066 CCCTAGCACCATAGAGTCCAG 59.033 57.143 0.00 0.00 0.00 3.86
3706 3799 3.671702 GCAAACTAAGCAGATCACAAGGC 60.672 47.826 0.00 0.00 0.00 4.35
3815 3936 5.887598 ATAGCAAGCTATTTCACATGGAACA 59.112 36.000 8.71 0.00 38.35 3.18
3830 3951 3.545703 AGCAAAACCGATATAGCAAGCT 58.454 40.909 0.00 0.00 0.00 3.74
3912 4034 5.534207 AGGATCAACAATTGAAAACTGCA 57.466 34.783 13.59 0.00 43.95 4.41
4042 4164 0.103823 TAAACCCTCTCCAACCCCCA 60.104 55.000 0.00 0.00 0.00 4.96
4141 4277 3.866651 CTGCATAGGAATAGGAATCCCG 58.133 50.000 0.00 0.00 37.71 5.14
4160 4296 6.748132 TCCTTTGAAAAAGTTAGCAATCCTG 58.252 36.000 0.00 0.00 0.00 3.86
4220 4356 5.779241 AATCTTGGTTCACAGGATAGGAA 57.221 39.130 0.00 0.00 44.25 3.36
4257 4393 1.354368 GTTTGGTGGGGATGGAAGAGA 59.646 52.381 0.00 0.00 0.00 3.10
4366 4513 6.582677 TTAAAATGTTACACACATCAGGGG 57.417 37.500 0.00 0.00 46.23 4.79
4368 4515 9.289303 GCTTATTAAAATGTTACACACATCAGG 57.711 33.333 0.00 0.00 46.23 3.86
4419 4566 4.569943 GGAGACATTTAGTTCACAGCAGA 58.430 43.478 0.00 0.00 0.00 4.26
4467 4615 4.457257 TCAACCATTGAACGCATGAATACA 59.543 37.500 0.00 0.00 36.59 2.29
4510 4660 9.391006 TGGATAATCGTGCTTCTATTAACTTTT 57.609 29.630 0.00 0.00 0.00 2.27
4511 4661 8.958119 TGGATAATCGTGCTTCTATTAACTTT 57.042 30.769 0.00 0.00 0.00 2.66
4531 4687 7.450074 GTGTGATATACTTTGGGTCATGGATA 58.550 38.462 0.00 0.00 0.00 2.59
4553 4709 7.886629 TCTACGATAATTAGGTGTTAGGTGT 57.113 36.000 0.00 0.00 0.00 4.16
4554 4710 7.381678 GCTTCTACGATAATTAGGTGTTAGGTG 59.618 40.741 0.00 0.00 0.00 4.00
4555 4711 7.432059 GCTTCTACGATAATTAGGTGTTAGGT 58.568 38.462 0.00 0.00 0.00 3.08
4556 4712 6.867293 GGCTTCTACGATAATTAGGTGTTAGG 59.133 42.308 0.00 0.00 0.00 2.69
4557 4713 7.431249 TGGCTTCTACGATAATTAGGTGTTAG 58.569 38.462 0.00 0.00 0.00 2.34
4558 4714 7.069085 ACTGGCTTCTACGATAATTAGGTGTTA 59.931 37.037 0.00 0.00 0.00 2.41
4559 4715 6.127140 ACTGGCTTCTACGATAATTAGGTGTT 60.127 38.462 0.00 0.00 0.00 3.32
4599 4755 2.229792 CTAAGCCAAGTCCTGCAACAA 58.770 47.619 0.00 0.00 0.00 2.83
4600 4756 1.545428 CCTAAGCCAAGTCCTGCAACA 60.545 52.381 0.00 0.00 0.00 3.33
4601 4757 1.168714 CCTAAGCCAAGTCCTGCAAC 58.831 55.000 0.00 0.00 0.00 4.17
4602 4758 1.064003 TCCTAAGCCAAGTCCTGCAA 58.936 50.000 0.00 0.00 0.00 4.08
4603 4759 1.065199 CATCCTAAGCCAAGTCCTGCA 60.065 52.381 0.00 0.00 0.00 4.41
4604 4760 1.673168 CATCCTAAGCCAAGTCCTGC 58.327 55.000 0.00 0.00 0.00 4.85
4605 4761 1.133976 CCCATCCTAAGCCAAGTCCTG 60.134 57.143 0.00 0.00 0.00 3.86
4606 4762 1.216990 CCCATCCTAAGCCAAGTCCT 58.783 55.000 0.00 0.00 0.00 3.85
4607 4763 1.141858 CTCCCATCCTAAGCCAAGTCC 59.858 57.143 0.00 0.00 0.00 3.85
4608 4764 2.119495 TCTCCCATCCTAAGCCAAGTC 58.881 52.381 0.00 0.00 0.00 3.01
4609 4765 2.270434 TCTCCCATCCTAAGCCAAGT 57.730 50.000 0.00 0.00 0.00 3.16
4610 4766 3.652057 TTTCTCCCATCCTAAGCCAAG 57.348 47.619 0.00 0.00 0.00 3.61
4611 4767 3.563479 GGTTTTCTCCCATCCTAAGCCAA 60.563 47.826 0.00 0.00 0.00 4.52
4612 4768 2.025321 GGTTTTCTCCCATCCTAAGCCA 60.025 50.000 0.00 0.00 0.00 4.75
4613 4769 2.025321 TGGTTTTCTCCCATCCTAAGCC 60.025 50.000 0.00 0.00 0.00 4.35
4614 4770 3.017442 GTGGTTTTCTCCCATCCTAAGC 58.983 50.000 0.00 0.00 33.76 3.09
4615 4771 3.055385 TCGTGGTTTTCTCCCATCCTAAG 60.055 47.826 0.00 0.00 33.76 2.18
4616 4772 2.907696 TCGTGGTTTTCTCCCATCCTAA 59.092 45.455 0.00 0.00 33.76 2.69
4617 4773 2.542550 TCGTGGTTTTCTCCCATCCTA 58.457 47.619 0.00 0.00 33.76 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.