AutoCloner

Multiple sequence alignment - TraesCS6B01G320300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G320300	chr6B	100.000	2213	0	0	1	2213	567710692	567712904	0.000000e+00	4087.0
1	TraesCS6B01G320300	chr6B	79.208	202	35	7	1015	1214	213467273	213467077	1.380000e-27	134.0
2	TraesCS6B01G320300	chr6B	78.713	202	36	5	1015	1214	567611657	567611461	6.410000e-26	128.0
3	TraesCS6B01G320300	chr6D	96.607	1120	28	1	95	1214	379334637	379333528	0.000000e+00	1849.0
4	TraesCS6B01G320300	chr6D	94.019	418	23	2	1798	2213	379333535	379333118	1.110000e-177	632.0
5	TraesCS6B01G320300	chr6D	91.786	280	23	0	1273	1552	36112959	36112680	7.410000e-105	390.0
6	TraesCS6B01G320300	chr6D	78.713	202	36	5	1015	1214	379339126	379339322	6.410000e-26	128.0
7	TraesCS6B01G320300	chr6A	94.224	1108	61	1	110	1214	521880523	521881630	0.000000e+00	1688.0
8	TraesCS6B01G320300	chr6A	94.626	949	42	1	266	1214	521857856	521858795	0.000000e+00	1461.0
9	TraesCS6B01G320300	chr6A	94.679	545	28	1	1254	1798	586300102	586300645	0.000000e+00	845.0
10	TraesCS6B01G320300	chr6A	88.679	424	26	9	1798	2213	521858788	521859197	4.240000e-137	497.0
11	TraesCS6B01G320300	chr6A	88.000	425	30	8	1798	2213	521881623	521882035	1.190000e-132	483.0
12	TraesCS6B01G320300	chr6A	92.565	269	11	1	110	378	521857604	521857863	5.770000e-101	377.0
13	TraesCS6B01G320300	chr6A	78.218	202	37	5	1015	1214	521648900	521648704	2.980000e-24	122.0
14	TraesCS6B01G320300	chr6A	92.727	55	1	3	1212	1264	586300039	586300092	2.360000e-10	76.8
15	TraesCS6B01G320300	chr2B	97.985	546	11	0	1253	1798	76907695	76907150	0.000000e+00	948.0
16	TraesCS6B01G320300	chr2B	97.170	530	15	0	1268	1797	182964181	182964710	0.000000e+00	896.0
17	TraesCS6B01G320300	chr2B	94.689	546	27	2	1253	1798	377780705	377781248	0.000000e+00	846.0
18	TraesCS6B01G320300	chr2B	100.000	38	0	0	1217	1254	76907751	76907714	1.100000e-08	71.3
19	TraesCS6B01G320300	chr1A	97.798	545	12	0	1253	1797	570446924	570447468	0.000000e+00	941.0
20	TraesCS6B01G320300	chr1A	93.750	48	3	0	1217	1264	550704681	550704728	3.050000e-09	73.1
21	TraesCS6B01G320300	chr2A	97.436	546	13	1	1253	1798	202889337	202888793	0.000000e+00	929.0
22	TraesCS6B01G320300	chr2A	94.139	546	32	0	1253	1798	62363705	62364250	0.000000e+00	832.0
23	TraesCS6B01G320300	chr2A	93.621	533	26	5	1273	1797	763918759	763918227	0.000000e+00	789.0
24	TraesCS6B01G320300	chr7A	95.772	544	23	0	1253	1796	191825671	191826214	0.000000e+00	878.0
25	TraesCS6B01G320300	chr7B	94.128	545	32	0	1253	1797	646607717	646607173	0.000000e+00	830.0
26	TraesCS6B01G320300	chr5D	90.257	544	31	8	1273	1797	360981913	360981373	0.000000e+00	691.0
27	TraesCS6B01G320300	chr4D	92.857	280	19	1	1273	1552	163886191	163885913	2.650000e-109	405.0
28	TraesCS6B01G320300	chr2D	92.171	281	20	2	1273	1552	6112958	6113237	1.590000e-106	396.0
29	TraesCS6B01G320300	chr3B	91.319	288	25	0	1265	1552	32987505	32987792	5.730000e-106	394.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G320300	chr6B	567710692	567712904	2212	False	4087.000000	4087	100.000000	1	2213	1	chr6B.!!$F1	2212
1	TraesCS6B01G320300	chr6D	379333118	379334637	1519	True	1240.500000	1849	95.313000	95	2213	2	chr6D.!!$R2	2118
2	TraesCS6B01G320300	chr6A	521880523	521882035	1512	False	1085.500000	1688	91.112000	110	2213	2	chr6A.!!$F2	2103
3	TraesCS6B01G320300	chr6A	521857604	521859197	1593	False	778.333333	1461	91.956667	110	2213	3	chr6A.!!$F1	2103
4	TraesCS6B01G320300	chr6A	586300039	586300645	606	False	460.900000	845	93.703000	1212	1798	2	chr6A.!!$F3	586
5	TraesCS6B01G320300	chr2B	182964181	182964710	529	False	896.000000	896	97.170000	1268	1797	1	chr2B.!!$F1	529
6	TraesCS6B01G320300	chr2B	377780705	377781248	543	False	846.000000	846	94.689000	1253	1798	1	chr2B.!!$F2	545
7	TraesCS6B01G320300	chr2B	76907150	76907751	601	True	509.650000	948	98.992500	1217	1798	2	chr2B.!!$R1	581
8	TraesCS6B01G320300	chr1A	570446924	570447468	544	False	941.000000	941	97.798000	1253	1797	1	chr1A.!!$F2	544
9	TraesCS6B01G320300	chr2A	202888793	202889337	544	True	929.000000	929	97.436000	1253	1798	1	chr2A.!!$R1	545
10	TraesCS6B01G320300	chr2A	62363705	62364250	545	False	832.000000	832	94.139000	1253	1798	1	chr2A.!!$F1	545
11	TraesCS6B01G320300	chr2A	763918227	763918759	532	True	789.000000	789	93.621000	1273	1797	1	chr2A.!!$R2	524
12	TraesCS6B01G320300	chr7A	191825671	191826214	543	False	878.000000	878	95.772000	1253	1796	1	chr7A.!!$F1	543
13	TraesCS6B01G320300	chr7B	646607173	646607717	544	True	830.000000	830	94.128000	1253	1797	1	chr7B.!!$R1	544
14	TraesCS6B01G320300	chr5D	360981373	360981913	540	True	691.000000	691	90.257000	1273	1797	1	chr5D.!!$R1	524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
380	489	0.039074	CGGAAGACTGCTCTCGTTGT	60.039	55.0	0.0	0.0	0.0	3.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2056	2212	1.446907	CTGTGAGTCTGGGATGCAAC	58.553	55.0	0.0	0.0	0.0	4.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	3.747735	TAACACCCCGCATCCAAAA	57.252	47.368	0.00	0.00	0.00	2.44
19	20	1.249407	TAACACCCCGCATCCAAAAC	58.751	50.000	0.00	0.00	0.00	2.43
20	21	1.468506	AACACCCCGCATCCAAAACC	61.469	55.000	0.00	0.00	0.00	3.27
21	22	2.283604	ACCCCGCATCCAAAACCC	60.284	61.111	0.00	0.00	0.00	4.11
22	23	3.074369	CCCCGCATCCAAAACCCC	61.074	66.667	0.00	0.00	0.00	4.95
23	24	2.037208	CCCGCATCCAAAACCCCT	59.963	61.111	0.00	0.00	0.00	4.79
24	25	2.052104	CCCGCATCCAAAACCCCTC	61.052	63.158	0.00	0.00	0.00	4.30
25	26	2.052104	CCGCATCCAAAACCCCTCC	61.052	63.158	0.00	0.00	0.00	4.30
26	27	2.406616	CGCATCCAAAACCCCTCCG	61.407	63.158	0.00	0.00	0.00	4.63
27	28	1.304134	GCATCCAAAACCCCTCCGT	60.304	57.895	0.00	0.00	0.00	4.69
28	29	0.898326	GCATCCAAAACCCCTCCGTT	60.898	55.000	0.00	0.00	0.00	4.44
29	30	1.627864	CATCCAAAACCCCTCCGTTT	58.372	50.000	0.00	0.00	37.56	3.60
30	31	1.272212	CATCCAAAACCCCTCCGTTTG	59.728	52.381	0.00	0.00	36.12	2.93
31	32	0.259356	TCCAAAACCCCTCCGTTTGT	59.741	50.000	0.00	0.00	36.12	2.83
32	33	0.387565	CCAAAACCCCTCCGTTTGTG	59.612	55.000	0.00	0.00	36.12	3.33
33	34	0.249280	CAAAACCCCTCCGTTTGTGC	60.249	55.000	0.00	0.00	36.12	4.57
34	35	0.684805	AAAACCCCTCCGTTTGTGCA	60.685	50.000	0.00	0.00	36.12	4.57
35	36	0.684805	AAACCCCTCCGTTTGTGCAA	60.685	50.000	0.00	0.00	34.68	4.08
36	37	0.469144	AACCCCTCCGTTTGTGCAAT	60.469	50.000	0.00	0.00	0.00	3.56
37	38	0.469144	ACCCCTCCGTTTGTGCAATT	60.469	50.000	0.00	0.00	0.00	2.32
38	39	1.202952	ACCCCTCCGTTTGTGCAATTA	60.203	47.619	0.00	0.00	0.00	1.40
39	40	1.201414	CCCCTCCGTTTGTGCAATTAC	59.799	52.381	0.00	0.00	0.00	1.89
40	41	1.883275	CCCTCCGTTTGTGCAATTACA	59.117	47.619	0.00	0.00	0.00	2.41
41	42	2.294791	CCCTCCGTTTGTGCAATTACAA	59.705	45.455	0.00	0.00	38.69	2.41
42	43	3.056891	CCCTCCGTTTGTGCAATTACAAT	60.057	43.478	0.00	0.00	40.00	2.71
43	44	4.555262	CCTCCGTTTGTGCAATTACAATT	58.445	39.130	0.00	0.00	40.00	2.32
44	45	5.336055	CCCTCCGTTTGTGCAATTACAATTA	60.336	40.000	0.00	0.00	40.00	1.40
45	46	6.153067	CCTCCGTTTGTGCAATTACAATTAA	58.847	36.000	0.00	0.00	40.00	1.40
46	47	6.642950	CCTCCGTTTGTGCAATTACAATTAAA	59.357	34.615	0.00	0.00	40.00	1.52
47	48	7.169982	CCTCCGTTTGTGCAATTACAATTAAAA	59.830	33.333	0.00	0.00	40.00	1.52
48	49	8.420374	TCCGTTTGTGCAATTACAATTAAAAA	57.580	26.923	0.00	0.00	40.00	1.94
84	85	9.635520	CAAGTACTCCTTATATTACATTACGGG	57.364	37.037	0.00	0.00	0.00	5.28
85	86	9.592196	AAGTACTCCTTATATTACATTACGGGA	57.408	33.333	0.00	0.00	0.00	5.14
86	87	9.018582	AGTACTCCTTATATTACATTACGGGAC	57.981	37.037	0.00	0.00	0.00	4.46
87	88	7.844493	ACTCCTTATATTACATTACGGGACA	57.156	36.000	0.00	0.00	0.00	4.02
88	89	7.893658	ACTCCTTATATTACATTACGGGACAG	58.106	38.462	0.00	0.00	0.00	3.51
89	90	7.727186	ACTCCTTATATTACATTACGGGACAGA	59.273	37.037	0.00	0.00	0.00	3.41
90	91	8.118976	TCCTTATATTACATTACGGGACAGAG	57.881	38.462	0.00	0.00	0.00	3.35
91	92	7.177921	TCCTTATATTACATTACGGGACAGAGG	59.822	40.741	0.00	0.00	0.00	3.69
92	93	5.740290	ATATTACATTACGGGACAGAGGG	57.260	43.478	0.00	0.00	0.00	4.30
93	94	2.537633	TACATTACGGGACAGAGGGT	57.462	50.000	0.00	0.00	0.00	4.34
99	100	2.722201	CGGGACAGAGGGTGTAGCC	61.722	68.421	0.00	0.00	40.56	3.93
103	104	2.683933	CAGAGGGTGTAGCCGGGT	60.684	66.667	12.58	12.58	38.44	5.28
211	212	1.289380	GAAGCCGACCTTCTCGTGT	59.711	57.895	8.09	0.00	45.27	4.49
380	489	0.039074	CGGAAGACTGCTCTCGTTGT	60.039	55.000	0.00	0.00	0.00	3.32
580	689	4.936823	ACGCAGCCGTCGACGTTT	62.937	61.111	33.49	19.80	46.39	3.60
861	970	2.419198	CTTGGGCTCGATCTCCCG	59.581	66.667	11.45	0.00	45.60	5.14
971	1080	1.313091	TGGTGGTCGATCGAGTGGAG	61.313	60.000	20.09	0.00	0.00	3.86
976	1085	1.030488	GTCGATCGAGTGGAGGTGGA	61.030	60.000	20.09	0.00	0.00	4.02
986	1095	1.628846	GTGGAGGTGGACATGTACCTT	59.371	52.381	19.17	5.79	46.92	3.50
987	1096	2.835764	GTGGAGGTGGACATGTACCTTA	59.164	50.000	19.17	10.51	46.92	2.69
1214	1323	1.370900	ACGTCGCGTTGGTGTAGTC	60.371	57.895	5.77	0.00	36.35	2.59
1215	1324	2.423031	CGTCGCGTTGGTGTAGTCG	61.423	63.158	5.77	0.00	0.00	4.18
1271	1400	4.937620	CCTCGAATCAGATTCAGGAACAAA	59.062	41.667	24.04	4.73	38.62	2.83
1501	1630	8.203485	CCAAGGCTGCTAATAAATTTTCCATTA	58.797	33.333	0.00	0.00	0.00	1.90
1780	1936	1.378882	CCTCGTTCCCATCGTACCGA	61.379	60.000	0.00	0.00	41.13	4.69
1798	1954	2.159254	CCGAAAACATGGCAACTATGGG	60.159	50.000	0.00	0.00	37.61	4.00
1799	1955	2.491693	CGAAAACATGGCAACTATGGGT	59.508	45.455	0.00	0.00	37.61	4.51
1800	1956	3.673052	CGAAAACATGGCAACTATGGGTG	60.673	47.826	0.00	0.00	37.61	4.61
1801	1957	2.603075	AACATGGCAACTATGGGTGT	57.397	45.000	0.00	0.00	37.61	4.16
1802	1958	3.730215	AACATGGCAACTATGGGTGTA	57.270	42.857	0.00	0.00	37.61	2.90
1803	1959	3.281727	ACATGGCAACTATGGGTGTAG	57.718	47.619	0.00	0.00	37.61	2.74
1804	1960	2.576191	ACATGGCAACTATGGGTGTAGT	59.424	45.455	0.00	0.00	36.50	2.73
1810	1966	2.769663	CAACTATGGGTGTAGTAGGGCA	59.230	50.000	0.00	0.00	33.92	5.36
2009	2165	0.619832	AGCAGGAGGATGAGGAGCAA	60.620	55.000	0.00	0.00	0.00	3.91
2056	2212	2.919494	GCCTGGTTGTTGGGCTTCG	61.919	63.158	0.00	0.00	42.31	3.79
2089	2255	1.280133	CTCACAGGGAGGCAGATTCAA	59.720	52.381	0.00	0.00	40.13	2.69
2092	2258	3.523157	TCACAGGGAGGCAGATTCAATTA	59.477	43.478	0.00	0.00	0.00	1.40
2114	2280	8.985315	ATTAATGGCTTCATTCTTGTAGATCA	57.015	30.769	0.00	0.00	41.04	2.92
2141	2315	4.763793	CGGGAGATCTGGAATAATTTGCAT	59.236	41.667	0.00	0.00	32.32	3.96

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	1.249407	GTTTTGGATGCGGGGTGTTA	58.751	50.000	0.00	0.00	0.00	2.41
1	2	1.468506	GGTTTTGGATGCGGGGTGTT	61.469	55.000	0.00	0.00	0.00	3.32
2	3	1.906333	GGTTTTGGATGCGGGGTGT	60.906	57.895	0.00	0.00	0.00	4.16
4	5	2.283604	GGGTTTTGGATGCGGGGT	60.284	61.111	0.00	0.00	0.00	4.95
5	6	3.074369	GGGGTTTTGGATGCGGGG	61.074	66.667	0.00	0.00	0.00	5.73
6	7	2.037208	AGGGGTTTTGGATGCGGG	59.963	61.111	0.00	0.00	0.00	6.13
7	8	2.052104	GGAGGGGTTTTGGATGCGG	61.052	63.158	0.00	0.00	0.00	5.69
8	9	2.406616	CGGAGGGGTTTTGGATGCG	61.407	63.158	0.00	0.00	0.00	4.73
9	10	0.898326	AACGGAGGGGTTTTGGATGC	60.898	55.000	0.00	0.00	0.00	3.91
10	11	1.272212	CAAACGGAGGGGTTTTGGATG	59.728	52.381	0.00	0.00	38.01	3.51
11	12	1.133294	ACAAACGGAGGGGTTTTGGAT	60.133	47.619	0.00	0.00	38.01	3.41
12	13	0.259356	ACAAACGGAGGGGTTTTGGA	59.741	50.000	0.00	0.00	38.01	3.53
13	14	0.387565	CACAAACGGAGGGGTTTTGG	59.612	55.000	0.00	0.00	38.01	3.28
14	15	0.249280	GCACAAACGGAGGGGTTTTG	60.249	55.000	0.00	0.00	38.01	2.44
15	16	0.684805	TGCACAAACGGAGGGGTTTT	60.685	50.000	0.00	0.00	38.01	2.43
16	17	0.684805	TTGCACAAACGGAGGGGTTT	60.685	50.000	0.00	0.00	40.59	3.27
17	18	0.469144	ATTGCACAAACGGAGGGGTT	60.469	50.000	0.00	0.00	0.00	4.11
18	19	0.469144	AATTGCACAAACGGAGGGGT	60.469	50.000	0.00	0.00	0.00	4.95
19	20	1.201414	GTAATTGCACAAACGGAGGGG	59.799	52.381	0.00	0.00	0.00	4.79
20	21	1.883275	TGTAATTGCACAAACGGAGGG	59.117	47.619	0.00	0.00	0.00	4.30
21	22	3.634568	TTGTAATTGCACAAACGGAGG	57.365	42.857	0.00	0.00	35.53	4.30
22	23	7.630470	TTTAATTGTAATTGCACAAACGGAG	57.370	32.000	0.00	0.00	41.50	4.63
23	24	8.420374	TTTTTAATTGTAATTGCACAAACGGA	57.580	26.923	0.00	0.00	41.50	4.69
58	59	9.635520	CCCGTAATGTAATATAAGGAGTACTTG	57.364	37.037	0.00	0.00	40.37	3.16
59	60	9.592196	TCCCGTAATGTAATATAAGGAGTACTT	57.408	33.333	0.00	0.00	43.28	2.24
60	61	9.018582	GTCCCGTAATGTAATATAAGGAGTACT	57.981	37.037	0.00	0.00	0.00	2.73
61	62	8.796475	TGTCCCGTAATGTAATATAAGGAGTAC	58.204	37.037	0.00	0.00	0.00	2.73
62	63	8.938801	TGTCCCGTAATGTAATATAAGGAGTA	57.061	34.615	0.00	0.00	0.00	2.59
63	64	7.727186	TCTGTCCCGTAATGTAATATAAGGAGT	59.273	37.037	0.00	0.00	0.00	3.85
64	65	8.118976	TCTGTCCCGTAATGTAATATAAGGAG	57.881	38.462	0.00	0.00	0.00	3.69
65	66	7.177921	CCTCTGTCCCGTAATGTAATATAAGGA	59.822	40.741	0.00	0.00	0.00	3.36
66	67	7.321153	CCTCTGTCCCGTAATGTAATATAAGG	58.679	42.308	0.00	0.00	0.00	2.69
67	68	7.039223	ACCCTCTGTCCCGTAATGTAATATAAG	60.039	40.741	0.00	0.00	0.00	1.73
68	69	6.783977	ACCCTCTGTCCCGTAATGTAATATAA	59.216	38.462	0.00	0.00	0.00	0.98
69	70	6.209986	CACCCTCTGTCCCGTAATGTAATATA	59.790	42.308	0.00	0.00	0.00	0.86
70	71	5.011738	CACCCTCTGTCCCGTAATGTAATAT	59.988	44.000	0.00	0.00	0.00	1.28
71	72	4.342951	CACCCTCTGTCCCGTAATGTAATA	59.657	45.833	0.00	0.00	0.00	0.98
72	73	3.134081	CACCCTCTGTCCCGTAATGTAAT	59.866	47.826	0.00	0.00	0.00	1.89
73	74	2.498481	CACCCTCTGTCCCGTAATGTAA	59.502	50.000	0.00	0.00	0.00	2.41
74	75	2.104967	CACCCTCTGTCCCGTAATGTA	58.895	52.381	0.00	0.00	0.00	2.29
75	76	0.902531	CACCCTCTGTCCCGTAATGT	59.097	55.000	0.00	0.00	0.00	2.71
76	77	0.902531	ACACCCTCTGTCCCGTAATG	59.097	55.000	0.00	0.00	0.00	1.90
77	78	2.385803	CTACACCCTCTGTCCCGTAAT	58.614	52.381	0.00	0.00	33.91	1.89
78	79	1.843368	CTACACCCTCTGTCCCGTAA	58.157	55.000	0.00	0.00	33.91	3.18
79	80	0.682209	GCTACACCCTCTGTCCCGTA	60.682	60.000	0.00	0.00	33.91	4.02
80	81	1.982938	GCTACACCCTCTGTCCCGT	60.983	63.158	0.00	0.00	33.91	5.28
81	82	2.722201	GGCTACACCCTCTGTCCCG	61.722	68.421	0.00	0.00	33.91	5.14
82	83	2.722201	CGGCTACACCCTCTGTCCC	61.722	68.421	0.00	0.00	33.91	4.46
83	84	2.722201	CCGGCTACACCCTCTGTCC	61.722	68.421	0.00	0.00	33.91	4.02
84	85	2.722201	CCCGGCTACACCCTCTGTC	61.722	68.421	0.00	0.00	33.91	3.51
85	86	2.683933	CCCGGCTACACCCTCTGT	60.684	66.667	0.00	0.00	36.82	3.41
86	87	2.683933	ACCCGGCTACACCCTCTG	60.684	66.667	0.00	0.00	33.26	3.35
87	88	2.683933	CACCCGGCTACACCCTCT	60.684	66.667	0.00	0.00	33.26	3.69
88	89	4.468689	GCACCCGGCTACACCCTC	62.469	72.222	0.00	0.00	40.25	4.30
90	91	4.338710	TTGCACCCGGCTACACCC	62.339	66.667	0.00	0.00	45.15	4.61
91	92	2.746277	CTTGCACCCGGCTACACC	60.746	66.667	0.00	0.00	45.15	4.16
92	93	2.032071	ACTTGCACCCGGCTACAC	59.968	61.111	0.00	0.00	45.15	2.90
93	94	2.031919	CACTTGCACCCGGCTACA	59.968	61.111	0.00	0.00	45.15	2.74
253	254	0.108662	ACGTGAGCGAGATGATGCAA	60.109	50.000	0.00	0.00	42.00	4.08
563	672	4.936823	AAACGTCGACGGCTGCGT	62.937	61.111	37.89	16.47	44.95	5.24
907	1016	1.526986	CGATCGCGTGTGTTGATTTCC	60.527	52.381	5.77	0.00	0.00	3.13
971	1080	1.479323	TCGCTAAGGTACATGTCCACC	59.521	52.381	9.45	9.45	34.86	4.61
976	1085	1.137086	CCTGCTCGCTAAGGTACATGT	59.863	52.381	2.69	2.69	0.00	3.21
986	1095	1.142531	CTCATGTGCCTGCTCGCTA	59.857	57.895	0.00	0.00	0.00	4.26
987	1096	2.125229	CTCATGTGCCTGCTCGCT	60.125	61.111	0.00	0.00	0.00	4.93
1029	1138	3.069318	GCCTTCGTCGGGGACTCT	61.069	66.667	8.88	0.00	0.00	3.24
1271	1400	2.947652	TCGAATCTTACCGAATCGACCT	59.052	45.455	3.36	0.00	46.09	3.85
1315	1444	2.734175	CGAACCTGAATCGACGATCCAA	60.734	50.000	11.42	0.00	42.76	3.53
1780	1936	3.238597	ACACCCATAGTTGCCATGTTTT	58.761	40.909	0.00	0.00	0.00	2.43
1798	1954	2.186125	GGCCGTGCCCTACTACAC	59.814	66.667	3.73	0.00	44.06	2.90
1950	2106	2.383368	ACTACTCGTCGCTCTACACT	57.617	50.000	0.00	0.00	0.00	3.55
2034	2190	3.294493	CCCAACAACCAGGCCGTG	61.294	66.667	0.00	0.00	0.00	4.94
2056	2212	1.446907	CTGTGAGTCTGGGATGCAAC	58.553	55.000	0.00	0.00	0.00	4.17
2089	2255	8.844244	GTGATCTACAAGAATGAAGCCATTAAT	58.156	33.333	0.00	0.00	42.66	1.40
2092	2258	6.094603	GTGTGATCTACAAGAATGAAGCCATT	59.905	38.462	0.00	0.00	42.33	3.16
2114	2280	2.471815	TATTCCAGATCTCCCGGTGT	57.528	50.000	0.00	0.00	0.00	4.16
2141	2315	2.049156	CGTCCAGCGAGACAGCAA	60.049	61.111	9.41	0.00	44.77	3.91

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.