Multiple sequence alignment - TraesCS6B01G319400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G319400 chr6B 100.000 4791 0 0 1 4791 567392839 567397629 0.000000e+00 8848
1 TraesCS6B01G319400 chr6A 94.496 3579 135 34 1257 4788 521448057 521451620 0.000000e+00 5461
2 TraesCS6B01G319400 chr6A 93.765 818 29 9 434 1237 521447261 521448070 0.000000e+00 1208
3 TraesCS6B01G319400 chr6A 96.092 435 17 0 1 435 521439203 521439637 0.000000e+00 710
4 TraesCS6B01G319400 chr6A 75.771 454 90 12 1 440 603077830 603078277 1.350000e-50 211
5 TraesCS6B01G319400 chr6A 91.919 99 8 0 334 432 250840415 250840513 6.470000e-29 139
6 TraesCS6B01G319400 chr6D 95.760 2382 90 9 2418 4791 379576378 379574000 0.000000e+00 3829
7 TraesCS6B01G319400 chr6D 94.848 1087 51 2 1331 2413 379577654 379576569 0.000000e+00 1692
8 TraesCS6B01G319400 chr6D 92.542 590 34 6 657 1237 379578444 379577856 0.000000e+00 837
9 TraesCS6B01G319400 chr2A 87.907 430 43 3 3 432 290087486 290087066 9.260000e-137 497
10 TraesCS6B01G319400 chr2A 91.949 236 19 0 195 430 566588041 566587806 9.940000e-87 331
11 TraesCS6B01G319400 chr2A 79.953 429 69 9 18 432 378839835 378839410 2.800000e-77 300
12 TraesCS6B01G319400 chr1B 78.802 434 70 16 13 439 569548333 569548751 6.110000e-69 272
13 TraesCS6B01G319400 chr5A 76.457 446 87 11 1 433 37142284 37141844 4.820000e-55 226
14 TraesCS6B01G319400 chr5A 75.711 457 87 13 1 441 640922246 640922694 1.750000e-49 207
15 TraesCS6B01G319400 chr3A 76.404 445 87 11 1 432 589836220 589836659 1.740000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G319400 chr6B 567392839 567397629 4790 False 8848.000000 8848 100.000000 1 4791 1 chr6B.!!$F1 4790
1 TraesCS6B01G319400 chr6A 521447261 521451620 4359 False 3334.500000 5461 94.130500 434 4788 2 chr6A.!!$F4 4354
2 TraesCS6B01G319400 chr6D 379574000 379578444 4444 True 2119.333333 3829 94.383333 657 4791 3 chr6D.!!$R1 4134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.881796 TGCACAGTGAGTACTCTCCG 59.118 55.000 23.01 14.48 39.75 4.63 F
40 41 0.882474 GCACAGTGAGTACTCTCCGT 59.118 55.000 23.01 15.12 39.75 4.69 F
1521 1708 0.665369 GCACACATTCCTGCACTTGC 60.665 55.000 0.00 0.00 42.50 4.01 F
1522 1709 0.956633 CACACATTCCTGCACTTGCT 59.043 50.000 2.33 0.00 42.66 3.91 F
2088 2275 1.069906 CGTTCAGACTTTGGCCTTTCG 60.070 52.381 3.32 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1306 1334 1.154016 CACGAGAACTCATCGCCGT 60.154 57.895 0.0 0.0 43.91 5.68 R
1695 1882 2.202932 CTCGCATCCCACTTCCCG 60.203 66.667 0.0 0.0 0.00 5.14 R
3119 3514 1.238439 CTGAACCCACTCGTGCAAAT 58.762 50.000 0.0 0.0 0.00 2.32 R
3212 3607 6.710597 AGAAATGATACATCAGCAAGCAAT 57.289 33.333 0.0 0.0 40.64 3.56 R
3995 4390 2.796593 GCATAAATGGAAAATGCTCGCC 59.203 45.455 0.0 0.0 42.15 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.773323 AGAACTAGCTTGTCCAATTTGC 57.227 40.909 0.07 0.00 0.00 3.68
23 24 4.144297 AGAACTAGCTTGTCCAATTTGCA 58.856 39.130 0.07 0.00 0.00 4.08
24 25 3.923017 ACTAGCTTGTCCAATTTGCAC 57.077 42.857 0.00 0.00 0.00 4.57
25 26 3.221771 ACTAGCTTGTCCAATTTGCACA 58.778 40.909 0.00 0.00 0.00 4.57
26 27 2.806608 AGCTTGTCCAATTTGCACAG 57.193 45.000 0.00 0.00 0.00 3.66
27 28 2.034124 AGCTTGTCCAATTTGCACAGT 58.966 42.857 0.00 0.00 0.00 3.55
28 29 2.129607 GCTTGTCCAATTTGCACAGTG 58.870 47.619 0.00 0.00 0.00 3.66
29 30 2.223782 GCTTGTCCAATTTGCACAGTGA 60.224 45.455 4.15 0.00 0.00 3.41
30 31 3.635331 CTTGTCCAATTTGCACAGTGAG 58.365 45.455 4.15 0.00 0.00 3.51
31 32 2.653726 TGTCCAATTTGCACAGTGAGT 58.346 42.857 4.15 0.00 0.00 3.41
32 33 3.814625 TGTCCAATTTGCACAGTGAGTA 58.185 40.909 4.15 0.00 0.00 2.59
33 34 3.563808 TGTCCAATTTGCACAGTGAGTAC 59.436 43.478 4.15 0.00 0.00 2.73
34 35 3.815401 GTCCAATTTGCACAGTGAGTACT 59.185 43.478 4.15 0.00 37.75 2.73
35 36 4.065088 TCCAATTTGCACAGTGAGTACTC 58.935 43.478 16.32 16.32 34.07 2.59
36 37 4.067896 CCAATTTGCACAGTGAGTACTCT 58.932 43.478 23.01 1.36 34.07 3.24
37 38 4.153117 CCAATTTGCACAGTGAGTACTCTC 59.847 45.833 23.01 19.21 40.79 3.20
38 39 3.386768 TTTGCACAGTGAGTACTCTCC 57.613 47.619 23.01 13.59 39.75 3.71
39 40 0.881796 TGCACAGTGAGTACTCTCCG 59.118 55.000 23.01 14.48 39.75 4.63
40 41 0.882474 GCACAGTGAGTACTCTCCGT 59.118 55.000 23.01 15.12 39.75 4.69
41 42 1.269998 GCACAGTGAGTACTCTCCGTT 59.730 52.381 23.01 4.82 39.75 4.44
42 43 2.922758 GCACAGTGAGTACTCTCCGTTG 60.923 54.545 23.01 15.49 39.75 4.10
43 44 1.269998 ACAGTGAGTACTCTCCGTTGC 59.730 52.381 23.01 5.58 39.75 4.17
44 45 1.269723 CAGTGAGTACTCTCCGTTGCA 59.730 52.381 23.01 0.00 39.75 4.08
45 46 1.269998 AGTGAGTACTCTCCGTTGCAC 59.730 52.381 23.01 11.10 39.75 4.57
46 47 1.000607 GTGAGTACTCTCCGTTGCACA 60.001 52.381 23.01 0.00 39.75 4.57
47 48 1.893137 TGAGTACTCTCCGTTGCACAT 59.107 47.619 23.01 0.00 39.75 3.21
48 49 2.299013 TGAGTACTCTCCGTTGCACATT 59.701 45.455 23.01 0.00 39.75 2.71
49 50 3.244078 TGAGTACTCTCCGTTGCACATTT 60.244 43.478 23.01 0.00 39.75 2.32
50 51 3.740115 AGTACTCTCCGTTGCACATTTT 58.260 40.909 0.00 0.00 0.00 1.82
51 52 4.134563 AGTACTCTCCGTTGCACATTTTT 58.865 39.130 0.00 0.00 0.00 1.94
52 53 5.302360 AGTACTCTCCGTTGCACATTTTTA 58.698 37.500 0.00 0.00 0.00 1.52
53 54 4.749245 ACTCTCCGTTGCACATTTTTAG 57.251 40.909 0.00 0.00 0.00 1.85
54 55 4.385825 ACTCTCCGTTGCACATTTTTAGA 58.614 39.130 0.00 0.00 0.00 2.10
55 56 4.213482 ACTCTCCGTTGCACATTTTTAGAC 59.787 41.667 0.00 0.00 0.00 2.59
56 57 4.130857 TCTCCGTTGCACATTTTTAGACA 58.869 39.130 0.00 0.00 0.00 3.41
57 58 4.759693 TCTCCGTTGCACATTTTTAGACAT 59.240 37.500 0.00 0.00 0.00 3.06
58 59 5.240623 TCTCCGTTGCACATTTTTAGACATT 59.759 36.000 0.00 0.00 0.00 2.71
59 60 5.457140 TCCGTTGCACATTTTTAGACATTC 58.543 37.500 0.00 0.00 0.00 2.67
60 61 4.621034 CCGTTGCACATTTTTAGACATTCC 59.379 41.667 0.00 0.00 0.00 3.01
61 62 4.320690 CGTTGCACATTTTTAGACATTCCG 59.679 41.667 0.00 0.00 0.00 4.30
62 63 5.219633 GTTGCACATTTTTAGACATTCCGT 58.780 37.500 0.00 0.00 0.00 4.69
63 64 4.793071 TGCACATTTTTAGACATTCCGTG 58.207 39.130 0.00 0.00 0.00 4.94
64 65 3.608073 GCACATTTTTAGACATTCCGTGC 59.392 43.478 0.00 0.00 40.21 5.34
65 66 3.845775 CACATTTTTAGACATTCCGTGCG 59.154 43.478 0.00 0.00 0.00 5.34
66 67 3.749088 ACATTTTTAGACATTCCGTGCGA 59.251 39.130 0.00 0.00 0.00 5.10
67 68 4.214545 ACATTTTTAGACATTCCGTGCGAA 59.785 37.500 0.00 0.00 34.14 4.70
68 69 4.815040 TTTTTAGACATTCCGTGCGAAA 57.185 36.364 0.00 0.00 33.08 3.46
69 70 5.365403 TTTTTAGACATTCCGTGCGAAAT 57.635 34.783 0.00 0.00 33.08 2.17
70 71 6.483385 TTTTTAGACATTCCGTGCGAAATA 57.517 33.333 0.00 0.00 33.08 1.40
71 72 6.671614 TTTTAGACATTCCGTGCGAAATAT 57.328 33.333 0.00 0.00 33.08 1.28
72 73 6.671614 TTTAGACATTCCGTGCGAAATATT 57.328 33.333 0.00 0.00 33.08 1.28
73 74 6.671614 TTAGACATTCCGTGCGAAATATTT 57.328 33.333 0.00 0.00 33.08 1.40
74 75 4.908736 AGACATTCCGTGCGAAATATTTG 58.091 39.130 5.17 0.00 33.08 2.32
75 76 4.394920 AGACATTCCGTGCGAAATATTTGT 59.605 37.500 5.17 0.00 33.08 2.83
76 77 4.411327 ACATTCCGTGCGAAATATTTGTG 58.589 39.130 5.17 0.00 33.08 3.33
77 78 4.083003 ACATTCCGTGCGAAATATTTGTGT 60.083 37.500 5.17 0.00 33.08 3.72
78 79 4.491234 TTCCGTGCGAAATATTTGTGTT 57.509 36.364 5.17 0.00 0.00 3.32
79 80 5.608676 TTCCGTGCGAAATATTTGTGTTA 57.391 34.783 5.17 0.00 0.00 2.41
80 81 5.608676 TCCGTGCGAAATATTTGTGTTAA 57.391 34.783 5.17 0.00 0.00 2.01
81 82 5.383958 TCCGTGCGAAATATTTGTGTTAAC 58.616 37.500 5.17 0.00 0.00 2.01
82 83 5.179742 TCCGTGCGAAATATTTGTGTTAACT 59.820 36.000 5.17 0.00 0.00 2.24
83 84 6.368243 TCCGTGCGAAATATTTGTGTTAACTA 59.632 34.615 5.17 0.00 0.00 2.24
84 85 7.064847 TCCGTGCGAAATATTTGTGTTAACTAT 59.935 33.333 5.17 0.00 0.00 2.12
85 86 8.329583 CCGTGCGAAATATTTGTGTTAACTATA 58.670 33.333 5.17 0.81 0.00 1.31
86 87 9.858247 CGTGCGAAATATTTGTGTTAACTATAT 57.142 29.630 5.17 2.96 0.00 0.86
97 98 9.781633 TTTGTGTTAACTATATATATTGCCCGT 57.218 29.630 7.22 0.00 0.00 5.28
98 99 8.766000 TGTGTTAACTATATATATTGCCCGTG 57.234 34.615 7.22 0.00 0.00 4.94
99 100 8.586744 TGTGTTAACTATATATATTGCCCGTGA 58.413 33.333 7.22 0.00 0.00 4.35
100 101 9.426837 GTGTTAACTATATATATTGCCCGTGAA 57.573 33.333 7.22 0.00 0.00 3.18
105 106 8.893219 ACTATATATATTGCCCGTGAATGATG 57.107 34.615 0.00 0.00 0.00 3.07
106 107 7.933577 ACTATATATATTGCCCGTGAATGATGG 59.066 37.037 0.00 0.00 0.00 3.51
107 108 2.727123 TATTGCCCGTGAATGATGGT 57.273 45.000 0.00 0.00 0.00 3.55
108 109 1.851304 ATTGCCCGTGAATGATGGTT 58.149 45.000 0.00 0.00 0.00 3.67
109 110 2.498644 TTGCCCGTGAATGATGGTTA 57.501 45.000 0.00 0.00 0.00 2.85
110 111 2.727123 TGCCCGTGAATGATGGTTAT 57.273 45.000 0.00 0.00 0.00 1.89
111 112 2.296792 TGCCCGTGAATGATGGTTATG 58.703 47.619 0.00 0.00 0.00 1.90
112 113 2.092699 TGCCCGTGAATGATGGTTATGA 60.093 45.455 0.00 0.00 0.00 2.15
113 114 2.549754 GCCCGTGAATGATGGTTATGAG 59.450 50.000 0.00 0.00 0.00 2.90
114 115 3.808728 CCCGTGAATGATGGTTATGAGT 58.191 45.455 0.00 0.00 0.00 3.41
115 116 4.199310 CCCGTGAATGATGGTTATGAGTT 58.801 43.478 0.00 0.00 0.00 3.01
116 117 4.035558 CCCGTGAATGATGGTTATGAGTTG 59.964 45.833 0.00 0.00 0.00 3.16
117 118 4.875536 CCGTGAATGATGGTTATGAGTTGA 59.124 41.667 0.00 0.00 0.00 3.18
118 119 5.007039 CCGTGAATGATGGTTATGAGTTGAG 59.993 44.000 0.00 0.00 0.00 3.02
119 120 5.812127 CGTGAATGATGGTTATGAGTTGAGA 59.188 40.000 0.00 0.00 0.00 3.27
120 121 6.313658 CGTGAATGATGGTTATGAGTTGAGAA 59.686 38.462 0.00 0.00 0.00 2.87
121 122 7.148423 CGTGAATGATGGTTATGAGTTGAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
122 123 8.180267 GTGAATGATGGTTATGAGTTGAGAAAG 58.820 37.037 0.00 0.00 0.00 2.62
123 124 8.102676 TGAATGATGGTTATGAGTTGAGAAAGA 58.897 33.333 0.00 0.00 0.00 2.52
124 125 8.868522 AATGATGGTTATGAGTTGAGAAAGAA 57.131 30.769 0.00 0.00 0.00 2.52
125 126 7.912056 TGATGGTTATGAGTTGAGAAAGAAG 57.088 36.000 0.00 0.00 0.00 2.85
126 127 7.453393 TGATGGTTATGAGTTGAGAAAGAAGT 58.547 34.615 0.00 0.00 0.00 3.01
127 128 7.939039 TGATGGTTATGAGTTGAGAAAGAAGTT 59.061 33.333 0.00 0.00 0.00 2.66
128 129 8.697507 ATGGTTATGAGTTGAGAAAGAAGTTT 57.302 30.769 0.00 0.00 0.00 2.66
129 130 8.519799 TGGTTATGAGTTGAGAAAGAAGTTTT 57.480 30.769 0.00 0.00 0.00 2.43
130 131 8.966868 TGGTTATGAGTTGAGAAAGAAGTTTTT 58.033 29.630 0.00 0.00 0.00 1.94
160 161 7.609760 ACTTGCTCAAATATTGTACGAATGA 57.390 32.000 0.00 0.00 0.00 2.57
161 162 8.039603 ACTTGCTCAAATATTGTACGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
162 163 8.177663 ACTTGCTCAAATATTGTACGAATGAAG 58.822 33.333 0.00 0.00 0.00 3.02
163 164 6.486248 TGCTCAAATATTGTACGAATGAAGC 58.514 36.000 0.00 0.00 0.00 3.86
164 165 6.316140 TGCTCAAATATTGTACGAATGAAGCT 59.684 34.615 0.00 0.00 0.00 3.74
165 166 7.494298 TGCTCAAATATTGTACGAATGAAGCTA 59.506 33.333 0.00 0.00 0.00 3.32
166 167 8.335356 GCTCAAATATTGTACGAATGAAGCTAA 58.665 33.333 0.00 0.00 0.00 3.09
171 172 8.942338 ATATTGTACGAATGAAGCTAAAGACA 57.058 30.769 0.00 0.00 0.00 3.41
172 173 7.667043 ATTGTACGAATGAAGCTAAAGACAA 57.333 32.000 0.00 0.00 0.00 3.18
173 174 6.462073 TGTACGAATGAAGCTAAAGACAAC 57.538 37.500 0.00 0.00 0.00 3.32
174 175 5.986741 TGTACGAATGAAGCTAAAGACAACA 59.013 36.000 0.00 0.00 0.00 3.33
175 176 6.649141 TGTACGAATGAAGCTAAAGACAACAT 59.351 34.615 0.00 0.00 0.00 2.71
176 177 6.560253 ACGAATGAAGCTAAAGACAACATT 57.440 33.333 0.00 0.00 0.00 2.71
177 178 6.603095 ACGAATGAAGCTAAAGACAACATTC 58.397 36.000 0.00 0.00 38.82 2.67
178 179 6.024049 CGAATGAAGCTAAAGACAACATTCC 58.976 40.000 0.00 0.00 38.92 3.01
179 180 6.128172 CGAATGAAGCTAAAGACAACATTCCT 60.128 38.462 0.00 0.00 38.92 3.36
180 181 7.530426 AATGAAGCTAAAGACAACATTCCTT 57.470 32.000 0.00 0.00 0.00 3.36
181 182 6.959639 TGAAGCTAAAGACAACATTCCTTT 57.040 33.333 0.00 0.00 34.81 3.11
182 183 8.635765 ATGAAGCTAAAGACAACATTCCTTTA 57.364 30.769 0.00 0.00 32.92 1.85
183 184 8.635765 TGAAGCTAAAGACAACATTCCTTTAT 57.364 30.769 0.00 0.00 33.52 1.40
184 185 9.733556 TGAAGCTAAAGACAACATTCCTTTATA 57.266 29.630 0.00 0.00 33.52 0.98
188 189 9.237846 GCTAAAGACAACATTCCTTTATATTGC 57.762 33.333 0.00 0.00 33.52 3.56
190 191 8.986477 AAAGACAACATTCCTTTATATTGCAC 57.014 30.769 0.00 0.00 0.00 4.57
191 192 6.785191 AGACAACATTCCTTTATATTGCACG 58.215 36.000 0.00 0.00 0.00 5.34
192 193 6.597672 AGACAACATTCCTTTATATTGCACGA 59.402 34.615 0.00 0.00 0.00 4.35
193 194 6.785191 ACAACATTCCTTTATATTGCACGAG 58.215 36.000 0.00 0.00 0.00 4.18
194 195 6.597672 ACAACATTCCTTTATATTGCACGAGA 59.402 34.615 0.00 0.00 0.00 4.04
195 196 7.120579 ACAACATTCCTTTATATTGCACGAGAA 59.879 33.333 0.00 0.00 0.00 2.87
196 197 7.807977 ACATTCCTTTATATTGCACGAGAAT 57.192 32.000 0.00 0.00 0.00 2.40
197 198 8.902540 ACATTCCTTTATATTGCACGAGAATA 57.097 30.769 0.00 0.00 0.00 1.75
198 199 9.507329 ACATTCCTTTATATTGCACGAGAATAT 57.493 29.630 0.00 0.00 32.12 1.28
209 210 7.528481 TTGCACGAGAATATATTAAACACGT 57.472 32.000 0.00 0.60 0.00 4.49
210 211 7.157050 TGCACGAGAATATATTAAACACGTC 57.843 36.000 0.00 0.11 0.00 4.34
211 212 6.752815 TGCACGAGAATATATTAAACACGTCA 59.247 34.615 0.00 2.24 0.00 4.35
212 213 7.275999 TGCACGAGAATATATTAAACACGTCAA 59.724 33.333 0.00 0.00 0.00 3.18
213 214 7.787935 GCACGAGAATATATTAAACACGTCAAG 59.212 37.037 0.00 0.00 0.00 3.02
214 215 8.804743 CACGAGAATATATTAAACACGTCAAGT 58.195 33.333 0.00 0.00 0.00 3.16
227 228 7.829378 AACACGTCAAGTAGATCTTAATTCC 57.171 36.000 0.00 0.00 34.66 3.01
228 229 7.171630 ACACGTCAAGTAGATCTTAATTCCT 57.828 36.000 0.00 0.00 34.66 3.36
229 230 8.289939 ACACGTCAAGTAGATCTTAATTCCTA 57.710 34.615 0.00 0.00 34.66 2.94
230 231 8.746530 ACACGTCAAGTAGATCTTAATTCCTAA 58.253 33.333 0.00 0.00 34.66 2.69
231 232 9.021863 CACGTCAAGTAGATCTTAATTCCTAAC 57.978 37.037 0.00 0.00 34.66 2.34
232 233 8.746530 ACGTCAAGTAGATCTTAATTCCTAACA 58.253 33.333 0.00 0.00 34.66 2.41
233 234 9.582431 CGTCAAGTAGATCTTAATTCCTAACAA 57.418 33.333 0.00 0.00 34.66 2.83
253 254 9.599322 CTAACAAATTATTAGTTGGATCATCGC 57.401 33.333 0.00 0.00 33.79 4.58
254 255 7.807977 ACAAATTATTAGTTGGATCATCGCT 57.192 32.000 0.00 0.00 33.79 4.93
255 256 7.865707 ACAAATTATTAGTTGGATCATCGCTC 58.134 34.615 0.00 0.00 33.79 5.03
256 257 7.716998 ACAAATTATTAGTTGGATCATCGCTCT 59.283 33.333 0.00 0.00 33.79 4.09
257 258 7.897575 AATTATTAGTTGGATCATCGCTCTC 57.102 36.000 0.00 0.00 0.00 3.20
258 259 6.656632 TTATTAGTTGGATCATCGCTCTCT 57.343 37.500 0.00 0.00 0.00 3.10
259 260 2.886862 AGTTGGATCATCGCTCTCTG 57.113 50.000 0.00 0.00 0.00 3.35
260 261 2.106566 AGTTGGATCATCGCTCTCTGT 58.893 47.619 0.00 0.00 0.00 3.41
261 262 2.159128 AGTTGGATCATCGCTCTCTGTG 60.159 50.000 0.00 0.00 0.00 3.66
262 263 1.478631 TGGATCATCGCTCTCTGTGT 58.521 50.000 0.00 0.00 0.00 3.72
263 264 2.654863 TGGATCATCGCTCTCTGTGTA 58.345 47.619 0.00 0.00 0.00 2.90
264 265 3.225940 TGGATCATCGCTCTCTGTGTAT 58.774 45.455 0.00 0.00 0.00 2.29
265 266 4.398319 TGGATCATCGCTCTCTGTGTATA 58.602 43.478 0.00 0.00 0.00 1.47
266 267 4.216472 TGGATCATCGCTCTCTGTGTATAC 59.784 45.833 0.00 0.00 0.00 1.47
267 268 4.216472 GGATCATCGCTCTCTGTGTATACA 59.784 45.833 0.08 0.08 35.08 2.29
268 269 5.105957 GGATCATCGCTCTCTGTGTATACAT 60.106 44.000 9.18 0.00 35.97 2.29
269 270 5.363979 TCATCGCTCTCTGTGTATACATC 57.636 43.478 9.18 3.86 35.97 3.06
270 271 3.879932 TCGCTCTCTGTGTATACATCG 57.120 47.619 9.18 3.56 35.97 3.84
271 272 3.203716 TCGCTCTCTGTGTATACATCGT 58.796 45.455 9.18 0.00 35.97 3.73
272 273 3.247886 TCGCTCTCTGTGTATACATCGTC 59.752 47.826 9.18 0.00 35.97 4.20
273 274 3.002348 CGCTCTCTGTGTATACATCGTCA 59.998 47.826 9.18 1.28 35.97 4.35
274 275 4.495844 CGCTCTCTGTGTATACATCGTCAA 60.496 45.833 9.18 0.00 35.97 3.18
275 276 5.340803 GCTCTCTGTGTATACATCGTCAAA 58.659 41.667 9.18 0.00 35.97 2.69
276 277 5.980116 GCTCTCTGTGTATACATCGTCAAAT 59.020 40.000 9.18 0.00 35.97 2.32
277 278 6.477033 GCTCTCTGTGTATACATCGTCAAATT 59.523 38.462 9.18 0.00 35.97 1.82
278 279 7.648112 GCTCTCTGTGTATACATCGTCAAATTA 59.352 37.037 9.18 0.00 35.97 1.40
279 280 8.851960 TCTCTGTGTATACATCGTCAAATTAC 57.148 34.615 9.18 0.00 35.97 1.89
280 281 8.683615 TCTCTGTGTATACATCGTCAAATTACT 58.316 33.333 9.18 0.00 35.97 2.24
281 282 9.302345 CTCTGTGTATACATCGTCAAATTACTT 57.698 33.333 9.18 0.00 35.97 2.24
282 283 9.647797 TCTGTGTATACATCGTCAAATTACTTT 57.352 29.630 9.18 0.00 35.97 2.66
301 302 6.843069 ACTTTTTGTAATGACCAACATTGC 57.157 33.333 0.00 0.00 46.93 3.56
307 308 5.119931 GTAATGACCAACATTGCAAGTGA 57.880 39.130 4.94 0.00 46.93 3.41
308 309 4.669206 AATGACCAACATTGCAAGTGAA 57.331 36.364 4.94 0.00 45.99 3.18
309 310 3.713858 TGACCAACATTGCAAGTGAAG 57.286 42.857 4.94 0.00 0.00 3.02
310 311 3.023119 TGACCAACATTGCAAGTGAAGT 58.977 40.909 4.94 0.00 0.00 3.01
311 312 4.203226 TGACCAACATTGCAAGTGAAGTA 58.797 39.130 4.94 0.00 0.00 2.24
312 313 4.275689 TGACCAACATTGCAAGTGAAGTAG 59.724 41.667 4.94 0.00 0.00 2.57
313 314 4.460263 ACCAACATTGCAAGTGAAGTAGA 58.540 39.130 4.94 0.00 0.00 2.59
314 315 5.072741 ACCAACATTGCAAGTGAAGTAGAT 58.927 37.500 4.94 0.00 0.00 1.98
315 316 5.536161 ACCAACATTGCAAGTGAAGTAGATT 59.464 36.000 4.94 0.00 0.00 2.40
316 317 6.714810 ACCAACATTGCAAGTGAAGTAGATTA 59.285 34.615 4.94 0.00 0.00 1.75
317 318 7.023575 CCAACATTGCAAGTGAAGTAGATTAC 58.976 38.462 4.94 0.00 0.00 1.89
318 319 7.308529 CCAACATTGCAAGTGAAGTAGATTACA 60.309 37.037 4.94 0.00 0.00 2.41
319 320 7.744087 ACATTGCAAGTGAAGTAGATTACAA 57.256 32.000 4.94 0.00 0.00 2.41
320 321 8.340618 ACATTGCAAGTGAAGTAGATTACAAT 57.659 30.769 4.94 0.00 0.00 2.71
321 322 8.796475 ACATTGCAAGTGAAGTAGATTACAATT 58.204 29.630 4.94 0.00 0.00 2.32
369 370 7.614908 CATGTGAAACTTAACATGCATTATGC 58.385 34.615 10.65 10.65 45.05 3.14
370 371 6.923012 TGTGAAACTTAACATGCATTATGCT 58.077 32.000 18.44 0.17 40.65 3.79
371 372 7.377398 TGTGAAACTTAACATGCATTATGCTT 58.623 30.769 18.44 9.28 40.65 3.91
372 373 8.518702 TGTGAAACTTAACATGCATTATGCTTA 58.481 29.630 18.44 6.06 40.65 3.09
373 374 9.520204 GTGAAACTTAACATGCATTATGCTTAT 57.480 29.630 18.44 1.35 45.31 1.73
408 409 9.267084 CCAATAAAATATTTTAAATCCCCGTGG 57.733 33.333 21.33 14.43 36.35 4.94
409 410 8.769891 CAATAAAATATTTTAAATCCCCGTGGC 58.230 33.333 21.33 0.00 36.35 5.01
410 411 5.941555 AAATATTTTAAATCCCCGTGGCA 57.058 34.783 0.00 0.00 0.00 4.92
411 412 5.941555 AATATTTTAAATCCCCGTGGCAA 57.058 34.783 0.00 0.00 0.00 4.52
412 413 3.603158 ATTTTAAATCCCCGTGGCAAC 57.397 42.857 0.00 0.00 0.00 4.17
423 424 2.911509 TGGCAACGCACAGGCATT 60.912 55.556 0.00 0.00 41.24 3.56
424 425 2.126346 GGCAACGCACAGGCATTC 60.126 61.111 0.00 0.00 41.24 2.67
425 426 2.629656 GGCAACGCACAGGCATTCT 61.630 57.895 0.00 0.00 41.24 2.40
444 445 6.092670 GCATTCTGCTAGTTGATGTAGTTTGA 59.907 38.462 0.00 0.00 40.96 2.69
445 446 7.201679 GCATTCTGCTAGTTGATGTAGTTTGAT 60.202 37.037 0.00 0.00 40.96 2.57
568 571 6.147864 GCATTTTATTTATGCAGAGACCCA 57.852 37.500 0.00 0.00 45.93 4.51
569 572 6.572519 GCATTTTATTTATGCAGAGACCCAA 58.427 36.000 0.00 0.00 45.93 4.12
618 621 6.013898 TCCTCCTGATGCTCCATCTTAAATAG 60.014 42.308 6.74 0.00 41.06 1.73
678 681 2.735762 GCGCTACTTCAAAGTCCGAGAT 60.736 50.000 15.61 0.00 40.37 2.75
785 791 2.750350 CAGGAAGCAGAACCCGGT 59.250 61.111 0.00 0.00 0.00 5.28
904 917 2.723464 ATAGCCTCCGCTCTCCCTCC 62.723 65.000 0.00 0.00 43.95 4.30
905 918 4.851214 GCCTCCGCTCTCCCTCCT 62.851 72.222 0.00 0.00 0.00 3.69
1021 1047 2.884207 GCGTCCCGTCAATCGACC 60.884 66.667 0.00 0.00 42.86 4.79
1230 1257 2.898705 AGGTGATGCTCGAGTCATTTC 58.101 47.619 15.13 13.10 0.00 2.17
1231 1258 2.234661 AGGTGATGCTCGAGTCATTTCA 59.765 45.455 15.13 10.84 0.00 2.69
1232 1259 3.118482 AGGTGATGCTCGAGTCATTTCAT 60.118 43.478 15.13 7.48 0.00 2.57
1233 1260 3.624861 GGTGATGCTCGAGTCATTTCATT 59.375 43.478 15.13 0.00 0.00 2.57
1234 1261 4.811024 GGTGATGCTCGAGTCATTTCATTA 59.189 41.667 15.13 1.71 0.00 1.90
1235 1262 5.277058 GGTGATGCTCGAGTCATTTCATTAC 60.277 44.000 15.13 13.22 0.00 1.89
1236 1263 5.521735 GTGATGCTCGAGTCATTTCATTACT 59.478 40.000 15.13 0.00 0.00 2.24
1237 1264 6.036517 GTGATGCTCGAGTCATTTCATTACTT 59.963 38.462 15.13 0.00 0.00 2.24
1238 1265 6.595326 TGATGCTCGAGTCATTTCATTACTTT 59.405 34.615 15.13 0.00 0.00 2.66
1239 1266 6.801539 TGCTCGAGTCATTTCATTACTTTT 57.198 33.333 15.13 0.00 0.00 2.27
1240 1267 7.202016 TGCTCGAGTCATTTCATTACTTTTT 57.798 32.000 15.13 0.00 0.00 1.94
1241 1268 8.317891 TGCTCGAGTCATTTCATTACTTTTTA 57.682 30.769 15.13 0.00 0.00 1.52
1242 1269 8.946085 TGCTCGAGTCATTTCATTACTTTTTAT 58.054 29.630 15.13 0.00 0.00 1.40
1243 1270 9.774742 GCTCGAGTCATTTCATTACTTTTTATT 57.225 29.630 15.13 0.00 0.00 1.40
1309 1337 1.408266 CCTAAAGGGAATGGGTGACGG 60.408 57.143 0.00 0.00 37.23 4.79
1325 1353 1.154016 CGGCGATGAGTTCTCGTGT 60.154 57.895 0.00 0.00 38.37 4.49
1389 1561 7.094975 TGGTCATGATTAACTCGGTGTTTTTAG 60.095 37.037 0.00 0.00 39.89 1.85
1403 1575 5.401376 GGTGTTTTTAGAACGAAGAAATGCC 59.599 40.000 0.00 0.00 0.00 4.40
1418 1597 1.442769 ATGCCGTCATGACAGTGAAC 58.557 50.000 24.93 7.99 0.00 3.18
1424 1607 3.618594 CCGTCATGACAGTGAACTAATGG 59.381 47.826 24.93 9.74 0.00 3.16
1460 1643 8.568676 TCATTTTGGTAAAATAATCCGAGTCA 57.431 30.769 0.00 0.00 38.97 3.41
1475 1658 2.447443 GAGTCAAGGAAATGGGGGTTC 58.553 52.381 0.00 0.00 0.00 3.62
1518 1705 0.885879 CATGCACACATTCCTGCACT 59.114 50.000 0.00 0.00 45.91 4.40
1521 1708 0.665369 GCACACATTCCTGCACTTGC 60.665 55.000 0.00 0.00 42.50 4.01
1522 1709 0.956633 CACACATTCCTGCACTTGCT 59.043 50.000 2.33 0.00 42.66 3.91
1634 1821 2.160615 CGGGCTCATCATAGTAGACGAG 59.839 54.545 0.00 0.00 31.39 4.18
1637 1824 3.189702 GGCTCATCATAGTAGACGAGACC 59.810 52.174 0.00 0.00 29.81 3.85
1651 1838 4.038162 AGACGAGACCCATGAGCTAATTAC 59.962 45.833 0.00 0.00 0.00 1.89
1695 1882 1.936547 CTAGCCAGGCGTCTGATTTTC 59.063 52.381 20.91 1.87 43.49 2.29
1731 1918 1.446966 GCTTGGCTCCGAGACAGAC 60.447 63.158 3.62 0.00 32.83 3.51
2088 2275 1.069906 CGTTCAGACTTTGGCCTTTCG 60.070 52.381 3.32 0.00 0.00 3.46
2146 2333 8.861033 TGTAATGTCGTACATATTCAGGTAAC 57.139 34.615 0.00 0.00 37.97 2.50
2399 2586 2.642171 TGTGGAAGGTAGATCCCTGT 57.358 50.000 0.00 0.00 36.04 4.00
2416 2789 6.229936 TCCCTGTTGGTCTGTAACATATAC 57.770 41.667 0.00 0.00 37.41 1.47
2421 2794 7.439356 CCTGTTGGTCTGTAACATATACATGAG 59.561 40.741 0.00 0.00 37.41 2.90
2579 2953 4.862574 TGCATGTACTAGCTTTCTGTTACG 59.137 41.667 10.62 0.00 0.00 3.18
2691 3067 9.771534 TTTGCTTGTTTATTAGTAATTTGCCTT 57.228 25.926 0.00 0.00 0.00 4.35
2854 3244 4.693095 TGCAGCTGTCAAACGATATTTACA 59.307 37.500 16.64 0.00 0.00 2.41
2915 3305 7.668052 CCTGGTAGAGAATACAGTAGCTAGATT 59.332 40.741 0.00 0.00 0.00 2.40
2956 3347 8.746530 TCGGATTGTCATCTTATAGTTATACCC 58.253 37.037 0.00 0.00 0.00 3.69
3103 3498 3.006112 TCTTCGGTACTCTGAGCTGAT 57.994 47.619 4.19 0.00 0.00 2.90
3119 3514 7.004555 TGAGCTGATTAGTTTCCTTAACAGA 57.995 36.000 0.00 0.00 39.30 3.41
3212 3607 2.241160 TCTAAGTACAGTGGACGCCAA 58.759 47.619 0.00 0.00 34.18 4.52
3568 3963 2.642311 TCAGTCTAAAGGGCATGTTGGA 59.358 45.455 0.00 0.00 0.00 3.53
3668 4063 9.472361 CAGCCTTGTATATACTTGTATTTACGT 57.528 33.333 13.89 0.00 0.00 3.57
3712 4107 5.483685 AAGTCGCATAATATAGGGCTCAA 57.516 39.130 0.00 0.00 0.00 3.02
3740 4135 7.971183 TGCTTATGTGTTGTGATGTTTACTA 57.029 32.000 0.00 0.00 0.00 1.82
3748 4143 8.908903 TGTGTTGTGATGTTTACTATTTTCCTT 58.091 29.630 0.00 0.00 0.00 3.36
3827 4222 8.641498 AACATAACAAGAGGATTGATTGAACT 57.359 30.769 0.00 0.00 0.00 3.01
3881 4276 8.853077 TGATGATTAGTTGATCTGTTTCTGTT 57.147 30.769 0.00 0.00 0.00 3.16
3966 4361 2.724977 TGTTCTGTTCTGCTAGTCCG 57.275 50.000 0.00 0.00 0.00 4.79
3982 4377 2.900546 AGTCCGTCTCTGTGAATTTCCT 59.099 45.455 0.00 0.00 0.00 3.36
3995 4390 9.605275 TCTGTGAATTTCCTAAATAGATGTCAG 57.395 33.333 0.00 0.00 0.00 3.51
4103 4500 2.503869 ATCTGCCTCTACCCCTTCAT 57.496 50.000 0.00 0.00 0.00 2.57
4112 4510 5.429130 CCTCTACCCCTTCATACTTCAAAC 58.571 45.833 0.00 0.00 0.00 2.93
4119 4517 4.524328 CCCTTCATACTTCAAACCTTTGCT 59.476 41.667 0.00 0.00 38.05 3.91
4145 4543 8.059798 AGGATTCTAATCAAATTGGTCAACAG 57.940 34.615 5.15 0.00 37.15 3.16
4157 4555 4.061357 TGGTCAACAGACAACGTCAATA 57.939 40.909 0.00 0.00 34.60 1.90
4158 4556 4.443621 TGGTCAACAGACAACGTCAATAA 58.556 39.130 0.00 0.00 34.60 1.40
4159 4557 4.876679 TGGTCAACAGACAACGTCAATAAA 59.123 37.500 0.00 0.00 34.60 1.40
4164 4563 8.803799 GTCAACAGACAACGTCAATAAATTTTT 58.196 29.630 0.00 0.00 34.60 1.94
4337 4736 2.957402 TCTCATTCTGGTGCCTTTGT 57.043 45.000 0.00 0.00 0.00 2.83
4338 4737 2.507484 TCTCATTCTGGTGCCTTTGTG 58.493 47.619 0.00 0.00 0.00 3.33
4343 4742 1.388547 TCTGGTGCCTTTGTGTGTTC 58.611 50.000 0.00 0.00 0.00 3.18
4364 4763 3.061322 CCGAAACTGATGTCGTAAACCA 58.939 45.455 0.00 0.00 35.48 3.67
4375 4774 7.847487 TGATGTCGTAAACCATTATCGAAATC 58.153 34.615 8.48 8.48 38.32 2.17
4376 4775 7.492994 TGATGTCGTAAACCATTATCGAAATCA 59.507 33.333 12.57 12.57 41.09 2.57
4435 4835 8.699283 AGTAATTATTCTTCCGAAGTGTGTAC 57.301 34.615 8.01 5.17 31.60 2.90
4458 4858 9.127277 GTACCCATGGTTTATTGTTATGTATGT 57.873 33.333 11.73 0.00 37.09 2.29
4459 4859 8.232913 ACCCATGGTTTATTGTTATGTATGTC 57.767 34.615 11.73 0.00 27.29 3.06
4521 4921 4.502087 CCTCGCAGATCACTGATATTGGAA 60.502 45.833 0.00 0.00 46.03 3.53
4528 4928 7.443575 GCAGATCACTGATATTGGAACTATGTT 59.556 37.037 0.00 0.00 46.03 2.71
4586 4989 4.747810 CTCCATGTTTATCCAAGGCAAAC 58.252 43.478 8.39 8.39 33.70 2.93
4594 4997 1.981256 TCCAAGGCAAACCAGAGTTC 58.019 50.000 0.00 0.00 39.06 3.01
4657 5060 4.900635 CAACCTTTGTTGCTACTCTTGT 57.099 40.909 0.00 0.00 44.86 3.16
4687 5090 5.689961 GCGTGAAATACTGGAATTGTTGTTT 59.310 36.000 0.00 0.00 0.00 2.83
4707 5110 9.683069 GTTGTTTGATGTTTTCTCTTATGTCAT 57.317 29.630 0.00 0.00 0.00 3.06
4761 5164 6.857437 TTTGTCTTCATATGGTCTCAGAGA 57.143 37.500 2.13 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.584325 TGCAAATTGGACAAGCTAGTTCTT 59.416 37.500 0.00 0.00 0.00 2.52
1 2 4.022849 GTGCAAATTGGACAAGCTAGTTCT 60.023 41.667 12.74 0.00 38.66 3.01
2 3 4.229876 GTGCAAATTGGACAAGCTAGTTC 58.770 43.478 12.74 0.00 38.66 3.01
3 4 3.636300 TGTGCAAATTGGACAAGCTAGTT 59.364 39.130 17.73 0.00 45.65 2.24
4 5 3.221771 TGTGCAAATTGGACAAGCTAGT 58.778 40.909 17.73 0.00 45.65 2.57
5 6 3.921119 TGTGCAAATTGGACAAGCTAG 57.079 42.857 17.73 0.00 45.65 3.42
11 12 2.653726 ACTCACTGTGCAAATTGGACA 58.346 42.857 18.79 18.79 46.44 4.02
12 13 3.815401 AGTACTCACTGTGCAAATTGGAC 59.185 43.478 10.77 10.77 39.30 4.02
13 14 4.065088 GAGTACTCACTGTGCAAATTGGA 58.935 43.478 18.20 0.00 34.21 3.53
14 15 4.067896 AGAGTACTCACTGTGCAAATTGG 58.932 43.478 24.44 0.00 34.21 3.16
15 16 4.153117 GGAGAGTACTCACTGTGCAAATTG 59.847 45.833 24.44 0.00 44.22 2.32
16 17 4.319177 GGAGAGTACTCACTGTGCAAATT 58.681 43.478 24.44 0.00 44.22 1.82
17 18 3.615110 CGGAGAGTACTCACTGTGCAAAT 60.615 47.826 24.44 0.00 44.22 2.32
18 19 2.288213 CGGAGAGTACTCACTGTGCAAA 60.288 50.000 24.44 0.00 44.22 3.68
19 20 1.269723 CGGAGAGTACTCACTGTGCAA 59.730 52.381 24.44 0.00 44.22 4.08
20 21 0.881796 CGGAGAGTACTCACTGTGCA 59.118 55.000 24.44 0.00 44.22 4.57
21 22 0.882474 ACGGAGAGTACTCACTGTGC 59.118 55.000 27.55 11.64 44.22 4.57
22 23 2.922758 GCAACGGAGAGTACTCACTGTG 60.923 54.545 28.43 22.70 44.22 3.66
23 24 1.269998 GCAACGGAGAGTACTCACTGT 59.730 52.381 24.11 24.11 44.22 3.55
24 25 1.269723 TGCAACGGAGAGTACTCACTG 59.730 52.381 24.44 23.62 44.22 3.66
25 26 1.269998 GTGCAACGGAGAGTACTCACT 59.730 52.381 24.44 4.90 44.22 3.41
26 27 1.000607 TGTGCAACGGAGAGTACTCAC 60.001 52.381 24.44 17.98 42.39 3.51
27 28 1.324383 TGTGCAACGGAGAGTACTCA 58.676 50.000 24.44 0.00 42.39 3.41
28 29 2.656560 ATGTGCAACGGAGAGTACTC 57.343 50.000 15.41 15.41 42.39 2.59
29 30 3.402628 AAATGTGCAACGGAGAGTACT 57.597 42.857 0.00 0.00 42.39 2.73
30 31 4.483476 AAAAATGTGCAACGGAGAGTAC 57.517 40.909 0.00 0.00 42.39 2.73
31 32 5.407387 GTCTAAAAATGTGCAACGGAGAGTA 59.593 40.000 0.00 0.00 42.39 2.59
32 33 4.213482 GTCTAAAAATGTGCAACGGAGAGT 59.787 41.667 0.00 0.00 42.39 3.24
33 34 4.213270 TGTCTAAAAATGTGCAACGGAGAG 59.787 41.667 0.00 0.00 42.39 3.20
34 35 4.130857 TGTCTAAAAATGTGCAACGGAGA 58.869 39.130 0.00 0.00 42.39 3.71
35 36 4.481930 TGTCTAAAAATGTGCAACGGAG 57.518 40.909 0.00 0.00 42.39 4.63
36 37 5.446143 AATGTCTAAAAATGTGCAACGGA 57.554 34.783 0.00 0.00 42.39 4.69
37 38 4.621034 GGAATGTCTAAAAATGTGCAACGG 59.379 41.667 0.00 0.00 42.39 4.44
38 39 4.320690 CGGAATGTCTAAAAATGTGCAACG 59.679 41.667 0.00 0.00 42.39 4.10
39 40 5.116983 CACGGAATGTCTAAAAATGTGCAAC 59.883 40.000 0.00 0.00 37.35 4.17
40 41 5.218885 CACGGAATGTCTAAAAATGTGCAA 58.781 37.500 0.00 0.00 0.00 4.08
41 42 4.793071 CACGGAATGTCTAAAAATGTGCA 58.207 39.130 0.00 0.00 0.00 4.57
42 43 3.608073 GCACGGAATGTCTAAAAATGTGC 59.392 43.478 0.00 0.00 42.58 4.57
43 44 3.845775 CGCACGGAATGTCTAAAAATGTG 59.154 43.478 0.00 0.00 0.00 3.21
44 45 3.749088 TCGCACGGAATGTCTAAAAATGT 59.251 39.130 0.00 0.00 0.00 2.71
45 46 4.335082 TCGCACGGAATGTCTAAAAATG 57.665 40.909 0.00 0.00 0.00 2.32
46 47 5.365403 TTTCGCACGGAATGTCTAAAAAT 57.635 34.783 0.00 0.00 33.85 1.82
47 48 4.815040 TTTCGCACGGAATGTCTAAAAA 57.185 36.364 0.00 0.00 33.85 1.94
48 49 6.671614 ATATTTCGCACGGAATGTCTAAAA 57.328 33.333 6.82 0.00 33.85 1.52
49 50 6.671614 AATATTTCGCACGGAATGTCTAAA 57.328 33.333 6.82 0.00 33.85 1.85
50 51 6.092944 ACAAATATTTCGCACGGAATGTCTAA 59.907 34.615 6.82 0.00 33.85 2.10
51 52 5.583061 ACAAATATTTCGCACGGAATGTCTA 59.417 36.000 6.82 0.00 33.85 2.59
52 53 4.394920 ACAAATATTTCGCACGGAATGTCT 59.605 37.500 6.82 0.00 33.85 3.41
53 54 4.495472 CACAAATATTTCGCACGGAATGTC 59.505 41.667 6.82 0.00 33.85 3.06
54 55 4.083003 ACACAAATATTTCGCACGGAATGT 60.083 37.500 6.82 0.00 33.85 2.71
55 56 4.411327 ACACAAATATTTCGCACGGAATG 58.589 39.130 6.82 0.00 33.85 2.67
56 57 4.695217 ACACAAATATTTCGCACGGAAT 57.305 36.364 1.66 1.66 33.85 3.01
57 58 4.491234 AACACAAATATTTCGCACGGAA 57.509 36.364 0.00 0.00 0.00 4.30
58 59 5.179742 AGTTAACACAAATATTTCGCACGGA 59.820 36.000 8.61 0.00 0.00 4.69
59 60 5.387279 AGTTAACACAAATATTTCGCACGG 58.613 37.500 8.61 0.00 0.00 4.94
60 61 9.858247 ATATAGTTAACACAAATATTTCGCACG 57.142 29.630 8.61 0.00 0.00 5.34
71 72 9.781633 ACGGGCAATATATATAGTTAACACAAA 57.218 29.630 8.61 0.00 0.00 2.83
72 73 9.210329 CACGGGCAATATATATAGTTAACACAA 57.790 33.333 8.61 0.00 0.00 3.33
73 74 8.586744 TCACGGGCAATATATATAGTTAACACA 58.413 33.333 8.61 0.00 0.00 3.72
74 75 8.991243 TCACGGGCAATATATATAGTTAACAC 57.009 34.615 8.61 0.00 0.00 3.32
79 80 9.330063 CATCATTCACGGGCAATATATATAGTT 57.670 33.333 0.00 0.00 0.00 2.24
80 81 7.933577 CCATCATTCACGGGCAATATATATAGT 59.066 37.037 0.00 0.00 0.00 2.12
81 82 7.933577 ACCATCATTCACGGGCAATATATATAG 59.066 37.037 0.00 0.00 0.00 1.31
82 83 7.801104 ACCATCATTCACGGGCAATATATATA 58.199 34.615 0.00 0.00 0.00 0.86
83 84 6.662755 ACCATCATTCACGGGCAATATATAT 58.337 36.000 0.00 0.00 0.00 0.86
84 85 6.061022 ACCATCATTCACGGGCAATATATA 57.939 37.500 0.00 0.00 0.00 0.86
85 86 4.922206 ACCATCATTCACGGGCAATATAT 58.078 39.130 0.00 0.00 0.00 0.86
86 87 4.365514 ACCATCATTCACGGGCAATATA 57.634 40.909 0.00 0.00 0.00 0.86
87 88 3.228188 ACCATCATTCACGGGCAATAT 57.772 42.857 0.00 0.00 0.00 1.28
88 89 2.727123 ACCATCATTCACGGGCAATA 57.273 45.000 0.00 0.00 0.00 1.90
89 90 1.851304 AACCATCATTCACGGGCAAT 58.149 45.000 0.00 0.00 0.00 3.56
90 91 2.498644 TAACCATCATTCACGGGCAA 57.501 45.000 0.00 0.00 0.00 4.52
91 92 2.092699 TCATAACCATCATTCACGGGCA 60.093 45.455 0.00 0.00 0.00 5.36
92 93 2.549754 CTCATAACCATCATTCACGGGC 59.450 50.000 0.00 0.00 0.00 6.13
93 94 3.808728 ACTCATAACCATCATTCACGGG 58.191 45.455 0.00 0.00 0.00 5.28
94 95 4.875536 TCAACTCATAACCATCATTCACGG 59.124 41.667 0.00 0.00 0.00 4.94
95 96 5.812127 TCTCAACTCATAACCATCATTCACG 59.188 40.000 0.00 0.00 0.00 4.35
96 97 7.615582 TTCTCAACTCATAACCATCATTCAC 57.384 36.000 0.00 0.00 0.00 3.18
97 98 8.102676 TCTTTCTCAACTCATAACCATCATTCA 58.897 33.333 0.00 0.00 0.00 2.57
98 99 8.498054 TCTTTCTCAACTCATAACCATCATTC 57.502 34.615 0.00 0.00 0.00 2.67
99 100 8.868522 TTCTTTCTCAACTCATAACCATCATT 57.131 30.769 0.00 0.00 0.00 2.57
100 101 8.105829 ACTTCTTTCTCAACTCATAACCATCAT 58.894 33.333 0.00 0.00 0.00 2.45
101 102 7.453393 ACTTCTTTCTCAACTCATAACCATCA 58.547 34.615 0.00 0.00 0.00 3.07
102 103 7.913674 ACTTCTTTCTCAACTCATAACCATC 57.086 36.000 0.00 0.00 0.00 3.51
103 104 8.697507 AAACTTCTTTCTCAACTCATAACCAT 57.302 30.769 0.00 0.00 0.00 3.55
104 105 8.519799 AAAACTTCTTTCTCAACTCATAACCA 57.480 30.769 0.00 0.00 0.00 3.67
134 135 9.325198 TCATTCGTACAATATTTGAGCAAGTAT 57.675 29.630 0.00 0.00 0.00 2.12
135 136 8.710835 TCATTCGTACAATATTTGAGCAAGTA 57.289 30.769 0.00 0.00 0.00 2.24
136 137 7.609760 TCATTCGTACAATATTTGAGCAAGT 57.390 32.000 0.00 0.00 0.00 3.16
137 138 7.164826 GCTTCATTCGTACAATATTTGAGCAAG 59.835 37.037 0.00 0.00 0.00 4.01
138 139 6.966632 GCTTCATTCGTACAATATTTGAGCAA 59.033 34.615 0.00 0.00 0.00 3.91
139 140 6.316140 AGCTTCATTCGTACAATATTTGAGCA 59.684 34.615 0.00 0.00 0.00 4.26
140 141 6.719365 AGCTTCATTCGTACAATATTTGAGC 58.281 36.000 0.00 0.00 0.00 4.26
145 146 9.378551 TGTCTTTAGCTTCATTCGTACAATATT 57.621 29.630 0.00 0.00 0.00 1.28
146 147 8.942338 TGTCTTTAGCTTCATTCGTACAATAT 57.058 30.769 0.00 0.00 0.00 1.28
147 148 8.653338 GTTGTCTTTAGCTTCATTCGTACAATA 58.347 33.333 0.00 0.00 0.00 1.90
148 149 7.172532 TGTTGTCTTTAGCTTCATTCGTACAAT 59.827 33.333 0.00 0.00 0.00 2.71
149 150 6.480651 TGTTGTCTTTAGCTTCATTCGTACAA 59.519 34.615 0.00 0.00 0.00 2.41
150 151 5.986741 TGTTGTCTTTAGCTTCATTCGTACA 59.013 36.000 0.00 0.00 0.00 2.90
151 152 6.462073 TGTTGTCTTTAGCTTCATTCGTAC 57.538 37.500 0.00 0.00 0.00 3.67
152 153 7.148474 GGAATGTTGTCTTTAGCTTCATTCGTA 60.148 37.037 0.00 0.00 39.89 3.43
153 154 6.348540 GGAATGTTGTCTTTAGCTTCATTCGT 60.349 38.462 0.00 0.00 39.89 3.85
154 155 6.024049 GGAATGTTGTCTTTAGCTTCATTCG 58.976 40.000 0.00 0.00 39.89 3.34
155 156 7.150783 AGGAATGTTGTCTTTAGCTTCATTC 57.849 36.000 0.00 0.00 38.95 2.67
156 157 7.530426 AAGGAATGTTGTCTTTAGCTTCATT 57.470 32.000 0.00 0.00 0.00 2.57
157 158 7.530426 AAAGGAATGTTGTCTTTAGCTTCAT 57.470 32.000 0.00 0.00 0.00 2.57
158 159 6.959639 AAAGGAATGTTGTCTTTAGCTTCA 57.040 33.333 0.00 0.00 0.00 3.02
162 163 9.237846 GCAATATAAAGGAATGTTGTCTTTAGC 57.762 33.333 0.00 0.00 36.71 3.09
165 166 7.754924 CGTGCAATATAAAGGAATGTTGTCTTT 59.245 33.333 0.00 0.00 32.36 2.52
166 167 7.120579 TCGTGCAATATAAAGGAATGTTGTCTT 59.879 33.333 0.00 0.00 32.36 3.01
167 168 6.597672 TCGTGCAATATAAAGGAATGTTGTCT 59.402 34.615 0.00 0.00 32.36 3.41
168 169 6.781138 TCGTGCAATATAAAGGAATGTTGTC 58.219 36.000 0.00 0.00 32.36 3.18
169 170 6.597672 TCTCGTGCAATATAAAGGAATGTTGT 59.402 34.615 0.00 0.00 32.36 3.32
170 171 7.015226 TCTCGTGCAATATAAAGGAATGTTG 57.985 36.000 0.00 0.00 32.77 3.33
171 172 7.624360 TTCTCGTGCAATATAAAGGAATGTT 57.376 32.000 0.00 0.00 0.00 2.71
172 173 7.807977 ATTCTCGTGCAATATAAAGGAATGT 57.192 32.000 0.00 0.00 0.00 2.71
183 184 9.251792 ACGTGTTTAATATATTCTCGTGCAATA 57.748 29.630 0.00 0.00 0.00 1.90
184 185 8.138365 ACGTGTTTAATATATTCTCGTGCAAT 57.862 30.769 0.00 0.00 0.00 3.56
185 186 7.275999 TGACGTGTTTAATATATTCTCGTGCAA 59.724 33.333 13.93 0.00 0.00 4.08
186 187 6.752815 TGACGTGTTTAATATATTCTCGTGCA 59.247 34.615 13.93 10.27 0.00 4.57
187 188 7.157050 TGACGTGTTTAATATATTCTCGTGC 57.843 36.000 13.93 8.66 0.00 5.34
188 189 8.804743 ACTTGACGTGTTTAATATATTCTCGTG 58.195 33.333 13.93 6.22 0.00 4.35
189 190 8.922058 ACTTGACGTGTTTAATATATTCTCGT 57.078 30.769 0.00 6.82 0.00 4.18
201 202 9.362539 GGAATTAAGATCTACTTGACGTGTTTA 57.637 33.333 0.00 0.00 39.38 2.01
202 203 8.095169 AGGAATTAAGATCTACTTGACGTGTTT 58.905 33.333 0.00 0.00 39.38 2.83
203 204 7.612677 AGGAATTAAGATCTACTTGACGTGTT 58.387 34.615 0.00 0.00 39.38 3.32
204 205 7.171630 AGGAATTAAGATCTACTTGACGTGT 57.828 36.000 0.00 0.00 39.38 4.49
205 206 9.021863 GTTAGGAATTAAGATCTACTTGACGTG 57.978 37.037 0.00 0.00 39.38 4.49
206 207 8.746530 TGTTAGGAATTAAGATCTACTTGACGT 58.253 33.333 0.00 0.00 39.38 4.34
207 208 9.582431 TTGTTAGGAATTAAGATCTACTTGACG 57.418 33.333 0.00 0.00 39.38 4.35
227 228 9.599322 GCGATGATCCAACTAATAATTTGTTAG 57.401 33.333 10.38 10.38 35.72 2.34
228 229 9.337396 AGCGATGATCCAACTAATAATTTGTTA 57.663 29.630 0.00 0.00 0.00 2.41
229 230 8.225603 AGCGATGATCCAACTAATAATTTGTT 57.774 30.769 0.00 0.00 0.00 2.83
230 231 7.716998 AGAGCGATGATCCAACTAATAATTTGT 59.283 33.333 0.00 0.00 0.00 2.83
231 232 8.092521 AGAGCGATGATCCAACTAATAATTTG 57.907 34.615 0.00 0.00 0.00 2.32
232 233 8.153550 AGAGAGCGATGATCCAACTAATAATTT 58.846 33.333 0.00 0.00 0.00 1.82
233 234 7.601886 CAGAGAGCGATGATCCAACTAATAATT 59.398 37.037 0.00 0.00 0.00 1.40
234 235 7.095910 CAGAGAGCGATGATCCAACTAATAAT 58.904 38.462 0.00 0.00 0.00 1.28
235 236 6.040955 ACAGAGAGCGATGATCCAACTAATAA 59.959 38.462 0.00 0.00 0.00 1.40
236 237 5.536538 ACAGAGAGCGATGATCCAACTAATA 59.463 40.000 0.00 0.00 0.00 0.98
237 238 4.343526 ACAGAGAGCGATGATCCAACTAAT 59.656 41.667 0.00 0.00 0.00 1.73
238 239 3.701542 ACAGAGAGCGATGATCCAACTAA 59.298 43.478 0.00 0.00 0.00 2.24
239 240 3.067320 CACAGAGAGCGATGATCCAACTA 59.933 47.826 0.00 0.00 0.00 2.24
240 241 2.106566 ACAGAGAGCGATGATCCAACT 58.893 47.619 0.00 0.00 0.00 3.16
241 242 2.200067 CACAGAGAGCGATGATCCAAC 58.800 52.381 0.00 0.00 0.00 3.77
242 243 1.827344 ACACAGAGAGCGATGATCCAA 59.173 47.619 0.00 0.00 0.00 3.53
243 244 1.478631 ACACAGAGAGCGATGATCCA 58.521 50.000 0.00 0.00 0.00 3.41
244 245 3.932545 ATACACAGAGAGCGATGATCC 57.067 47.619 0.00 0.00 0.00 3.36
245 246 5.363979 TGTATACACAGAGAGCGATGATC 57.636 43.478 0.08 0.00 0.00 2.92
246 247 5.391416 CGATGTATACACAGAGAGCGATGAT 60.391 44.000 7.96 0.00 38.30 2.45
247 248 4.083802 CGATGTATACACAGAGAGCGATGA 60.084 45.833 7.96 0.00 38.30 2.92
248 249 4.154717 CGATGTATACACAGAGAGCGATG 58.845 47.826 7.96 0.00 38.30 3.84
249 250 3.815962 ACGATGTATACACAGAGAGCGAT 59.184 43.478 7.96 0.00 38.30 4.58
250 251 3.203716 ACGATGTATACACAGAGAGCGA 58.796 45.455 7.96 0.00 38.30 4.93
251 252 3.002348 TGACGATGTATACACAGAGAGCG 59.998 47.826 7.96 1.02 38.30 5.03
252 253 4.553756 TGACGATGTATACACAGAGAGC 57.446 45.455 7.96 0.00 38.30 4.09
253 254 7.993821 AATTTGACGATGTATACACAGAGAG 57.006 36.000 7.96 0.00 38.30 3.20
254 255 8.683615 AGTAATTTGACGATGTATACACAGAGA 58.316 33.333 7.96 0.00 38.30 3.10
255 256 8.858003 AGTAATTTGACGATGTATACACAGAG 57.142 34.615 7.96 2.67 38.30 3.35
256 257 9.647797 AAAGTAATTTGACGATGTATACACAGA 57.352 29.630 7.96 0.00 38.30 3.41
276 277 7.981789 TGCAATGTTGGTCATTACAAAAAGTAA 59.018 29.630 0.00 0.00 43.93 2.24
277 278 7.492524 TGCAATGTTGGTCATTACAAAAAGTA 58.507 30.769 0.00 0.00 43.93 2.24
278 279 6.344500 TGCAATGTTGGTCATTACAAAAAGT 58.656 32.000 0.00 0.00 43.93 2.66
279 280 6.841443 TGCAATGTTGGTCATTACAAAAAG 57.159 33.333 0.00 0.00 43.93 2.27
280 281 6.820656 ACTTGCAATGTTGGTCATTACAAAAA 59.179 30.769 0.00 0.00 44.27 1.94
281 282 6.257411 CACTTGCAATGTTGGTCATTACAAAA 59.743 34.615 0.00 0.00 44.27 2.44
282 283 5.752472 CACTTGCAATGTTGGTCATTACAAA 59.248 36.000 0.00 0.00 44.27 2.83
283 284 5.068329 TCACTTGCAATGTTGGTCATTACAA 59.932 36.000 0.00 6.21 43.38 2.41
284 285 4.582240 TCACTTGCAATGTTGGTCATTACA 59.418 37.500 0.00 0.00 43.93 2.41
285 286 5.119931 TCACTTGCAATGTTGGTCATTAC 57.880 39.130 0.00 0.00 43.93 1.89
286 287 5.301551 ACTTCACTTGCAATGTTGGTCATTA 59.698 36.000 0.00 0.00 43.93 1.90
287 288 4.099881 ACTTCACTTGCAATGTTGGTCATT 59.900 37.500 0.00 0.00 46.32 2.57
288 289 3.638160 ACTTCACTTGCAATGTTGGTCAT 59.362 39.130 0.00 0.00 38.57 3.06
289 290 3.023119 ACTTCACTTGCAATGTTGGTCA 58.977 40.909 0.00 0.00 0.00 4.02
290 291 3.715628 ACTTCACTTGCAATGTTGGTC 57.284 42.857 0.00 0.00 0.00 4.02
291 292 4.460263 TCTACTTCACTTGCAATGTTGGT 58.540 39.130 0.00 0.00 0.00 3.67
292 293 5.633830 ATCTACTTCACTTGCAATGTTGG 57.366 39.130 0.00 0.00 0.00 3.77
293 294 7.584108 TGTAATCTACTTCACTTGCAATGTTG 58.416 34.615 0.00 0.00 0.00 3.33
294 295 7.744087 TGTAATCTACTTCACTTGCAATGTT 57.256 32.000 0.00 0.00 0.00 2.71
295 296 7.744087 TTGTAATCTACTTCACTTGCAATGT 57.256 32.000 0.00 0.00 0.00 2.71
345 346 7.760131 GCATAATGCATGTTAAGTTTCACAT 57.240 32.000 0.00 0.00 44.26 3.21
382 383 9.267084 CCACGGGGATTTAAAATATTTTATTGG 57.733 33.333 18.87 8.51 35.59 3.16
383 384 8.769891 GCCACGGGGATTTAAAATATTTTATTG 58.230 33.333 18.87 8.43 35.59 1.90
384 385 8.487028 TGCCACGGGGATTTAAAATATTTTATT 58.513 29.630 18.87 11.19 35.59 1.40
385 386 8.024145 TGCCACGGGGATTTAAAATATTTTAT 57.976 30.769 18.87 8.38 35.59 1.40
386 387 7.419711 TGCCACGGGGATTTAAAATATTTTA 57.580 32.000 8.67 15.19 35.59 1.52
387 388 6.301169 TGCCACGGGGATTTAAAATATTTT 57.699 33.333 8.67 17.18 35.59 1.82
388 389 5.941555 TGCCACGGGGATTTAAAATATTT 57.058 34.783 8.67 0.00 35.59 1.40
389 390 5.666462 GTTGCCACGGGGATTTAAAATATT 58.334 37.500 8.67 0.00 35.59 1.28
390 391 4.202070 CGTTGCCACGGGGATTTAAAATAT 60.202 41.667 8.67 0.00 43.16 1.28
391 392 3.128938 CGTTGCCACGGGGATTTAAAATA 59.871 43.478 8.67 0.00 43.16 1.40
392 393 2.094442 CGTTGCCACGGGGATTTAAAAT 60.094 45.455 8.67 0.00 43.16 1.82
393 394 1.269998 CGTTGCCACGGGGATTTAAAA 59.730 47.619 8.67 0.00 43.16 1.52
394 395 0.882474 CGTTGCCACGGGGATTTAAA 59.118 50.000 8.67 0.00 43.16 1.52
395 396 2.557451 CGTTGCCACGGGGATTTAA 58.443 52.632 8.67 0.00 43.16 1.52
396 397 4.305011 CGTTGCCACGGGGATTTA 57.695 55.556 8.67 0.00 43.16 1.40
405 406 3.211564 AATGCCTGTGCGTTGCCAC 62.212 57.895 0.00 0.00 44.90 5.01
406 407 2.911509 AATGCCTGTGCGTTGCCA 60.912 55.556 0.00 0.00 44.90 4.92
407 408 2.126346 GAATGCCTGTGCGTTGCC 60.126 61.111 0.00 0.00 46.55 4.52
408 409 1.443194 CAGAATGCCTGTGCGTTGC 60.443 57.895 0.00 0.00 46.55 4.17
409 410 4.853507 CAGAATGCCTGTGCGTTG 57.146 55.556 0.00 0.00 46.55 4.10
420 421 7.601073 TCAAACTACATCAACTAGCAGAATG 57.399 36.000 0.00 0.00 40.87 2.67
421 422 9.539825 CTATCAAACTACATCAACTAGCAGAAT 57.460 33.333 0.00 0.00 0.00 2.40
422 423 8.531982 ACTATCAAACTACATCAACTAGCAGAA 58.468 33.333 0.00 0.00 0.00 3.02
423 424 7.976175 CACTATCAAACTACATCAACTAGCAGA 59.024 37.037 0.00 0.00 0.00 4.26
424 425 7.223582 CCACTATCAAACTACATCAACTAGCAG 59.776 40.741 0.00 0.00 0.00 4.24
425 426 7.041721 CCACTATCAAACTACATCAACTAGCA 58.958 38.462 0.00 0.00 0.00 3.49
426 427 7.010552 CACCACTATCAAACTACATCAACTAGC 59.989 40.741 0.00 0.00 0.00 3.42
427 428 7.492669 CCACCACTATCAAACTACATCAACTAG 59.507 40.741 0.00 0.00 0.00 2.57
428 429 7.179516 TCCACCACTATCAAACTACATCAACTA 59.820 37.037 0.00 0.00 0.00 2.24
429 430 6.013725 TCCACCACTATCAAACTACATCAACT 60.014 38.462 0.00 0.00 0.00 3.16
430 431 6.170506 TCCACCACTATCAAACTACATCAAC 58.829 40.000 0.00 0.00 0.00 3.18
431 432 6.367374 TCCACCACTATCAAACTACATCAA 57.633 37.500 0.00 0.00 0.00 2.57
432 433 6.384015 AGATCCACCACTATCAAACTACATCA 59.616 38.462 0.00 0.00 0.00 3.07
444 445 2.603021 AGCGATCAGATCCACCACTAT 58.397 47.619 4.73 0.00 0.00 2.12
445 446 2.073252 AGCGATCAGATCCACCACTA 57.927 50.000 4.73 0.00 0.00 2.74
486 489 5.109903 AGTCAGCAAATAGTAAAGTAGGCG 58.890 41.667 0.00 0.00 0.00 5.52
558 561 2.991250 ACATACACATTGGGTCTCTGC 58.009 47.619 0.00 0.00 0.00 4.26
594 597 4.428294 TTTAAGATGGAGCATCAGGAGG 57.572 45.455 0.00 0.00 42.72 4.30
678 681 5.755849 ACTTTCCTCTTTTGTGGAGAGAAA 58.244 37.500 10.31 0.00 43.12 2.52
785 791 2.555123 GCCAAGATGAACGGCTGAA 58.445 52.632 0.00 0.00 42.78 3.02
873 886 2.742372 GGCTATATGGTGCGCGGG 60.742 66.667 8.83 0.00 0.00 6.13
944 970 2.346365 GGTCGGCGGTCTCCTTTT 59.654 61.111 7.21 0.00 0.00 2.27
945 971 2.920912 TGGTCGGCGGTCTCCTTT 60.921 61.111 7.21 0.00 0.00 3.11
946 972 3.692406 GTGGTCGGCGGTCTCCTT 61.692 66.667 7.21 0.00 0.00 3.36
1252 1279 9.251440 TGTACTACTAGTAATGAAATGACCAGT 57.749 33.333 3.76 0.00 31.62 4.00
1258 1285 9.871238 ACCACTTGTACTACTAGTAATGAAATG 57.129 33.333 3.76 0.00 32.65 2.32
1261 1288 9.745018 ACTACCACTTGTACTACTAGTAATGAA 57.255 33.333 3.76 0.00 32.65 2.57
1262 1289 9.745018 AACTACCACTTGTACTACTAGTAATGA 57.255 33.333 3.76 0.00 32.65 2.57
1264 1291 9.183368 GGAACTACCACTTGTACTACTAGTAAT 57.817 37.037 3.76 0.00 32.65 1.89
1289 1316 1.408266 CCGTCACCCATTCCCTTTAGG 60.408 57.143 0.00 0.00 0.00 2.69
1306 1334 1.154016 CACGAGAACTCATCGCCGT 60.154 57.895 0.00 0.00 43.91 5.68
1309 1337 4.842139 AATTAACACGAGAACTCATCGC 57.158 40.909 0.00 0.00 43.91 4.58
1389 1561 2.415168 TCATGACGGCATTTCTTCGTTC 59.585 45.455 0.00 0.00 37.25 3.95
1403 1575 3.062639 GCCATTAGTTCACTGTCATGACG 59.937 47.826 20.54 16.72 0.00 4.35
1418 1597 7.818930 ACCAAAATGATAAAACACAGCCATTAG 59.181 33.333 0.00 0.00 0.00 1.73
1460 1643 2.291346 CCTTACGAACCCCCATTTCCTT 60.291 50.000 0.00 0.00 0.00 3.36
1475 1658 2.332063 AACTGATGCATCCCCTTACG 57.668 50.000 23.67 6.13 0.00 3.18
1521 1708 6.019640 CAGGTTTGTTTGCACAATTAAGTGAG 60.020 38.462 10.35 2.62 42.66 3.51
1522 1709 5.809562 CAGGTTTGTTTGCACAATTAAGTGA 59.190 36.000 10.35 0.00 42.66 3.41
1634 1821 3.136626 AGGTGGTAATTAGCTCATGGGTC 59.863 47.826 15.27 0.00 0.00 4.46
1637 1824 4.156455 ACAGGTGGTAATTAGCTCATGG 57.844 45.455 25.67 14.14 34.56 3.66
1651 1838 4.272504 CCGCTATACACAAAATACAGGTGG 59.727 45.833 0.00 0.00 36.87 4.61
1695 1882 2.202932 CTCGCATCCCACTTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
1731 1918 2.622470 TCTGATCTTCATCCTCTCTGCG 59.378 50.000 0.00 0.00 0.00 5.18
1981 2168 4.994282 ACCCCCTTTAGTTTAAACCTGAG 58.006 43.478 14.72 9.51 0.00 3.35
1982 2169 5.406570 AACCCCCTTTAGTTTAAACCTGA 57.593 39.130 14.72 0.00 0.00 3.86
2088 2275 5.539979 ACAGATGCTATGTGATGAGTCATC 58.460 41.667 23.75 23.75 40.88 2.92
2156 2343 7.497249 ACCAGCTTGACAAATATTCAGATAGTC 59.503 37.037 0.00 0.00 0.00 2.59
2312 2499 1.613437 AGCCAAACACTAACATGCACC 59.387 47.619 0.00 0.00 0.00 5.01
2351 2538 3.758554 GGAAGATGCACAGGTTTACATGT 59.241 43.478 2.69 2.69 42.05 3.21
2399 2586 9.952030 TTTTCTCATGTATATGTTACAGACCAA 57.048 29.630 0.00 0.00 35.73 3.67
2416 2789 3.754850 TGTGGAGTCTGCATTTTCTCATG 59.245 43.478 0.00 0.00 0.00 3.07
2421 2794 5.627499 TGTATTGTGGAGTCTGCATTTTC 57.373 39.130 0.00 0.00 0.00 2.29
2474 2848 5.409520 AGGCATGCAGTTATATATGAACACG 59.590 40.000 21.36 0.00 0.00 4.49
2527 2901 4.398631 TGCAAACAAGCAACGCAG 57.601 50.000 0.00 0.00 42.46 5.18
2579 2953 4.503714 TGAATTGGGAGTATGGAGGAAC 57.496 45.455 0.00 0.00 0.00 3.62
2716 3092 6.660521 TCAATGAAGGCTGTCATGTAAAATCT 59.339 34.615 11.26 0.00 38.28 2.40
2835 3225 8.365210 CAACATTTGTAAATATCGTTTGACAGC 58.635 33.333 0.00 0.00 0.00 4.40
2854 3244 5.581874 CAGCCTCAAAAACAAGTCAACATTT 59.418 36.000 0.00 0.00 0.00 2.32
2873 3263 2.649816 ACCAGGAGAAAAATACCAGCCT 59.350 45.455 0.00 0.00 0.00 4.58
2915 3305 2.031258 TCCGACAAACAGAGTTGCAA 57.969 45.000 0.00 0.00 31.29 4.08
2956 3347 2.562635 CAGGAGATGACAATCAGCTGG 58.437 52.381 15.13 0.00 44.01 4.85
3103 3498 6.483974 TCGTGCAAATCTGTTAAGGAAACTAA 59.516 34.615 0.00 0.00 42.68 2.24
3119 3514 1.238439 CTGAACCCACTCGTGCAAAT 58.762 50.000 0.00 0.00 0.00 2.32
3212 3607 6.710597 AGAAATGATACATCAGCAAGCAAT 57.289 33.333 0.00 0.00 40.64 3.56
3568 3963 7.566879 AGAAACCTACCAGATCTAATGTCATCT 59.433 37.037 0.00 0.00 0.00 2.90
3626 4021 3.974719 AGGCTGAGACTGAAGTGATAGA 58.025 45.455 0.00 0.00 0.00 1.98
3688 4083 6.599356 TGAGCCCTATATTATGCGACTTAA 57.401 37.500 0.00 0.00 0.00 1.85
3695 4090 6.928520 AGCAAATTTGAGCCCTATATTATGC 58.071 36.000 22.31 0.87 0.00 3.14
3712 4107 8.977505 GTAAACATCACAACACATAAGCAAATT 58.022 29.630 0.00 0.00 0.00 1.82
3740 4135 6.659242 TCCGAATCTAAGCAAAGAAGGAAAAT 59.341 34.615 7.56 0.00 30.05 1.82
3748 4143 5.812642 GTCAGATTCCGAATCTAAGCAAAGA 59.187 40.000 20.81 10.96 46.20 2.52
3811 4206 6.611613 TCTACACAGTTCAATCAATCCTCT 57.388 37.500 0.00 0.00 0.00 3.69
3827 4222 4.416516 TCTTGACCTCCAGAATCTACACA 58.583 43.478 0.00 0.00 0.00 3.72
3966 4361 9.606631 ACATCTATTTAGGAAATTCACAGAGAC 57.393 33.333 0.00 0.00 32.38 3.36
3982 4377 4.607293 ATGCTCGCCTGACATCTATTTA 57.393 40.909 0.00 0.00 0.00 1.40
3995 4390 2.796593 GCATAAATGGAAAATGCTCGCC 59.203 45.455 0.00 0.00 42.15 5.54
4103 4500 6.779860 AGAATCCTAGCAAAGGTTTGAAGTA 58.220 36.000 6.63 0.00 46.62 2.24
4119 4517 9.177608 CTGTTGACCAATTTGATTAGAATCCTA 57.822 33.333 0.00 0.00 34.50 2.94
4123 4521 8.408043 TGTCTGTTGACCAATTTGATTAGAAT 57.592 30.769 0.00 0.00 42.28 2.40
4145 4543 9.015577 TGTTGAGAAAAATTTATTGACGTTGTC 57.984 29.630 0.00 0.00 0.00 3.18
4157 4555 4.851558 GTCGCGCTATGTTGAGAAAAATTT 59.148 37.500 5.56 0.00 0.00 1.82
4158 4556 4.083537 TGTCGCGCTATGTTGAGAAAAATT 60.084 37.500 5.56 0.00 0.00 1.82
4159 4557 3.435327 TGTCGCGCTATGTTGAGAAAAAT 59.565 39.130 5.56 0.00 0.00 1.82
4164 4563 0.802222 GCTGTCGCGCTATGTTGAGA 60.802 55.000 5.56 0.00 0.00 3.27
4225 4624 6.128172 CCCTTGCTATGTCAAGTAAAAGTGAG 60.128 42.308 7.65 0.00 41.29 3.51
4337 4736 2.131972 CGACATCAGTTTCGGAACACA 58.868 47.619 9.76 0.00 38.26 3.72
4338 4737 2.132762 ACGACATCAGTTTCGGAACAC 58.867 47.619 9.76 0.00 39.63 3.32
4343 4742 3.061322 TGGTTTACGACATCAGTTTCGG 58.939 45.455 0.00 0.00 39.63 4.30
4364 4763 6.458751 GCAGGTTCACACATGATTTCGATAAT 60.459 38.462 0.00 0.00 36.79 1.28
4422 4821 0.611200 CCATGGGTACACACTTCGGA 59.389 55.000 0.00 0.00 0.00 4.55
4431 4831 9.126151 CATACATAACAATAAACCATGGGTACA 57.874 33.333 18.09 0.78 33.12 2.90
4435 4835 8.463930 AGACATACATAACAATAAACCATGGG 57.536 34.615 18.09 0.00 0.00 4.00
4458 4858 7.112122 ACATCATGGCTAAACATTAACAGAGA 58.888 34.615 0.00 0.00 0.00 3.10
4459 4859 7.325660 ACATCATGGCTAAACATTAACAGAG 57.674 36.000 0.00 0.00 0.00 3.35
4575 4978 1.494721 AGAACTCTGGTTTGCCTTGGA 59.505 47.619 0.00 0.00 35.58 3.53
4586 4989 5.243981 ACATGTCAAGATGAAGAACTCTGG 58.756 41.667 0.00 0.00 0.00 3.86
4594 4997 9.282247 GTAGCATTTTTACATGTCAAGATGAAG 57.718 33.333 21.31 2.44 0.00 3.02
4657 5060 6.092944 ACAATTCCAGTATTTCACGCGATTAA 59.907 34.615 15.93 3.23 0.00 1.40
4687 5090 9.942850 TGAAGTATGACATAAGAGAAAACATCA 57.057 29.630 0.00 0.00 0.00 3.07
4707 5110 4.751098 GTGGTCCAACGTAAATGTGAAGTA 59.249 41.667 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.