Multiple sequence alignment - TraesCS6B01G319100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G319100 chr6B 100.000 2498 0 0 1 2498 567118187 567115690 0.000000e+00 4614.0
1 TraesCS6B01G319100 chr6B 91.028 2218 179 10 1 2214 223247732 223249933 0.000000e+00 2976.0
2 TraesCS6B01G319100 chr6B 93.131 2009 131 7 1 2005 147950687 147948682 0.000000e+00 2939.0
3 TraesCS6B01G319100 chr6B 84.699 183 28 0 2154 2336 567116277 567116095 1.530000e-42 183.0
4 TraesCS6B01G319100 chr7B 90.167 2522 219 17 1 2498 636041722 636039206 0.000000e+00 3256.0
5 TraesCS6B01G319100 chr7B 93.359 1807 108 7 1 1804 36428066 36426269 0.000000e+00 2662.0
6 TraesCS6B01G319100 chr7B 86.441 472 56 6 2031 2498 316357470 316357003 6.160000e-141 510.0
7 TraesCS6B01G319100 chr7B 85.684 468 65 1 1747 2214 316357632 316357167 2.230000e-135 492.0
8 TraesCS6B01G319100 chr7B 89.231 65 5 2 1908 1971 36425996 36425933 2.060000e-11 80.5
9 TraesCS6B01G319100 chr3D 93.054 2217 150 4 1 2214 558679303 558681518 0.000000e+00 3238.0
10 TraesCS6B01G319100 chr3D 86.837 471 56 5 2031 2498 558681212 558681679 2.850000e-144 521.0
11 TraesCS6B01G319100 chr3B 88.582 2531 216 35 1 2498 718831357 718828867 0.000000e+00 3005.0
12 TraesCS6B01G319100 chr4B 90.391 2227 195 18 1 2214 622503280 622501060 0.000000e+00 2909.0
13 TraesCS6B01G319100 chr5B 90.145 2202 189 13 1 2196 529280456 529282635 0.000000e+00 2839.0
14 TraesCS6B01G319100 chr5B 82.903 503 67 16 1725 2214 659546441 659546937 3.820000e-118 435.0
15 TraesCS6B01G319100 chr5D 91.333 2100 142 20 1 2095 387241779 387243843 0.000000e+00 2833.0
16 TraesCS6B01G319100 chr1D 91.535 1713 130 6 505 2214 491071255 491069555 0.000000e+00 2346.0
17 TraesCS6B01G319100 chr1D 86.650 397 50 3 2031 2425 491069860 491069465 1.060000e-118 436.0
18 TraesCS6B01G319100 chr7D 86.496 274 34 3 2227 2498 536967106 536967378 5.220000e-77 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G319100 chr6B 567115690 567118187 2497 True 2398.50 4614 92.3495 1 2498 2 chr6B.!!$R2 2497
1 TraesCS6B01G319100 chr6B 223247732 223249933 2201 False 2976.00 2976 91.0280 1 2214 1 chr6B.!!$F1 2213
2 TraesCS6B01G319100 chr6B 147948682 147950687 2005 True 2939.00 2939 93.1310 1 2005 1 chr6B.!!$R1 2004
3 TraesCS6B01G319100 chr7B 636039206 636041722 2516 True 3256.00 3256 90.1670 1 2498 1 chr7B.!!$R1 2497
4 TraesCS6B01G319100 chr7B 36425933 36428066 2133 True 1371.25 2662 91.2950 1 1971 2 chr7B.!!$R2 1970
5 TraesCS6B01G319100 chr7B 316357003 316357632 629 True 501.00 510 86.0625 1747 2498 2 chr7B.!!$R3 751
6 TraesCS6B01G319100 chr3D 558679303 558681679 2376 False 1879.50 3238 89.9455 1 2498 2 chr3D.!!$F1 2497
7 TraesCS6B01G319100 chr3B 718828867 718831357 2490 True 3005.00 3005 88.5820 1 2498 1 chr3B.!!$R1 2497
8 TraesCS6B01G319100 chr4B 622501060 622503280 2220 True 2909.00 2909 90.3910 1 2214 1 chr4B.!!$R1 2213
9 TraesCS6B01G319100 chr5B 529280456 529282635 2179 False 2839.00 2839 90.1450 1 2196 1 chr5B.!!$F1 2195
10 TraesCS6B01G319100 chr5D 387241779 387243843 2064 False 2833.00 2833 91.3330 1 2095 1 chr5D.!!$F1 2094
11 TraesCS6B01G319100 chr1D 491069465 491071255 1790 True 1391.00 2346 89.0925 505 2425 2 chr1D.!!$R1 1920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.032540 GAGACGGTGTGGTTTACGGT 59.967 55.0 0.0 0.0 34.8 4.83 F
1018 1027 0.107017 CATGGCTTCATCCGGTTCCT 60.107 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 1144 0.179018 GTGGACACCTTCACCTTGCT 60.179 55.0 0.00 0.00 0.0 3.91 R
1961 2105 0.260816 AGATGTAGGTCCTACCGCCA 59.739 55.0 23.68 7.86 44.9 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 9.611284 CATTAGATTCAACGACAAAGAAATGAA 57.389 29.630 0.00 0.00 0.00 2.57
195 196 0.032540 GAGACGGTGTGGTTTACGGT 59.967 55.000 0.00 0.00 34.80 4.83
237 238 1.597663 CTCAAGAACCGGTGTTGTCAC 59.402 52.381 22.87 5.40 43.19 3.67
371 372 1.066430 GGAAGCCACGAGGTTGACATA 60.066 52.381 0.00 0.00 35.97 2.29
402 403 4.458989 CGATTTCATCCTTTCCTTGACCAA 59.541 41.667 0.00 0.00 0.00 3.67
436 437 3.909364 TGAGTATGATGGCCCACATATCA 59.091 43.478 17.75 12.34 40.72 2.15
475 476 1.777878 TGGTGCCTACAAAGGGAAGAA 59.222 47.619 0.00 0.00 46.04 2.52
579 586 2.229792 GAGCCACCAGACATCAACAAA 58.770 47.619 0.00 0.00 0.00 2.83
654 661 0.179111 GGATCGATGCCAACACGAGA 60.179 55.000 0.54 0.00 39.31 4.04
657 664 0.179111 TCGATGCCAACACGAGATCC 60.179 55.000 0.00 0.00 0.00 3.36
670 677 1.207089 CGAGATCCAGCCAAACAGGTA 59.793 52.381 0.00 0.00 40.61 3.08
686 693 6.893020 AACAGGTATTCATAGAGGAGGTTT 57.107 37.500 0.00 0.00 0.00 3.27
693 700 3.256704 TCATAGAGGAGGTTTTGGTGGT 58.743 45.455 0.00 0.00 0.00 4.16
697 704 2.986728 AGAGGAGGTTTTGGTGGTACAT 59.013 45.455 0.00 0.00 44.52 2.29
712 719 3.789840 TGGTACATGAGGAGGTAGGACTA 59.210 47.826 0.00 0.00 0.00 2.59
801 808 0.747283 GACGGGCGAGTCTTAGAGGA 60.747 60.000 4.76 0.00 38.09 3.71
1018 1027 0.107017 CATGGCTTCATCCGGTTCCT 60.107 55.000 0.00 0.00 0.00 3.36
1077 1086 0.110486 ACAAGTGGGAGAACGCCAAT 59.890 50.000 0.00 0.00 0.00 3.16
1078 1087 1.247567 CAAGTGGGAGAACGCCAATT 58.752 50.000 0.00 0.00 0.00 2.32
1087 1096 1.153353 GAACGCCAATTTGGACGAGA 58.847 50.000 27.36 0.00 40.96 4.04
1135 1144 4.632327 TCATGTTGGTGTGGAGATGTTA 57.368 40.909 0.00 0.00 0.00 2.41
1171 1180 0.878523 CACCGACCGCAAGAAGTCAA 60.879 55.000 0.00 0.00 43.02 3.18
1218 1227 2.420022 GTGTCCCAACTATGCACATGAC 59.580 50.000 0.00 0.00 0.00 3.06
1255 1264 1.811860 GCCTATGACGTACCACCGT 59.188 57.895 0.00 0.00 45.18 4.83
1436 1447 0.535335 CTTAGGAGGCAACGGCTGTA 59.465 55.000 0.00 0.00 46.39 2.74
1449 1460 1.324736 CGGCTGTACGAAGAAGCATTC 59.675 52.381 4.72 0.00 40.19 2.67
1506 1517 5.412904 GGAGAAGATGGAATGAAAGAAACGT 59.587 40.000 0.00 0.00 0.00 3.99
1914 1934 3.114606 TGCAGAGATTTCATCCCTACCA 58.885 45.455 0.00 0.00 0.00 3.25
1971 2115 2.606519 AAGGCAGTGGCGGTAGGA 60.607 61.111 11.51 0.00 42.47 2.94
1975 2119 2.056223 GCAGTGGCGGTAGGACCTA 61.056 63.158 0.00 0.00 35.66 3.08
1987 2131 1.589196 GGACCTACATCTCACGCGC 60.589 63.158 5.73 0.00 0.00 6.86
1989 2133 2.655364 CCTACATCTCACGCGCCG 60.655 66.667 5.73 0.00 0.00 6.46
2019 2163 3.596214 ACATTGTCTAATGGGACGTGAC 58.404 45.455 0.00 0.00 46.33 3.67
2027 2171 1.553690 ATGGGACGTGACAGGAAGGG 61.554 60.000 0.00 0.00 0.00 3.95
2040 2184 1.749033 GAAGGGATCCTACCGCCAG 59.251 63.158 12.58 0.00 31.13 4.85
2059 2203 3.078836 GCCTGTGGCGGTAGGGTA 61.079 66.667 4.07 0.00 39.62 3.69
2065 2209 1.306312 TGGCGGTAGGGTATGGTGT 60.306 57.895 0.00 0.00 0.00 4.16
2102 2246 3.866582 GCGGTAGGCCCTGCATCT 61.867 66.667 7.85 0.00 34.28 2.90
2103 2247 2.423446 CGGTAGGCCCTGCATCTC 59.577 66.667 0.00 0.00 0.00 2.75
2104 2248 2.434843 CGGTAGGCCCTGCATCTCA 61.435 63.158 0.00 0.00 0.00 3.27
2105 2249 1.762522 CGGTAGGCCCTGCATCTCAT 61.763 60.000 0.00 0.00 0.00 2.90
2106 2250 0.250640 GGTAGGCCCTGCATCTCATG 60.251 60.000 0.00 0.00 0.00 3.07
2125 2269 2.746277 GCCGAGCGGGACAATTGT 60.746 61.111 11.78 11.78 38.47 2.71
2126 2270 2.750888 GCCGAGCGGGACAATTGTC 61.751 63.158 27.16 27.16 44.04 3.18
2127 2271 1.079127 CCGAGCGGGACAATTGTCT 60.079 57.895 31.81 16.63 44.20 3.41
2128 2272 1.361668 CCGAGCGGGACAATTGTCTG 61.362 60.000 31.81 25.51 44.20 3.51
2129 2273 0.389817 CGAGCGGGACAATTGTCTGA 60.390 55.000 31.81 0.00 44.20 3.27
2130 2274 1.740380 CGAGCGGGACAATTGTCTGAT 60.740 52.381 31.81 24.48 44.20 2.90
2131 2275 1.667724 GAGCGGGACAATTGTCTGATG 59.332 52.381 31.81 21.15 44.20 3.07
2132 2276 0.734889 GCGGGACAATTGTCTGATGG 59.265 55.000 31.81 19.28 44.20 3.51
2133 2277 1.382522 CGGGACAATTGTCTGATGGG 58.617 55.000 31.81 14.69 44.20 4.00
2134 2278 1.767759 GGGACAATTGTCTGATGGGG 58.232 55.000 31.81 0.00 44.20 4.96
2135 2279 1.106285 GGACAATTGTCTGATGGGGC 58.894 55.000 31.81 13.52 44.20 5.80
2136 2280 0.734889 GACAATTGTCTGATGGGGCG 59.265 55.000 27.66 0.00 41.65 6.13
2137 2281 1.315257 ACAATTGTCTGATGGGGCGC 61.315 55.000 4.92 0.00 0.00 6.53
2138 2282 2.114670 AATTGTCTGATGGGGCGCG 61.115 57.895 0.00 0.00 0.00 6.86
2139 2283 2.535485 AATTGTCTGATGGGGCGCGA 62.535 55.000 12.10 0.00 0.00 5.87
2140 2284 3.950794 TTGTCTGATGGGGCGCGAC 62.951 63.158 12.10 6.99 0.00 5.19
2141 2285 4.451150 GTCTGATGGGGCGCGACA 62.451 66.667 17.00 7.80 0.00 4.35
2142 2286 3.700970 TCTGATGGGGCGCGACAA 61.701 61.111 17.00 0.00 0.00 3.18
2143 2287 3.197790 CTGATGGGGCGCGACAAG 61.198 66.667 17.00 0.00 0.00 3.16
2144 2288 3.664025 CTGATGGGGCGCGACAAGA 62.664 63.158 17.00 0.00 0.00 3.02
2145 2289 2.435938 GATGGGGCGCGACAAGAA 60.436 61.111 17.00 0.00 0.00 2.52
2146 2290 2.436646 ATGGGGCGCGACAAGAAG 60.437 61.111 17.00 0.00 0.00 2.85
2147 2291 3.976701 ATGGGGCGCGACAAGAAGG 62.977 63.158 17.00 0.00 0.00 3.46
2149 2293 4.388499 GGGCGCGACAAGAAGGGA 62.388 66.667 17.00 0.00 0.00 4.20
2150 2294 2.125106 GGCGCGACAAGAAGGGAT 60.125 61.111 12.10 0.00 0.00 3.85
2151 2295 2.174319 GGCGCGACAAGAAGGGATC 61.174 63.158 12.10 0.00 0.00 3.36
2152 2296 1.447838 GCGCGACAAGAAGGGATCA 60.448 57.895 12.10 0.00 0.00 2.92
2153 2297 0.811616 GCGCGACAAGAAGGGATCAT 60.812 55.000 12.10 0.00 0.00 2.45
2154 2298 1.538204 GCGCGACAAGAAGGGATCATA 60.538 52.381 12.10 0.00 0.00 2.15
2155 2299 2.128035 CGCGACAAGAAGGGATCATAC 58.872 52.381 0.00 0.00 0.00 2.39
2156 2300 2.484889 GCGACAAGAAGGGATCATACC 58.515 52.381 0.00 0.00 0.00 2.73
2157 2301 2.103263 GCGACAAGAAGGGATCATACCT 59.897 50.000 0.00 0.00 40.96 3.08
2158 2302 3.800604 GCGACAAGAAGGGATCATACCTC 60.801 52.174 0.00 0.00 37.35 3.85
2159 2303 3.243907 CGACAAGAAGGGATCATACCTCC 60.244 52.174 0.00 0.00 37.35 4.30
2160 2304 3.711704 GACAAGAAGGGATCATACCTCCA 59.288 47.826 0.00 0.00 37.35 3.86
2161 2305 3.713764 ACAAGAAGGGATCATACCTCCAG 59.286 47.826 0.00 0.00 37.35 3.86
2162 2306 3.969976 CAAGAAGGGATCATACCTCCAGA 59.030 47.826 0.00 0.00 37.35 3.86
2163 2307 3.855668 AGAAGGGATCATACCTCCAGAG 58.144 50.000 0.00 0.00 37.35 3.35
2164 2308 2.022718 AGGGATCATACCTCCAGAGC 57.977 55.000 0.00 0.00 31.01 4.09
2165 2309 0.980423 GGGATCATACCTCCAGAGCC 59.020 60.000 0.00 0.00 37.12 4.70
2166 2310 1.484065 GGGATCATACCTCCAGAGCCT 60.484 57.143 0.00 0.00 37.92 4.58
2167 2311 2.225394 GGGATCATACCTCCAGAGCCTA 60.225 54.545 0.00 0.00 37.92 3.93
2168 2312 3.567663 GGGATCATACCTCCAGAGCCTAT 60.568 52.174 0.00 0.00 37.92 2.57
2169 2313 3.450457 GGATCATACCTCCAGAGCCTATG 59.550 52.174 0.00 0.00 35.08 2.23
2170 2314 2.894731 TCATACCTCCAGAGCCTATGG 58.105 52.381 0.00 0.00 39.33 2.74
2181 2325 2.058675 GCCTATGGCGGTAGGATGT 58.941 57.895 17.14 0.00 43.27 3.06
2182 2326 0.320771 GCCTATGGCGGTAGGATGTG 60.321 60.000 17.14 0.00 43.27 3.21
2183 2327 0.321671 CCTATGGCGGTAGGATGTGG 59.678 60.000 9.50 0.00 43.27 4.17
2184 2328 1.048601 CTATGGCGGTAGGATGTGGT 58.951 55.000 0.00 0.00 0.00 4.16
2185 2329 0.756294 TATGGCGGTAGGATGTGGTG 59.244 55.000 0.00 0.00 0.00 4.17
2186 2330 1.271840 ATGGCGGTAGGATGTGGTGT 61.272 55.000 0.00 0.00 0.00 4.16
2187 2331 1.153429 GGCGGTAGGATGTGGTGTC 60.153 63.158 0.00 0.00 0.00 3.67
2188 2332 1.153429 GCGGTAGGATGTGGTGTCC 60.153 63.158 0.00 0.00 35.94 4.02
2190 2334 1.771565 CGGTAGGATGTGGTGTCCTA 58.228 55.000 0.00 0.00 44.17 2.94
2199 2343 3.834799 GGTGTCCTACCGCCGGAG 61.835 72.222 11.71 0.00 40.26 4.63
2200 2344 4.509737 GTGTCCTACCGCCGGAGC 62.510 72.222 11.71 0.00 0.00 4.70
2272 2684 4.388499 GGCGCGACAGGAAGGGAA 62.388 66.667 12.10 0.00 0.00 3.97
2313 2725 1.989586 TGGTAGGTTGTGGTTGCCTAT 59.010 47.619 0.00 0.00 37.24 2.57
2393 2934 9.638239 GTTAGAGATGGCAAATGAAAAACAATA 57.362 29.630 0.00 0.00 0.00 1.90
2485 3027 7.494625 CCGGTACTAGTTCAAATGACACATATT 59.505 37.037 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 0.830444 TGGCTCGTCCACTTGGTAGT 60.830 55.000 0.00 0.00 40.72 2.73
188 189 1.799403 CATACGCAACACCACCGTAAA 59.201 47.619 0.00 0.00 40.31 2.01
195 196 0.953471 GCACCTCATACGCAACACCA 60.953 55.000 0.00 0.00 0.00 4.17
231 232 0.681733 GAGGCCTCTCACAGTGACAA 59.318 55.000 26.25 0.00 39.74 3.18
371 372 1.227674 GGATGAAATCGAGGCGCCT 60.228 57.895 33.48 33.48 46.86 5.52
402 403 2.470990 TCATACTCAGGCCACTGTGAT 58.529 47.619 9.86 0.00 45.14 3.06
436 437 1.064906 CATGAGTTCAGGGTCAGGCAT 60.065 52.381 0.00 0.00 0.00 4.40
475 476 6.555360 TCACTCCTAAACCTCTTCTTTCTTCT 59.445 38.462 0.00 0.00 0.00 2.85
567 574 5.302568 ACATTGTCCACATTTGTTGATGTCT 59.697 36.000 0.00 0.00 38.15 3.41
579 586 2.632377 GGATCGTCACATTGTCCACAT 58.368 47.619 0.00 0.00 0.00 3.21
638 645 0.179111 GGATCTCGTGTTGGCATCGA 60.179 55.000 8.95 8.95 0.00 3.59
654 661 3.737559 TGAATACCTGTTTGGCTGGAT 57.262 42.857 0.00 0.00 40.22 3.41
657 664 4.818546 CCTCTATGAATACCTGTTTGGCTG 59.181 45.833 0.00 0.00 40.22 4.85
670 677 4.292306 ACCACCAAAACCTCCTCTATGAAT 59.708 41.667 0.00 0.00 0.00 2.57
686 693 2.038863 ACCTCCTCATGTACCACCAA 57.961 50.000 0.00 0.00 0.00 3.67
693 700 4.141228 CCACTAGTCCTACCTCCTCATGTA 60.141 50.000 0.00 0.00 0.00 2.29
697 704 1.063867 GCCACTAGTCCTACCTCCTCA 60.064 57.143 0.00 0.00 0.00 3.86
1077 1086 5.373222 TCTTTTTCCTTCATCTCGTCCAAA 58.627 37.500 0.00 0.00 0.00 3.28
1078 1087 4.968259 TCTTTTTCCTTCATCTCGTCCAA 58.032 39.130 0.00 0.00 0.00 3.53
1087 1096 7.457535 TGGGGTTTTCATATCTTTTTCCTTCAT 59.542 33.333 0.00 0.00 0.00 2.57
1135 1144 0.179018 GTGGACACCTTCACCTTGCT 60.179 55.000 0.00 0.00 0.00 3.91
1171 1180 2.255770 AATCTTCTCCCTTCCGTCCT 57.744 50.000 0.00 0.00 0.00 3.85
1218 1227 3.291383 TTTGTTGGAAGCGCCCGG 61.291 61.111 2.29 0.00 34.97 5.73
1436 1447 3.077359 CCTCTTTGGAATGCTTCTTCGT 58.923 45.455 0.00 0.00 38.35 3.85
1452 1463 1.406614 CGCTCTTCATCCAAGCCTCTT 60.407 52.381 0.00 0.00 32.31 2.85
1506 1517 2.203832 TGTGCCCTCTCCTGCTCA 60.204 61.111 0.00 0.00 0.00 4.26
1961 2105 0.260816 AGATGTAGGTCCTACCGCCA 59.739 55.000 23.68 7.86 44.90 5.69
1962 2106 0.960286 GAGATGTAGGTCCTACCGCC 59.040 60.000 23.68 13.54 44.90 6.13
1971 2115 2.494918 GGCGCGTGAGATGTAGGT 59.505 61.111 8.43 0.00 0.00 3.08
1987 2131 2.460330 GACAATGTGTCTGGCTCGG 58.540 57.895 0.00 0.00 43.73 4.63
2000 2144 3.369471 CCTGTCACGTCCCATTAGACAAT 60.369 47.826 4.48 0.00 38.58 2.71
2007 2151 0.324943 CCTTCCTGTCACGTCCCATT 59.675 55.000 0.00 0.00 0.00 3.16
2008 2152 1.553690 CCCTTCCTGTCACGTCCCAT 61.554 60.000 0.00 0.00 0.00 4.00
2013 2157 2.287829 GGATCCCTTCCTGTCACGT 58.712 57.895 0.00 0.00 41.78 4.49
2027 2171 1.834822 AGGCTCTGGCGGTAGGATC 60.835 63.158 0.00 0.00 39.81 3.36
2065 2209 2.363795 CTGCCTCCGGTGGTAGGA 60.364 66.667 27.40 8.67 36.39 2.94
2075 2219 4.162690 CCTACCGCCACTGCCTCC 62.163 72.222 0.00 0.00 0.00 4.30
2076 2220 4.840005 GCCTACCGCCACTGCCTC 62.840 72.222 0.00 0.00 0.00 4.70
2086 2230 1.762522 ATGAGATGCAGGGCCTACCG 61.763 60.000 5.28 0.00 46.96 4.02
2088 2232 3.319135 CATGAGATGCAGGGCCTAC 57.681 57.895 5.28 0.00 0.00 3.18
2108 2252 2.746277 ACAATTGTCCCGCTCGGC 60.746 61.111 4.92 0.00 0.00 5.54
2109 2253 1.079127 AGACAATTGTCCCGCTCGG 60.079 57.895 30.34 0.48 45.85 4.63
2110 2254 0.389817 TCAGACAATTGTCCCGCTCG 60.390 55.000 30.34 14.71 45.85 5.03
2111 2255 1.667724 CATCAGACAATTGTCCCGCTC 59.332 52.381 30.34 9.52 45.85 5.03
2112 2256 1.679944 CCATCAGACAATTGTCCCGCT 60.680 52.381 30.34 14.07 45.85 5.52
2113 2257 0.734889 CCATCAGACAATTGTCCCGC 59.265 55.000 30.34 10.60 45.85 6.13
2114 2258 1.382522 CCCATCAGACAATTGTCCCG 58.617 55.000 30.34 22.78 45.85 5.14
2115 2259 1.767759 CCCCATCAGACAATTGTCCC 58.232 55.000 30.34 11.66 45.85 4.46
2116 2260 1.106285 GCCCCATCAGACAATTGTCC 58.894 55.000 30.34 15.50 45.85 4.02
2117 2261 0.734889 CGCCCCATCAGACAATTGTC 59.265 55.000 27.69 27.69 45.08 3.18
2118 2262 1.315257 GCGCCCCATCAGACAATTGT 61.315 55.000 11.78 11.78 0.00 2.71
2119 2263 1.434696 GCGCCCCATCAGACAATTG 59.565 57.895 3.24 3.24 0.00 2.32
2120 2264 2.114670 CGCGCCCCATCAGACAATT 61.115 57.895 0.00 0.00 0.00 2.32
2121 2265 2.514592 CGCGCCCCATCAGACAAT 60.515 61.111 0.00 0.00 0.00 2.71
2122 2266 3.700970 TCGCGCCCCATCAGACAA 61.701 61.111 0.00 0.00 0.00 3.18
2123 2267 4.451150 GTCGCGCCCCATCAGACA 62.451 66.667 0.00 0.00 32.57 3.41
2124 2268 3.950794 TTGTCGCGCCCCATCAGAC 62.951 63.158 0.00 1.59 0.00 3.51
2125 2269 3.664025 CTTGTCGCGCCCCATCAGA 62.664 63.158 0.00 0.00 0.00 3.27
2126 2270 3.197790 CTTGTCGCGCCCCATCAG 61.198 66.667 0.00 0.00 0.00 2.90
2127 2271 3.247056 TTCTTGTCGCGCCCCATCA 62.247 57.895 0.00 0.00 0.00 3.07
2128 2272 2.435938 TTCTTGTCGCGCCCCATC 60.436 61.111 0.00 0.00 0.00 3.51
2129 2273 2.436646 CTTCTTGTCGCGCCCCAT 60.437 61.111 0.00 0.00 0.00 4.00
2130 2274 4.697756 CCTTCTTGTCGCGCCCCA 62.698 66.667 0.00 0.00 0.00 4.96
2132 2276 3.682292 ATCCCTTCTTGTCGCGCCC 62.682 63.158 0.00 0.00 0.00 6.13
2133 2277 2.125106 ATCCCTTCTTGTCGCGCC 60.125 61.111 0.00 0.00 0.00 6.53
2134 2278 0.811616 ATGATCCCTTCTTGTCGCGC 60.812 55.000 0.00 0.00 0.00 6.86
2135 2279 2.128035 GTATGATCCCTTCTTGTCGCG 58.872 52.381 0.00 0.00 0.00 5.87
2136 2280 2.103263 AGGTATGATCCCTTCTTGTCGC 59.897 50.000 0.00 0.00 0.00 5.19
2137 2281 3.243907 GGAGGTATGATCCCTTCTTGTCG 60.244 52.174 0.00 0.00 30.60 4.35
2138 2282 3.711704 TGGAGGTATGATCCCTTCTTGTC 59.288 47.826 0.00 0.00 35.86 3.18
2139 2283 3.713764 CTGGAGGTATGATCCCTTCTTGT 59.286 47.826 0.00 0.00 35.86 3.16
2140 2284 3.969976 TCTGGAGGTATGATCCCTTCTTG 59.030 47.826 0.00 0.00 35.86 3.02
2141 2285 4.230455 CTCTGGAGGTATGATCCCTTCTT 58.770 47.826 0.00 0.00 35.86 2.52
2142 2286 3.855668 CTCTGGAGGTATGATCCCTTCT 58.144 50.000 0.00 0.00 35.86 2.85
2143 2287 2.301583 GCTCTGGAGGTATGATCCCTTC 59.698 54.545 0.00 0.00 35.86 3.46
2144 2288 2.334023 GCTCTGGAGGTATGATCCCTT 58.666 52.381 0.00 0.00 35.86 3.95
2145 2289 1.484065 GGCTCTGGAGGTATGATCCCT 60.484 57.143 0.00 0.00 35.86 4.20
2146 2290 0.980423 GGCTCTGGAGGTATGATCCC 59.020 60.000 0.00 0.00 35.86 3.85
2147 2291 2.022718 AGGCTCTGGAGGTATGATCC 57.977 55.000 0.00 0.00 37.35 3.36
2148 2292 3.450457 CCATAGGCTCTGGAGGTATGATC 59.550 52.174 13.38 0.00 35.70 2.92
2149 2293 3.448934 CCATAGGCTCTGGAGGTATGAT 58.551 50.000 13.38 0.00 35.70 2.45
2150 2294 2.894731 CCATAGGCTCTGGAGGTATGA 58.105 52.381 13.38 0.00 35.70 2.15
2151 2295 1.277557 GCCATAGGCTCTGGAGGTATG 59.722 57.143 21.97 2.97 46.69 2.39
2152 2296 1.650528 GCCATAGGCTCTGGAGGTAT 58.349 55.000 21.97 0.00 46.69 2.73
2153 2297 3.149436 GCCATAGGCTCTGGAGGTA 57.851 57.895 21.97 0.00 46.69 3.08
2154 2298 3.978164 GCCATAGGCTCTGGAGGT 58.022 61.111 21.97 0.00 46.69 3.85
2163 2307 0.320771 CACATCCTACCGCCATAGGC 60.321 60.000 0.00 0.00 46.75 3.93
2164 2308 0.321671 CCACATCCTACCGCCATAGG 59.678 60.000 2.04 2.04 42.91 2.57
2165 2309 1.048601 ACCACATCCTACCGCCATAG 58.951 55.000 0.00 0.00 0.00 2.23
2166 2310 0.756294 CACCACATCCTACCGCCATA 59.244 55.000 0.00 0.00 0.00 2.74
2167 2311 1.271840 ACACCACATCCTACCGCCAT 61.272 55.000 0.00 0.00 0.00 4.40
2168 2312 1.895020 GACACCACATCCTACCGCCA 61.895 60.000 0.00 0.00 0.00 5.69
2169 2313 1.153429 GACACCACATCCTACCGCC 60.153 63.158 0.00 0.00 0.00 6.13
2170 2314 1.153429 GGACACCACATCCTACCGC 60.153 63.158 0.00 0.00 33.03 5.68
2171 2315 1.771565 TAGGACACCACATCCTACCG 58.228 55.000 0.00 0.00 45.18 4.02
2182 2326 3.834799 CTCCGGCGGTAGGACACC 61.835 72.222 27.32 0.00 44.75 4.16
2183 2327 4.509737 GCTCCGGCGGTAGGACAC 62.510 72.222 27.32 4.87 33.58 3.67
2188 2332 4.514577 CACAGGCTCCGGCGGTAG 62.515 72.222 27.32 21.51 39.81 3.18
2199 2343 4.468689 GGTCCTACCGCCACAGGC 62.469 72.222 0.00 0.00 46.75 4.85
2200 2344 2.683933 AGGTCCTACCGCCACAGG 60.684 66.667 0.00 0.00 44.90 4.00
2201 2345 2.579201 CAGGTCCTACCGCCACAG 59.421 66.667 0.00 0.00 44.90 3.66
2202 2346 3.702048 GCAGGTCCTACCGCCACA 61.702 66.667 0.00 0.00 44.90 4.17
2243 2522 4.473520 CGCGCCCCCTCAGACAAT 62.474 66.667 0.00 0.00 0.00 2.71
2290 2702 1.272212 GGCAACCACAACCTACCATTG 59.728 52.381 0.00 0.00 0.00 2.82
2291 2703 1.146982 AGGCAACCACAACCTACCATT 59.853 47.619 0.00 0.00 37.17 3.16
2292 2704 0.777446 AGGCAACCACAACCTACCAT 59.223 50.000 0.00 0.00 37.17 3.55
2437 2978 6.405286 CCGGGTGTTGCATCTCATTTATTTTA 60.405 38.462 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.