Multiple sequence alignment - TraesCS6B01G318900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G318900 chr6B 100.000 3629 0 0 1 3629 566543826 566540198 0.000000e+00 6702.0
1 TraesCS6B01G318900 chr6B 99.227 388 2 1 3242 3629 153303235 153303621 0.000000e+00 699.0
2 TraesCS6B01G318900 chr6B 98.611 360 4 1 3270 3629 442427551 442427193 1.420000e-178 636.0
3 TraesCS6B01G318900 chr6B 82.632 190 32 1 78 266 488770598 488770787 2.240000e-37 167.0
4 TraesCS6B01G318900 chr6A 89.430 2157 111 37 733 2820 520877297 520875189 0.000000e+00 2612.0
5 TraesCS6B01G318900 chr6A 95.718 397 7 6 3242 3629 75913787 75914182 6.610000e-177 630.0
6 TraesCS6B01G318900 chr6A 88.710 310 31 4 459 766 520877747 520877440 3.420000e-100 375.0
7 TraesCS6B01G318900 chr6A 88.442 199 12 8 3056 3243 520874581 520874383 2.820000e-56 230.0
8 TraesCS6B01G318900 chr6A 89.444 180 14 2 2820 2994 520874890 520874711 4.720000e-54 222.0
9 TraesCS6B01G318900 chr6A 94.928 138 4 2 325 460 592530552 592530416 2.840000e-51 213.0
10 TraesCS6B01G318900 chr6A 94.928 138 4 2 324 459 600873916 600874052 2.840000e-51 213.0
11 TraesCS6B01G318900 chr6D 89.437 1155 80 17 1713 2834 379717768 379718913 0.000000e+00 1419.0
12 TraesCS6B01G318900 chr6D 87.791 688 23 15 764 1444 379716920 379717553 0.000000e+00 749.0
13 TraesCS6B01G318900 chr6D 86.834 319 35 4 13 329 379716182 379716495 2.070000e-92 350.0
14 TraesCS6B01G318900 chr6D 96.377 138 2 2 325 460 44091386 44091522 1.310000e-54 224.0
15 TraesCS6B01G318900 chr6D 92.683 123 5 2 3120 3238 379719566 379719688 1.340000e-39 174.0
16 TraesCS6B01G318900 chr6D 100.000 28 0 0 736 763 379716792 379716819 7.000000e-03 52.8
17 TraesCS6B01G318900 chr4B 99.229 389 2 1 3241 3629 237054310 237054697 0.000000e+00 701.0
18 TraesCS6B01G318900 chr4B 94.928 138 4 2 325 460 450466806 450466670 2.840000e-51 213.0
19 TraesCS6B01G318900 chr4B 81.068 206 36 3 60 263 448562280 448562484 1.040000e-35 161.0
20 TraesCS6B01G318900 chr3A 98.715 389 4 1 3241 3629 156304854 156305241 0.000000e+00 689.0
21 TraesCS6B01G318900 chr2B 97.733 397 8 1 3233 3629 316100576 316100971 0.000000e+00 682.0
22 TraesCS6B01G318900 chr2B 97.037 135 3 1 326 460 382088946 382088813 3.650000e-55 226.0
23 TraesCS6B01G318900 chr2B 95.620 137 4 2 325 460 657854999 657855134 6.100000e-53 219.0
24 TraesCS6B01G318900 chr2B 83.854 192 29 2 77 266 62008204 62008395 8.000000e-42 182.0
25 TraesCS6B01G318900 chr4A 95.782 403 10 2 3233 3629 295136221 295136622 0.000000e+00 643.0
26 TraesCS6B01G318900 chr4A 91.457 398 14 15 3241 3629 631388846 631388460 2.480000e-146 529.0
27 TraesCS6B01G318900 chr1A 90.932 397 21 13 3242 3629 205527438 205527048 1.490000e-143 520.0
28 TraesCS6B01G318900 chr1A 80.861 209 36 4 60 266 144861233 144861027 1.040000e-35 161.0
29 TraesCS6B01G318900 chr7B 95.620 137 5 1 324 460 680220772 680220637 6.100000e-53 219.0
30 TraesCS6B01G318900 chr1B 95.620 137 4 2 325 460 669710612 669710747 6.100000e-53 219.0
31 TraesCS6B01G318900 chr1B 94.928 138 4 2 325 460 15377487 15377351 2.840000e-51 213.0
32 TraesCS6B01G318900 chr1B 82.090 134 22 2 135 266 562901482 562901615 2.960000e-21 113.0
33 TraesCS6B01G318900 chr3B 83.491 212 32 2 58 266 567503703 567503914 1.030000e-45 195.0
34 TraesCS6B01G318900 chr3B 81.283 187 34 1 81 266 699690177 699689991 2.260000e-32 150.0
35 TraesCS6B01G318900 chr7A 82.540 189 29 4 81 266 523270717 523270530 2.900000e-36 163.0
36 TraesCS6B01G318900 chr7A 81.250 192 34 2 77 266 526511237 526511428 1.740000e-33 154.0
37 TraesCS6B01G318900 chr5D 88.235 68 8 0 199 266 229352581 229352514 8.350000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G318900 chr6B 566540198 566543826 3628 True 6702.00 6702 100.0000 1 3629 1 chr6B.!!$R2 3628
1 TraesCS6B01G318900 chr6A 520874383 520877747 3364 True 859.75 2612 89.0065 459 3243 4 chr6A.!!$R2 2784
2 TraesCS6B01G318900 chr6D 379716182 379719688 3506 False 548.96 1419 91.3490 13 3238 5 chr6D.!!$F2 3225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 630 0.162294 CGACCGGTTTTACTTCGCAC 59.838 55.0 9.42 0.0 0.00 5.34 F
1356 1625 0.308993 GTGTGCAGAAGACACCTTGC 59.691 55.0 0.00 0.0 38.22 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 2306 0.692476 AAGCCATACACCAGCACTCA 59.308 50.0 0.0 0.00 0.00 3.41 R
3349 4471 0.025256 GAGACTAGTCGCGTGAGTCG 59.975 60.0 22.5 6.69 43.57 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.335647 CCAGCCCAAGCACGACCT 62.336 66.667 0.00 0.00 43.56 3.85
43 44 5.394883 CCAAGCACGACCTAGTAAATAAGGA 60.395 44.000 0.00 0.00 36.66 3.36
44 45 5.259832 AGCACGACCTAGTAAATAAGGAC 57.740 43.478 0.00 0.00 36.66 3.85
50 51 6.891908 ACGACCTAGTAAATAAGGACCTGTTA 59.108 38.462 0.00 0.00 36.66 2.41
51 52 7.397192 ACGACCTAGTAAATAAGGACCTGTTAA 59.603 37.037 0.00 0.00 36.66 2.01
88 89 9.671279 ATCTTTGTCATATATTGTCACACTTGA 57.329 29.630 0.00 0.00 0.00 3.02
136 137 3.716601 CCACACTTTGGCTTGTTTTAGG 58.283 45.455 0.00 0.00 39.07 2.69
144 145 6.780522 ACTTTGGCTTGTTTTAGGGAATCTTA 59.219 34.615 0.00 0.00 0.00 2.10
145 146 7.454694 ACTTTGGCTTGTTTTAGGGAATCTTAT 59.545 33.333 0.00 0.00 0.00 1.73
153 154 8.934023 TGTTTTAGGGAATCTTATCACACTTT 57.066 30.769 0.00 0.00 0.00 2.66
154 155 9.362151 TGTTTTAGGGAATCTTATCACACTTTT 57.638 29.630 0.00 0.00 0.00 2.27
160 161 8.360390 AGGGAATCTTATCACACTTTTTGTTTC 58.640 33.333 0.00 0.00 35.67 2.78
172 173 7.167968 CACACTTTTTGTTTCTATGACATGTGG 59.832 37.037 1.15 0.00 35.67 4.17
223 226 2.949644 AGTTGTGGCTAGAACCAAACAC 59.050 45.455 6.47 0.00 42.70 3.32
227 230 2.884639 GTGGCTAGAACCAAACACACAT 59.115 45.455 0.00 0.00 42.70 3.21
232 235 5.122396 GGCTAGAACCAAACACACATCTAAG 59.878 44.000 0.00 0.00 0.00 2.18
266 269 3.832527 ACCTAAGTTGAAGTGTGGCAAT 58.167 40.909 0.00 0.00 0.00 3.56
267 270 4.215109 ACCTAAGTTGAAGTGTGGCAATT 58.785 39.130 0.00 0.00 0.00 2.32
272 275 1.674359 TGAAGTGTGGCAATTCGTGT 58.326 45.000 0.00 0.00 40.66 4.49
277 280 3.649096 TGGCAATTCGTGTCACGG 58.351 55.556 24.33 9.99 42.81 4.94
306 309 8.590204 CCAAACAACCCCTAAATATTACACTTT 58.410 33.333 0.00 0.00 0.00 2.66
353 356 4.393778 GGTCACCGGGGGAGAGGA 62.394 72.222 2.42 0.00 0.00 3.71
355 358 1.689582 GTCACCGGGGGAGAGGATT 60.690 63.158 2.42 0.00 0.00 3.01
356 359 1.082206 TCACCGGGGGAGAGGATTT 59.918 57.895 2.42 0.00 0.00 2.17
357 360 0.981277 TCACCGGGGGAGAGGATTTC 60.981 60.000 2.42 0.00 0.00 2.17
358 361 1.693103 ACCGGGGGAGAGGATTTCC 60.693 63.158 6.32 0.00 0.00 3.13
359 362 1.692749 CCGGGGGAGAGGATTTCCA 60.693 63.158 0.00 0.00 38.89 3.53
363 366 0.548510 GGGGAGAGGATTTCCACCTG 59.451 60.000 0.00 0.00 37.93 4.00
365 368 1.916181 GGGAGAGGATTTCCACCTGAA 59.084 52.381 0.00 0.00 37.93 3.02
368 371 4.352298 GGGAGAGGATTTCCACCTGAATAT 59.648 45.833 0.00 0.00 37.93 1.28
369 372 5.548056 GGGAGAGGATTTCCACCTGAATATA 59.452 44.000 0.00 0.00 37.93 0.86
370 373 6.216456 GGGAGAGGATTTCCACCTGAATATAT 59.784 42.308 0.00 0.00 37.93 0.86
371 374 7.257199 GGGAGAGGATTTCCACCTGAATATATT 60.257 40.741 0.00 0.00 37.93 1.28
372 375 7.609532 GGAGAGGATTTCCACCTGAATATATTG 59.390 40.741 1.78 0.00 37.93 1.90
375 378 6.944862 AGGATTTCCACCTGAATATATTGCTC 59.055 38.462 1.78 0.00 38.89 4.26
377 380 7.231317 GGATTTCCACCTGAATATATTGCTCAA 59.769 37.037 1.78 0.00 35.64 3.02
378 381 7.953005 TTTCCACCTGAATATATTGCTCAAA 57.047 32.000 1.78 0.00 31.67 2.69
400 403 3.025924 CTGCCAAAGCCAAGAGTCA 57.974 52.632 0.00 0.00 38.69 3.41
401 404 0.595095 CTGCCAAAGCCAAGAGTCAC 59.405 55.000 0.00 0.00 38.69 3.67
402 405 0.823356 TGCCAAAGCCAAGAGTCACC 60.823 55.000 0.00 0.00 38.69 4.02
403 406 1.527433 GCCAAAGCCAAGAGTCACCC 61.527 60.000 0.00 0.00 0.00 4.61
404 407 0.895559 CCAAAGCCAAGAGTCACCCC 60.896 60.000 0.00 0.00 0.00 4.95
405 408 0.895559 CAAAGCCAAGAGTCACCCCC 60.896 60.000 0.00 0.00 0.00 5.40
406 409 1.068352 AAAGCCAAGAGTCACCCCCT 61.068 55.000 0.00 0.00 0.00 4.79
407 410 1.068352 AAGCCAAGAGTCACCCCCTT 61.068 55.000 0.00 0.00 0.00 3.95
408 411 0.178873 AGCCAAGAGTCACCCCCTTA 60.179 55.000 0.00 0.00 0.00 2.69
410 413 1.340114 GCCAAGAGTCACCCCCTTAAG 60.340 57.143 0.00 0.00 0.00 1.85
413 416 2.040412 CAAGAGTCACCCCCTTAAGCTT 59.960 50.000 3.48 3.48 0.00 3.74
414 417 2.349445 AGAGTCACCCCCTTAAGCTTT 58.651 47.619 3.20 0.00 0.00 3.51
415 418 2.040412 AGAGTCACCCCCTTAAGCTTTG 59.960 50.000 3.20 0.00 0.00 2.77
416 419 1.075536 AGTCACCCCCTTAAGCTTTGG 59.924 52.381 3.20 7.77 0.00 3.28
417 420 0.251608 TCACCCCCTTAAGCTTTGGC 60.252 55.000 3.20 0.00 39.06 4.52
435 438 4.437682 TGGCTGATCCAGTTTATAAGGG 57.562 45.455 0.00 0.00 40.72 3.95
436 439 4.044308 TGGCTGATCCAGTTTATAAGGGA 58.956 43.478 5.41 5.41 40.72 4.20
437 440 4.476846 TGGCTGATCCAGTTTATAAGGGAA 59.523 41.667 6.67 0.00 40.72 3.97
438 441 5.044476 TGGCTGATCCAGTTTATAAGGGAAA 60.044 40.000 6.67 0.31 40.72 3.13
439 442 5.299531 GGCTGATCCAGTTTATAAGGGAAAC 59.700 44.000 6.67 0.00 37.11 2.78
440 443 5.299531 GCTGATCCAGTTTATAAGGGAAACC 59.700 44.000 6.67 0.00 41.99 3.27
441 444 7.894744 GCTGATCCAGTTTATAAGGGAAACCG 61.895 46.154 6.67 3.76 44.70 4.44
452 455 2.736144 GGGAAACCGGATCAAAAACC 57.264 50.000 9.46 0.00 43.64 3.27
453 456 2.244695 GGGAAACCGGATCAAAAACCT 58.755 47.619 9.46 0.00 43.64 3.50
454 457 3.423749 GGGAAACCGGATCAAAAACCTA 58.576 45.455 9.46 0.00 43.64 3.08
455 458 3.827876 GGGAAACCGGATCAAAAACCTAA 59.172 43.478 9.46 0.00 43.64 2.69
456 459 4.281435 GGGAAACCGGATCAAAAACCTAAA 59.719 41.667 9.46 0.00 43.64 1.85
457 460 5.224888 GGAAACCGGATCAAAAACCTAAAC 58.775 41.667 9.46 0.00 0.00 2.01
467 470 6.793505 TCAAAAACCTAAACAAAAGCCCTA 57.206 33.333 0.00 0.00 0.00 3.53
468 471 7.368198 TCAAAAACCTAAACAAAAGCCCTAT 57.632 32.000 0.00 0.00 0.00 2.57
526 565 9.191995 CAAGTTTCCCTAATAATCAAAACACAC 57.808 33.333 0.00 0.00 0.00 3.82
527 566 8.472007 AGTTTCCCTAATAATCAAAACACACA 57.528 30.769 0.00 0.00 0.00 3.72
553 592 7.620888 ACTTATGAAGATTTTGGATCCAACCAT 59.379 33.333 27.04 20.50 39.82 3.55
557 596 2.021262 TTTTGGATCCAACCATGCCA 57.979 45.000 27.04 7.71 39.82 4.92
570 609 0.680921 CATGCCAACCCGATCCAAGT 60.681 55.000 0.00 0.00 0.00 3.16
577 616 1.065273 CCCGATCCAAGTACGACCG 59.935 63.158 0.00 0.00 0.00 4.79
586 625 3.069443 TCCAAGTACGACCGGTTTTACTT 59.931 43.478 25.35 25.35 35.59 2.24
591 630 0.162294 CGACCGGTTTTACTTCGCAC 59.838 55.000 9.42 0.00 0.00 5.34
597 636 2.134346 GGTTTTACTTCGCACCGTGTA 58.866 47.619 0.00 0.00 0.00 2.90
610 649 1.289109 CCGTGTAGTGCTTTGGACCG 61.289 60.000 0.00 0.00 0.00 4.79
656 696 7.709613 GCTCGATCCAAGTCCTAAGTTTAATAA 59.290 37.037 0.00 0.00 0.00 1.40
683 723 6.721318 AGAAGGGAATGCTATGTTGAGTTAA 58.279 36.000 0.00 0.00 0.00 2.01
695 735 2.890945 GTTGAGTTAACAGGTGCCCAAT 59.109 45.455 8.61 0.00 39.16 3.16
708 749 5.186797 CAGGTGCCCAATAAACAAATAAGGA 59.813 40.000 0.00 0.00 0.00 3.36
926 1187 4.857509 GCTCAACGATCCCTAGATTACT 57.142 45.455 0.00 0.00 30.90 2.24
927 1188 5.203060 GCTCAACGATCCCTAGATTACTT 57.797 43.478 0.00 0.00 30.90 2.24
928 1189 5.224135 GCTCAACGATCCCTAGATTACTTC 58.776 45.833 0.00 0.00 30.90 3.01
929 1190 5.434352 TCAACGATCCCTAGATTACTTCG 57.566 43.478 0.00 0.00 30.90 3.79
930 1191 3.919223 ACGATCCCTAGATTACTTCGC 57.081 47.619 0.00 0.00 30.90 4.70
931 1192 2.557490 ACGATCCCTAGATTACTTCGCC 59.443 50.000 0.00 0.00 30.90 5.54
932 1193 2.820787 CGATCCCTAGATTACTTCGCCT 59.179 50.000 0.00 0.00 30.90 5.52
977 1239 4.863925 GCGGACAGCGAGAGGAGC 62.864 72.222 0.00 0.00 35.41 4.70
978 1240 4.200283 CGGACAGCGAGAGGAGCC 62.200 72.222 0.00 0.00 34.64 4.70
979 1241 3.844090 GGACAGCGAGAGGAGCCC 61.844 72.222 0.00 0.00 34.64 5.19
980 1242 3.844090 GACAGCGAGAGGAGCCCC 61.844 72.222 0.00 0.00 34.64 5.80
996 1258 4.271816 CCGCCGGTCGATCCAGAG 62.272 72.222 17.96 0.00 41.67 3.35
1112 1374 0.750182 GACTCCTCCGTCTCCCTCAG 60.750 65.000 0.00 0.00 0.00 3.35
1139 1401 4.752879 GCTCCCGCCGCAGTGTAA 62.753 66.667 0.00 0.00 0.00 2.41
1140 1402 2.813908 CTCCCGCCGCAGTGTAAC 60.814 66.667 0.00 0.00 0.00 2.50
1141 1403 3.583276 CTCCCGCCGCAGTGTAACA 62.583 63.158 0.00 0.00 41.43 2.41
1142 1404 2.435938 CCCGCCGCAGTGTAACAT 60.436 61.111 0.00 0.00 41.43 2.71
1152 1414 4.931601 CCGCAGTGTAACATATATGCTCAT 59.068 41.667 12.79 0.00 41.43 2.90
1188 1450 4.738124 TCGTCTGTTTCATCTGATCTGAC 58.262 43.478 4.21 0.00 0.00 3.51
1190 1452 4.187694 GTCTGTTTCATCTGATCTGACCC 58.812 47.826 4.21 0.00 0.00 4.46
1198 1467 1.925959 TCTGATCTGACCCCTCTCTCA 59.074 52.381 0.00 0.00 0.00 3.27
1209 1478 0.602562 CCTCTCTCATCGGATGGAGC 59.397 60.000 21.71 0.00 31.68 4.70
1216 1485 3.245668 ATCGGATGGAGCGGGATGC 62.246 63.158 0.00 0.00 46.98 3.91
1356 1625 0.308993 GTGTGCAGAAGACACCTTGC 59.691 55.000 0.00 0.00 38.22 4.01
1413 1682 7.121315 GCAAGTGGGAATTCAGATAGTAAAACT 59.879 37.037 7.93 0.00 0.00 2.66
1428 1700 4.821805 AGTAAAACTCACCATTGTGTCTGG 59.178 41.667 0.00 0.00 43.26 3.86
1434 1706 4.263639 ACTCACCATTGTGTCTGGATCATT 60.264 41.667 0.00 0.00 43.26 2.57
1472 1744 0.331616 GGTGTTAGCCAGGGGATTGT 59.668 55.000 0.00 0.00 0.00 2.71
1481 1753 4.463788 GGGGATTGTGGCCTGGGG 62.464 72.222 3.32 0.00 0.00 4.96
1485 1757 1.694856 GATTGTGGCCTGGGGGTAA 59.305 57.895 3.32 0.00 34.45 2.85
1494 1766 2.023788 GCCTGGGGGTAACATGATGTG 61.024 57.143 0.00 0.00 39.74 3.21
1554 1834 2.866156 CTGTTACATACATCAGGCACGG 59.134 50.000 0.00 0.00 35.85 4.94
1580 1868 4.078537 ACATTTTGCTATGCCACTGTGTA 58.921 39.130 7.08 0.00 0.00 2.90
1607 1895 6.441093 CTGTTGTTACATACATCAGGCATT 57.559 37.500 7.69 0.00 45.01 3.56
1633 1921 5.560724 TGCTTTTAGGAAGATTGCACTACT 58.439 37.500 0.00 0.00 0.00 2.57
1685 1973 9.224267 CTGGAACCTGTAAATGGATATCATAAG 57.776 37.037 4.83 0.00 34.44 1.73
1889 2181 5.059404 CCATGTTTGGATTTGTACCTGTC 57.941 43.478 0.00 0.00 46.92 3.51
1901 2193 0.817654 TACCTGTCGATGGCTGTCTG 59.182 55.000 7.25 0.00 0.00 3.51
1925 2217 9.250624 CTGCCTTATACTGTTCTGATAGTTAAC 57.749 37.037 0.00 0.00 0.00 2.01
1972 2288 7.288810 TGATTGGAAATGTTTACTTCTGCTT 57.711 32.000 0.00 0.00 0.00 3.91
1990 2306 5.048846 TGCTTTCCCTCTGTTTTAGTCTT 57.951 39.130 0.00 0.00 0.00 3.01
1999 2315 4.380531 TCTGTTTTAGTCTTGAGTGCTGG 58.619 43.478 0.00 0.00 0.00 4.85
2000 2316 4.130118 CTGTTTTAGTCTTGAGTGCTGGT 58.870 43.478 0.00 0.00 0.00 4.00
2001 2317 3.876914 TGTTTTAGTCTTGAGTGCTGGTG 59.123 43.478 0.00 0.00 0.00 4.17
2008 2324 0.692476 TTGAGTGCTGGTGTATGGCT 59.308 50.000 0.00 0.00 0.00 4.75
2056 2372 2.216046 ACATATCGTCAAGCTGCCATG 58.784 47.619 0.00 0.00 0.00 3.66
2175 2491 2.874701 ACATCTGCATCGTATTCCTTGC 59.125 45.455 0.00 0.00 35.67 4.01
2251 2567 4.072131 CACGCTTGCCTTTATATGGGTAT 58.928 43.478 0.00 0.00 0.00 2.73
2304 2624 7.241042 ACAACTATTCTCTGTTTGCTAGGTA 57.759 36.000 0.00 0.00 0.00 3.08
2481 2801 0.522180 TGAACTCTCGGAAGCGAGAC 59.478 55.000 0.00 0.00 45.48 3.36
2504 2824 1.737363 CGAGAAGCACTACTCCCTTGC 60.737 57.143 0.00 0.00 36.45 4.01
2538 2858 1.340991 GCCCCTGGCTTTGAGTATGAA 60.341 52.381 0.00 0.00 46.69 2.57
2571 2891 4.151121 TGGCCTCTTTTGATGATGTGAAA 58.849 39.130 3.32 0.00 0.00 2.69
2604 2924 1.376649 AGGCAGAACCCTTCCTCAAT 58.623 50.000 0.00 0.00 40.58 2.57
2630 2950 7.569599 ACCTTATTCCTTCCAAGAAGTAAGA 57.430 36.000 11.73 0.00 0.00 2.10
2632 2952 7.883833 ACCTTATTCCTTCCAAGAAGTAAGAAC 59.116 37.037 11.73 0.00 0.00 3.01
2642 2962 6.378564 TCCAAGAAGTAAGAACGATCAGAGAT 59.621 38.462 0.00 0.00 0.00 2.75
2658 2978 5.187687 TCAGAGATGTTCATATTGCTTGCA 58.812 37.500 0.00 0.00 0.00 4.08
2659 2979 5.296035 TCAGAGATGTTCATATTGCTTGCAG 59.704 40.000 0.00 0.00 0.00 4.41
2681 3005 5.292834 CAGGCAGTCTATTATGGCATTATCG 59.707 44.000 4.78 0.00 43.96 2.92
2722 3046 4.459390 TGGATGCCATTTTCTGTGATTG 57.541 40.909 0.00 0.00 0.00 2.67
2805 3131 7.363443 GGTGCCTGGTTGTAACATTTTATGTAT 60.363 37.037 0.00 0.00 44.07 2.29
2808 3134 7.700656 GCCTGGTTGTAACATTTTATGTATCAC 59.299 37.037 0.00 0.00 44.07 3.06
2853 3513 5.182001 AGCTTGCTTGTGTAGTTATCCTTTG 59.818 40.000 0.00 0.00 0.00 2.77
2864 3524 7.225931 GTGTAGTTATCCTTTGTCAAACACTCA 59.774 37.037 0.00 0.00 32.75 3.41
2870 3530 3.374058 CCTTTGTCAAACACTCACTCGTT 59.626 43.478 0.00 0.00 0.00 3.85
2884 3544 2.029486 CACTCGTTTCGTCGTCCAAAAA 59.971 45.455 0.00 0.00 0.00 1.94
2894 3554 4.083431 TCGTCGTCCAAAAAGTTTGTTTCA 60.083 37.500 0.00 0.00 0.00 2.69
2911 3571 4.745125 TGTTTCATTCAGTTCGACTCAGTC 59.255 41.667 0.00 0.00 0.00 3.51
2936 3598 3.704566 AGACTTTTTGGACCCTTTCAACC 59.295 43.478 0.00 0.00 0.00 3.77
2951 3613 5.184864 CCTTTCAACCTGTATACATGCCAAA 59.815 40.000 5.91 3.46 0.00 3.28
2953 3615 6.849085 TTCAACCTGTATACATGCCAAATT 57.151 33.333 5.91 0.00 0.00 1.82
2994 3659 4.321230 GCGGTTGAAGTTCCTTGATGAATT 60.321 41.667 0.00 0.00 0.00 2.17
2995 3660 5.106317 GCGGTTGAAGTTCCTTGATGAATTA 60.106 40.000 0.00 0.00 0.00 1.40
3001 3767 8.827832 TGAAGTTCCTTGATGAATTATCCATT 57.172 30.769 0.00 0.00 34.77 3.16
3043 4066 6.857083 TCTGGGATTTGAAATATTCCCCTA 57.143 37.500 11.49 0.00 46.16 3.53
3054 4077 7.338710 TGAAATATTCCCCTACTGTCTGAAAG 58.661 38.462 0.00 0.00 0.00 2.62
3069 4092 5.163663 TGTCTGAAAGTGGTTGTCATTGAAC 60.164 40.000 0.00 0.00 33.76 3.18
3073 4096 6.734137 TGAAAGTGGTTGTCATTGAACATAC 58.266 36.000 0.00 0.00 0.00 2.39
3076 4099 6.899393 AGTGGTTGTCATTGAACATACAAT 57.101 33.333 0.00 0.00 40.50 2.71
3077 4100 7.288810 AGTGGTTGTCATTGAACATACAATT 57.711 32.000 0.00 0.00 38.25 2.32
3078 4101 8.402798 AGTGGTTGTCATTGAACATACAATTA 57.597 30.769 0.00 0.00 38.25 1.40
3079 4102 8.514594 AGTGGTTGTCATTGAACATACAATTAG 58.485 33.333 0.00 0.00 38.25 1.73
3081 4104 8.855110 TGGTTGTCATTGAACATACAATTAGTT 58.145 29.630 0.00 0.00 38.25 2.24
3082 4105 9.691362 GGTTGTCATTGAACATACAATTAGTTT 57.309 29.630 0.00 0.00 38.25 2.66
3115 4234 3.284617 CTTGATGGTGGCTTGATGATGA 58.715 45.455 0.00 0.00 0.00 2.92
3197 4319 2.031157 ACAACTGAATAAACGCTGCCAC 60.031 45.455 0.00 0.00 0.00 5.01
3230 4352 7.384932 CCAAACCCTATTTCTTAAGCAAGTTTG 59.615 37.037 16.42 16.42 39.80 2.93
3242 4364 9.742144 TCTTAAGCAAGTTTGTTATTATACCCA 57.258 29.630 0.00 0.00 33.20 4.51
3245 4367 7.346751 AGCAAGTTTGTTATTATACCCATGG 57.653 36.000 4.14 4.14 0.00 3.66
3246 4368 7.122715 AGCAAGTTTGTTATTATACCCATGGA 58.877 34.615 15.22 0.00 0.00 3.41
3247 4369 7.784550 AGCAAGTTTGTTATTATACCCATGGAT 59.215 33.333 15.22 0.00 0.00 3.41
3248 4370 8.421002 GCAAGTTTGTTATTATACCCATGGATT 58.579 33.333 15.22 1.59 0.00 3.01
3251 4373 8.846211 AGTTTGTTATTATACCCATGGATTTCG 58.154 33.333 15.22 0.00 0.00 3.46
3252 4374 8.842280 GTTTGTTATTATACCCATGGATTTCGA 58.158 33.333 15.22 0.00 0.00 3.71
3253 4375 8.615878 TTGTTATTATACCCATGGATTTCGAG 57.384 34.615 15.22 0.00 0.00 4.04
3254 4376 7.741785 TGTTATTATACCCATGGATTTCGAGT 58.258 34.615 15.22 2.72 0.00 4.18
3255 4377 7.876068 TGTTATTATACCCATGGATTTCGAGTC 59.124 37.037 15.22 0.00 0.00 3.36
3256 4378 2.882927 TACCCATGGATTTCGAGTCG 57.117 50.000 15.22 6.09 0.00 4.18
3257 4379 0.462047 ACCCATGGATTTCGAGTCGC 60.462 55.000 15.22 0.00 0.00 5.19
3258 4380 0.179073 CCCATGGATTTCGAGTCGCT 60.179 55.000 15.22 0.00 0.00 4.93
3259 4381 1.212616 CCATGGATTTCGAGTCGCTC 58.787 55.000 5.56 4.43 0.00 5.03
3305 4427 2.254350 CGACGAGTCGCAGTTCCA 59.746 61.111 13.59 0.00 46.50 3.53
3306 4428 1.797933 CGACGAGTCGCAGTTCCAG 60.798 63.158 13.59 0.00 46.50 3.86
3307 4429 1.444553 GACGAGTCGCAGTTCCAGG 60.445 63.158 13.59 0.00 0.00 4.45
3308 4430 2.125912 CGAGTCGCAGTTCCAGGG 60.126 66.667 0.00 0.00 0.00 4.45
3309 4431 2.435059 GAGTCGCAGTTCCAGGGC 60.435 66.667 0.00 0.00 0.00 5.19
3310 4432 3.959991 GAGTCGCAGTTCCAGGGCC 62.960 68.421 0.00 0.00 0.00 5.80
3314 4436 4.021925 GCAGTTCCAGGGCCGACT 62.022 66.667 0.00 0.00 0.00 4.18
3315 4437 2.266055 CAGTTCCAGGGCCGACTC 59.734 66.667 0.00 0.00 0.00 3.36
3316 4438 2.203788 AGTTCCAGGGCCGACTCA 60.204 61.111 0.00 0.00 0.00 3.41
3317 4439 2.266055 GTTCCAGGGCCGACTCAG 59.734 66.667 0.00 0.00 0.00 3.35
3318 4440 3.706373 TTCCAGGGCCGACTCAGC 61.706 66.667 0.00 0.00 0.00 4.26
3325 4447 3.134792 GCCGACTCAGCCTCTCGA 61.135 66.667 0.00 0.00 0.00 4.04
3326 4448 2.795297 CCGACTCAGCCTCTCGAC 59.205 66.667 0.00 0.00 0.00 4.20
3327 4449 1.747367 CCGACTCAGCCTCTCGACT 60.747 63.158 0.00 0.00 0.00 4.18
3328 4450 1.711060 CCGACTCAGCCTCTCGACTC 61.711 65.000 0.00 0.00 0.00 3.36
3329 4451 1.719117 GACTCAGCCTCTCGACTCG 59.281 63.158 0.00 0.00 0.00 4.18
3330 4452 0.741574 GACTCAGCCTCTCGACTCGA 60.742 60.000 0.29 0.29 0.00 4.04
3331 4453 1.022451 ACTCAGCCTCTCGACTCGAC 61.022 60.000 0.00 0.00 0.00 4.20
3332 4454 0.742990 CTCAGCCTCTCGACTCGACT 60.743 60.000 0.00 0.00 0.00 4.18
3333 4455 0.741574 TCAGCCTCTCGACTCGACTC 60.742 60.000 0.00 0.00 0.00 3.36
3334 4456 1.450669 AGCCTCTCGACTCGACTCC 60.451 63.158 0.00 0.00 0.00 3.85
3335 4457 1.450669 GCCTCTCGACTCGACTCCT 60.451 63.158 0.00 0.00 0.00 3.69
3336 4458 1.711060 GCCTCTCGACTCGACTCCTG 61.711 65.000 0.00 0.00 0.00 3.86
3337 4459 1.092921 CCTCTCGACTCGACTCCTGG 61.093 65.000 0.00 0.00 0.00 4.45
3338 4460 1.078356 TCTCGACTCGACTCCTGGG 60.078 63.158 0.00 0.00 0.00 4.45
3339 4461 1.078356 CTCGACTCGACTCCTGGGA 60.078 63.158 0.00 0.00 0.00 4.37
3340 4462 0.464735 CTCGACTCGACTCCTGGGAT 60.465 60.000 0.00 0.00 0.00 3.85
3341 4463 0.748367 TCGACTCGACTCCTGGGATG 60.748 60.000 0.00 0.00 0.00 3.51
3342 4464 0.748367 CGACTCGACTCCTGGGATGA 60.748 60.000 0.00 0.00 0.00 2.92
3343 4465 1.028905 GACTCGACTCCTGGGATGAG 58.971 60.000 0.00 10.22 35.92 2.90
3344 4466 0.333312 ACTCGACTCCTGGGATGAGT 59.667 55.000 11.14 11.14 45.47 3.41
3347 4469 3.192799 GACTCCTGGGATGAGTCGA 57.807 57.895 4.82 0.00 46.49 4.20
3348 4470 1.028905 GACTCCTGGGATGAGTCGAG 58.971 60.000 4.82 0.00 46.49 4.04
3349 4471 1.040339 ACTCCTGGGATGAGTCGAGC 61.040 60.000 0.00 0.00 38.71 5.03
3350 4472 2.069465 CTCCTGGGATGAGTCGAGCG 62.069 65.000 0.00 0.00 0.00 5.03
3351 4473 2.121538 CCTGGGATGAGTCGAGCGA 61.122 63.158 0.00 0.00 0.00 4.93
3352 4474 1.064946 CTGGGATGAGTCGAGCGAC 59.935 63.158 14.65 14.65 44.86 5.19
3366 4488 4.647491 CGACTCACGCGACTAGTC 57.353 61.111 15.93 19.93 36.99 2.59
3367 4489 2.079874 CGACTCACGCGACTAGTCT 58.920 57.895 25.62 0.00 37.97 3.24
3368 4490 0.025256 CGACTCACGCGACTAGTCTC 59.975 60.000 25.62 11.98 37.97 3.36
3369 4491 0.025256 GACTCACGCGACTAGTCTCG 59.975 60.000 28.55 28.55 42.77 4.04
3370 4492 0.389556 ACTCACGCGACTAGTCTCGA 60.390 55.000 34.71 17.08 39.89 4.04
3371 4493 0.025256 CTCACGCGACTAGTCTCGAC 59.975 60.000 34.71 15.02 39.89 4.20
3372 4494 0.389556 TCACGCGACTAGTCTCGACT 60.390 55.000 34.71 15.89 39.89 4.18
3373 4495 1.135286 TCACGCGACTAGTCTCGACTA 60.135 52.381 34.71 19.32 39.89 2.59
3382 4504 2.747396 AGTCTCGACTAGTCACGACT 57.253 50.000 26.36 26.36 45.02 4.18
3383 4505 3.865011 AGTCTCGACTAGTCACGACTA 57.135 47.619 28.79 6.73 42.54 2.59
3396 4518 3.921081 CGACTAGTCGCGGTTTTTG 57.079 52.632 30.44 3.36 46.50 2.44
3397 4519 0.437295 CGACTAGTCGCGGTTTTTGG 59.563 55.000 30.44 2.61 46.50 3.28
3398 4520 0.794473 GACTAGTCGCGGTTTTTGGG 59.206 55.000 7.22 0.00 0.00 4.12
3399 4521 0.107268 ACTAGTCGCGGTTTTTGGGT 59.893 50.000 6.13 0.00 0.00 4.51
3400 4522 0.794473 CTAGTCGCGGTTTTTGGGTC 59.206 55.000 6.13 0.00 0.00 4.46
3401 4523 0.945265 TAGTCGCGGTTTTTGGGTCG 60.945 55.000 6.13 0.00 0.00 4.79
3402 4524 2.108566 TCGCGGTTTTTGGGTCGA 59.891 55.556 6.13 0.00 0.00 4.20
3403 4525 1.523258 TCGCGGTTTTTGGGTCGAA 60.523 52.632 6.13 0.00 0.00 3.71
3404 4526 1.369568 CGCGGTTTTTGGGTCGAAC 60.370 57.895 0.00 0.00 0.00 3.95
3405 4527 1.369568 GCGGTTTTTGGGTCGAACG 60.370 57.895 0.00 0.00 0.00 3.95
3406 4528 1.774046 GCGGTTTTTGGGTCGAACGA 61.774 55.000 0.00 0.00 0.00 3.85
3407 4529 0.041926 CGGTTTTTGGGTCGAACGAC 60.042 55.000 17.33 17.33 43.87 4.34
3408 4530 1.302366 GGTTTTTGGGTCGAACGACT 58.698 50.000 22.98 0.00 44.04 4.18
3409 4531 1.262417 GGTTTTTGGGTCGAACGACTC 59.738 52.381 22.98 20.86 45.35 3.36
3418 4540 2.876645 GAACGACTCGAGGCAGCG 60.877 66.667 20.47 16.93 0.00 5.18
3424 4546 4.218578 CTCGAGGCAGCGCTGGAT 62.219 66.667 36.47 11.40 0.00 3.41
3425 4547 4.212913 TCGAGGCAGCGCTGGATC 62.213 66.667 36.47 20.99 0.00 3.36
3426 4548 4.218578 CGAGGCAGCGCTGGATCT 62.219 66.667 36.47 17.96 0.00 2.75
3427 4549 2.588314 GAGGCAGCGCTGGATCTG 60.588 66.667 36.47 13.73 0.00 2.90
3428 4550 4.172512 AGGCAGCGCTGGATCTGG 62.173 66.667 36.47 12.02 0.00 3.86
3429 4551 4.166888 GGCAGCGCTGGATCTGGA 62.167 66.667 36.47 0.00 0.00 3.86
3430 4552 2.588314 GCAGCGCTGGATCTGGAG 60.588 66.667 36.47 10.44 0.00 3.86
3431 4553 2.588314 CAGCGCTGGATCTGGAGC 60.588 66.667 29.88 0.00 0.00 4.70
3432 4554 3.079478 AGCGCTGGATCTGGAGCA 61.079 61.111 10.39 0.00 34.69 4.26
3433 4555 2.894387 GCGCTGGATCTGGAGCAC 60.894 66.667 0.00 0.25 34.69 4.40
3434 4556 2.898738 CGCTGGATCTGGAGCACT 59.101 61.111 10.99 0.00 34.69 4.40
3435 4557 1.227205 CGCTGGATCTGGAGCACTC 60.227 63.158 10.99 0.00 34.69 3.51
3436 4558 1.674764 CGCTGGATCTGGAGCACTCT 61.675 60.000 10.99 0.00 34.69 3.24
3437 4559 0.104671 GCTGGATCTGGAGCACTCTC 59.895 60.000 6.95 0.00 38.62 3.20
3466 4588 4.406173 CTGCTGCTGCTGCTGTGC 62.406 66.667 27.67 18.47 39.81 4.57
3467 4589 4.949098 TGCTGCTGCTGCTGTGCT 62.949 61.111 27.67 0.00 39.81 4.40
3468 4590 4.406173 GCTGCTGCTGCTGTGCTG 62.406 66.667 22.10 10.72 39.81 4.41
3519 4641 2.871099 CTGCTGCTGCTGCTGAAG 59.129 61.111 27.67 19.04 40.01 3.02
3536 4658 2.046892 GCTGAAGCGGCAAGAGGA 60.047 61.111 1.45 0.00 35.55 3.71
3537 4659 2.105466 GCTGAAGCGGCAAGAGGAG 61.105 63.158 1.45 0.00 35.55 3.69
3538 4660 2.046892 TGAAGCGGCAAGAGGAGC 60.047 61.111 1.45 0.00 0.00 4.70
3539 4661 2.046892 GAAGCGGCAAGAGGAGCA 60.047 61.111 1.45 0.00 0.00 4.26
3540 4662 2.046507 AAGCGGCAAGAGGAGCAG 60.047 61.111 1.45 0.00 0.00 4.24
3541 4663 3.618780 AAGCGGCAAGAGGAGCAGG 62.619 63.158 1.45 0.00 0.00 4.85
3543 4665 4.093291 CGGCAAGAGGAGCAGGCT 62.093 66.667 0.00 0.00 0.00 4.58
3544 4666 2.438075 GGCAAGAGGAGCAGGCTG 60.438 66.667 10.94 10.94 0.00 4.85
3545 4667 2.438075 GCAAGAGGAGCAGGCTGG 60.438 66.667 17.64 0.00 0.00 4.85
3546 4668 2.271497 CAAGAGGAGCAGGCTGGG 59.729 66.667 17.64 0.00 0.00 4.45
3547 4669 2.123632 AAGAGGAGCAGGCTGGGA 59.876 61.111 17.64 0.00 0.00 4.37
3548 4670 1.994507 AAGAGGAGCAGGCTGGGAG 60.995 63.158 17.64 0.00 0.00 4.30
3549 4671 3.478274 GAGGAGCAGGCTGGGAGG 61.478 72.222 17.64 0.00 0.00 4.30
3550 4672 3.991924 GAGGAGCAGGCTGGGAGGA 62.992 68.421 17.64 0.00 0.00 3.71
3551 4673 3.478274 GGAGCAGGCTGGGAGGAG 61.478 72.222 17.64 0.00 0.00 3.69
3552 4674 3.478274 GAGCAGGCTGGGAGGAGG 61.478 72.222 17.64 0.00 0.00 4.30
3553 4675 3.991924 GAGCAGGCTGGGAGGAGGA 62.992 68.421 17.64 0.00 0.00 3.71
3554 4676 3.478274 GCAGGCTGGGAGGAGGAG 61.478 72.222 17.64 0.00 0.00 3.69
3555 4677 3.478274 CAGGCTGGGAGGAGGAGC 61.478 72.222 6.61 0.00 0.00 4.70
3559 4681 3.465403 CTGGGAGGAGGAGCGGTG 61.465 72.222 0.00 0.00 0.00 4.94
3563 4685 3.706373 GAGGAGGAGCGGTGGCAA 61.706 66.667 0.00 0.00 43.41 4.52
3564 4686 3.672295 GAGGAGGAGCGGTGGCAAG 62.672 68.421 0.00 0.00 43.41 4.01
3565 4687 3.706373 GGAGGAGCGGTGGCAAGA 61.706 66.667 0.00 0.00 43.41 3.02
3566 4688 2.125350 GAGGAGCGGTGGCAAGAG 60.125 66.667 0.00 0.00 43.41 2.85
3567 4689 2.604686 AGGAGCGGTGGCAAGAGA 60.605 61.111 0.00 0.00 43.41 3.10
3568 4690 2.125350 GGAGCGGTGGCAAGAGAG 60.125 66.667 0.00 0.00 43.41 3.20
3569 4691 2.817396 GAGCGGTGGCAAGAGAGC 60.817 66.667 0.00 0.00 43.41 4.09
3570 4692 3.308014 GAGCGGTGGCAAGAGAGCT 62.308 63.158 0.00 0.00 43.41 4.09
3571 4693 3.123620 GCGGTGGCAAGAGAGCTG 61.124 66.667 0.00 0.00 39.62 4.24
3572 4694 3.123620 CGGTGGCAAGAGAGCTGC 61.124 66.667 0.00 0.00 34.17 5.25
3573 4695 2.350514 GGTGGCAAGAGAGCTGCT 59.649 61.111 0.00 0.00 34.17 4.24
3574 4696 2.039405 GGTGGCAAGAGAGCTGCTG 61.039 63.158 7.01 0.00 34.17 4.41
3575 4697 2.359602 TGGCAAGAGAGCTGCTGC 60.360 61.111 7.01 7.62 40.05 5.25
3576 4698 3.497932 GGCAAGAGAGCTGCTGCG 61.498 66.667 7.01 0.00 45.42 5.18
3577 4699 3.497932 GCAAGAGAGCTGCTGCGG 61.498 66.667 7.01 3.55 45.42 5.69
3578 4700 2.818714 CAAGAGAGCTGCTGCGGG 60.819 66.667 7.01 0.00 45.42 6.13
3579 4701 4.093291 AAGAGAGCTGCTGCGGGG 62.093 66.667 7.01 0.00 45.42 5.73
3586 4708 4.020617 CTGCTGCGGGGGAGTTGA 62.021 66.667 0.00 0.00 0.00 3.18
3587 4709 3.965539 CTGCTGCGGGGGAGTTGAG 62.966 68.421 0.00 0.00 0.00 3.02
3588 4710 3.706373 GCTGCGGGGGAGTTGAGA 61.706 66.667 0.00 0.00 0.00 3.27
3589 4711 2.581354 CTGCGGGGGAGTTGAGAG 59.419 66.667 0.00 0.00 0.00 3.20
3590 4712 1.984570 CTGCGGGGGAGTTGAGAGA 60.985 63.158 0.00 0.00 0.00 3.10
3591 4713 1.306141 TGCGGGGGAGTTGAGAGAT 60.306 57.895 0.00 0.00 0.00 2.75
3592 4714 1.330655 TGCGGGGGAGTTGAGAGATC 61.331 60.000 0.00 0.00 0.00 2.75
3593 4715 2.034048 GCGGGGGAGTTGAGAGATCC 62.034 65.000 0.00 0.00 0.00 3.36
3594 4716 0.687757 CGGGGGAGTTGAGAGATCCA 60.688 60.000 0.00 0.00 34.62 3.41
3595 4717 1.813102 GGGGGAGTTGAGAGATCCAT 58.187 55.000 0.00 0.00 34.62 3.41
3596 4718 1.696884 GGGGGAGTTGAGAGATCCATC 59.303 57.143 0.00 0.00 34.62 3.51
3597 4719 1.342819 GGGGAGTTGAGAGATCCATCG 59.657 57.143 0.00 0.00 34.62 3.84
3598 4720 1.270041 GGGAGTTGAGAGATCCATCGC 60.270 57.143 0.00 0.00 34.62 4.58
3599 4721 1.686052 GGAGTTGAGAGATCCATCGCT 59.314 52.381 0.00 0.00 39.70 4.93
3600 4722 2.545532 GGAGTTGAGAGATCCATCGCTG 60.546 54.545 0.00 0.00 37.07 5.18
3601 4723 2.360483 GAGTTGAGAGATCCATCGCTGA 59.640 50.000 0.00 0.00 37.07 4.26
3602 4724 2.361757 AGTTGAGAGATCCATCGCTGAG 59.638 50.000 0.00 0.00 37.07 3.35
3603 4725 2.355010 TGAGAGATCCATCGCTGAGA 57.645 50.000 0.00 0.00 37.07 3.27
3604 4726 2.228925 TGAGAGATCCATCGCTGAGAG 58.771 52.381 0.00 0.00 37.07 3.20
3605 4727 1.541147 GAGAGATCCATCGCTGAGAGG 59.459 57.143 0.00 0.00 37.07 3.69
3606 4728 1.144708 AGAGATCCATCGCTGAGAGGA 59.855 52.381 0.00 0.00 35.58 3.71
3607 4729 1.541147 GAGATCCATCGCTGAGAGGAG 59.459 57.143 0.00 0.00 32.42 3.69
3608 4730 1.133513 AGATCCATCGCTGAGAGGAGT 60.134 52.381 0.00 0.00 32.42 3.85
3609 4731 1.000385 GATCCATCGCTGAGAGGAGTG 60.000 57.143 0.00 0.00 32.42 3.51
3610 4732 1.039785 TCCATCGCTGAGAGGAGTGG 61.040 60.000 0.00 0.00 31.12 4.00
3611 4733 1.326213 CCATCGCTGAGAGGAGTGGT 61.326 60.000 0.00 0.00 31.12 4.16
3612 4734 0.179116 CATCGCTGAGAGGAGTGGTG 60.179 60.000 0.00 0.00 31.12 4.17
3613 4735 1.326213 ATCGCTGAGAGGAGTGGTGG 61.326 60.000 0.00 0.00 0.00 4.61
3614 4736 1.979155 CGCTGAGAGGAGTGGTGGA 60.979 63.158 0.00 0.00 0.00 4.02
3615 4737 1.594310 GCTGAGAGGAGTGGTGGAC 59.406 63.158 0.00 0.00 0.00 4.02
3616 4738 0.902516 GCTGAGAGGAGTGGTGGACT 60.903 60.000 0.00 0.00 37.76 3.85
3617 4739 0.894141 CTGAGAGGAGTGGTGGACTG 59.106 60.000 0.00 0.00 33.83 3.51
3618 4740 0.542938 TGAGAGGAGTGGTGGACTGG 60.543 60.000 0.00 0.00 33.83 4.00
3619 4741 0.543174 GAGAGGAGTGGTGGACTGGT 60.543 60.000 0.00 0.00 33.83 4.00
3620 4742 0.833834 AGAGGAGTGGTGGACTGGTG 60.834 60.000 0.00 0.00 33.83 4.17
3621 4743 1.831652 GAGGAGTGGTGGACTGGTGG 61.832 65.000 0.00 0.00 33.83 4.61
3622 4744 2.032681 GAGTGGTGGACTGGTGGC 59.967 66.667 0.00 0.00 33.83 5.01
3623 4745 3.553095 GAGTGGTGGACTGGTGGCC 62.553 68.421 0.00 0.00 33.83 5.36
3624 4746 3.884774 GTGGTGGACTGGTGGCCA 61.885 66.667 0.00 0.00 0.00 5.36
3625 4747 3.099841 TGGTGGACTGGTGGCCAA 61.100 61.111 7.24 0.00 35.63 4.52
3626 4748 2.282462 GGTGGACTGGTGGCCAAG 60.282 66.667 7.24 4.52 35.63 3.61
3627 4749 2.829384 GGTGGACTGGTGGCCAAGA 61.829 63.158 7.24 0.00 35.63 3.02
3628 4750 1.302832 GTGGACTGGTGGCCAAGAG 60.303 63.158 7.24 9.14 35.63 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 6.175471 AGCATCTCAAATATGTCAAGTGTGA 58.825 36.000 0.00 0.00 0.00 3.58
101 102 6.714492 CCAAAGTGTGGTTAAAAATTTGAGC 58.286 36.000 0.00 0.00 43.20 4.26
131 132 9.362151 ACAAAAAGTGTGATAAGATTCCCTAAA 57.638 29.630 0.00 0.00 39.72 1.85
135 136 8.360390 AGAAACAAAAAGTGTGATAAGATTCCC 58.640 33.333 0.00 0.00 40.60 3.97
144 145 8.632679 ACATGTCATAGAAACAAAAAGTGTGAT 58.367 29.630 0.00 0.00 40.60 3.06
145 146 7.914871 CACATGTCATAGAAACAAAAAGTGTGA 59.085 33.333 0.00 0.00 40.60 3.58
153 154 3.509575 GCCCCACATGTCATAGAAACAAA 59.490 43.478 0.00 0.00 0.00 2.83
154 155 3.088532 GCCCCACATGTCATAGAAACAA 58.911 45.455 0.00 0.00 0.00 2.83
155 156 2.308570 AGCCCCACATGTCATAGAAACA 59.691 45.455 0.00 0.00 0.00 2.83
156 157 3.004752 AGCCCCACATGTCATAGAAAC 57.995 47.619 0.00 0.00 0.00 2.78
160 161 3.470709 CAGTAAGCCCCACATGTCATAG 58.529 50.000 0.00 0.00 0.00 2.23
197 198 5.499004 TTGGTTCTAGCCACAACTAAGAT 57.501 39.130 0.00 0.00 38.42 2.40
199 200 4.819630 TGTTTGGTTCTAGCCACAACTAAG 59.180 41.667 11.69 0.00 38.42 2.18
200 201 4.577283 GTGTTTGGTTCTAGCCACAACTAA 59.423 41.667 11.69 3.05 38.42 2.24
201 202 4.131596 GTGTTTGGTTCTAGCCACAACTA 58.868 43.478 11.69 0.00 38.42 2.24
202 203 2.949644 GTGTTTGGTTCTAGCCACAACT 59.050 45.455 11.69 0.00 38.42 3.16
203 204 2.685897 TGTGTTTGGTTCTAGCCACAAC 59.314 45.455 0.00 0.00 38.42 3.32
245 248 3.290948 TTGCCACACTTCAACTTAGGT 57.709 42.857 0.00 0.00 0.00 3.08
246 249 4.613622 CGAATTGCCACACTTCAACTTAGG 60.614 45.833 0.00 0.00 0.00 2.69
256 259 0.944386 GTGACACGAATTGCCACACT 59.056 50.000 0.00 0.00 0.00 3.55
266 269 1.008329 GTTTGGTTCCGTGACACGAA 58.992 50.000 28.83 17.23 46.05 3.85
267 270 0.108281 TGTTTGGTTCCGTGACACGA 60.108 50.000 28.83 12.31 46.05 4.35
272 275 0.752376 GGGGTTGTTTGGTTCCGTGA 60.752 55.000 0.00 0.00 0.00 4.35
275 278 1.984066 TTAGGGGTTGTTTGGTTCCG 58.016 50.000 0.00 0.00 0.00 4.30
277 280 8.030692 GTGTAATATTTAGGGGTTGTTTGGTTC 58.969 37.037 0.00 0.00 0.00 3.62
329 332 2.111460 CCCCGGTGACCGTTCAAA 59.889 61.111 23.73 0.00 46.80 2.69
330 333 3.943691 CCCCCGGTGACCGTTCAA 61.944 66.667 23.73 0.00 46.80 2.69
331 334 4.938074 TCCCCCGGTGACCGTTCA 62.938 66.667 23.73 0.33 46.80 3.18
332 335 4.078516 CTCCCCCGGTGACCGTTC 62.079 72.222 23.73 0.00 46.80 3.95
336 339 3.698263 ATCCTCTCCCCCGGTGACC 62.698 68.421 0.00 0.00 0.00 4.02
337 340 1.272554 AAATCCTCTCCCCCGGTGAC 61.273 60.000 0.00 0.00 0.00 3.67
338 341 0.981277 GAAATCCTCTCCCCCGGTGA 60.981 60.000 0.00 0.00 0.00 4.02
339 342 1.527370 GAAATCCTCTCCCCCGGTG 59.473 63.158 0.00 0.00 0.00 4.94
340 343 1.693103 GGAAATCCTCTCCCCCGGT 60.693 63.158 0.00 0.00 0.00 5.28
342 345 1.527370 GTGGAAATCCTCTCCCCCG 59.473 63.158 0.44 0.00 36.82 5.73
343 346 0.624795 AGGTGGAAATCCTCTCCCCC 60.625 60.000 0.44 0.00 36.82 5.40
344 347 0.548510 CAGGTGGAAATCCTCTCCCC 59.451 60.000 0.44 0.00 36.82 4.81
345 348 1.584724 TCAGGTGGAAATCCTCTCCC 58.415 55.000 0.44 0.00 36.82 4.30
346 349 3.941704 ATTCAGGTGGAAATCCTCTCC 57.058 47.619 0.44 1.59 39.39 3.71
347 350 7.120432 GCAATATATTCAGGTGGAAATCCTCTC 59.880 40.741 0.44 0.00 39.39 3.20
348 351 6.944862 GCAATATATTCAGGTGGAAATCCTCT 59.055 38.462 0.44 0.00 39.39 3.69
349 352 6.944862 AGCAATATATTCAGGTGGAAATCCTC 59.055 38.462 0.44 0.00 39.39 3.71
350 353 6.856757 AGCAATATATTCAGGTGGAAATCCT 58.143 36.000 0.44 0.00 39.39 3.24
351 354 6.716628 TGAGCAATATATTCAGGTGGAAATCC 59.283 38.462 0.00 0.00 39.39 3.01
352 355 7.750229 TGAGCAATATATTCAGGTGGAAATC 57.250 36.000 0.00 0.00 39.39 2.17
353 356 8.537728 TTTGAGCAATATATTCAGGTGGAAAT 57.462 30.769 0.00 0.00 39.39 2.17
355 358 7.953005 TTTTGAGCAATATATTCAGGTGGAA 57.047 32.000 0.00 0.00 40.46 3.53
356 359 7.953005 TTTTTGAGCAATATATTCAGGTGGA 57.047 32.000 0.00 0.00 0.00 4.02
382 385 0.595095 GTGACTCTTGGCTTTGGCAG 59.405 55.000 0.00 0.00 39.75 4.85
383 386 0.823356 GGTGACTCTTGGCTTTGGCA 60.823 55.000 0.00 0.00 40.87 4.92
384 387 1.527433 GGGTGACTCTTGGCTTTGGC 61.527 60.000 0.00 0.00 37.82 4.52
385 388 0.895559 GGGGTGACTCTTGGCTTTGG 60.896 60.000 0.00 0.00 0.00 3.28
386 389 0.895559 GGGGGTGACTCTTGGCTTTG 60.896 60.000 0.00 0.00 0.00 2.77
390 393 0.696501 TTAAGGGGGTGACTCTTGGC 59.303 55.000 0.00 0.00 0.00 4.52
391 394 1.340114 GCTTAAGGGGGTGACTCTTGG 60.340 57.143 4.29 0.00 0.00 3.61
394 397 2.040412 CAAAGCTTAAGGGGGTGACTCT 59.960 50.000 0.00 0.00 0.00 3.24
395 398 2.437413 CAAAGCTTAAGGGGGTGACTC 58.563 52.381 0.00 0.00 0.00 3.36
396 399 1.075536 CCAAAGCTTAAGGGGGTGACT 59.924 52.381 0.00 0.00 0.00 3.41
397 400 1.545841 CCAAAGCTTAAGGGGGTGAC 58.454 55.000 0.00 0.00 0.00 3.67
398 401 0.251608 GCCAAAGCTTAAGGGGGTGA 60.252 55.000 16.95 0.00 35.50 4.02
399 402 2.276869 GCCAAAGCTTAAGGGGGTG 58.723 57.895 16.95 2.98 35.50 4.61
400 403 4.865629 GCCAAAGCTTAAGGGGGT 57.134 55.556 16.95 0.00 35.50 4.95
414 417 4.044308 TCCCTTATAAACTGGATCAGCCA 58.956 43.478 0.00 0.00 46.96 4.75
415 418 4.706842 TCCCTTATAAACTGGATCAGCC 57.293 45.455 0.00 0.00 34.37 4.85
416 419 5.299531 GGTTTCCCTTATAAACTGGATCAGC 59.700 44.000 0.00 0.00 37.09 4.26
417 420 5.527582 CGGTTTCCCTTATAAACTGGATCAG 59.472 44.000 0.00 0.00 38.82 2.90
418 421 5.433526 CGGTTTCCCTTATAAACTGGATCA 58.566 41.667 0.00 0.00 38.82 2.92
423 426 5.433526 TGATCCGGTTTCCCTTATAAACTG 58.566 41.667 0.00 0.00 41.06 3.16
424 427 5.703730 TGATCCGGTTTCCCTTATAAACT 57.296 39.130 0.00 0.00 37.09 2.66
425 428 6.762702 TTTGATCCGGTTTCCCTTATAAAC 57.237 37.500 0.00 0.00 36.34 2.01
426 429 7.309928 GGTTTTTGATCCGGTTTCCCTTATAAA 60.310 37.037 0.00 0.00 0.00 1.40
427 430 6.153170 GGTTTTTGATCCGGTTTCCCTTATAA 59.847 38.462 0.00 0.00 0.00 0.98
428 431 5.653330 GGTTTTTGATCCGGTTTCCCTTATA 59.347 40.000 0.00 0.00 0.00 0.98
429 432 4.464951 GGTTTTTGATCCGGTTTCCCTTAT 59.535 41.667 0.00 0.00 0.00 1.73
430 433 3.827876 GGTTTTTGATCCGGTTTCCCTTA 59.172 43.478 0.00 0.00 0.00 2.69
431 434 2.631062 GGTTTTTGATCCGGTTTCCCTT 59.369 45.455 0.00 0.00 0.00 3.95
432 435 2.158370 AGGTTTTTGATCCGGTTTCCCT 60.158 45.455 0.00 0.00 0.00 4.20
433 436 2.244695 AGGTTTTTGATCCGGTTTCCC 58.755 47.619 0.00 0.00 0.00 3.97
434 437 5.221283 TGTTTAGGTTTTTGATCCGGTTTCC 60.221 40.000 0.00 0.00 0.00 3.13
435 438 5.834169 TGTTTAGGTTTTTGATCCGGTTTC 58.166 37.500 0.00 0.09 0.00 2.78
436 439 5.855740 TGTTTAGGTTTTTGATCCGGTTT 57.144 34.783 0.00 0.00 0.00 3.27
437 440 5.855740 TTGTTTAGGTTTTTGATCCGGTT 57.144 34.783 0.00 0.00 0.00 4.44
438 441 5.855740 TTTGTTTAGGTTTTTGATCCGGT 57.144 34.783 0.00 0.00 0.00 5.28
439 442 5.176774 GCTTTTGTTTAGGTTTTTGATCCGG 59.823 40.000 0.00 0.00 0.00 5.14
440 443 5.176774 GGCTTTTGTTTAGGTTTTTGATCCG 59.823 40.000 0.00 0.00 0.00 4.18
441 444 5.468746 GGGCTTTTGTTTAGGTTTTTGATCC 59.531 40.000 0.00 0.00 0.00 3.36
442 445 6.288294 AGGGCTTTTGTTTAGGTTTTTGATC 58.712 36.000 0.00 0.00 0.00 2.92
443 446 6.247229 AGGGCTTTTGTTTAGGTTTTTGAT 57.753 33.333 0.00 0.00 0.00 2.57
444 447 5.685520 AGGGCTTTTGTTTAGGTTTTTGA 57.314 34.783 0.00 0.00 0.00 2.69
445 448 8.445275 AAATAGGGCTTTTGTTTAGGTTTTTG 57.555 30.769 0.00 0.00 0.00 2.44
446 449 9.469097 AAAAATAGGGCTTTTGTTTAGGTTTTT 57.531 25.926 0.00 0.00 0.00 1.94
498 501 9.406828 GTGTTTTGATTATTAGGGAAACTTGTC 57.593 33.333 0.00 0.00 0.00 3.18
506 545 9.747898 ATAAGTGTGTGTTTTGATTATTAGGGA 57.252 29.630 0.00 0.00 0.00 4.20
507 546 9.787532 CATAAGTGTGTGTTTTGATTATTAGGG 57.212 33.333 0.00 0.00 0.00 3.53
526 565 7.093814 TGGTTGGATCCAAAATCTTCATAAGTG 60.094 37.037 28.64 0.00 37.70 3.16
527 566 6.953520 TGGTTGGATCCAAAATCTTCATAAGT 59.046 34.615 28.64 0.00 37.70 2.24
553 592 0.035820 GTACTTGGATCGGGTTGGCA 60.036 55.000 0.00 0.00 0.00 4.92
557 596 0.533951 GGTCGTACTTGGATCGGGTT 59.466 55.000 0.00 0.00 0.00 4.11
570 609 1.000827 TGCGAAGTAAAACCGGTCGTA 60.001 47.619 8.04 1.03 34.29 3.43
577 616 0.939419 ACACGGTGCGAAGTAAAACC 59.061 50.000 8.30 0.00 0.00 3.27
591 630 1.289109 CGGTCCAAAGCACTACACGG 61.289 60.000 0.00 0.00 0.00 4.94
610 649 3.534054 TTTCGGGGTGGCACGGTAC 62.534 63.158 12.17 1.64 0.00 3.34
656 696 6.904626 ACTCAACATAGCATTCCCTTCTTAT 58.095 36.000 0.00 0.00 0.00 1.73
722 763 8.025243 TCCTTAGCAAACGTTCACTAAATAAG 57.975 34.615 18.24 11.47 0.00 1.73
726 767 4.753107 CCTCCTTAGCAAACGTTCACTAAA 59.247 41.667 18.24 8.50 0.00 1.85
727 768 4.039488 TCCTCCTTAGCAAACGTTCACTAA 59.961 41.667 17.24 17.24 0.00 2.24
844 1097 4.988598 AACGTGGGAGGTGCGCTG 62.989 66.667 9.73 0.00 0.00 5.18
930 1191 2.747855 GGCTTCTGGTGGCGAAGG 60.748 66.667 0.00 0.00 38.59 3.46
931 1192 2.032528 TGGCTTCTGGTGGCGAAG 59.967 61.111 0.00 0.00 40.57 3.79
932 1193 2.032528 CTGGCTTCTGGTGGCGAA 59.967 61.111 0.00 0.00 0.00 4.70
979 1241 4.271816 CTCTGGATCGACCGGCGG 62.272 72.222 27.06 27.06 44.31 6.13
980 1242 4.271816 CCTCTGGATCGACCGGCG 62.272 72.222 0.00 6.66 44.31 6.46
981 1243 2.833582 TCCTCTGGATCGACCGGC 60.834 66.667 0.00 0.00 44.31 6.13
982 1244 0.538516 ATCTCCTCTGGATCGACCGG 60.539 60.000 0.00 0.00 45.93 5.28
983 1245 0.595588 CATCTCCTCTGGATCGACCG 59.404 60.000 0.00 0.00 42.61 4.79
984 1246 0.965439 CCATCTCCTCTGGATCGACC 59.035 60.000 0.00 0.00 35.70 4.79
985 1247 0.965439 CCCATCTCCTCTGGATCGAC 59.035 60.000 0.00 0.00 35.70 4.20
986 1248 0.829602 GCCCATCTCCTCTGGATCGA 60.830 60.000 0.00 0.00 35.70 3.59
987 1249 0.831288 AGCCCATCTCCTCTGGATCG 60.831 60.000 0.00 0.00 35.70 3.69
988 1250 0.975887 GAGCCCATCTCCTCTGGATC 59.024 60.000 0.00 0.00 35.70 3.36
989 1251 3.162394 GAGCCCATCTCCTCTGGAT 57.838 57.895 0.00 0.00 35.70 3.41
990 1252 4.716025 GAGCCCATCTCCTCTGGA 57.284 61.111 0.00 0.00 35.70 3.86
1139 1401 1.679944 GGCGGGCATGAGCATATATGT 60.680 52.381 14.14 1.43 44.61 2.29
1140 1402 1.019673 GGCGGGCATGAGCATATATG 58.980 55.000 8.45 8.45 44.61 1.78
1141 1403 0.107017 GGGCGGGCATGAGCATATAT 60.107 55.000 3.27 0.00 44.61 0.86
1142 1404 1.299648 GGGCGGGCATGAGCATATA 59.700 57.895 3.27 0.00 44.61 0.86
1152 1414 3.969250 GACGAGAAATGGGCGGGCA 62.969 63.158 3.27 0.00 0.00 5.36
1188 1450 0.178950 TCCATCCGATGAGAGAGGGG 60.179 60.000 10.12 0.00 34.70 4.79
1190 1452 0.602562 GCTCCATCCGATGAGAGAGG 59.397 60.000 21.66 3.34 32.66 3.69
1198 1467 3.063526 CATCCCGCTCCATCCGAT 58.936 61.111 0.00 0.00 0.00 4.18
1209 1478 1.030457 ACTCCGTACTAAGCATCCCG 58.970 55.000 0.00 0.00 0.00 5.14
1234 1503 9.329913 CACCTTTATGTTTTATCTTTCTGAACG 57.670 33.333 0.00 0.00 0.00 3.95
1356 1625 5.133941 TGCTACTCTACCATCTAAGGTCTG 58.866 45.833 0.00 0.00 42.06 3.51
1428 1700 2.476854 GGTTTCTGCGCACTCAATGATC 60.477 50.000 5.66 0.00 0.00 2.92
1434 1706 2.253758 GCTGGTTTCTGCGCACTCA 61.254 57.895 5.66 0.00 0.00 3.41
1472 1744 0.923729 ATCATGTTACCCCCAGGCCA 60.924 55.000 5.01 0.00 36.11 5.36
1485 1757 9.368416 ACTAGTGGTATATCTAACACATCATGT 57.632 33.333 8.80 0.00 46.21 3.21
1554 1834 5.745294 CACAGTGGCATAGCAAAATGTATTC 59.255 40.000 0.00 0.00 0.00 1.75
1607 1895 7.829211 AGTAGTGCAATCTTCCTAAAAGCAATA 59.171 33.333 0.00 0.00 31.12 1.90
1633 1921 3.193691 GCAGTAGAAGCAGAGGAAGTACA 59.806 47.826 0.00 0.00 0.00 2.90
1685 1973 2.969238 CAGCCATCCCGCGACATC 60.969 66.667 8.23 0.00 0.00 3.06
1744 2036 1.661112 GTAACTGTTCTGGCAGCGATC 59.339 52.381 10.34 0.55 39.96 3.69
1860 2152 6.433093 GGTACAAATCCAAACATGGAGTTACT 59.567 38.462 9.88 2.46 43.39 2.24
1901 2193 7.381678 CGGTTAACTATCAGAACAGTATAAGGC 59.618 40.741 5.42 0.00 0.00 4.35
1925 2217 4.228912 GAAGCATCAATATGTTTCCCGG 57.771 45.455 0.00 0.00 43.65 5.73
1972 2288 5.611374 CACTCAAGACTAAAACAGAGGGAA 58.389 41.667 0.00 0.00 0.00 3.97
1990 2306 0.692476 AAGCCATACACCAGCACTCA 59.308 50.000 0.00 0.00 0.00 3.41
1999 2315 8.148351 TCCACTTCTATAATGTAAGCCATACAC 58.852 37.037 2.34 0.00 46.90 2.90
2001 2317 7.819900 CCTCCACTTCTATAATGTAAGCCATAC 59.180 40.741 0.00 0.00 31.97 2.39
2008 2324 5.071788 CCTGCCCTCCACTTCTATAATGTAA 59.928 44.000 0.00 0.00 0.00 2.41
2175 2491 0.883833 AGAAATGCCAGGTTTCAGCG 59.116 50.000 5.55 0.00 37.89 5.18
2251 2567 8.241497 AGCTATATTCAAAATGGCAATCTCAA 57.759 30.769 0.00 0.00 33.62 3.02
2283 2602 8.540388 TCAAATACCTAGCAAACAGAGAATAGT 58.460 33.333 0.00 0.00 0.00 2.12
2304 2624 2.540515 CCATCGTCGTGTAGCTCAAAT 58.459 47.619 0.00 0.00 0.00 2.32
2481 2801 1.677637 GGGAGTAGTGCTTCTCGGGG 61.678 65.000 0.88 0.00 0.00 5.73
2538 2858 6.423776 TCAAAAGAGGCCATTTCAAAATCT 57.576 33.333 5.01 0.00 0.00 2.40
2604 2924 9.108111 TCTTACTTCTTGGAAGGAATAAGGTAA 57.892 33.333 11.26 0.00 0.00 2.85
2630 2950 6.286758 AGCAATATGAACATCTCTGATCGTT 58.713 36.000 0.00 0.00 0.00 3.85
2632 2952 6.591261 CAAGCAATATGAACATCTCTGATCG 58.409 40.000 0.00 0.00 0.00 3.69
2642 2962 2.164827 CTGCCTGCAAGCAATATGAACA 59.835 45.455 11.84 0.00 43.52 3.18
2658 2978 5.423015 CGATAATGCCATAATAGACTGCCT 58.577 41.667 0.00 0.00 0.00 4.75
2659 2979 4.572389 CCGATAATGCCATAATAGACTGCC 59.428 45.833 0.00 0.00 0.00 4.85
2681 3005 4.259952 GCCAATACAGGAAGGCCC 57.740 61.111 0.00 0.00 41.25 5.80
2722 3046 4.745649 AGACTAAAATACAGACCTCGTGC 58.254 43.478 0.00 0.00 0.00 5.34
2808 3134 9.132521 CAAGCTCAAACTTTATTCCACTAATTG 57.867 33.333 0.00 0.00 0.00 2.32
2853 3513 2.601763 ACGAAACGAGTGAGTGTTTGAC 59.398 45.455 0.00 0.00 38.35 3.18
2864 3524 1.925229 TTTTGGACGACGAAACGAGT 58.075 45.000 0.00 0.00 37.03 4.18
2870 3530 4.422546 AACAAACTTTTTGGACGACGAA 57.577 36.364 0.00 0.00 0.00 3.85
2884 3544 5.584649 TGAGTCGAACTGAATGAAACAAACT 59.415 36.000 0.00 0.00 0.00 2.66
2911 3571 1.318576 AAGGGTCCAAAAAGTCTGCG 58.681 50.000 0.00 0.00 0.00 5.18
2936 3598 6.698008 TCAAGGAATTTGGCATGTATACAG 57.302 37.500 11.91 5.01 37.39 2.74
2979 3644 7.620888 ACCAAATGGATAATTCATCAAGGAACT 59.379 33.333 6.42 0.00 38.82 3.01
3034 3800 4.469945 CCACTTTCAGACAGTAGGGGAATA 59.530 45.833 0.00 0.00 32.77 1.75
3037 4060 2.257207 CCACTTTCAGACAGTAGGGGA 58.743 52.381 0.00 0.00 32.77 4.81
3043 4066 3.627395 TGACAACCACTTTCAGACAGT 57.373 42.857 0.00 0.00 0.00 3.55
3054 4077 8.296713 ACTAATTGTATGTTCAATGACAACCAC 58.703 33.333 0.00 0.00 37.96 4.16
3076 4099 9.295825 ACCATCAAGTTGATCACAATAAACTAA 57.704 29.630 15.60 0.00 35.79 2.24
3077 4100 8.729756 CACCATCAAGTTGATCACAATAAACTA 58.270 33.333 15.60 0.00 35.79 2.24
3078 4101 7.309377 CCACCATCAAGTTGATCACAATAAACT 60.309 37.037 15.60 0.00 38.09 2.66
3079 4102 6.808212 CCACCATCAAGTTGATCACAATAAAC 59.192 38.462 15.60 0.00 34.28 2.01
3081 4104 5.105797 GCCACCATCAAGTTGATCACAATAA 60.106 40.000 15.60 0.00 34.28 1.40
3082 4105 4.398988 GCCACCATCAAGTTGATCACAATA 59.601 41.667 15.60 0.00 34.28 1.90
3083 4106 3.194116 GCCACCATCAAGTTGATCACAAT 59.806 43.478 15.60 0.00 34.28 2.71
3115 4234 5.357032 TCGGTTGCTTCTTCTTTTTCTTTCT 59.643 36.000 0.00 0.00 0.00 2.52
3197 4319 5.545063 AAGAAATAGGGTTTGGTTTGGTG 57.455 39.130 0.00 0.00 0.00 4.17
3230 4352 7.063074 CGACTCGAAATCCATGGGTATAATAAC 59.937 40.741 13.02 0.00 0.00 1.89
3238 4360 0.462047 GCGACTCGAAATCCATGGGT 60.462 55.000 13.02 0.00 0.00 4.51
3239 4361 0.179073 AGCGACTCGAAATCCATGGG 60.179 55.000 13.02 0.00 0.00 4.00
3240 4362 1.212616 GAGCGACTCGAAATCCATGG 58.787 55.000 4.97 4.97 0.00 3.66
3289 4411 1.444553 CCTGGAACTGCGACTCGTC 60.445 63.158 0.00 0.00 0.00 4.20
3290 4412 2.651361 CCTGGAACTGCGACTCGT 59.349 61.111 0.00 0.00 0.00 4.18
3291 4413 2.125912 CCCTGGAACTGCGACTCG 60.126 66.667 0.00 0.00 0.00 4.18
3292 4414 2.435059 GCCCTGGAACTGCGACTC 60.435 66.667 0.00 0.00 0.00 3.36
3293 4415 4.021925 GGCCCTGGAACTGCGACT 62.022 66.667 0.00 0.00 0.00 4.18
3297 4419 3.959991 GAGTCGGCCCTGGAACTGC 62.960 68.421 0.00 0.00 0.00 4.40
3298 4420 2.266055 GAGTCGGCCCTGGAACTG 59.734 66.667 0.00 0.00 0.00 3.16
3299 4421 2.203788 TGAGTCGGCCCTGGAACT 60.204 61.111 0.00 0.00 0.00 3.01
3300 4422 2.266055 CTGAGTCGGCCCTGGAAC 59.734 66.667 0.00 0.00 0.00 3.62
3301 4423 3.706373 GCTGAGTCGGCCCTGGAA 61.706 66.667 13.34 0.00 0.00 3.53
3308 4430 3.134792 TCGAGAGGCTGAGTCGGC 61.135 66.667 16.04 16.04 34.43 5.54
3309 4431 2.795297 GTCGAGAGGCTGAGTCGG 59.205 66.667 9.79 0.00 34.43 4.79
3317 4439 1.450669 AGGAGTCGAGTCGAGAGGC 60.451 63.158 17.12 3.92 36.23 4.70
3318 4440 1.092921 CCAGGAGTCGAGTCGAGAGG 61.093 65.000 17.12 9.62 36.23 3.69
3319 4441 1.092921 CCCAGGAGTCGAGTCGAGAG 61.093 65.000 17.12 4.18 36.23 3.20
3320 4442 1.078356 CCCAGGAGTCGAGTCGAGA 60.078 63.158 17.12 0.00 36.23 4.04
3321 4443 0.464735 ATCCCAGGAGTCGAGTCGAG 60.465 60.000 17.12 3.41 36.23 4.04
3322 4444 0.748367 CATCCCAGGAGTCGAGTCGA 60.748 60.000 12.09 12.09 0.00 4.20
3323 4445 0.748367 TCATCCCAGGAGTCGAGTCG 60.748 60.000 13.95 6.09 0.00 4.18
3324 4446 1.028905 CTCATCCCAGGAGTCGAGTC 58.971 60.000 12.02 12.02 0.00 3.36
3325 4447 0.333312 ACTCATCCCAGGAGTCGAGT 59.667 55.000 9.34 9.34 41.63 4.18
3326 4448 3.199290 ACTCATCCCAGGAGTCGAG 57.801 57.895 8.34 8.34 41.63 4.04
3331 4453 1.739049 GCTCGACTCATCCCAGGAG 59.261 63.158 0.00 0.00 38.36 3.69
3332 4454 2.121538 CGCTCGACTCATCCCAGGA 61.122 63.158 0.00 0.00 0.00 3.86
3333 4455 2.121538 TCGCTCGACTCATCCCAGG 61.122 63.158 0.00 0.00 0.00 4.45
3334 4456 1.064946 GTCGCTCGACTCATCCCAG 59.935 63.158 14.42 0.00 41.57 4.45
3335 4457 3.197614 GTCGCTCGACTCATCCCA 58.802 61.111 14.42 0.00 41.57 4.37
3349 4471 0.025256 GAGACTAGTCGCGTGAGTCG 59.975 60.000 22.50 6.69 43.57 4.18
3350 4472 0.025256 CGAGACTAGTCGCGTGAGTC 59.975 60.000 32.63 21.80 45.49 3.36
3351 4473 2.079874 CGAGACTAGTCGCGTGAGT 58.920 57.895 32.63 11.67 45.49 3.41
3352 4474 4.957363 CGAGACTAGTCGCGTGAG 57.043 61.111 32.63 11.86 45.49 3.51
3362 4484 3.865011 AGTCGTGACTAGTCGAGACTA 57.135 47.619 33.26 13.92 42.66 2.59
3363 4485 2.747396 AGTCGTGACTAGTCGAGACT 57.253 50.000 30.95 30.95 45.02 3.24
3379 4501 0.794473 CCCAAAAACCGCGACTAGTC 59.206 55.000 8.23 13.18 0.00 2.59
3380 4502 0.107268 ACCCAAAAACCGCGACTAGT 59.893 50.000 8.23 0.00 0.00 2.57
3381 4503 0.794473 GACCCAAAAACCGCGACTAG 59.206 55.000 8.23 0.00 0.00 2.57
3382 4504 0.945265 CGACCCAAAAACCGCGACTA 60.945 55.000 8.23 0.00 0.00 2.59
3383 4505 2.248835 CGACCCAAAAACCGCGACT 61.249 57.895 8.23 0.00 0.00 4.18
3384 4506 1.774046 TTCGACCCAAAAACCGCGAC 61.774 55.000 8.23 0.00 0.00 5.19
3385 4507 1.523258 TTCGACCCAAAAACCGCGA 60.523 52.632 8.23 0.00 0.00 5.87
3386 4508 1.369568 GTTCGACCCAAAAACCGCG 60.370 57.895 0.00 0.00 0.00 6.46
3387 4509 1.369568 CGTTCGACCCAAAAACCGC 60.370 57.895 0.00 0.00 0.00 5.68
3388 4510 0.041926 GTCGTTCGACCCAAAAACCG 60.042 55.000 13.42 0.00 0.00 4.44
3389 4511 1.262417 GAGTCGTTCGACCCAAAAACC 59.738 52.381 19.41 0.00 35.90 3.27
3390 4512 2.657960 GAGTCGTTCGACCCAAAAAC 57.342 50.000 19.41 0.00 35.90 2.43
3401 4523 2.876645 CGCTGCCTCGAGTCGTTC 60.877 66.667 13.12 3.64 0.00 3.95
3407 4529 4.218578 ATCCAGCGCTGCCTCGAG 62.219 66.667 31.96 16.91 0.00 4.04
3408 4530 4.212913 GATCCAGCGCTGCCTCGA 62.213 66.667 31.96 22.77 0.00 4.04
3409 4531 4.218578 AGATCCAGCGCTGCCTCG 62.219 66.667 31.96 18.06 0.00 4.63
3410 4532 2.588314 CAGATCCAGCGCTGCCTC 60.588 66.667 31.96 26.51 0.00 4.70
3411 4533 4.172512 CCAGATCCAGCGCTGCCT 62.173 66.667 31.96 22.88 0.00 4.75
3412 4534 4.166888 TCCAGATCCAGCGCTGCC 62.167 66.667 31.96 21.07 0.00 4.85
3413 4535 2.588314 CTCCAGATCCAGCGCTGC 60.588 66.667 31.96 18.29 0.00 5.25
3414 4536 2.588314 GCTCCAGATCCAGCGCTG 60.588 66.667 30.52 30.52 0.00 5.18
3415 4537 3.079478 TGCTCCAGATCCAGCGCT 61.079 61.111 2.64 2.64 38.59 5.92
3416 4538 2.894387 GTGCTCCAGATCCAGCGC 60.894 66.667 0.00 0.00 38.59 5.92
3417 4539 1.227205 GAGTGCTCCAGATCCAGCG 60.227 63.158 4.85 0.00 38.59 5.18
3418 4540 0.104671 GAGAGTGCTCCAGATCCAGC 59.895 60.000 2.59 2.59 35.01 4.85
3449 4571 4.406173 GCACAGCAGCAGCAGCAG 62.406 66.667 12.92 6.60 45.49 4.24
3450 4572 4.949098 AGCACAGCAGCAGCAGCA 62.949 61.111 12.92 0.00 45.49 4.41
3451 4573 4.406173 CAGCACAGCAGCAGCAGC 62.406 66.667 3.17 0.46 45.49 5.25
3452 4574 4.406173 GCAGCACAGCAGCAGCAG 62.406 66.667 3.17 0.00 45.12 4.24
3455 4577 3.432588 GAGGCAGCACAGCAGCAG 61.433 66.667 8.58 0.00 42.80 4.24
3502 4624 2.871099 CTTCAGCAGCAGCAGCAG 59.129 61.111 12.92 3.97 45.49 4.24
3511 4633 3.036783 GCCGCTTCAGCTTCAGCAG 62.037 63.158 13.20 4.12 45.16 4.24
3512 4634 3.052082 GCCGCTTCAGCTTCAGCA 61.052 61.111 13.20 0.00 45.16 4.41
3513 4635 2.524636 CTTGCCGCTTCAGCTTCAGC 62.525 60.000 4.05 4.05 39.32 4.26
3514 4636 0.952497 TCTTGCCGCTTCAGCTTCAG 60.952 55.000 0.00 0.00 39.32 3.02
3515 4637 0.952497 CTCTTGCCGCTTCAGCTTCA 60.952 55.000 0.00 0.00 39.32 3.02
3516 4638 1.642952 CCTCTTGCCGCTTCAGCTTC 61.643 60.000 0.00 0.00 39.32 3.86
3517 4639 1.673665 CCTCTTGCCGCTTCAGCTT 60.674 57.895 0.00 0.00 39.32 3.74
3518 4640 2.046507 CCTCTTGCCGCTTCAGCT 60.047 61.111 0.00 0.00 39.32 4.24
3519 4641 2.046892 TCCTCTTGCCGCTTCAGC 60.047 61.111 0.00 0.00 37.78 4.26
3520 4642 2.105466 GCTCCTCTTGCCGCTTCAG 61.105 63.158 0.00 0.00 0.00 3.02
3521 4643 2.046892 GCTCCTCTTGCCGCTTCA 60.047 61.111 0.00 0.00 0.00 3.02
3522 4644 2.046892 TGCTCCTCTTGCCGCTTC 60.047 61.111 0.00 0.00 0.00 3.86
3523 4645 2.046507 CTGCTCCTCTTGCCGCTT 60.047 61.111 0.00 0.00 0.00 4.68
3524 4646 4.093291 CCTGCTCCTCTTGCCGCT 62.093 66.667 0.00 0.00 0.00 5.52
3526 4648 4.093291 AGCCTGCTCCTCTTGCCG 62.093 66.667 0.00 0.00 0.00 5.69
3527 4649 2.438075 CAGCCTGCTCCTCTTGCC 60.438 66.667 0.00 0.00 0.00 4.52
3528 4650 2.438075 CCAGCCTGCTCCTCTTGC 60.438 66.667 0.00 0.00 0.00 4.01
3529 4651 2.254737 CTCCCAGCCTGCTCCTCTTG 62.255 65.000 0.00 0.00 0.00 3.02
3530 4652 1.994507 CTCCCAGCCTGCTCCTCTT 60.995 63.158 0.00 0.00 0.00 2.85
3531 4653 2.365370 CTCCCAGCCTGCTCCTCT 60.365 66.667 0.00 0.00 0.00 3.69
3532 4654 3.478274 CCTCCCAGCCTGCTCCTC 61.478 72.222 0.00 0.00 0.00 3.71
3533 4655 3.999705 CTCCTCCCAGCCTGCTCCT 63.000 68.421 0.00 0.00 0.00 3.69
3534 4656 3.478274 CTCCTCCCAGCCTGCTCC 61.478 72.222 0.00 0.00 0.00 4.70
3535 4657 3.478274 CCTCCTCCCAGCCTGCTC 61.478 72.222 0.00 0.00 0.00 4.26
3536 4658 3.999705 CTCCTCCTCCCAGCCTGCT 63.000 68.421 0.00 0.00 0.00 4.24
3537 4659 3.478274 CTCCTCCTCCCAGCCTGC 61.478 72.222 0.00 0.00 0.00 4.85
3538 4660 3.478274 GCTCCTCCTCCCAGCCTG 61.478 72.222 0.00 0.00 0.00 4.85
3542 4664 3.465403 CACCGCTCCTCCTCCCAG 61.465 72.222 0.00 0.00 0.00 4.45
3546 4668 3.672295 CTTGCCACCGCTCCTCCTC 62.672 68.421 0.00 0.00 35.36 3.71
3547 4669 3.710722 CTTGCCACCGCTCCTCCT 61.711 66.667 0.00 0.00 35.36 3.69
3548 4670 3.672295 CTCTTGCCACCGCTCCTCC 62.672 68.421 0.00 0.00 35.36 4.30
3549 4671 2.125350 CTCTTGCCACCGCTCCTC 60.125 66.667 0.00 0.00 35.36 3.71
3550 4672 2.604686 TCTCTTGCCACCGCTCCT 60.605 61.111 0.00 0.00 35.36 3.69
3551 4673 2.125350 CTCTCTTGCCACCGCTCC 60.125 66.667 0.00 0.00 35.36 4.70
3552 4674 2.817396 GCTCTCTTGCCACCGCTC 60.817 66.667 0.00 0.00 35.36 5.03
3553 4675 3.317571 AGCTCTCTTGCCACCGCT 61.318 61.111 0.00 0.00 35.36 5.52
3554 4676 3.123620 CAGCTCTCTTGCCACCGC 61.124 66.667 0.00 0.00 0.00 5.68
3555 4677 3.123620 GCAGCTCTCTTGCCACCG 61.124 66.667 0.00 0.00 0.00 4.94
3556 4678 2.039405 CAGCAGCTCTCTTGCCACC 61.039 63.158 0.00 0.00 0.00 4.61
3557 4679 2.688794 GCAGCAGCTCTCTTGCCAC 61.689 63.158 0.00 0.00 37.91 5.01
3558 4680 2.359602 GCAGCAGCTCTCTTGCCA 60.360 61.111 0.00 0.00 37.91 4.92
3559 4681 3.497932 CGCAGCAGCTCTCTTGCC 61.498 66.667 0.00 0.00 39.10 4.52
3560 4682 3.497932 CCGCAGCAGCTCTCTTGC 61.498 66.667 0.00 0.00 39.10 4.01
3561 4683 2.818714 CCCGCAGCAGCTCTCTTG 60.819 66.667 0.00 0.00 39.10 3.02
3562 4684 4.093291 CCCCGCAGCAGCTCTCTT 62.093 66.667 0.00 0.00 39.10 2.85
3569 4691 3.965539 CTCAACTCCCCCGCAGCAG 62.966 68.421 0.00 0.00 0.00 4.24
3570 4692 4.020617 CTCAACTCCCCCGCAGCA 62.021 66.667 0.00 0.00 0.00 4.41
3571 4693 3.672295 CTCTCAACTCCCCCGCAGC 62.672 68.421 0.00 0.00 0.00 5.25
3572 4694 1.333636 ATCTCTCAACTCCCCCGCAG 61.334 60.000 0.00 0.00 0.00 5.18
3573 4695 1.306141 ATCTCTCAACTCCCCCGCA 60.306 57.895 0.00 0.00 0.00 5.69
3574 4696 1.443828 GATCTCTCAACTCCCCCGC 59.556 63.158 0.00 0.00 0.00 6.13
3575 4697 0.687757 TGGATCTCTCAACTCCCCCG 60.688 60.000 0.00 0.00 0.00 5.73
3576 4698 1.696884 GATGGATCTCTCAACTCCCCC 59.303 57.143 0.00 0.00 0.00 5.40
3577 4699 1.342819 CGATGGATCTCTCAACTCCCC 59.657 57.143 0.00 0.00 0.00 4.81
3578 4700 1.270041 GCGATGGATCTCTCAACTCCC 60.270 57.143 0.00 0.00 0.00 4.30
3579 4701 1.686052 AGCGATGGATCTCTCAACTCC 59.314 52.381 0.00 0.00 0.00 3.85
3580 4702 2.360483 TCAGCGATGGATCTCTCAACTC 59.640 50.000 0.00 0.00 0.00 3.01
3581 4703 2.361757 CTCAGCGATGGATCTCTCAACT 59.638 50.000 0.00 0.00 0.00 3.16
3582 4704 2.360483 TCTCAGCGATGGATCTCTCAAC 59.640 50.000 0.00 0.00 0.00 3.18
3583 4705 2.622470 CTCTCAGCGATGGATCTCTCAA 59.378 50.000 0.00 0.00 0.00 3.02
3584 4706 2.228925 CTCTCAGCGATGGATCTCTCA 58.771 52.381 0.00 0.00 0.00 3.27
3585 4707 1.541147 CCTCTCAGCGATGGATCTCTC 59.459 57.143 0.00 0.00 0.00 3.20
3586 4708 1.144708 TCCTCTCAGCGATGGATCTCT 59.855 52.381 0.00 0.00 0.00 3.10
3587 4709 1.541147 CTCCTCTCAGCGATGGATCTC 59.459 57.143 0.00 0.00 0.00 2.75
3588 4710 1.133513 ACTCCTCTCAGCGATGGATCT 60.134 52.381 0.00 0.00 0.00 2.75
3589 4711 1.000385 CACTCCTCTCAGCGATGGATC 60.000 57.143 0.00 0.00 0.00 3.36
3590 4712 1.039068 CACTCCTCTCAGCGATGGAT 58.961 55.000 0.00 0.00 0.00 3.41
3591 4713 1.039785 CCACTCCTCTCAGCGATGGA 61.040 60.000 0.00 0.00 0.00 3.41
3592 4714 1.326213 ACCACTCCTCTCAGCGATGG 61.326 60.000 0.00 0.00 0.00 3.51
3593 4715 0.179116 CACCACTCCTCTCAGCGATG 60.179 60.000 0.00 0.00 0.00 3.84
3594 4716 1.326213 CCACCACTCCTCTCAGCGAT 61.326 60.000 0.00 0.00 0.00 4.58
3595 4717 1.979155 CCACCACTCCTCTCAGCGA 60.979 63.158 0.00 0.00 0.00 4.93
3596 4718 1.979155 TCCACCACTCCTCTCAGCG 60.979 63.158 0.00 0.00 0.00 5.18
3597 4719 0.902516 AGTCCACCACTCCTCTCAGC 60.903 60.000 0.00 0.00 0.00 4.26
3598 4720 0.894141 CAGTCCACCACTCCTCTCAG 59.106 60.000 0.00 0.00 30.26 3.35
3599 4721 0.542938 CCAGTCCACCACTCCTCTCA 60.543 60.000 0.00 0.00 30.26 3.27
3600 4722 0.543174 ACCAGTCCACCACTCCTCTC 60.543 60.000 0.00 0.00 30.26 3.20
3601 4723 0.833834 CACCAGTCCACCACTCCTCT 60.834 60.000 0.00 0.00 30.26 3.69
3602 4724 1.674057 CACCAGTCCACCACTCCTC 59.326 63.158 0.00 0.00 30.26 3.71
3603 4725 1.843376 CCACCAGTCCACCACTCCT 60.843 63.158 0.00 0.00 30.26 3.69
3604 4726 2.750350 CCACCAGTCCACCACTCC 59.250 66.667 0.00 0.00 30.26 3.85
3605 4727 2.032681 GCCACCAGTCCACCACTC 59.967 66.667 0.00 0.00 30.26 3.51
3606 4728 3.570212 GGCCACCAGTCCACCACT 61.570 66.667 0.00 0.00 34.67 4.00
3607 4729 3.429372 TTGGCCACCAGTCCACCAC 62.429 63.158 3.88 0.00 33.81 4.16
3608 4730 3.099841 TTGGCCACCAGTCCACCA 61.100 61.111 3.88 0.00 33.81 4.17
3609 4731 2.282462 CTTGGCCACCAGTCCACC 60.282 66.667 3.88 0.00 33.81 4.61
3610 4732 1.302832 CTCTTGGCCACCAGTCCAC 60.303 63.158 3.88 0.00 33.81 4.02
3611 4733 3.160585 CTCTTGGCCACCAGTCCA 58.839 61.111 3.88 0.00 33.81 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.