Multiple sequence alignment - TraesCS6B01G318600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G318600 chr6B 100.000 3130 0 0 1 3130 566341520 566344649 0.000000e+00 5781.0
1 TraesCS6B01G318600 chr6B 93.892 704 43 0 1 704 365725302 365726005 0.000000e+00 1062.0
2 TraesCS6B01G318600 chr6B 92.898 704 50 0 1 704 368596854 368597557 0.000000e+00 1024.0
3 TraesCS6B01G318600 chr6B 91.938 707 53 3 1 704 708224216 708223511 0.000000e+00 987.0
4 TraesCS6B01G318600 chr6B 87.261 157 18 2 2974 3130 713330752 713330598 8.920000e-41 178.0
5 TraesCS6B01G318600 chr6A 90.967 1572 61 22 709 2254 520845639 520847155 0.000000e+00 2041.0
6 TraesCS6B01G318600 chr6A 81.975 638 58 24 2337 2954 520847242 520847842 3.630000e-134 488.0
7 TraesCS6B01G318600 chr6D 93.694 1332 45 9 1039 2358 379981674 379980370 0.000000e+00 1958.0
8 TraesCS6B01G318600 chr6D 89.973 369 23 6 2342 2705 379980044 379979685 6.110000e-127 464.0
9 TraesCS6B01G318600 chr6D 89.385 358 11 6 708 1039 379982364 379982008 2.890000e-115 425.0
10 TraesCS6B01G318600 chr6D 88.444 225 15 5 2741 2954 379979224 379979000 8.610000e-66 261.0
11 TraesCS6B01G318600 chr6D 100.000 42 0 0 1645 1686 27035054 27035013 9.310000e-11 78.7
12 TraesCS6B01G318600 chr3B 92.472 704 52 1 1 704 785605995 785606697 0.000000e+00 1005.0
13 TraesCS6B01G318600 chr5B 92.340 705 52 2 1 704 529380071 529379368 0.000000e+00 1002.0
14 TraesCS6B01G318600 chr1B 92.199 705 53 2 1 704 617810735 617811438 0.000000e+00 996.0
15 TraesCS6B01G318600 chr2B 92.176 703 53 2 1 703 250231680 250232380 0.000000e+00 992.0
16 TraesCS6B01G318600 chr7B 91.915 705 55 2 1 704 12292668 12291965 0.000000e+00 985.0
17 TraesCS6B01G318600 chr4B 91.631 705 57 2 1 704 294598507 294597804 0.000000e+00 974.0
18 TraesCS6B01G318600 chr7A 87.500 168 19 2 2963 3130 32629521 32629356 3.190000e-45 193.0
19 TraesCS6B01G318600 chr7A 87.898 157 17 2 2974 3130 198415608 198415454 1.920000e-42 183.0
20 TraesCS6B01G318600 chr7A 87.261 157 18 2 2974 3130 234540556 234540710 8.920000e-41 178.0
21 TraesCS6B01G318600 chr4A 88.535 157 16 2 2974 3130 591931476 591931630 4.120000e-44 189.0
22 TraesCS6B01G318600 chr5A 87.898 157 17 2 2974 3130 621864210 621864056 1.920000e-42 183.0
23 TraesCS6B01G318600 chr5A 85.714 168 21 3 2963 3130 524008395 524008559 1.150000e-39 174.0
24 TraesCS6B01G318600 chr1D 88.435 147 15 2 2984 3130 38563047 38562903 3.210000e-40 176.0
25 TraesCS6B01G318600 chr5D 84.066 182 23 5 2951 3128 438091700 438091879 1.490000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G318600 chr6B 566341520 566344649 3129 False 5781.0 5781 100.000 1 3130 1 chr6B.!!$F3 3129
1 TraesCS6B01G318600 chr6B 365725302 365726005 703 False 1062.0 1062 93.892 1 704 1 chr6B.!!$F1 703
2 TraesCS6B01G318600 chr6B 368596854 368597557 703 False 1024.0 1024 92.898 1 704 1 chr6B.!!$F2 703
3 TraesCS6B01G318600 chr6B 708223511 708224216 705 True 987.0 987 91.938 1 704 1 chr6B.!!$R1 703
4 TraesCS6B01G318600 chr6A 520845639 520847842 2203 False 1264.5 2041 86.471 709 2954 2 chr6A.!!$F1 2245
5 TraesCS6B01G318600 chr6D 379979000 379982364 3364 True 777.0 1958 90.374 708 2954 4 chr6D.!!$R2 2246
6 TraesCS6B01G318600 chr3B 785605995 785606697 702 False 1005.0 1005 92.472 1 704 1 chr3B.!!$F1 703
7 TraesCS6B01G318600 chr5B 529379368 529380071 703 True 1002.0 1002 92.340 1 704 1 chr5B.!!$R1 703
8 TraesCS6B01G318600 chr1B 617810735 617811438 703 False 996.0 996 92.199 1 704 1 chr1B.!!$F1 703
9 TraesCS6B01G318600 chr2B 250231680 250232380 700 False 992.0 992 92.176 1 703 1 chr2B.!!$F1 702
10 TraesCS6B01G318600 chr7B 12291965 12292668 703 True 985.0 985 91.915 1 704 1 chr7B.!!$R1 703
11 TraesCS6B01G318600 chr4B 294597804 294598507 703 True 974.0 974 91.631 1 704 1 chr4B.!!$R1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 665 0.334335 TGTCTTGCCCATGCCCATTA 59.666 50.0 0.0 0.0 36.33 1.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2507 3290 0.383491 CGTGCAGAGCAAGAAACACG 60.383 55.0 0.0 0.0 41.47 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.752694 CTGCCCAAACCCATACCCG 60.753 63.158 0.00 0.00 0.00 5.28
54 55 4.380791 AGAAACCTTCTATACCCACCCAT 58.619 43.478 0.00 0.00 38.49 4.00
56 57 4.519906 AACCTTCTATACCCACCCATTG 57.480 45.455 0.00 0.00 0.00 2.82
208 212 7.363431 TCAAGTGATGATAAGCGAGTAGTATG 58.637 38.462 0.00 0.00 31.50 2.39
212 216 5.185828 TGATGATAAGCGAGTAGTATGGCAT 59.814 40.000 4.88 4.88 0.00 4.40
214 218 4.522789 TGATAAGCGAGTAGTATGGCATCA 59.477 41.667 1.65 0.00 0.00 3.07
277 281 2.416296 CGAGTATGAGCAACGGTTGGTA 60.416 50.000 23.86 13.37 42.23 3.25
403 409 6.603599 CGAGAAGACATATATGATGTAGGGGA 59.396 42.308 19.63 0.00 31.52 4.81
430 436 1.225854 GAAAGCGCGTGTGAGCATC 60.226 57.895 8.43 0.00 44.15 3.91
484 490 1.225694 AGGGATAGGCCATGGGAGTTA 59.774 52.381 15.13 0.00 38.95 2.24
492 498 2.301346 GCCATGGGAGTTAGATGTTGG 58.699 52.381 15.13 0.00 0.00 3.77
501 507 4.513442 GAGTTAGATGTTGGCACCACATA 58.487 43.478 4.85 0.00 0.00 2.29
518 524 8.850156 GCACCACATATCATAGGACTTATTTTT 58.150 33.333 0.00 0.00 0.00 1.94
578 584 6.313324 TCATGGATGCAATTTCATACCCATA 58.687 36.000 9.82 0.41 0.00 2.74
591 597 5.285401 TCATACCCATACCCTACCCATATG 58.715 45.833 0.00 0.00 0.00 1.78
601 608 1.336755 CTACCCATATGTTTTGCGGGC 59.663 52.381 1.24 0.00 40.87 6.13
658 665 0.334335 TGTCTTGCCCATGCCCATTA 59.666 50.000 0.00 0.00 36.33 1.90
665 672 2.040947 TGCCCATGCCCATTATATTCGA 59.959 45.455 0.00 0.00 36.33 3.71
666 673 3.088532 GCCCATGCCCATTATATTCGAA 58.911 45.455 0.00 0.00 0.00 3.71
704 711 1.600511 CCGTACCCATGGGCAAAACC 61.601 60.000 31.73 10.92 39.32 3.27
705 712 0.610785 CGTACCCATGGGCAAAACCT 60.611 55.000 31.73 12.05 39.32 3.50
706 713 1.340211 CGTACCCATGGGCAAAACCTA 60.340 52.381 31.73 10.92 39.32 3.08
739 746 2.507102 CGAGCGAGCACAACGGAT 60.507 61.111 0.00 0.00 0.00 4.18
872 899 2.769095 CACAAAAGGTGGGGGAGAAAAA 59.231 45.455 0.00 0.00 44.04 1.94
897 924 1.591327 AAAACAAAAGCCAGGCGCG 60.591 52.632 5.55 0.00 44.76 6.86
1008 1041 4.204028 ACCGCACCCTGCCTTTGT 62.204 61.111 0.00 0.00 41.12 2.83
1010 1043 3.673484 CGCACCCTGCCTTTGTGG 61.673 66.667 0.00 0.00 41.12 4.17
1151 1523 2.040359 CCTTCCCCTCCCTCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
1474 1858 2.579787 CTCGTCGCCGCTAACAGG 60.580 66.667 0.00 0.00 0.00 4.00
1731 2118 2.892640 CAAGGACGGCATCGAGGA 59.107 61.111 0.00 0.00 40.11 3.71
1735 2122 4.570663 GACGGCATCGAGGACGGG 62.571 72.222 30.35 2.79 45.67 5.28
2017 2410 0.739813 ACATTTGCGGTAGCTCGGTC 60.740 55.000 0.00 0.00 45.42 4.79
2049 2442 8.308931 CAGAAATTCTTTTTGATCATGAAGGGA 58.691 33.333 14.89 2.91 0.00 4.20
2067 2461 2.289444 GGGAAGCGGGATGAAATCGATA 60.289 50.000 0.00 0.00 46.86 2.92
2081 2475 2.631160 TCGATATGAATTGGCGGGTT 57.369 45.000 0.00 0.00 0.00 4.11
2082 2476 3.755112 TCGATATGAATTGGCGGGTTA 57.245 42.857 0.00 0.00 0.00 2.85
2083 2477 4.074627 TCGATATGAATTGGCGGGTTAA 57.925 40.909 0.00 0.00 0.00 2.01
2084 2478 4.647611 TCGATATGAATTGGCGGGTTAAT 58.352 39.130 0.00 0.00 0.00 1.40
2085 2479 5.067273 TCGATATGAATTGGCGGGTTAATT 58.933 37.500 0.00 0.00 0.00 1.40
2086 2480 5.533154 TCGATATGAATTGGCGGGTTAATTT 59.467 36.000 0.00 0.00 0.00 1.82
2172 2574 2.945008 GCAATCAACCAATCCGATGAGA 59.055 45.455 0.00 0.00 0.00 3.27
2224 2626 4.688021 AGGAATAAGAATCACTGACGAGC 58.312 43.478 0.00 0.00 0.00 5.03
2264 2666 2.683867 ACGATATCTGTATCTAGCGGCC 59.316 50.000 0.34 0.00 35.57 6.13
2304 2740 4.584325 AGCAAAGTTCTTCCAGCAATTACA 59.416 37.500 0.00 0.00 0.00 2.41
2312 2748 6.244552 TCTTCCAGCAATTACAGATCATCT 57.755 37.500 0.00 0.00 0.00 2.90
2363 3141 6.267471 ACAATTCTTCCAGCAAAGTTCCATTA 59.733 34.615 0.00 0.00 0.00 1.90
2476 3259 1.065126 CCAAACAAAGTGGGGGCAAAA 60.065 47.619 0.00 0.00 32.03 2.44
2478 3261 3.181450 CCAAACAAAGTGGGGGCAAAATA 60.181 43.478 0.00 0.00 32.03 1.40
2479 3262 3.762407 AACAAAGTGGGGGCAAAATAC 57.238 42.857 0.00 0.00 0.00 1.89
2480 3263 2.970987 ACAAAGTGGGGGCAAAATACT 58.029 42.857 0.00 0.00 0.00 2.12
2481 3264 2.897326 ACAAAGTGGGGGCAAAATACTC 59.103 45.455 0.00 0.00 0.00 2.59
2484 3267 3.252554 AGTGGGGGCAAAATACTCAAA 57.747 42.857 0.00 0.00 0.00 2.69
2485 3268 2.897326 AGTGGGGGCAAAATACTCAAAC 59.103 45.455 0.00 0.00 0.00 2.93
2486 3269 2.630580 GTGGGGGCAAAATACTCAAACA 59.369 45.455 0.00 0.00 0.00 2.83
2487 3270 2.630580 TGGGGGCAAAATACTCAAACAC 59.369 45.455 0.00 0.00 0.00 3.32
2500 3283 4.968259 ACTCAAACACATACTGCCAACTA 58.032 39.130 0.00 0.00 0.00 2.24
2507 3290 3.000727 ACATACTGCCAACTAAACTCGC 58.999 45.455 0.00 0.00 0.00 5.03
2578 3361 0.110486 GTTGACCCTGCCAGGAGAAA 59.890 55.000 13.74 0.00 37.67 2.52
2589 3372 0.539051 CAGGAGAAAGTCAGCGGGAT 59.461 55.000 0.00 0.00 0.00 3.85
2590 3373 0.539051 AGGAGAAAGTCAGCGGGATG 59.461 55.000 0.00 0.00 0.00 3.51
2603 3386 1.644786 CGGGATGTTTCTGCCGTTCC 61.645 60.000 0.00 0.00 0.00 3.62
2611 3394 3.007506 TGTTTCTGCCGTTCCAAGATAGA 59.992 43.478 0.00 0.00 0.00 1.98
2612 3395 3.526931 TTCTGCCGTTCCAAGATAGAG 57.473 47.619 0.00 0.00 0.00 2.43
2613 3396 2.457598 TCTGCCGTTCCAAGATAGAGT 58.542 47.619 0.00 0.00 0.00 3.24
2614 3397 3.628008 TCTGCCGTTCCAAGATAGAGTA 58.372 45.455 0.00 0.00 0.00 2.59
2620 3405 3.310193 GTTCCAAGATAGAGTAGGCCCT 58.690 50.000 0.00 0.00 0.00 5.19
2627 3412 1.952621 TAGAGTAGGCCCTTGTTGCT 58.047 50.000 0.00 0.00 0.00 3.91
2655 3440 1.917273 TTGCGTATGGAAGTAGCGTC 58.083 50.000 0.00 0.00 0.00 5.19
2690 3475 2.559840 GTCGCGACGTGAAGGAGA 59.440 61.111 25.19 0.00 0.00 3.71
2691 3476 1.512310 GTCGCGACGTGAAGGAGAG 60.512 63.158 25.19 0.00 0.00 3.20
2692 3477 2.202492 CGCGACGTGAAGGAGAGG 60.202 66.667 0.00 0.00 0.00 3.69
2693 3478 2.687805 CGCGACGTGAAGGAGAGGA 61.688 63.158 0.00 0.00 0.00 3.71
2694 3479 1.137825 GCGACGTGAAGGAGAGGAG 59.862 63.158 0.00 0.00 0.00 3.69
2695 3480 1.306642 GCGACGTGAAGGAGAGGAGA 61.307 60.000 0.00 0.00 0.00 3.71
2696 3481 0.730265 CGACGTGAAGGAGAGGAGAG 59.270 60.000 0.00 0.00 0.00 3.20
2697 3482 1.099689 GACGTGAAGGAGAGGAGAGG 58.900 60.000 0.00 0.00 0.00 3.69
2698 3483 0.699399 ACGTGAAGGAGAGGAGAGGA 59.301 55.000 0.00 0.00 0.00 3.71
2699 3484 1.340600 ACGTGAAGGAGAGGAGAGGAG 60.341 57.143 0.00 0.00 0.00 3.69
2700 3485 1.065053 CGTGAAGGAGAGGAGAGGAGA 60.065 57.143 0.00 0.00 0.00 3.71
2712 3497 1.487558 GAGAGGAGAGGAGGAGTACGT 59.512 57.143 0.00 0.00 0.00 3.57
2749 3974 0.592247 CCTCAGCAAACGTGTTGTGC 60.592 55.000 10.65 8.43 37.27 4.57
2785 4010 4.166011 GGCGTGCCTCGTCAATGC 62.166 66.667 2.98 0.00 44.22 3.56
2786 4011 4.166011 GCGTGCCTCGTCAATGCC 62.166 66.667 0.83 0.00 42.13 4.40
2787 4012 2.741985 CGTGCCTCGTCAATGCCA 60.742 61.111 0.00 0.00 34.52 4.92
2788 4013 2.324330 CGTGCCTCGTCAATGCCAA 61.324 57.895 0.00 0.00 34.52 4.52
2789 4014 1.647545 CGTGCCTCGTCAATGCCAAT 61.648 55.000 0.00 0.00 34.52 3.16
2878 4114 1.524008 GAAAAAGGAGTGGCCCGGTG 61.524 60.000 0.00 0.00 37.37 4.94
2990 4226 1.983605 CGTAGCCCTCATTTATACGCG 59.016 52.381 3.53 3.53 33.69 6.01
2991 4227 1.725164 GTAGCCCTCATTTATACGCGC 59.275 52.381 5.73 0.00 0.00 6.86
2992 4228 0.105964 AGCCCTCATTTATACGCGCA 59.894 50.000 5.73 0.00 0.00 6.09
2993 4229 1.156736 GCCCTCATTTATACGCGCAT 58.843 50.000 5.73 0.00 0.00 4.73
2994 4230 2.028476 AGCCCTCATTTATACGCGCATA 60.028 45.455 5.73 0.00 0.00 3.14
2995 4231 2.093783 GCCCTCATTTATACGCGCATAC 59.906 50.000 5.73 0.00 0.00 2.39
2996 4232 2.344441 CCCTCATTTATACGCGCATACG 59.656 50.000 5.73 0.00 44.07 3.06
3008 4244 2.941453 CGCATACGCTCACCCTATAT 57.059 50.000 0.00 0.00 35.30 0.86
3009 4245 2.530177 CGCATACGCTCACCCTATATG 58.470 52.381 0.00 0.00 35.30 1.78
3010 4246 2.163613 CGCATACGCTCACCCTATATGA 59.836 50.000 0.00 0.00 35.30 2.15
3011 4247 3.366985 CGCATACGCTCACCCTATATGAA 60.367 47.826 0.00 0.00 35.30 2.57
3012 4248 3.927142 GCATACGCTCACCCTATATGAAC 59.073 47.826 0.00 0.00 34.30 3.18
3013 4249 2.795175 ACGCTCACCCTATATGAACG 57.205 50.000 0.00 0.00 40.58 3.95
3014 4250 1.269621 ACGCTCACCCTATATGAACGC 60.270 52.381 0.00 0.00 38.83 4.84
3015 4251 1.269569 CGCTCACCCTATATGAACGCA 60.270 52.381 0.00 0.00 29.90 5.24
3016 4252 2.135933 GCTCACCCTATATGAACGCAC 58.864 52.381 0.00 0.00 0.00 5.34
3017 4253 2.394708 CTCACCCTATATGAACGCACG 58.605 52.381 0.00 0.00 0.00 5.34
3018 4254 0.859232 CACCCTATATGAACGCACGC 59.141 55.000 0.00 0.00 0.00 5.34
3019 4255 0.462375 ACCCTATATGAACGCACGCA 59.538 50.000 0.00 0.00 0.00 5.24
3020 4256 0.859232 CCCTATATGAACGCACGCAC 59.141 55.000 0.00 0.00 0.00 5.34
3021 4257 0.502695 CCTATATGAACGCACGCACG 59.497 55.000 0.00 0.00 39.50 5.34
3022 4258 0.111704 CTATATGAACGCACGCACGC 60.112 55.000 0.00 0.00 36.19 5.34
3023 4259 0.802607 TATATGAACGCACGCACGCA 60.803 50.000 0.00 0.00 36.19 5.24
3024 4260 2.291508 ATATGAACGCACGCACGCAC 62.292 55.000 0.00 0.00 36.19 5.34
3030 4266 2.733218 GCACGCACGCACACTCTA 60.733 61.111 0.00 0.00 0.00 2.43
3031 4267 2.094659 GCACGCACGCACACTCTAT 61.095 57.895 0.00 0.00 0.00 1.98
3032 4268 1.991430 CACGCACGCACACTCTATC 59.009 57.895 0.00 0.00 0.00 2.08
3033 4269 1.153823 ACGCACGCACACTCTATCC 60.154 57.895 0.00 0.00 0.00 2.59
3034 4270 1.139734 CGCACGCACACTCTATCCT 59.860 57.895 0.00 0.00 0.00 3.24
3035 4271 0.458543 CGCACGCACACTCTATCCTT 60.459 55.000 0.00 0.00 0.00 3.36
3036 4272 1.202256 CGCACGCACACTCTATCCTTA 60.202 52.381 0.00 0.00 0.00 2.69
3037 4273 2.543861 CGCACGCACACTCTATCCTTAT 60.544 50.000 0.00 0.00 0.00 1.73
3038 4274 2.797156 GCACGCACACTCTATCCTTATG 59.203 50.000 0.00 0.00 0.00 1.90
3039 4275 3.738281 GCACGCACACTCTATCCTTATGT 60.738 47.826 0.00 0.00 0.00 2.29
3040 4276 3.798878 CACGCACACTCTATCCTTATGTG 59.201 47.826 0.00 0.00 42.83 3.21
3045 4281 5.851720 CACACTCTATCCTTATGTGCATCT 58.148 41.667 0.00 0.00 34.76 2.90
3046 4282 5.925397 CACACTCTATCCTTATGTGCATCTC 59.075 44.000 0.00 0.00 34.76 2.75
3047 4283 5.011533 ACACTCTATCCTTATGTGCATCTCC 59.988 44.000 0.00 0.00 32.49 3.71
3048 4284 4.219507 ACTCTATCCTTATGTGCATCTCCG 59.780 45.833 0.00 0.00 0.00 4.63
3049 4285 4.407365 TCTATCCTTATGTGCATCTCCGA 58.593 43.478 0.00 0.00 0.00 4.55
3050 4286 3.674528 ATCCTTATGTGCATCTCCGAG 57.325 47.619 0.00 0.00 0.00 4.63
3051 4287 2.666317 TCCTTATGTGCATCTCCGAGA 58.334 47.619 0.00 0.00 0.00 4.04
3052 4288 2.625314 TCCTTATGTGCATCTCCGAGAG 59.375 50.000 4.07 0.00 0.00 3.20
3053 4289 2.625314 CCTTATGTGCATCTCCGAGAGA 59.375 50.000 4.07 6.14 43.20 3.10
3054 4290 3.551863 CCTTATGTGCATCTCCGAGAGAC 60.552 52.174 4.07 1.75 41.76 3.36
3055 4291 1.774110 ATGTGCATCTCCGAGAGACT 58.226 50.000 4.07 0.00 41.76 3.24
3056 4292 0.813821 TGTGCATCTCCGAGAGACTG 59.186 55.000 4.07 0.00 41.76 3.51
3057 4293 1.098869 GTGCATCTCCGAGAGACTGA 58.901 55.000 4.07 0.00 41.76 3.41
3058 4294 1.065401 GTGCATCTCCGAGAGACTGAG 59.935 57.143 4.07 0.00 41.76 3.35
3059 4295 1.340502 TGCATCTCCGAGAGACTGAGT 60.341 52.381 4.07 0.00 41.76 3.41
3060 4296 1.333619 GCATCTCCGAGAGACTGAGTC 59.666 57.143 3.98 3.98 41.76 3.36
3061 4297 1.597195 CATCTCCGAGAGACTGAGTCG 59.403 57.143 6.99 0.00 41.76 4.18
3063 4299 2.795297 CCGAGAGACTGAGTCGGC 59.205 66.667 6.99 3.72 46.18 5.54
3064 4300 2.041115 CCGAGAGACTGAGTCGGCA 61.041 63.158 6.99 0.00 46.18 5.69
3065 4301 1.380403 CCGAGAGACTGAGTCGGCAT 61.380 60.000 6.99 0.00 46.18 4.40
3066 4302 1.300481 CGAGAGACTGAGTCGGCATA 58.700 55.000 6.99 0.00 37.67 3.14
3067 4303 1.876799 CGAGAGACTGAGTCGGCATAT 59.123 52.381 6.99 0.00 37.67 1.78
3068 4304 2.095969 CGAGAGACTGAGTCGGCATATC 60.096 54.545 6.99 0.00 37.67 1.63
3069 4305 2.881513 GAGAGACTGAGTCGGCATATCA 59.118 50.000 6.99 0.00 37.67 2.15
3070 4306 3.495331 AGAGACTGAGTCGGCATATCAT 58.505 45.455 6.99 0.00 37.67 2.45
3071 4307 3.505680 AGAGACTGAGTCGGCATATCATC 59.494 47.826 6.99 0.00 37.67 2.92
3072 4308 3.495331 AGACTGAGTCGGCATATCATCT 58.505 45.455 6.99 0.00 37.67 2.90
3073 4309 3.894427 AGACTGAGTCGGCATATCATCTT 59.106 43.478 6.99 0.00 37.67 2.40
3074 4310 3.986572 GACTGAGTCGGCATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
3075 4311 3.638627 ACTGAGTCGGCATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
3076 4312 4.236147 CTGAGTCGGCATATCATCTTGAG 58.764 47.826 0.00 0.00 0.00 3.02
3077 4313 3.891366 TGAGTCGGCATATCATCTTGAGA 59.109 43.478 0.00 0.00 0.00 3.27
3078 4314 4.525874 TGAGTCGGCATATCATCTTGAGAT 59.474 41.667 0.00 0.00 34.56 2.75
3079 4315 5.011431 TGAGTCGGCATATCATCTTGAGATT 59.989 40.000 0.00 0.00 31.21 2.40
3080 4316 5.862845 AGTCGGCATATCATCTTGAGATTT 58.137 37.500 0.00 0.00 31.21 2.17
3081 4317 6.294473 AGTCGGCATATCATCTTGAGATTTT 58.706 36.000 0.00 0.00 31.21 1.82
3082 4318 7.445121 AGTCGGCATATCATCTTGAGATTTTA 58.555 34.615 0.00 0.00 31.21 1.52
3083 4319 7.386299 AGTCGGCATATCATCTTGAGATTTTAC 59.614 37.037 0.00 0.00 31.21 2.01
3084 4320 6.366061 TCGGCATATCATCTTGAGATTTTACG 59.634 38.462 0.00 0.00 31.21 3.18
3085 4321 6.366061 CGGCATATCATCTTGAGATTTTACGA 59.634 38.462 0.00 0.00 31.21 3.43
3086 4322 7.411264 CGGCATATCATCTTGAGATTTTACGAG 60.411 40.741 0.00 0.00 31.21 4.18
3087 4323 7.148507 GGCATATCATCTTGAGATTTTACGAGG 60.149 40.741 0.00 0.00 31.21 4.63
3088 4324 7.386299 GCATATCATCTTGAGATTTTACGAGGT 59.614 37.037 0.00 0.00 31.21 3.85
3089 4325 8.920665 CATATCATCTTGAGATTTTACGAGGTC 58.079 37.037 0.00 0.00 31.21 3.85
3090 4326 6.280855 TCATCTTGAGATTTTACGAGGTCA 57.719 37.500 0.00 0.00 31.21 4.02
3091 4327 6.100004 TCATCTTGAGATTTTACGAGGTCAC 58.900 40.000 0.00 0.00 31.21 3.67
3092 4328 4.817517 TCTTGAGATTTTACGAGGTCACC 58.182 43.478 0.00 0.00 0.00 4.02
3093 4329 3.226346 TGAGATTTTACGAGGTCACCG 57.774 47.619 0.00 0.00 0.00 4.94
3094 4330 2.559668 TGAGATTTTACGAGGTCACCGT 59.440 45.455 0.00 0.00 43.26 4.83
3095 4331 3.758023 TGAGATTTTACGAGGTCACCGTA 59.242 43.478 0.00 0.00 40.95 4.02
3096 4332 4.142534 TGAGATTTTACGAGGTCACCGTAG 60.143 45.833 0.00 0.00 42.42 3.51
3097 4333 4.012374 AGATTTTACGAGGTCACCGTAGA 58.988 43.478 0.00 0.00 42.42 2.59
3098 4334 4.643784 AGATTTTACGAGGTCACCGTAGAT 59.356 41.667 0.00 0.00 42.42 1.98
3099 4335 3.770263 TTTACGAGGTCACCGTAGATG 57.230 47.619 0.00 0.00 42.42 2.90
3100 4336 2.408271 TACGAGGTCACCGTAGATGT 57.592 50.000 0.00 0.00 40.95 3.06
3101 4337 1.093159 ACGAGGTCACCGTAGATGTC 58.907 55.000 0.00 0.00 38.61 3.06
3102 4338 1.339824 ACGAGGTCACCGTAGATGTCT 60.340 52.381 0.00 0.00 38.61 3.41
3103 4339 1.331138 CGAGGTCACCGTAGATGTCTC 59.669 57.143 0.00 0.00 0.00 3.36
3104 4340 1.331138 GAGGTCACCGTAGATGTCTCG 59.669 57.143 0.00 0.00 0.00 4.04
3105 4341 1.093159 GGTCACCGTAGATGTCTCGT 58.907 55.000 0.00 0.00 0.00 4.18
3106 4342 2.093288 AGGTCACCGTAGATGTCTCGTA 60.093 50.000 0.00 0.00 0.00 3.43
3107 4343 2.287373 GGTCACCGTAGATGTCTCGTAG 59.713 54.545 0.00 0.00 0.00 3.51
3108 4344 2.935201 GTCACCGTAGATGTCTCGTAGT 59.065 50.000 0.00 0.00 0.00 2.73
3109 4345 3.001127 GTCACCGTAGATGTCTCGTAGTC 59.999 52.174 0.00 0.00 0.00 2.59
3110 4346 2.033917 CACCGTAGATGTCTCGTAGTCG 60.034 54.545 0.00 0.00 38.55 4.18
3111 4347 2.159184 ACCGTAGATGTCTCGTAGTCGA 60.159 50.000 0.00 0.00 44.12 4.20
3112 4348 2.218302 CCGTAGATGTCTCGTAGTCGAC 59.782 54.545 7.70 7.70 41.35 4.20
3123 4359 2.471862 GTAGTCGACGGGAACATCTC 57.528 55.000 10.46 0.00 0.00 2.75
3124 4360 1.065251 GTAGTCGACGGGAACATCTCC 59.935 57.143 10.46 0.00 44.54 3.71
3125 4361 0.323542 AGTCGACGGGAACATCTCCT 60.324 55.000 10.46 0.00 44.68 3.69
3126 4362 0.100861 GTCGACGGGAACATCTCCTC 59.899 60.000 0.00 0.00 44.68 3.71
3127 4363 1.035932 TCGACGGGAACATCTCCTCC 61.036 60.000 0.00 0.00 44.68 4.30
3128 4364 1.823976 GACGGGAACATCTCCTCCC 59.176 63.158 0.00 0.00 46.97 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.718276 TGGGTGGGTATAGAAGGTTTCTAC 59.282 45.833 0.94 0.00 44.43 2.59
208 212 1.001641 AGGAGGCTGTGTTGATGCC 60.002 57.895 0.00 0.00 46.42 4.40
212 216 3.059982 CGGAGGAGGCTGTGTTGA 58.940 61.111 0.00 0.00 0.00 3.18
277 281 2.093075 TCTCCCACTACGTCGAGATTCT 60.093 50.000 0.00 0.00 0.00 2.40
328 332 3.578716 TCGAAAACTCCTGTCCATCTCTT 59.421 43.478 0.00 0.00 0.00 2.85
430 436 1.541233 CCTAAACCGGCCATAGCTCAG 60.541 57.143 0.00 0.00 39.73 3.35
470 476 1.898863 ACATCTAACTCCCATGGCCT 58.101 50.000 6.09 0.00 0.00 5.19
484 490 3.650281 TGATATGTGGTGCCAACATCT 57.350 42.857 8.71 2.27 0.00 2.90
492 498 7.986085 AAATAAGTCCTATGATATGTGGTGC 57.014 36.000 0.00 0.00 0.00 5.01
548 554 9.715121 GGTATGAAATTGCATCCATGAATAATT 57.285 29.630 0.89 0.00 0.00 1.40
549 555 8.316214 GGGTATGAAATTGCATCCATGAATAAT 58.684 33.333 0.89 0.00 0.00 1.28
554 560 4.544683 TGGGTATGAAATTGCATCCATGA 58.455 39.130 0.89 0.00 0.00 3.07
578 584 2.650322 CGCAAAACATATGGGTAGGGT 58.350 47.619 7.80 0.00 0.00 4.34
591 597 0.102300 GGTATCCATGCCCGCAAAAC 59.898 55.000 0.00 0.00 0.00 2.43
658 665 3.366679 CCGCGGGTACACTATTCGAATAT 60.367 47.826 20.10 6.65 0.00 1.28
684 691 0.609681 GTTTTGCCCATGGGTACGGA 60.610 55.000 31.58 10.34 37.65 4.69
687 694 2.291346 ACTAGGTTTTGCCCATGGGTAC 60.291 50.000 31.58 21.98 38.26 3.34
704 711 1.153349 GCTCCTGGGCCGAAACTAG 60.153 63.158 0.00 0.00 0.00 2.57
705 712 2.987125 GCTCCTGGGCCGAAACTA 59.013 61.111 0.00 0.00 0.00 2.24
706 713 4.394712 CGCTCCTGGGCCGAAACT 62.395 66.667 0.00 0.00 0.00 2.66
739 746 2.031012 CTGCAGGTGAGCAACGGA 59.969 61.111 5.57 0.00 45.13 4.69
872 899 3.190327 GCCTGGCTTTTGTTTTGTTTTGT 59.810 39.130 12.43 0.00 0.00 2.83
1086 1458 4.150454 AGGCGGAGGAGGAGGAGG 62.150 72.222 0.00 0.00 0.00 4.30
1087 1459 2.520741 GAGGCGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1151 1523 3.507009 GTCGGAGTCGGAGTCGGG 61.507 72.222 17.21 8.00 36.95 5.14
1477 1861 1.445095 GTCGATGATGAGGCTGCCT 59.555 57.895 23.64 23.64 36.03 4.75
1851 2238 1.678123 CCCTCCACTTCTCGTACTCGA 60.678 57.143 0.00 0.00 44.12 4.04
1935 2328 6.760298 TGATCTCTTTAGTCATCATTCAGCAC 59.240 38.462 0.00 0.00 0.00 4.40
2017 2410 7.703298 TGATCAAAAAGAATTTCTGCAACAG 57.297 32.000 0.00 0.00 37.28 3.16
2049 2442 4.271696 TCATATCGATTTCATCCCGCTT 57.728 40.909 1.71 0.00 0.00 4.68
2172 2574 4.344679 TGCATTCCATTGGAAAAGAACAGT 59.655 37.500 21.52 0.20 45.41 3.55
2224 2626 1.536073 TTCAGCGACAGAGTGGAGGG 61.536 60.000 0.00 0.00 0.00 4.30
2264 2666 2.170166 TGCTGAATTTTGGGTGGCTAG 58.830 47.619 0.00 0.00 0.00 3.42
2304 2740 5.768980 TGTTTCTCCTTCCAAGATGATCT 57.231 39.130 0.00 0.00 0.00 2.75
2312 2748 5.068987 CAGTTTGGATTGTTTCTCCTTCCAA 59.931 40.000 0.00 0.00 42.98 3.53
2476 3259 5.560724 AGTTGGCAGTATGTGTTTGAGTAT 58.439 37.500 0.00 0.00 39.31 2.12
2478 3261 3.820557 AGTTGGCAGTATGTGTTTGAGT 58.179 40.909 0.00 0.00 39.31 3.41
2479 3262 5.940192 TTAGTTGGCAGTATGTGTTTGAG 57.060 39.130 0.00 0.00 39.31 3.02
2480 3263 5.825679 AGTTTAGTTGGCAGTATGTGTTTGA 59.174 36.000 0.00 0.00 39.31 2.69
2481 3264 6.072112 AGTTTAGTTGGCAGTATGTGTTTG 57.928 37.500 0.00 0.00 39.31 2.93
2484 3267 3.994392 CGAGTTTAGTTGGCAGTATGTGT 59.006 43.478 0.00 0.00 39.31 3.72
2485 3268 3.181520 GCGAGTTTAGTTGGCAGTATGTG 60.182 47.826 0.00 0.00 39.31 3.21
2486 3269 3.000727 GCGAGTTTAGTTGGCAGTATGT 58.999 45.455 0.00 0.00 39.31 2.29
2487 3270 2.029244 CGCGAGTTTAGTTGGCAGTATG 59.971 50.000 0.00 0.00 40.87 2.39
2500 3283 1.003866 GAGCAAGAAACACGCGAGTTT 60.004 47.619 30.09 30.09 46.40 2.66
2507 3290 0.383491 CGTGCAGAGCAAGAAACACG 60.383 55.000 0.00 0.00 41.47 4.49
2549 3332 2.032071 GGGTCAACACTCGGGTGG 59.968 66.667 21.67 2.36 46.85 4.61
2578 3361 0.674895 GCAGAAACATCCCGCTGACT 60.675 55.000 0.00 0.00 0.00 3.41
2589 3372 2.270352 ATCTTGGAACGGCAGAAACA 57.730 45.000 0.00 0.00 0.00 2.83
2590 3373 3.596214 TCTATCTTGGAACGGCAGAAAC 58.404 45.455 0.00 0.00 0.00 2.78
2603 3386 4.446371 CAACAAGGGCCTACTCTATCTTG 58.554 47.826 6.41 7.65 37.98 3.02
2611 3394 1.685820 GGAGCAACAAGGGCCTACT 59.314 57.895 6.41 0.00 0.00 2.57
2612 3395 1.745489 CGGAGCAACAAGGGCCTAC 60.745 63.158 6.41 0.00 0.00 3.18
2613 3396 2.668632 CGGAGCAACAAGGGCCTA 59.331 61.111 6.41 0.00 0.00 3.93
2688 3473 1.275002 ACTCCTCCTCTCCTCTCCTCT 60.275 57.143 0.00 0.00 0.00 3.69
2689 3474 1.222567 ACTCCTCCTCTCCTCTCCTC 58.777 60.000 0.00 0.00 0.00 3.71
2690 3475 2.132686 GTACTCCTCCTCTCCTCTCCT 58.867 57.143 0.00 0.00 0.00 3.69
2691 3476 1.202722 CGTACTCCTCCTCTCCTCTCC 60.203 61.905 0.00 0.00 0.00 3.71
2692 3477 1.487558 ACGTACTCCTCCTCTCCTCTC 59.512 57.143 0.00 0.00 0.00 3.20
2693 3478 1.587066 ACGTACTCCTCCTCTCCTCT 58.413 55.000 0.00 0.00 0.00 3.69
2694 3479 2.807837 GCTACGTACTCCTCCTCTCCTC 60.808 59.091 0.00 0.00 0.00 3.71
2695 3480 1.141455 GCTACGTACTCCTCCTCTCCT 59.859 57.143 0.00 0.00 0.00 3.69
2696 3481 1.596603 GCTACGTACTCCTCCTCTCC 58.403 60.000 0.00 0.00 0.00 3.71
2697 3482 1.219646 CGCTACGTACTCCTCCTCTC 58.780 60.000 0.00 0.00 0.00 3.20
2698 3483 0.179051 CCGCTACGTACTCCTCCTCT 60.179 60.000 0.00 0.00 0.00 3.69
2699 3484 0.179062 TCCGCTACGTACTCCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
2700 3485 0.179051 CTCCGCTACGTACTCCTCCT 60.179 60.000 0.00 0.00 0.00 3.69
2730 3515 0.592247 GCACAACACGTTTGCTGAGG 60.592 55.000 9.44 0.00 33.26 3.86
2732 3517 0.523519 TTGCACAACACGTTTGCTGA 59.476 45.000 14.01 5.10 37.16 4.26
2772 3997 0.527113 CAATTGGCATTGACGAGGCA 59.473 50.000 1.13 0.00 42.35 4.75
2778 4003 1.079956 TGCGGCAATTGGCATTGAC 60.080 52.632 28.96 14.08 44.25 3.18
2908 4144 2.450476 ACAGATGCATTGGTTCCTTCC 58.550 47.619 0.00 0.00 0.00 3.46
2955 4191 4.455190 AGGGCTACGCGTTTGTATTAAAAA 59.545 37.500 20.78 0.00 0.00 1.94
2956 4192 4.002316 AGGGCTACGCGTTTGTATTAAAA 58.998 39.130 20.78 0.00 0.00 1.52
2957 4193 3.598299 AGGGCTACGCGTTTGTATTAAA 58.402 40.909 20.78 0.00 0.00 1.52
2958 4194 3.189285 GAGGGCTACGCGTTTGTATTAA 58.811 45.455 20.78 0.00 0.00 1.40
2959 4195 2.166050 TGAGGGCTACGCGTTTGTATTA 59.834 45.455 20.78 0.00 0.00 0.98
2960 4196 1.066716 TGAGGGCTACGCGTTTGTATT 60.067 47.619 20.78 0.00 0.00 1.89
2961 4197 0.533491 TGAGGGCTACGCGTTTGTAT 59.467 50.000 20.78 0.34 0.00 2.29
2962 4198 0.533491 ATGAGGGCTACGCGTTTGTA 59.467 50.000 20.78 0.00 0.00 2.41
2963 4199 0.321298 AATGAGGGCTACGCGTTTGT 60.321 50.000 20.78 0.00 0.00 2.83
2964 4200 0.802494 AAATGAGGGCTACGCGTTTG 59.198 50.000 20.78 12.65 36.84 2.93
2965 4201 2.389962 TAAATGAGGGCTACGCGTTT 57.610 45.000 20.78 4.40 40.49 3.60
2966 4202 2.614829 ATAAATGAGGGCTACGCGTT 57.385 45.000 20.78 0.00 0.00 4.84
2967 4203 2.606308 CGTATAAATGAGGGCTACGCGT 60.606 50.000 19.17 19.17 0.00 6.01
2968 4204 1.983605 CGTATAAATGAGGGCTACGCG 59.016 52.381 3.53 3.53 0.00 6.01
2970 4206 1.983605 CGCGTATAAATGAGGGCTACG 59.016 52.381 0.00 0.00 38.48 3.51
2971 4207 1.725164 GCGCGTATAAATGAGGGCTAC 59.275 52.381 8.43 0.00 39.10 3.58
2972 4208 1.341852 TGCGCGTATAAATGAGGGCTA 59.658 47.619 8.43 0.00 42.05 3.93
2973 4209 0.105964 TGCGCGTATAAATGAGGGCT 59.894 50.000 8.43 0.00 42.05 5.19
2974 4210 1.156736 ATGCGCGTATAAATGAGGGC 58.843 50.000 8.29 0.00 41.92 5.19
2975 4211 2.344441 CGTATGCGCGTATAAATGAGGG 59.656 50.000 18.63 0.00 0.00 4.30
2976 4212 3.618097 CGTATGCGCGTATAAATGAGG 57.382 47.619 18.63 0.36 0.00 3.86
2990 4226 3.868757 TCATATAGGGTGAGCGTATGC 57.131 47.619 7.07 0.00 43.24 3.14
2991 4227 4.166523 CGTTCATATAGGGTGAGCGTATG 58.833 47.826 7.07 1.55 42.72 2.39
2992 4228 4.436242 CGTTCATATAGGGTGAGCGTAT 57.564 45.455 2.35 2.35 42.72 3.06
2993 4229 3.909776 CGTTCATATAGGGTGAGCGTA 57.090 47.619 4.56 0.00 42.72 4.42
2994 4230 2.795175 CGTTCATATAGGGTGAGCGT 57.205 50.000 4.56 0.00 42.72 5.07
2996 4232 2.135933 GTGCGTTCATATAGGGTGAGC 58.864 52.381 0.00 0.00 0.00 4.26
2997 4233 2.394708 CGTGCGTTCATATAGGGTGAG 58.605 52.381 0.00 0.00 0.00 3.51
2998 4234 1.537348 GCGTGCGTTCATATAGGGTGA 60.537 52.381 0.00 0.00 0.00 4.02
2999 4235 0.859232 GCGTGCGTTCATATAGGGTG 59.141 55.000 0.00 0.00 0.00 4.61
3000 4236 0.462375 TGCGTGCGTTCATATAGGGT 59.538 50.000 0.00 0.00 0.00 4.34
3001 4237 0.859232 GTGCGTGCGTTCATATAGGG 59.141 55.000 0.00 0.00 0.00 3.53
3002 4238 0.502695 CGTGCGTGCGTTCATATAGG 59.497 55.000 0.00 0.00 0.00 2.57
3003 4239 0.111704 GCGTGCGTGCGTTCATATAG 60.112 55.000 3.11 0.00 0.00 1.31
3004 4240 0.802607 TGCGTGCGTGCGTTCATATA 60.803 50.000 3.11 0.00 37.81 0.86
3005 4241 2.097635 TGCGTGCGTGCGTTCATAT 61.098 52.632 3.11 0.00 37.81 1.78
3006 4242 2.735100 TGCGTGCGTGCGTTCATA 60.735 55.556 3.11 0.00 37.81 2.15
3007 4243 4.368808 GTGCGTGCGTGCGTTCAT 62.369 61.111 3.11 0.00 37.81 2.57
3013 4249 2.014093 GATAGAGTGTGCGTGCGTGC 62.014 60.000 0.00 0.00 0.00 5.34
3014 4250 1.413767 GGATAGAGTGTGCGTGCGTG 61.414 60.000 0.00 0.00 0.00 5.34
3015 4251 1.153823 GGATAGAGTGTGCGTGCGT 60.154 57.895 0.00 0.00 0.00 5.24
3016 4252 0.458543 AAGGATAGAGTGTGCGTGCG 60.459 55.000 0.00 0.00 0.00 5.34
3017 4253 2.579207 TAAGGATAGAGTGTGCGTGC 57.421 50.000 0.00 0.00 0.00 5.34
3018 4254 3.798878 CACATAAGGATAGAGTGTGCGTG 59.201 47.826 0.00 0.00 34.50 5.34
3019 4255 4.046938 CACATAAGGATAGAGTGTGCGT 57.953 45.455 0.00 0.00 34.50 5.24
3022 4258 5.851720 AGATGCACATAAGGATAGAGTGTG 58.148 41.667 0.00 0.00 42.19 3.82
3023 4259 5.011533 GGAGATGCACATAAGGATAGAGTGT 59.988 44.000 0.00 0.00 32.99 3.55
3024 4260 5.477510 GGAGATGCACATAAGGATAGAGTG 58.522 45.833 0.00 0.00 0.00 3.51
3025 4261 4.219507 CGGAGATGCACATAAGGATAGAGT 59.780 45.833 0.00 0.00 0.00 3.24
3026 4262 4.460731 TCGGAGATGCACATAAGGATAGAG 59.539 45.833 0.00 0.00 0.00 2.43
3027 4263 4.407365 TCGGAGATGCACATAAGGATAGA 58.593 43.478 0.00 0.00 0.00 1.98
3028 4264 4.460731 TCTCGGAGATGCACATAAGGATAG 59.539 45.833 2.97 0.00 33.89 2.08
3029 4265 4.407365 TCTCGGAGATGCACATAAGGATA 58.593 43.478 2.97 0.00 33.89 2.59
3030 4266 3.234353 TCTCGGAGATGCACATAAGGAT 58.766 45.455 2.97 0.00 33.89 3.24
3031 4267 2.625314 CTCTCGGAGATGCACATAAGGA 59.375 50.000 8.39 0.00 33.89 3.36
3032 4268 2.625314 TCTCTCGGAGATGCACATAAGG 59.375 50.000 8.39 0.00 33.35 2.69
3033 4269 3.317711 AGTCTCTCGGAGATGCACATAAG 59.682 47.826 8.39 0.00 40.98 1.73
3034 4270 3.067320 CAGTCTCTCGGAGATGCACATAA 59.933 47.826 8.39 0.00 40.98 1.90
3035 4271 2.620585 CAGTCTCTCGGAGATGCACATA 59.379 50.000 8.39 0.00 40.98 2.29
3036 4272 1.408340 CAGTCTCTCGGAGATGCACAT 59.592 52.381 8.39 0.00 40.98 3.21
3037 4273 0.813821 CAGTCTCTCGGAGATGCACA 59.186 55.000 8.39 0.00 40.98 4.57
3038 4274 1.065401 CTCAGTCTCTCGGAGATGCAC 59.935 57.143 8.39 6.04 40.98 4.57
3039 4275 1.340502 ACTCAGTCTCTCGGAGATGCA 60.341 52.381 8.39 0.00 40.98 3.96
3040 4276 1.333619 GACTCAGTCTCTCGGAGATGC 59.666 57.143 8.39 4.64 40.98 3.91
3041 4277 1.597195 CGACTCAGTCTCTCGGAGATG 59.403 57.143 8.39 4.48 40.98 2.90
3042 4278 1.948104 CGACTCAGTCTCTCGGAGAT 58.052 55.000 8.39 0.00 40.98 2.75
3043 4279 3.444751 CGACTCAGTCTCTCGGAGA 57.555 57.895 7.60 7.60 40.01 3.71
3047 4283 1.300481 TATGCCGACTCAGTCTCTCG 58.700 55.000 2.61 0.00 0.00 4.04
3048 4284 2.881513 TGATATGCCGACTCAGTCTCTC 59.118 50.000 2.61 0.00 0.00 3.20
3049 4285 2.937519 TGATATGCCGACTCAGTCTCT 58.062 47.619 2.61 0.00 0.00 3.10
3050 4286 3.505680 AGATGATATGCCGACTCAGTCTC 59.494 47.826 2.61 0.00 0.00 3.36
3051 4287 3.495331 AGATGATATGCCGACTCAGTCT 58.505 45.455 2.61 0.00 0.00 3.24
3052 4288 3.932545 AGATGATATGCCGACTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
3053 4289 3.638627 TCAAGATGATATGCCGACTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
3054 4290 4.022503 TCTCAAGATGATATGCCGACTCAG 60.023 45.833 0.00 0.00 0.00 3.35
3055 4291 3.891366 TCTCAAGATGATATGCCGACTCA 59.109 43.478 0.00 0.00 0.00 3.41
3056 4292 4.511617 TCTCAAGATGATATGCCGACTC 57.488 45.455 0.00 0.00 0.00 3.36
3057 4293 5.480642 AATCTCAAGATGATATGCCGACT 57.519 39.130 0.00 0.00 34.49 4.18
3058 4294 6.551385 AAAATCTCAAGATGATATGCCGAC 57.449 37.500 0.00 0.00 34.49 4.79
3059 4295 6.366061 CGTAAAATCTCAAGATGATATGCCGA 59.634 38.462 0.00 0.00 34.49 5.54
3060 4296 6.366061 TCGTAAAATCTCAAGATGATATGCCG 59.634 38.462 0.00 0.00 34.49 5.69
3061 4297 7.148507 CCTCGTAAAATCTCAAGATGATATGCC 60.149 40.741 0.00 0.00 34.49 4.40
3062 4298 7.386299 ACCTCGTAAAATCTCAAGATGATATGC 59.614 37.037 0.00 0.00 34.49 3.14
3063 4299 8.824159 ACCTCGTAAAATCTCAAGATGATATG 57.176 34.615 0.00 0.00 34.49 1.78
3064 4300 8.642432 TGACCTCGTAAAATCTCAAGATGATAT 58.358 33.333 0.00 0.00 34.49 1.63
3065 4301 7.921214 GTGACCTCGTAAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
3066 4302 6.758886 GTGACCTCGTAAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
3067 4303 6.100004 GTGACCTCGTAAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
3068 4304 5.292101 GGTGACCTCGTAAAATCTCAAGATG 59.708 44.000 0.00 0.00 34.49 2.90
3069 4305 5.420409 GGTGACCTCGTAAAATCTCAAGAT 58.580 41.667 0.00 0.00 36.07 2.40
3070 4306 4.617530 CGGTGACCTCGTAAAATCTCAAGA 60.618 45.833 0.00 0.00 0.00 3.02
3071 4307 3.612860 CGGTGACCTCGTAAAATCTCAAG 59.387 47.826 0.00 0.00 0.00 3.02
3072 4308 3.006110 ACGGTGACCTCGTAAAATCTCAA 59.994 43.478 0.00 0.00 39.22 3.02
3073 4309 2.559668 ACGGTGACCTCGTAAAATCTCA 59.440 45.455 0.00 0.00 39.22 3.27
3074 4310 3.227810 ACGGTGACCTCGTAAAATCTC 57.772 47.619 0.00 0.00 39.22 2.75
3075 4311 4.012374 TCTACGGTGACCTCGTAAAATCT 58.988 43.478 0.00 0.00 41.62 2.40
3076 4312 4.361451 TCTACGGTGACCTCGTAAAATC 57.639 45.455 0.00 0.00 41.62 2.17
3077 4313 4.159135 ACATCTACGGTGACCTCGTAAAAT 59.841 41.667 0.00 0.00 41.62 1.82
3078 4314 3.507233 ACATCTACGGTGACCTCGTAAAA 59.493 43.478 0.00 0.00 41.62 1.52
3079 4315 3.084039 ACATCTACGGTGACCTCGTAAA 58.916 45.455 0.00 0.00 41.62 2.01
3080 4316 2.679837 GACATCTACGGTGACCTCGTAA 59.320 50.000 0.00 0.00 41.62 3.18
3081 4317 2.093288 AGACATCTACGGTGACCTCGTA 60.093 50.000 0.00 0.00 41.38 3.43
3082 4318 1.093159 GACATCTACGGTGACCTCGT 58.907 55.000 0.00 0.00 43.64 4.18
3083 4319 1.331138 GAGACATCTACGGTGACCTCG 59.669 57.143 0.00 0.00 0.00 4.63
3084 4320 1.331138 CGAGACATCTACGGTGACCTC 59.669 57.143 0.00 0.00 0.00 3.85
3085 4321 1.339824 ACGAGACATCTACGGTGACCT 60.340 52.381 0.00 0.00 0.00 3.85
3086 4322 1.093159 ACGAGACATCTACGGTGACC 58.907 55.000 0.00 0.00 0.00 4.02
3087 4323 2.935201 ACTACGAGACATCTACGGTGAC 59.065 50.000 0.00 0.00 0.00 3.67
3088 4324 3.193263 GACTACGAGACATCTACGGTGA 58.807 50.000 0.00 0.00 0.00 4.02
3089 4325 2.033917 CGACTACGAGACATCTACGGTG 60.034 54.545 0.00 0.00 42.66 4.94
3090 4326 2.159184 TCGACTACGAGACATCTACGGT 60.159 50.000 0.00 0.00 43.81 4.83
3091 4327 2.467838 TCGACTACGAGACATCTACGG 58.532 52.381 0.00 0.00 43.81 4.02
3104 4340 1.065251 GGAGATGTTCCCGTCGACTAC 59.935 57.143 14.70 6.97 40.37 2.73
3105 4341 1.386533 GGAGATGTTCCCGTCGACTA 58.613 55.000 14.70 0.00 40.37 2.59
3106 4342 2.190756 GGAGATGTTCCCGTCGACT 58.809 57.895 14.70 0.00 40.37 4.18
3107 4343 4.808649 GGAGATGTTCCCGTCGAC 57.191 61.111 5.18 5.18 40.37 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.