Multiple sequence alignment - TraesCS6B01G318200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G318200 chr6B 100.000 4217 0 0 1 4217 566144279 566148495 0.000000e+00 7788.0
1 TraesCS6B01G318200 chr6B 94.624 93 5 0 1070 1162 179236346 179236254 1.220000e-30 145.0
2 TraesCS6B01G318200 chr6B 93.548 93 6 0 1070 1162 179188727 179188635 5.690000e-29 139.0
3 TraesCS6B01G318200 chr6D 97.374 2475 59 5 1157 3627 380147051 380144579 0.000000e+00 4205.0
4 TraesCS6B01G318200 chr6D 97.961 1079 22 0 1 1079 380148124 380147046 0.000000e+00 1871.0
5 TraesCS6B01G318200 chr6D 95.556 90 4 0 1071 1160 380137069 380136980 1.220000e-30 145.0
6 TraesCS6B01G318200 chr6D 93.548 93 6 0 1071 1163 114156795 114156703 5.690000e-29 139.0
7 TraesCS6B01G318200 chr6D 95.238 84 4 0 4134 4217 380143525 380143442 2.650000e-27 134.0
8 TraesCS6B01G318200 chr6A 96.043 1971 70 6 1631 3598 520713218 520715183 0.000000e+00 3201.0
9 TraesCS6B01G318200 chr6A 98.050 1077 21 0 1 1077 520711701 520712777 0.000000e+00 1873.0
10 TraesCS6B01G318200 chr6A 97.556 450 9 2 1157 1605 520712774 520713222 0.000000e+00 769.0
11 TraesCS6B01G318200 chr6A 87.248 149 10 4 4078 4217 520715438 520715586 1.210000e-35 161.0
12 TraesCS6B01G318200 chr6A 100.000 42 0 0 4134 4175 520715473 520715514 1.260000e-10 78.7
13 TraesCS6B01G318200 chr6A 81.707 82 9 6 3697 3773 420103135 420103215 3.520000e-06 63.9
14 TraesCS6B01G318200 chr6A 100.000 30 0 0 4146 4175 520715455 520715484 5.890000e-04 56.5
15 TraesCS6B01G318200 chr1D 93.069 101 5 2 1062 1160 241268562 241268662 3.400000e-31 147.0
16 TraesCS6B01G318200 chr2D 95.556 90 4 0 1075 1164 382456025 382455936 1.220000e-30 145.0
17 TraesCS6B01G318200 chr2B 95.506 89 4 0 1073 1161 24223433 24223521 4.400000e-30 143.0
18 TraesCS6B01G318200 chr2B 82.278 79 11 3 3704 3779 139403019 139402941 9.790000e-07 65.8
19 TraesCS6B01G318200 chr1B 93.548 93 6 0 1070 1162 628049808 628049900 5.690000e-29 139.0
20 TraesCS6B01G318200 chr1B 86.441 59 7 1 3711 3769 688757619 688757562 3.520000e-06 63.9
21 TraesCS6B01G318200 chr7D 91.753 97 8 0 1074 1170 167548418 167548514 7.350000e-28 135.0
22 TraesCS6B01G318200 chr7D 83.077 65 6 5 1041 1102 53565917 53565979 2.000000e-03 54.7
23 TraesCS6B01G318200 chr5A 91.228 57 2 3 3716 3769 486754781 486754725 1.630000e-09 75.0
24 TraesCS6B01G318200 chr4B 92.000 50 3 1 3725 3773 505090105 505090056 7.570000e-08 69.4
25 TraesCS6B01G318200 chr4B 83.333 78 7 6 3697 3769 579333205 579333129 2.720000e-07 67.6
26 TraesCS6B01G318200 chr4A 85.294 68 8 2 3704 3769 490587327 490587260 7.570000e-08 69.4
27 TraesCS6B01G318200 chr3B 92.000 50 3 1 3725 3773 80691969 80691920 7.570000e-08 69.4
28 TraesCS6B01G318200 chr5D 86.885 61 4 4 3722 3780 509236418 509236360 9.790000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G318200 chr6B 566144279 566148495 4216 False 7788.0 7788 100.000000 1 4217 1 chr6B.!!$F1 4216
1 TraesCS6B01G318200 chr6D 380143442 380148124 4682 True 2070.0 4205 96.857667 1 4217 3 chr6D.!!$R3 4216
2 TraesCS6B01G318200 chr6A 520711701 520715586 3885 False 1023.2 3201 96.482833 1 4217 6 chr6A.!!$F2 4216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 1.993653 CCAAGAGGACTCCATGGCA 59.006 57.895 6.96 0.00 36.89 4.92 F
1786 1791 1.528129 GGTTTTGAGACTCAGGCCTG 58.472 55.000 27.87 27.87 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 1969 1.207488 TGCTGCCTTATGGACCACCT 61.207 55.0 0.0 0.0 37.04 4.00 R
3687 3733 0.036952 AGATCACAACAGCTCACCGG 60.037 55.0 0.0 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.123804 GCAGTCATGTTGATAGTACCCG 58.876 50.000 0.00 0.00 0.00 5.28
86 87 1.993653 CCAAGAGGACTCCATGGCA 59.006 57.895 6.96 0.00 36.89 4.92
189 190 3.876914 CAGTGTCAACCTTGCTAAAGACA 59.123 43.478 0.00 0.00 35.19 3.41
404 405 2.865119 TGTCCATGAATGCAGTGACT 57.135 45.000 0.00 0.00 32.62 3.41
530 531 3.679935 CTCTCTCCCAGAGGTCACA 57.320 57.895 0.69 0.00 44.75 3.58
542 543 5.491070 CCAGAGGTCACAGAATATGTTGAA 58.509 41.667 0.00 0.00 41.41 2.69
652 653 2.292845 GAGCCATAGAGGAGCATTTTGC 59.707 50.000 0.00 0.00 41.22 3.68
1051 1052 6.182627 TCTTGTCCCTACGTAAACTCATCTA 58.817 40.000 0.00 0.00 0.00 1.98
1080 1081 9.765795 ATTTAGAATAGCATACACAAGTACTCC 57.234 33.333 0.00 0.00 31.96 3.85
1081 1082 6.163135 AGAATAGCATACACAAGTACTCCC 57.837 41.667 0.00 0.00 31.96 4.30
1082 1083 5.900123 AGAATAGCATACACAAGTACTCCCT 59.100 40.000 0.00 0.00 31.96 4.20
1083 1084 5.793030 ATAGCATACACAAGTACTCCCTC 57.207 43.478 0.00 0.00 31.96 4.30
1084 1085 3.714144 AGCATACACAAGTACTCCCTCT 58.286 45.455 0.00 0.00 31.96 3.69
1085 1086 3.449018 AGCATACACAAGTACTCCCTCTG 59.551 47.826 0.00 0.00 31.96 3.35
1086 1087 3.195825 GCATACACAAGTACTCCCTCTGT 59.804 47.826 0.00 0.00 31.96 3.41
1087 1088 4.401519 GCATACACAAGTACTCCCTCTGTA 59.598 45.833 0.00 0.00 31.96 2.74
1088 1089 5.105473 GCATACACAAGTACTCCCTCTGTAA 60.105 44.000 0.00 0.00 31.96 2.41
1089 1090 6.573680 GCATACACAAGTACTCCCTCTGTAAA 60.574 42.308 0.00 0.00 31.96 2.01
1090 1091 5.470047 ACACAAGTACTCCCTCTGTAAAG 57.530 43.478 0.00 0.00 0.00 1.85
1091 1092 5.145564 ACACAAGTACTCCCTCTGTAAAGA 58.854 41.667 0.00 0.00 0.00 2.52
1092 1093 5.601313 ACACAAGTACTCCCTCTGTAAAGAA 59.399 40.000 0.00 0.00 0.00 2.52
1093 1094 6.099269 ACACAAGTACTCCCTCTGTAAAGAAA 59.901 38.462 0.00 0.00 0.00 2.52
1094 1095 7.162082 CACAAGTACTCCCTCTGTAAAGAAAT 58.838 38.462 0.00 0.00 0.00 2.17
1095 1096 8.311836 CACAAGTACTCCCTCTGTAAAGAAATA 58.688 37.037 0.00 0.00 0.00 1.40
1096 1097 9.047947 ACAAGTACTCCCTCTGTAAAGAAATAT 57.952 33.333 0.00 0.00 0.00 1.28
1102 1103 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
1103 1104 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
1104 1105 8.204836 TCCCTCTGTAAAGAAATATAAGAGTGC 58.795 37.037 0.00 0.00 0.00 4.40
1105 1106 8.207545 CCCTCTGTAAAGAAATATAAGAGTGCT 58.792 37.037 0.00 0.00 0.00 4.40
1106 1107 9.606631 CCTCTGTAAAGAAATATAAGAGTGCTT 57.393 33.333 0.00 0.00 38.15 3.91
1124 1125 9.463902 AGAGTGCTTAGATAACTACTTTAGTGA 57.536 33.333 0.00 0.00 39.39 3.41
1136 1137 7.948034 ACTACTTTAGTGATCTAAGCACTCT 57.052 36.000 0.48 0.00 44.85 3.24
1137 1138 8.356000 ACTACTTTAGTGATCTAAGCACTCTT 57.644 34.615 0.48 0.00 44.85 2.85
1138 1139 9.463902 ACTACTTTAGTGATCTAAGCACTCTTA 57.536 33.333 0.48 0.00 44.85 2.10
1151 1152 9.745880 TCTAAGCACTCTTATATTTCTTTACGG 57.254 33.333 0.00 0.00 34.54 4.02
1152 1153 9.745880 CTAAGCACTCTTATATTTCTTTACGGA 57.254 33.333 0.00 0.00 34.54 4.69
1153 1154 8.649973 AAGCACTCTTATATTTCTTTACGGAG 57.350 34.615 0.00 0.00 0.00 4.63
1154 1155 7.210873 AGCACTCTTATATTTCTTTACGGAGG 58.789 38.462 0.00 0.00 0.00 4.30
1155 1156 6.424207 GCACTCTTATATTTCTTTACGGAGGG 59.576 42.308 0.00 0.00 0.00 4.30
1156 1157 7.686127 GCACTCTTATATTTCTTTACGGAGGGA 60.686 40.741 0.00 0.00 0.00 4.20
1157 1158 7.868415 CACTCTTATATTTCTTTACGGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
1158 1159 7.564292 ACTCTTATATTTCTTTACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
1159 1160 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
1160 1161 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
1161 1162 8.773033 TTATATTTCTTTACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
1205 1206 4.577693 ACCAAGTCTGTGCTGCATATTATG 59.422 41.667 5.27 0.00 0.00 1.90
1243 1245 6.964807 ATTGCTGCATATTACAGGAAATCA 57.035 33.333 1.84 0.00 46.49 2.57
1326 1328 2.856032 CACGCGGCTGTCTCTTTG 59.144 61.111 12.47 0.00 0.00 2.77
1573 1575 6.182039 TGCCTCTGAAGAAATTTCATAACG 57.818 37.500 19.99 4.86 0.00 3.18
1629 1631 7.206687 AGTTAAGCACAGTAAGAGAGCATATC 58.793 38.462 0.00 0.00 0.00 1.63
1681 1683 8.106247 TGTATTTGAACCACCTAGATTTTCAC 57.894 34.615 0.00 0.00 0.00 3.18
1695 1697 8.683615 CCTAGATTTTCACAAAGTATAAACCCC 58.316 37.037 0.00 0.00 0.00 4.95
1786 1791 1.528129 GGTTTTGAGACTCAGGCCTG 58.472 55.000 27.87 27.87 0.00 4.85
1842 1847 4.453480 TGAAGATTCCAAAACAGGTCCT 57.547 40.909 0.00 0.00 0.00 3.85
1917 1922 3.753272 AGGAAGTCACCATTGAAATCACG 59.247 43.478 0.00 0.00 31.90 4.35
2256 2261 2.743183 GCTCAAGTGCTTCATACCCGAT 60.743 50.000 0.00 0.00 0.00 4.18
2514 2519 2.686915 GCTAGTCAAAAGCATCAGCCAT 59.313 45.455 0.00 0.00 43.56 4.40
2658 2663 3.321682 GGATAGAAGAGATGCAGAGCAGT 59.678 47.826 0.00 0.00 43.65 4.40
2700 2705 0.104304 CGGTACAGTACATGGAGGGC 59.896 60.000 12.89 0.00 0.00 5.19
3030 3035 1.806461 GAGTCTGCTCCACGGTGACA 61.806 60.000 10.28 4.11 35.76 3.58
3138 3144 2.953605 GCATTGTGCACGCTCGTCA 61.954 57.895 13.13 0.00 44.26 4.35
3275 3281 1.702401 TGCATGGTGGACAAGTTCCTA 59.298 47.619 0.00 0.00 46.10 2.94
3314 3320 2.283676 GTGAGGGAGGTGACCGGA 60.284 66.667 9.46 0.00 0.00 5.14
3330 3336 4.008933 GAGACAGGGTGCTGCCGT 62.009 66.667 0.00 0.00 38.44 5.68
3453 3459 6.075984 ACCTATATGTCCGTGGAGATTTAGT 58.924 40.000 16.68 7.33 32.06 2.24
3484 3491 4.045104 GTCATACTTACTGCTGGTGATCG 58.955 47.826 0.00 0.00 0.00 3.69
3598 3605 3.978718 TGCACATGTGAATCAAACGAA 57.021 38.095 29.80 0.00 0.00 3.85
3599 3606 4.502171 TGCACATGTGAATCAAACGAAT 57.498 36.364 29.80 0.00 0.00 3.34
3600 3607 4.228317 TGCACATGTGAATCAAACGAATG 58.772 39.130 29.80 0.00 0.00 2.67
3601 3608 4.023365 TGCACATGTGAATCAAACGAATGA 60.023 37.500 29.80 0.00 0.00 2.57
3602 3609 4.556135 GCACATGTGAATCAAACGAATGAG 59.444 41.667 29.80 0.00 31.76 2.90
3627 3673 2.066700 TTGTGATGTGGGGCTGAGCA 62.067 55.000 6.82 0.00 0.00 4.26
3628 3674 1.077212 GTGATGTGGGGCTGAGCAT 60.077 57.895 6.82 0.00 0.00 3.79
3629 3675 1.099879 GTGATGTGGGGCTGAGCATC 61.100 60.000 6.82 0.29 38.45 3.91
3630 3676 1.527844 GATGTGGGGCTGAGCATCC 60.528 63.158 6.82 7.99 33.59 3.51
3631 3677 2.972892 GATGTGGGGCTGAGCATCCC 62.973 65.000 11.37 11.37 41.87 3.85
3635 3681 2.771762 GGGCTGAGCATCCCCTCT 60.772 66.667 6.82 0.00 36.50 3.69
3636 3682 1.460305 GGGCTGAGCATCCCCTCTA 60.460 63.158 6.82 0.00 36.50 2.43
3637 3683 0.839853 GGGCTGAGCATCCCCTCTAT 60.840 60.000 6.82 0.00 36.50 1.98
3638 3684 1.063183 GGCTGAGCATCCCCTCTATT 58.937 55.000 6.82 0.00 33.02 1.73
3639 3685 1.423161 GGCTGAGCATCCCCTCTATTT 59.577 52.381 6.82 0.00 33.02 1.40
3640 3686 2.551938 GGCTGAGCATCCCCTCTATTTC 60.552 54.545 6.82 0.00 33.02 2.17
3641 3687 2.371510 GCTGAGCATCCCCTCTATTTCT 59.628 50.000 0.00 0.00 33.02 2.52
3642 3688 3.556843 GCTGAGCATCCCCTCTATTTCTC 60.557 52.174 0.00 0.00 33.02 2.87
3643 3689 3.903090 CTGAGCATCCCCTCTATTTCTCT 59.097 47.826 0.00 0.00 33.02 3.10
3644 3690 3.645212 TGAGCATCCCCTCTATTTCTCTG 59.355 47.826 0.00 0.00 33.02 3.35
3645 3691 3.645687 GAGCATCCCCTCTATTTCTCTGT 59.354 47.826 0.00 0.00 0.00 3.41
3646 3692 4.820775 AGCATCCCCTCTATTTCTCTGTA 58.179 43.478 0.00 0.00 0.00 2.74
3647 3693 5.410602 AGCATCCCCTCTATTTCTCTGTAT 58.589 41.667 0.00 0.00 0.00 2.29
3648 3694 5.248020 AGCATCCCCTCTATTTCTCTGTATG 59.752 44.000 0.00 0.00 0.00 2.39
3649 3695 5.486526 CATCCCCTCTATTTCTCTGTATGC 58.513 45.833 0.00 0.00 0.00 3.14
3650 3696 4.820775 TCCCCTCTATTTCTCTGTATGCT 58.179 43.478 0.00 0.00 0.00 3.79
3651 3697 4.835615 TCCCCTCTATTTCTCTGTATGCTC 59.164 45.833 0.00 0.00 0.00 4.26
3652 3698 4.020662 CCCCTCTATTTCTCTGTATGCTCC 60.021 50.000 0.00 0.00 0.00 4.70
3653 3699 4.321601 CCCTCTATTTCTCTGTATGCTCCG 60.322 50.000 0.00 0.00 0.00 4.63
3654 3700 4.233789 CTCTATTTCTCTGTATGCTCCGC 58.766 47.826 0.00 0.00 0.00 5.54
3663 3709 1.142531 TATGCTCCGCTGCTCACTG 59.857 57.895 0.00 0.00 0.00 3.66
3664 3710 2.302199 TATGCTCCGCTGCTCACTGG 62.302 60.000 0.00 0.00 0.00 4.00
3673 3719 2.004808 CTGCTCACTGGCATGCCATG 62.005 60.000 38.47 32.62 46.15 3.66
3680 3726 1.175654 CTGGCATGCCATGTTGTGTA 58.824 50.000 38.47 13.63 46.15 2.90
3682 3728 0.887247 GGCATGCCATGTTGTGTACA 59.113 50.000 32.08 0.00 41.97 2.90
3683 3729 1.271934 GGCATGCCATGTTGTGTACAA 59.728 47.619 32.08 0.00 40.89 2.41
3684 3730 2.598589 GCATGCCATGTTGTGTACAAG 58.401 47.619 6.36 0.00 40.89 3.16
3685 3731 2.671914 GCATGCCATGTTGTGTACAAGG 60.672 50.000 6.36 0.00 46.15 3.61
3688 3734 0.887933 CCATGTTGTGTACAAGGCCC 59.112 55.000 0.00 0.00 38.64 5.80
3689 3735 0.521291 CATGTTGTGTACAAGGCCCG 59.479 55.000 0.00 0.00 40.89 6.13
3690 3736 0.608035 ATGTTGTGTACAAGGCCCGG 60.608 55.000 0.00 0.00 40.89 5.73
3691 3737 1.228033 GTTGTGTACAAGGCCCGGT 60.228 57.895 0.00 0.00 36.39 5.28
3692 3738 1.228003 TTGTGTACAAGGCCCGGTG 60.228 57.895 0.00 0.00 0.00 4.94
3693 3739 1.697082 TTGTGTACAAGGCCCGGTGA 61.697 55.000 0.00 0.00 0.00 4.02
3694 3740 1.375523 GTGTACAAGGCCCGGTGAG 60.376 63.158 0.00 0.00 0.00 3.51
3695 3741 2.436115 GTACAAGGCCCGGTGAGC 60.436 66.667 0.00 0.00 0.00 4.26
3696 3742 2.606519 TACAAGGCCCGGTGAGCT 60.607 61.111 0.00 0.00 0.00 4.09
3697 3743 2.954684 TACAAGGCCCGGTGAGCTG 61.955 63.158 0.00 0.00 0.00 4.24
3698 3744 4.335647 CAAGGCCCGGTGAGCTGT 62.336 66.667 0.00 0.00 0.00 4.40
3699 3745 3.570212 AAGGCCCGGTGAGCTGTT 61.570 61.111 0.00 0.00 0.00 3.16
3700 3746 3.850098 AAGGCCCGGTGAGCTGTTG 62.850 63.158 0.00 0.00 0.00 3.33
3701 3747 4.643387 GGCCCGGTGAGCTGTTGT 62.643 66.667 0.00 0.00 0.00 3.32
3702 3748 3.357079 GCCCGGTGAGCTGTTGTG 61.357 66.667 0.00 0.00 0.00 3.33
3703 3749 2.425592 CCCGGTGAGCTGTTGTGA 59.574 61.111 0.00 0.00 0.00 3.58
3704 3750 1.003355 CCCGGTGAGCTGTTGTGAT 60.003 57.895 0.00 0.00 0.00 3.06
3705 3751 1.021390 CCCGGTGAGCTGTTGTGATC 61.021 60.000 0.00 0.00 0.00 2.92
3706 3752 0.036952 CCGGTGAGCTGTTGTGATCT 60.037 55.000 0.00 0.00 0.00 2.75
3707 3753 1.609061 CCGGTGAGCTGTTGTGATCTT 60.609 52.381 0.00 0.00 0.00 2.40
3708 3754 2.146342 CGGTGAGCTGTTGTGATCTTT 58.854 47.619 0.00 0.00 0.00 2.52
3709 3755 3.325870 CGGTGAGCTGTTGTGATCTTTA 58.674 45.455 0.00 0.00 0.00 1.85
3710 3756 3.935203 CGGTGAGCTGTTGTGATCTTTAT 59.065 43.478 0.00 0.00 0.00 1.40
3711 3757 4.201753 CGGTGAGCTGTTGTGATCTTTATG 60.202 45.833 0.00 0.00 0.00 1.90
3712 3758 4.437930 GGTGAGCTGTTGTGATCTTTATGC 60.438 45.833 0.00 0.00 0.00 3.14
3713 3759 4.394300 GTGAGCTGTTGTGATCTTTATGCT 59.606 41.667 0.00 0.00 0.00 3.79
3714 3760 4.393990 TGAGCTGTTGTGATCTTTATGCTG 59.606 41.667 0.00 0.00 0.00 4.41
3715 3761 4.330250 AGCTGTTGTGATCTTTATGCTGT 58.670 39.130 0.00 0.00 0.00 4.40
3716 3762 4.394300 AGCTGTTGTGATCTTTATGCTGTC 59.606 41.667 0.00 0.00 0.00 3.51
3717 3763 4.154737 GCTGTTGTGATCTTTATGCTGTCA 59.845 41.667 0.00 0.00 0.00 3.58
3718 3764 5.611796 TGTTGTGATCTTTATGCTGTCAC 57.388 39.130 0.00 0.00 39.58 3.67
3719 3765 5.308014 TGTTGTGATCTTTATGCTGTCACT 58.692 37.500 0.00 0.00 39.78 3.41
3720 3766 5.764686 TGTTGTGATCTTTATGCTGTCACTT 59.235 36.000 0.00 0.00 39.78 3.16
3721 3767 6.262944 TGTTGTGATCTTTATGCTGTCACTTT 59.737 34.615 0.00 0.00 39.78 2.66
3722 3768 6.882610 TGTGATCTTTATGCTGTCACTTTT 57.117 33.333 0.00 0.00 39.78 2.27
3723 3769 6.902341 TGTGATCTTTATGCTGTCACTTTTC 58.098 36.000 0.00 0.00 39.78 2.29
3724 3770 6.712095 TGTGATCTTTATGCTGTCACTTTTCT 59.288 34.615 0.00 0.00 39.78 2.52
3725 3771 7.095060 TGTGATCTTTATGCTGTCACTTTTCTC 60.095 37.037 0.00 0.00 39.78 2.87
3726 3772 7.118971 GTGATCTTTATGCTGTCACTTTTCTCT 59.881 37.037 0.00 0.00 36.98 3.10
3727 3773 7.663081 TGATCTTTATGCTGTCACTTTTCTCTT 59.337 33.333 0.00 0.00 0.00 2.85
3728 3774 7.807977 TCTTTATGCTGTCACTTTTCTCTTT 57.192 32.000 0.00 0.00 0.00 2.52
3729 3775 8.902540 TCTTTATGCTGTCACTTTTCTCTTTA 57.097 30.769 0.00 0.00 0.00 1.85
3730 3776 9.507329 TCTTTATGCTGTCACTTTTCTCTTTAT 57.493 29.630 0.00 0.00 0.00 1.40
3731 3777 9.766277 CTTTATGCTGTCACTTTTCTCTTTATC 57.234 33.333 0.00 0.00 0.00 1.75
3732 3778 5.845985 TGCTGTCACTTTTCTCTTTATCG 57.154 39.130 0.00 0.00 0.00 2.92
3733 3779 5.538118 TGCTGTCACTTTTCTCTTTATCGA 58.462 37.500 0.00 0.00 0.00 3.59
3734 3780 6.166279 TGCTGTCACTTTTCTCTTTATCGAT 58.834 36.000 2.16 2.16 0.00 3.59
3735 3781 6.091305 TGCTGTCACTTTTCTCTTTATCGATG 59.909 38.462 8.54 0.00 0.00 3.84
3736 3782 6.311445 GCTGTCACTTTTCTCTTTATCGATGA 59.689 38.462 8.54 0.00 0.00 2.92
3737 3783 7.148573 GCTGTCACTTTTCTCTTTATCGATGAA 60.149 37.037 8.54 5.15 0.00 2.57
3738 3784 8.601845 TGTCACTTTTCTCTTTATCGATGAAA 57.398 30.769 8.54 5.98 0.00 2.69
3739 3785 9.051679 TGTCACTTTTCTCTTTATCGATGAAAA 57.948 29.630 8.54 13.18 35.94 2.29
3746 3792 7.624706 TCTCTTTATCGATGAAAAGATACGC 57.375 36.000 18.94 0.00 40.08 4.42
3747 3793 7.200455 TCTCTTTATCGATGAAAAGATACGCA 58.800 34.615 18.94 2.13 40.08 5.24
3748 3794 7.704899 TCTCTTTATCGATGAAAAGATACGCAA 59.295 33.333 18.94 1.57 40.08 4.85
3749 3795 7.841486 TCTTTATCGATGAAAAGATACGCAAG 58.159 34.615 16.04 0.00 36.93 4.01
3750 3796 3.925688 TCGATGAAAAGATACGCAAGC 57.074 42.857 0.00 0.00 45.62 4.01
3751 3797 3.521560 TCGATGAAAAGATACGCAAGCT 58.478 40.909 0.00 0.00 45.62 3.74
3752 3798 3.932710 TCGATGAAAAGATACGCAAGCTT 59.067 39.130 0.00 0.00 45.62 3.74
3753 3799 4.391830 TCGATGAAAAGATACGCAAGCTTT 59.608 37.500 0.00 0.00 45.62 3.51
3754 3800 4.493350 CGATGAAAAGATACGCAAGCTTTG 59.507 41.667 0.00 0.00 45.62 2.77
3769 3815 6.636666 CAAGCTTTGCGTATTCATGAAAAT 57.363 33.333 13.09 0.00 0.00 1.82
3770 3816 7.739022 CAAGCTTTGCGTATTCATGAAAATA 57.261 32.000 13.09 0.00 0.00 1.40
3771 3817 7.824673 CAAGCTTTGCGTATTCATGAAAATAG 58.175 34.615 13.09 5.79 0.00 1.73
3772 3818 7.320443 AGCTTTGCGTATTCATGAAAATAGA 57.680 32.000 13.09 0.00 0.00 1.98
3773 3819 7.761409 AGCTTTGCGTATTCATGAAAATAGAA 58.239 30.769 13.09 0.60 0.00 2.10
3774 3820 8.408601 AGCTTTGCGTATTCATGAAAATAGAAT 58.591 29.630 13.09 0.00 36.14 2.40
3775 3821 9.023967 GCTTTGCGTATTCATGAAAATAGAATT 57.976 29.630 13.09 0.00 34.19 2.17
3791 3837 9.880157 AAAATAGAATTTTTGTGATGGAGATGG 57.120 29.630 0.00 0.00 0.00 3.51
3792 3838 8.827832 AATAGAATTTTTGTGATGGAGATGGA 57.172 30.769 0.00 0.00 0.00 3.41
3793 3839 8.827832 ATAGAATTTTTGTGATGGAGATGGAA 57.172 30.769 0.00 0.00 0.00 3.53
3794 3840 7.166691 AGAATTTTTGTGATGGAGATGGAAG 57.833 36.000 0.00 0.00 0.00 3.46
3795 3841 5.927281 ATTTTTGTGATGGAGATGGAAGG 57.073 39.130 0.00 0.00 0.00 3.46
3796 3842 4.656100 TTTTGTGATGGAGATGGAAGGA 57.344 40.909 0.00 0.00 0.00 3.36
3797 3843 4.868172 TTTGTGATGGAGATGGAAGGAT 57.132 40.909 0.00 0.00 0.00 3.24
3798 3844 4.868172 TTGTGATGGAGATGGAAGGATT 57.132 40.909 0.00 0.00 0.00 3.01
3799 3845 4.160642 TGTGATGGAGATGGAAGGATTG 57.839 45.455 0.00 0.00 0.00 2.67
3800 3846 3.781965 TGTGATGGAGATGGAAGGATTGA 59.218 43.478 0.00 0.00 0.00 2.57
3801 3847 4.227982 TGTGATGGAGATGGAAGGATTGAA 59.772 41.667 0.00 0.00 0.00 2.69
3802 3848 5.103813 TGTGATGGAGATGGAAGGATTGAAT 60.104 40.000 0.00 0.00 0.00 2.57
3803 3849 5.832060 GTGATGGAGATGGAAGGATTGAATT 59.168 40.000 0.00 0.00 0.00 2.17
3804 3850 5.831525 TGATGGAGATGGAAGGATTGAATTG 59.168 40.000 0.00 0.00 0.00 2.32
3805 3851 4.539726 TGGAGATGGAAGGATTGAATTGG 58.460 43.478 0.00 0.00 0.00 3.16
3806 3852 4.017222 TGGAGATGGAAGGATTGAATTGGT 60.017 41.667 0.00 0.00 0.00 3.67
3807 3853 5.193527 TGGAGATGGAAGGATTGAATTGGTA 59.806 40.000 0.00 0.00 0.00 3.25
3808 3854 5.767168 GGAGATGGAAGGATTGAATTGGTAG 59.233 44.000 0.00 0.00 0.00 3.18
3809 3855 6.332976 AGATGGAAGGATTGAATTGGTAGT 57.667 37.500 0.00 0.00 0.00 2.73
3810 3856 6.125029 AGATGGAAGGATTGAATTGGTAGTG 58.875 40.000 0.00 0.00 0.00 2.74
3811 3857 5.255397 TGGAAGGATTGAATTGGTAGTGT 57.745 39.130 0.00 0.00 0.00 3.55
3812 3858 5.009631 TGGAAGGATTGAATTGGTAGTGTG 58.990 41.667 0.00 0.00 0.00 3.82
3813 3859 5.222027 TGGAAGGATTGAATTGGTAGTGTGA 60.222 40.000 0.00 0.00 0.00 3.58
3814 3860 5.888161 GGAAGGATTGAATTGGTAGTGTGAT 59.112 40.000 0.00 0.00 0.00 3.06
3815 3861 6.378280 GGAAGGATTGAATTGGTAGTGTGATT 59.622 38.462 0.00 0.00 0.00 2.57
3816 3862 7.396540 AAGGATTGAATTGGTAGTGTGATTC 57.603 36.000 0.00 0.00 0.00 2.52
3817 3863 6.484288 AGGATTGAATTGGTAGTGTGATTCA 58.516 36.000 0.00 0.00 36.89 2.57
3818 3864 6.375455 AGGATTGAATTGGTAGTGTGATTCAC 59.625 38.462 9.93 9.93 46.46 3.18
3830 3876 5.627802 GTGTGATTCACTAGCAGATAACG 57.372 43.478 17.26 0.00 43.13 3.18
3831 3877 5.340803 GTGTGATTCACTAGCAGATAACGA 58.659 41.667 17.26 0.00 43.13 3.85
3832 3878 5.805486 GTGTGATTCACTAGCAGATAACGAA 59.195 40.000 17.26 0.00 43.13 3.85
3833 3879 6.310467 GTGTGATTCACTAGCAGATAACGAAA 59.690 38.462 17.26 0.00 43.13 3.46
3834 3880 6.531594 TGTGATTCACTAGCAGATAACGAAAG 59.468 38.462 17.26 0.00 35.11 2.62
3835 3881 5.520288 TGATTCACTAGCAGATAACGAAAGC 59.480 40.000 0.00 0.00 0.00 3.51
3836 3882 4.720649 TCACTAGCAGATAACGAAAGCT 57.279 40.909 0.00 0.00 39.22 3.74
3837 3883 4.673441 TCACTAGCAGATAACGAAAGCTC 58.327 43.478 0.00 0.00 36.80 4.09
3838 3884 4.157840 TCACTAGCAGATAACGAAAGCTCA 59.842 41.667 0.00 0.00 36.80 4.26
3839 3885 4.266502 CACTAGCAGATAACGAAAGCTCAC 59.733 45.833 0.00 0.00 36.80 3.51
3840 3886 3.319137 AGCAGATAACGAAAGCTCACA 57.681 42.857 0.00 0.00 0.00 3.58
3841 3887 3.664107 AGCAGATAACGAAAGCTCACAA 58.336 40.909 0.00 0.00 0.00 3.33
3842 3888 4.065088 AGCAGATAACGAAAGCTCACAAA 58.935 39.130 0.00 0.00 0.00 2.83
3843 3889 4.515191 AGCAGATAACGAAAGCTCACAAAA 59.485 37.500 0.00 0.00 0.00 2.44
3844 3890 5.182001 AGCAGATAACGAAAGCTCACAAAAT 59.818 36.000 0.00 0.00 0.00 1.82
3845 3891 5.284660 GCAGATAACGAAAGCTCACAAAATG 59.715 40.000 0.00 0.00 0.00 2.32
3846 3892 6.373779 CAGATAACGAAAGCTCACAAAATGT 58.626 36.000 0.00 0.00 0.00 2.71
3847 3893 7.518161 CAGATAACGAAAGCTCACAAAATGTA 58.482 34.615 0.00 0.00 0.00 2.29
3848 3894 7.689812 CAGATAACGAAAGCTCACAAAATGTAG 59.310 37.037 0.00 0.00 0.00 2.74
3849 3895 7.602644 AGATAACGAAAGCTCACAAAATGTAGA 59.397 33.333 0.00 0.00 0.00 2.59
3850 3896 6.371809 AACGAAAGCTCACAAAATGTAGAA 57.628 33.333 0.00 0.00 0.00 2.10
3851 3897 5.748592 ACGAAAGCTCACAAAATGTAGAAC 58.251 37.500 0.00 0.00 0.00 3.01
3852 3898 5.147162 CGAAAGCTCACAAAATGTAGAACC 58.853 41.667 0.00 0.00 0.00 3.62
3853 3899 5.277779 CGAAAGCTCACAAAATGTAGAACCA 60.278 40.000 0.00 0.00 0.00 3.67
3854 3900 6.568462 CGAAAGCTCACAAAATGTAGAACCAT 60.568 38.462 0.00 0.00 0.00 3.55
3855 3901 5.633830 AGCTCACAAAATGTAGAACCATG 57.366 39.130 0.00 0.00 0.00 3.66
3856 3902 5.316167 AGCTCACAAAATGTAGAACCATGA 58.684 37.500 0.00 0.00 0.00 3.07
3857 3903 5.769662 AGCTCACAAAATGTAGAACCATGAA 59.230 36.000 0.00 0.00 0.00 2.57
3858 3904 5.858581 GCTCACAAAATGTAGAACCATGAAC 59.141 40.000 0.00 0.00 0.00 3.18
3859 3905 6.514870 GCTCACAAAATGTAGAACCATGAACA 60.515 38.462 0.00 0.00 0.00 3.18
3860 3906 6.969366 TCACAAAATGTAGAACCATGAACAG 58.031 36.000 0.00 0.00 0.00 3.16
3861 3907 6.770303 TCACAAAATGTAGAACCATGAACAGA 59.230 34.615 0.00 0.00 0.00 3.41
3880 3926 9.791820 TGAACAGATAATGCATAACAAAATCAG 57.208 29.630 0.00 0.00 0.00 2.90
4062 4882 5.930837 TTTTTGAGAATCCACACAGGTTT 57.069 34.783 0.00 0.00 39.02 3.27
4063 4883 5.930837 TTTTGAGAATCCACACAGGTTTT 57.069 34.783 0.00 0.00 39.02 2.43
4066 4886 4.792068 TGAGAATCCACACAGGTTTTTCT 58.208 39.130 0.00 0.00 39.02 2.52
4068 4888 5.656416 TGAGAATCCACACAGGTTTTTCTTT 59.344 36.000 0.00 0.00 39.02 2.52
4069 4889 5.906073 AGAATCCACACAGGTTTTTCTTTG 58.094 37.500 0.00 0.00 39.02 2.77
4070 4890 5.422012 AGAATCCACACAGGTTTTTCTTTGT 59.578 36.000 0.00 0.00 39.02 2.83
4072 4892 4.815269 TCCACACAGGTTTTTCTTTGTTG 58.185 39.130 0.00 0.00 39.02 3.33
4073 4893 4.282195 TCCACACAGGTTTTTCTTTGTTGT 59.718 37.500 0.00 0.00 39.02 3.32
4075 4895 5.469479 CACACAGGTTTTTCTTTGTTGTCT 58.531 37.500 0.00 0.00 0.00 3.41
4076 4896 5.572896 CACACAGGTTTTTCTTTGTTGTCTC 59.427 40.000 0.00 0.00 0.00 3.36
4081 4901 8.352942 ACAGGTTTTTCTTTGTTGTCTCATATC 58.647 33.333 0.00 0.00 0.00 1.63
4097 4926 8.440771 TGTCTCATATCTCACAGGTATAAGAGA 58.559 37.037 0.00 0.00 40.96 3.10
4114 4943 2.771762 AGGATGGAGAGCTGGCCC 60.772 66.667 0.00 0.00 0.00 5.80
4115 4944 3.092511 GGATGGAGAGCTGGCCCA 61.093 66.667 0.00 0.00 0.00 5.36
4116 4945 2.509916 GATGGAGAGCTGGCCCAG 59.490 66.667 6.32 6.32 32.90 4.45
4117 4946 2.285969 ATGGAGAGCTGGCCCAGT 60.286 61.111 13.35 0.00 33.43 4.00
4118 4947 1.919600 GATGGAGAGCTGGCCCAGTT 61.920 60.000 13.35 6.11 33.43 3.16
4119 4948 1.504275 ATGGAGAGCTGGCCCAGTTT 61.504 55.000 13.35 0.55 33.43 2.66
4120 4949 1.676967 GGAGAGCTGGCCCAGTTTG 60.677 63.158 13.35 0.00 33.43 2.93
4121 4950 1.073897 GAGAGCTGGCCCAGTTTGT 59.926 57.895 13.35 0.00 33.43 2.83
4122 4951 0.538287 GAGAGCTGGCCCAGTTTGTT 60.538 55.000 13.35 0.00 33.43 2.83
4123 4952 0.106015 AGAGCTGGCCCAGTTTGTTT 60.106 50.000 13.35 0.00 33.43 2.83
4124 4953 1.144913 AGAGCTGGCCCAGTTTGTTTA 59.855 47.619 13.35 0.00 33.43 2.01
4125 4954 2.171003 GAGCTGGCCCAGTTTGTTTAT 58.829 47.619 13.35 0.00 33.43 1.40
4126 4955 2.562738 GAGCTGGCCCAGTTTGTTTATT 59.437 45.455 13.35 0.00 33.43 1.40
4127 4956 2.299867 AGCTGGCCCAGTTTGTTTATTG 59.700 45.455 13.35 0.00 33.43 1.90
4128 4957 2.298729 GCTGGCCCAGTTTGTTTATTGA 59.701 45.455 13.35 0.00 33.43 2.57
4129 4958 3.614870 GCTGGCCCAGTTTGTTTATTGAG 60.615 47.826 13.35 0.00 33.43 3.02
4130 4959 2.896685 TGGCCCAGTTTGTTTATTGAGG 59.103 45.455 0.00 0.00 0.00 3.86
4131 4960 2.233676 GGCCCAGTTTGTTTATTGAGGG 59.766 50.000 0.00 0.00 38.10 4.30
4132 4961 2.897326 GCCCAGTTTGTTTATTGAGGGT 59.103 45.455 0.00 0.00 37.38 4.34
4133 4962 3.056821 GCCCAGTTTGTTTATTGAGGGTC 60.057 47.826 0.00 0.00 37.38 4.46
4134 4963 3.509967 CCCAGTTTGTTTATTGAGGGTCC 59.490 47.826 0.00 0.00 0.00 4.46
4184 5043 3.064931 CCCAGTTAAGTCCAAAGTCGTC 58.935 50.000 0.00 0.00 0.00 4.20
4209 5068 4.739793 CCCAGCCCATTTATATCTTGGAA 58.260 43.478 0.00 0.00 31.94 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.064654 CTCTTGGCTAAAATCGGCAGC 59.935 52.381 0.00 0.00 38.23 5.25
86 87 3.560882 GCTCCATTATGGCCTTGCTAGAT 60.561 47.826 6.33 0.00 37.47 1.98
133 134 8.255111 AGATTCCAGTATCTGTGTCATATTGA 57.745 34.615 0.00 0.00 33.68 2.57
189 190 2.540383 TCCTCTGCACCTTACAGTGAT 58.460 47.619 0.00 0.00 40.34 3.06
404 405 3.967326 CAGACCTCCTATTGGGTATGTCA 59.033 47.826 0.00 0.00 39.23 3.58
530 531 7.935755 CCATCATACAGAGGTTCAACATATTCT 59.064 37.037 0.00 0.00 0.00 2.40
542 543 5.664908 ACAGAAGAATCCATCATACAGAGGT 59.335 40.000 0.00 0.00 0.00 3.85
607 608 0.107897 GTCATATGTCACACCGCCCA 60.108 55.000 1.90 0.00 0.00 5.36
652 653 1.143305 CAAACTGTCTGCAGACCTCG 58.857 55.000 37.23 27.83 45.28 4.63
1028 1029 5.326200 AGATGAGTTTACGTAGGGACAAG 57.674 43.478 0.00 0.00 0.00 3.16
1079 1080 8.207545 AGCACTCTTATATTTCTTTACAGAGGG 58.792 37.037 0.00 0.00 34.08 4.30
1080 1081 9.606631 AAGCACTCTTATATTTCTTTACAGAGG 57.393 33.333 0.00 0.00 32.21 3.69
1098 1099 9.463902 TCACTAAAGTAGTTATCTAAGCACTCT 57.536 33.333 0.00 0.00 36.76 3.24
1110 1111 9.463902 AGAGTGCTTAGATCACTAAAGTAGTTA 57.536 33.333 0.00 0.00 44.09 2.24
1111 1112 8.356000 AGAGTGCTTAGATCACTAAAGTAGTT 57.644 34.615 0.00 0.00 44.09 2.24
1112 1113 7.948034 AGAGTGCTTAGATCACTAAAGTAGT 57.052 36.000 0.00 0.00 44.09 2.73
1125 1126 9.745880 CCGTAAAGAAATATAAGAGTGCTTAGA 57.254 33.333 0.00 0.00 39.79 2.10
1126 1127 9.745880 TCCGTAAAGAAATATAAGAGTGCTTAG 57.254 33.333 0.00 0.00 39.79 2.18
1127 1128 9.745880 CTCCGTAAAGAAATATAAGAGTGCTTA 57.254 33.333 0.00 0.00 40.65 3.09
1128 1129 7.711339 CCTCCGTAAAGAAATATAAGAGTGCTT 59.289 37.037 0.00 0.00 38.15 3.91
1129 1130 7.210873 CCTCCGTAAAGAAATATAAGAGTGCT 58.789 38.462 0.00 0.00 0.00 4.40
1130 1131 6.424207 CCCTCCGTAAAGAAATATAAGAGTGC 59.576 42.308 0.00 0.00 0.00 4.40
1131 1132 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
1132 1133 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
1133 1134 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
1134 1135 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1135 1136 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
1136 1137 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
1137 1138 8.773033 AAGTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
1138 1139 7.672122 AAGTACTCCCTCCGTAAAGAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
1139 1140 8.470002 GTTAAGTACTCCCTCCGTAAAGAAATA 58.530 37.037 0.00 0.00 0.00 1.40
1140 1141 7.179872 AGTTAAGTACTCCCTCCGTAAAGAAAT 59.820 37.037 0.00 0.00 28.23 2.17
1141 1142 6.494835 AGTTAAGTACTCCCTCCGTAAAGAAA 59.505 38.462 0.00 0.00 28.23 2.52
1142 1143 6.012745 AGTTAAGTACTCCCTCCGTAAAGAA 58.987 40.000 0.00 0.00 28.23 2.52
1143 1144 5.416952 CAGTTAAGTACTCCCTCCGTAAAGA 59.583 44.000 0.00 0.00 33.85 2.52
1144 1145 5.416952 TCAGTTAAGTACTCCCTCCGTAAAG 59.583 44.000 0.00 0.00 33.85 1.85
1145 1146 5.324409 TCAGTTAAGTACTCCCTCCGTAAA 58.676 41.667 0.00 0.00 33.85 2.01
1146 1147 4.922206 TCAGTTAAGTACTCCCTCCGTAA 58.078 43.478 0.00 0.00 33.85 3.18
1147 1148 4.574674 TCAGTTAAGTACTCCCTCCGTA 57.425 45.455 0.00 0.00 33.85 4.02
1148 1149 3.446442 TCAGTTAAGTACTCCCTCCGT 57.554 47.619 0.00 0.00 33.85 4.69
1149 1150 3.003482 CGATCAGTTAAGTACTCCCTCCG 59.997 52.174 0.00 0.00 33.85 4.63
1150 1151 3.318557 CCGATCAGTTAAGTACTCCCTCC 59.681 52.174 0.00 0.00 33.85 4.30
1151 1152 3.243468 GCCGATCAGTTAAGTACTCCCTC 60.243 52.174 0.00 0.00 33.85 4.30
1152 1153 2.694109 GCCGATCAGTTAAGTACTCCCT 59.306 50.000 0.00 0.00 33.85 4.20
1153 1154 2.694109 AGCCGATCAGTTAAGTACTCCC 59.306 50.000 0.00 0.00 33.85 4.30
1154 1155 3.707793 CAGCCGATCAGTTAAGTACTCC 58.292 50.000 0.00 0.00 33.85 3.85
1155 1156 3.117046 GCAGCCGATCAGTTAAGTACTC 58.883 50.000 0.00 0.00 33.85 2.59
1156 1157 2.761208 AGCAGCCGATCAGTTAAGTACT 59.239 45.455 0.00 0.00 37.68 2.73
1157 1158 3.166489 AGCAGCCGATCAGTTAAGTAC 57.834 47.619 0.00 0.00 0.00 2.73
1158 1159 3.521560 CAAGCAGCCGATCAGTTAAGTA 58.478 45.455 0.00 0.00 0.00 2.24
1159 1160 2.350522 CAAGCAGCCGATCAGTTAAGT 58.649 47.619 0.00 0.00 0.00 2.24
1160 1161 1.667724 CCAAGCAGCCGATCAGTTAAG 59.332 52.381 0.00 0.00 0.00 1.85
1161 1162 1.737838 CCAAGCAGCCGATCAGTTAA 58.262 50.000 0.00 0.00 0.00 2.01
1205 1206 6.724694 TGCAGCAATTGTTAAAATTCCATC 57.275 33.333 7.40 0.00 0.00 3.51
1326 1328 4.173256 GAGACTCTGAAAGCTCTAGCAAC 58.827 47.826 4.54 0.00 45.16 4.17
1617 1619 7.992033 AGAAAACAATAGCAGATATGCTCTCTT 59.008 33.333 19.91 8.41 45.00 2.85
1629 1631 5.628193 CAGACTTGCAAGAAAACAATAGCAG 59.372 40.000 32.50 1.76 33.14 4.24
1681 1683 6.850752 AATGACAAGGGGGTTTATACTTTG 57.149 37.500 0.00 0.00 0.00 2.77
1695 1697 8.110860 AGTGGAACAACTATTAAATGACAAGG 57.889 34.615 0.00 0.00 44.16 3.61
1842 1847 1.942776 TCTCCATCTGCACCTCTTCA 58.057 50.000 0.00 0.00 0.00 3.02
1964 1969 1.207488 TGCTGCCTTATGGACCACCT 61.207 55.000 0.00 0.00 37.04 4.00
2256 2261 3.603532 GATGATGCTGAGGTTGAAGTCA 58.396 45.455 0.00 0.00 0.00 3.41
2457 2462 1.588597 CGTCTTGCAGAGCCTCTCA 59.411 57.895 0.00 0.00 32.06 3.27
2514 2519 1.675310 CTCGGTGATTTGCCTGGCA 60.675 57.895 19.30 19.30 36.47 4.92
2658 2663 0.767375 ACCTGCTCCTTCTCTTTGCA 59.233 50.000 0.00 0.00 0.00 4.08
2957 2962 0.823356 GAGGGTCTTGTTGCCTTGCA 60.823 55.000 0.00 0.00 36.47 4.08
3030 3035 0.758685 CCTCGAGGAGGCAGAAGGAT 60.759 60.000 28.21 0.00 43.29 3.24
3066 3071 4.426313 TCGAGGCAGCCGAGGAGA 62.426 66.667 5.55 0.00 0.00 3.71
3076 3081 4.121669 GCTGTCGCTCTCGAGGCA 62.122 66.667 20.87 9.46 46.46 4.75
3122 3128 1.569493 GTTGACGAGCGTGCACAAT 59.431 52.632 18.64 3.72 0.00 2.71
3123 3129 2.866010 CGTTGACGAGCGTGCACAA 61.866 57.895 18.64 0.00 43.02 3.33
3314 3320 4.008933 GACGGCAGCACCCTGTCT 62.009 66.667 0.00 0.00 41.55 3.41
3469 3475 5.935206 TGTTTTAATCGATCACCAGCAGTAA 59.065 36.000 0.00 0.00 0.00 2.24
3627 3673 5.410602 AGCATACAGAGAAATAGAGGGGAT 58.589 41.667 0.00 0.00 0.00 3.85
3628 3674 4.820775 AGCATACAGAGAAATAGAGGGGA 58.179 43.478 0.00 0.00 0.00 4.81
3629 3675 4.020662 GGAGCATACAGAGAAATAGAGGGG 60.021 50.000 0.00 0.00 0.00 4.79
3630 3676 4.321601 CGGAGCATACAGAGAAATAGAGGG 60.322 50.000 0.00 0.00 0.00 4.30
3631 3677 4.804108 CGGAGCATACAGAGAAATAGAGG 58.196 47.826 0.00 0.00 0.00 3.69
3649 3695 4.383861 TGCCAGTGAGCAGCGGAG 62.384 66.667 2.57 0.00 38.00 4.63
3663 3709 0.887247 TGTACACAACATGGCATGCC 59.113 50.000 30.54 30.54 31.43 4.40
3664 3710 2.598589 CTTGTACACAACATGGCATGC 58.401 47.619 26.70 9.90 38.10 4.06
3673 3719 1.228033 ACCGGGCCTTGTACACAAC 60.228 57.895 6.32 0.00 0.00 3.32
3680 3726 4.335647 CAGCTCACCGGGCCTTGT 62.336 66.667 6.32 0.00 0.00 3.16
3682 3728 3.570212 AACAGCTCACCGGGCCTT 61.570 61.111 6.32 0.00 0.00 4.35
3683 3729 4.335647 CAACAGCTCACCGGGCCT 62.336 66.667 6.32 0.00 0.00 5.19
3684 3730 4.643387 ACAACAGCTCACCGGGCC 62.643 66.667 6.32 0.00 0.00 5.80
3685 3731 3.357079 CACAACAGCTCACCGGGC 61.357 66.667 6.32 0.00 0.00 6.13
3686 3732 1.003355 ATCACAACAGCTCACCGGG 60.003 57.895 6.32 0.00 0.00 5.73
3687 3733 0.036952 AGATCACAACAGCTCACCGG 60.037 55.000 0.00 0.00 0.00 5.28
3688 3734 1.800805 AAGATCACAACAGCTCACCG 58.199 50.000 0.00 0.00 0.00 4.94
3689 3735 4.437930 GCATAAAGATCACAACAGCTCACC 60.438 45.833 0.00 0.00 0.00 4.02
3690 3736 4.394300 AGCATAAAGATCACAACAGCTCAC 59.606 41.667 0.00 0.00 0.00 3.51
3691 3737 4.393990 CAGCATAAAGATCACAACAGCTCA 59.606 41.667 0.00 0.00 0.00 4.26
3692 3738 4.394300 ACAGCATAAAGATCACAACAGCTC 59.606 41.667 0.00 0.00 0.00 4.09
3693 3739 4.330250 ACAGCATAAAGATCACAACAGCT 58.670 39.130 0.00 0.00 0.00 4.24
3694 3740 4.154737 TGACAGCATAAAGATCACAACAGC 59.845 41.667 0.00 0.00 0.00 4.40
3695 3741 5.410746 AGTGACAGCATAAAGATCACAACAG 59.589 40.000 5.56 0.00 41.72 3.16
3696 3742 5.308014 AGTGACAGCATAAAGATCACAACA 58.692 37.500 5.56 0.00 41.72 3.33
3697 3743 5.869753 AGTGACAGCATAAAGATCACAAC 57.130 39.130 5.56 0.00 41.72 3.32
3698 3744 6.882610 AAAGTGACAGCATAAAGATCACAA 57.117 33.333 5.56 0.00 41.72 3.33
3699 3745 6.712095 AGAAAAGTGACAGCATAAAGATCACA 59.288 34.615 5.56 0.00 41.72 3.58
3700 3746 7.118971 AGAGAAAAGTGACAGCATAAAGATCAC 59.881 37.037 0.00 0.00 39.99 3.06
3701 3747 7.164122 AGAGAAAAGTGACAGCATAAAGATCA 58.836 34.615 0.00 0.00 0.00 2.92
3702 3748 7.608308 AGAGAAAAGTGACAGCATAAAGATC 57.392 36.000 0.00 0.00 0.00 2.75
3703 3749 7.992754 AAGAGAAAAGTGACAGCATAAAGAT 57.007 32.000 0.00 0.00 0.00 2.40
3704 3750 7.807977 AAAGAGAAAAGTGACAGCATAAAGA 57.192 32.000 0.00 0.00 0.00 2.52
3705 3751 9.766277 GATAAAGAGAAAAGTGACAGCATAAAG 57.234 33.333 0.00 0.00 0.00 1.85
3706 3752 8.443160 CGATAAAGAGAAAAGTGACAGCATAAA 58.557 33.333 0.00 0.00 0.00 1.40
3707 3753 7.817478 TCGATAAAGAGAAAAGTGACAGCATAA 59.183 33.333 0.00 0.00 0.00 1.90
3708 3754 7.320399 TCGATAAAGAGAAAAGTGACAGCATA 58.680 34.615 0.00 0.00 0.00 3.14
3709 3755 6.166279 TCGATAAAGAGAAAAGTGACAGCAT 58.834 36.000 0.00 0.00 0.00 3.79
3710 3756 5.538118 TCGATAAAGAGAAAAGTGACAGCA 58.462 37.500 0.00 0.00 0.00 4.41
3711 3757 6.311445 TCATCGATAAAGAGAAAAGTGACAGC 59.689 38.462 0.00 0.00 0.00 4.40
3712 3758 7.818493 TCATCGATAAAGAGAAAAGTGACAG 57.182 36.000 0.00 0.00 0.00 3.51
3713 3759 8.601845 TTTCATCGATAAAGAGAAAAGTGACA 57.398 30.769 0.00 0.00 0.00 3.58
3714 3760 9.535270 CTTTTCATCGATAAAGAGAAAAGTGAC 57.465 33.333 25.28 0.00 44.81 3.67
3720 3766 8.540492 GCGTATCTTTTCATCGATAAAGAGAAA 58.460 33.333 21.70 13.91 41.96 2.52
3721 3767 7.704899 TGCGTATCTTTTCATCGATAAAGAGAA 59.295 33.333 21.70 13.36 41.96 2.87
3722 3768 7.200455 TGCGTATCTTTTCATCGATAAAGAGA 58.800 34.615 21.70 17.10 41.96 3.10
3723 3769 7.394870 TGCGTATCTTTTCATCGATAAAGAG 57.605 36.000 21.70 10.18 41.96 2.85
3724 3770 7.516785 GCTTGCGTATCTTTTCATCGATAAAGA 60.517 37.037 20.27 20.27 42.62 2.52
3725 3771 6.571520 GCTTGCGTATCTTTTCATCGATAAAG 59.428 38.462 12.55 12.55 33.65 1.85
3726 3772 6.257849 AGCTTGCGTATCTTTTCATCGATAAA 59.742 34.615 0.00 0.00 0.00 1.40
3727 3773 5.753438 AGCTTGCGTATCTTTTCATCGATAA 59.247 36.000 0.00 0.00 0.00 1.75
3728 3774 5.289595 AGCTTGCGTATCTTTTCATCGATA 58.710 37.500 0.00 0.00 0.00 2.92
3729 3775 4.122776 AGCTTGCGTATCTTTTCATCGAT 58.877 39.130 0.00 0.00 0.00 3.59
3730 3776 3.521560 AGCTTGCGTATCTTTTCATCGA 58.478 40.909 0.00 0.00 0.00 3.59
3731 3777 3.933155 AGCTTGCGTATCTTTTCATCG 57.067 42.857 0.00 0.00 0.00 3.84
3732 3778 5.921784 CAAAGCTTGCGTATCTTTTCATC 57.078 39.130 0.00 0.00 0.00 2.92
3746 3792 6.636666 ATTTTCATGAATACGCAAAGCTTG 57.363 33.333 9.40 0.00 0.00 4.01
3747 3793 7.761409 TCTATTTTCATGAATACGCAAAGCTT 58.239 30.769 9.40 0.00 0.00 3.74
3748 3794 7.320443 TCTATTTTCATGAATACGCAAAGCT 57.680 32.000 9.40 0.00 0.00 3.74
3749 3795 7.969387 TTCTATTTTCATGAATACGCAAAGC 57.031 32.000 9.40 0.00 0.00 3.51
3765 3811 9.880157 CCATCTCCATCACAAAAATTCTATTTT 57.120 29.630 0.00 0.00 32.89 1.82
3766 3812 9.258629 TCCATCTCCATCACAAAAATTCTATTT 57.741 29.630 0.00 0.00 0.00 1.40
3767 3813 8.827832 TCCATCTCCATCACAAAAATTCTATT 57.172 30.769 0.00 0.00 0.00 1.73
3768 3814 8.827832 TTCCATCTCCATCACAAAAATTCTAT 57.172 30.769 0.00 0.00 0.00 1.98
3769 3815 7.340232 CCTTCCATCTCCATCACAAAAATTCTA 59.660 37.037 0.00 0.00 0.00 2.10
3770 3816 6.154021 CCTTCCATCTCCATCACAAAAATTCT 59.846 38.462 0.00 0.00 0.00 2.40
3771 3817 6.153340 TCCTTCCATCTCCATCACAAAAATTC 59.847 38.462 0.00 0.00 0.00 2.17
3772 3818 6.018469 TCCTTCCATCTCCATCACAAAAATT 58.982 36.000 0.00 0.00 0.00 1.82
3773 3819 5.582953 TCCTTCCATCTCCATCACAAAAAT 58.417 37.500 0.00 0.00 0.00 1.82
3774 3820 4.996793 TCCTTCCATCTCCATCACAAAAA 58.003 39.130 0.00 0.00 0.00 1.94
3775 3821 4.656100 TCCTTCCATCTCCATCACAAAA 57.344 40.909 0.00 0.00 0.00 2.44
3776 3822 4.868172 ATCCTTCCATCTCCATCACAAA 57.132 40.909 0.00 0.00 0.00 2.83
3777 3823 4.227982 TCAATCCTTCCATCTCCATCACAA 59.772 41.667 0.00 0.00 0.00 3.33
3778 3824 3.781965 TCAATCCTTCCATCTCCATCACA 59.218 43.478 0.00 0.00 0.00 3.58
3779 3825 4.428294 TCAATCCTTCCATCTCCATCAC 57.572 45.455 0.00 0.00 0.00 3.06
3780 3826 5.658198 ATTCAATCCTTCCATCTCCATCA 57.342 39.130 0.00 0.00 0.00 3.07
3781 3827 5.243283 CCAATTCAATCCTTCCATCTCCATC 59.757 44.000 0.00 0.00 0.00 3.51
3782 3828 5.145564 CCAATTCAATCCTTCCATCTCCAT 58.854 41.667 0.00 0.00 0.00 3.41
3783 3829 4.017222 ACCAATTCAATCCTTCCATCTCCA 60.017 41.667 0.00 0.00 0.00 3.86
3784 3830 4.540715 ACCAATTCAATCCTTCCATCTCC 58.459 43.478 0.00 0.00 0.00 3.71
3785 3831 6.261826 CACTACCAATTCAATCCTTCCATCTC 59.738 42.308 0.00 0.00 0.00 2.75
3786 3832 6.125029 CACTACCAATTCAATCCTTCCATCT 58.875 40.000 0.00 0.00 0.00 2.90
3787 3833 5.888161 ACACTACCAATTCAATCCTTCCATC 59.112 40.000 0.00 0.00 0.00 3.51
3788 3834 5.653769 CACACTACCAATTCAATCCTTCCAT 59.346 40.000 0.00 0.00 0.00 3.41
3789 3835 5.009631 CACACTACCAATTCAATCCTTCCA 58.990 41.667 0.00 0.00 0.00 3.53
3790 3836 5.253330 TCACACTACCAATTCAATCCTTCC 58.747 41.667 0.00 0.00 0.00 3.46
3791 3837 7.121168 TGAATCACACTACCAATTCAATCCTTC 59.879 37.037 0.00 0.00 35.72 3.46
3792 3838 6.947733 TGAATCACACTACCAATTCAATCCTT 59.052 34.615 0.00 0.00 35.72 3.36
3793 3839 6.375455 GTGAATCACACTACCAATTCAATCCT 59.625 38.462 8.74 0.00 45.13 3.24
3794 3840 6.555315 GTGAATCACACTACCAATTCAATCC 58.445 40.000 8.74 0.00 45.13 3.01
3809 3855 5.576447 TCGTTATCTGCTAGTGAATCACA 57.424 39.130 16.38 1.00 36.74 3.58
3810 3856 6.508721 GCTTTCGTTATCTGCTAGTGAATCAC 60.509 42.308 5.02 5.02 34.10 3.06
3811 3857 5.520288 GCTTTCGTTATCTGCTAGTGAATCA 59.480 40.000 0.00 0.00 0.00 2.57
3812 3858 5.751028 AGCTTTCGTTATCTGCTAGTGAATC 59.249 40.000 0.00 0.00 31.71 2.52
3813 3859 5.665459 AGCTTTCGTTATCTGCTAGTGAAT 58.335 37.500 0.00 0.00 31.71 2.57
3814 3860 5.073311 AGCTTTCGTTATCTGCTAGTGAA 57.927 39.130 0.00 0.00 31.71 3.18
3815 3861 4.157840 TGAGCTTTCGTTATCTGCTAGTGA 59.842 41.667 0.00 0.00 33.83 3.41
3816 3862 4.266502 GTGAGCTTTCGTTATCTGCTAGTG 59.733 45.833 0.00 0.00 33.83 2.74
3817 3863 4.082190 TGTGAGCTTTCGTTATCTGCTAGT 60.082 41.667 0.00 0.00 33.83 2.57
3818 3864 4.424626 TGTGAGCTTTCGTTATCTGCTAG 58.575 43.478 0.00 0.00 33.83 3.42
3819 3865 4.450082 TGTGAGCTTTCGTTATCTGCTA 57.550 40.909 0.00 0.00 33.83 3.49
3820 3866 3.319137 TGTGAGCTTTCGTTATCTGCT 57.681 42.857 0.00 0.00 36.63 4.24
3821 3867 4.404507 TTTGTGAGCTTTCGTTATCTGC 57.595 40.909 0.00 0.00 0.00 4.26
3822 3868 6.373779 ACATTTTGTGAGCTTTCGTTATCTG 58.626 36.000 0.00 0.00 0.00 2.90
3823 3869 6.560253 ACATTTTGTGAGCTTTCGTTATCT 57.440 33.333 0.00 0.00 0.00 1.98
3824 3870 7.739295 TCTACATTTTGTGAGCTTTCGTTATC 58.261 34.615 0.00 0.00 0.00 1.75
3825 3871 7.667043 TCTACATTTTGTGAGCTTTCGTTAT 57.333 32.000 0.00 0.00 0.00 1.89
3826 3872 7.349711 GTTCTACATTTTGTGAGCTTTCGTTA 58.650 34.615 0.00 0.00 0.00 3.18
3827 3873 6.199393 GTTCTACATTTTGTGAGCTTTCGTT 58.801 36.000 0.00 0.00 0.00 3.85
3828 3874 5.277828 GGTTCTACATTTTGTGAGCTTTCGT 60.278 40.000 0.00 0.00 0.00 3.85
3829 3875 5.147162 GGTTCTACATTTTGTGAGCTTTCG 58.853 41.667 0.00 0.00 0.00 3.46
3830 3876 6.072112 TGGTTCTACATTTTGTGAGCTTTC 57.928 37.500 0.00 0.00 0.00 2.62
3831 3877 6.265196 TCATGGTTCTACATTTTGTGAGCTTT 59.735 34.615 0.00 0.00 0.00 3.51
3832 3878 5.769662 TCATGGTTCTACATTTTGTGAGCTT 59.230 36.000 0.00 0.00 0.00 3.74
3833 3879 5.316167 TCATGGTTCTACATTTTGTGAGCT 58.684 37.500 0.00 0.00 0.00 4.09
3834 3880 5.627499 TCATGGTTCTACATTTTGTGAGC 57.373 39.130 0.00 0.00 0.00 4.26
3835 3881 6.969366 TGTTCATGGTTCTACATTTTGTGAG 58.031 36.000 0.00 0.00 0.00 3.51
3836 3882 6.770303 TCTGTTCATGGTTCTACATTTTGTGA 59.230 34.615 0.00 0.00 0.00 3.58
3837 3883 6.969366 TCTGTTCATGGTTCTACATTTTGTG 58.031 36.000 0.00 0.00 0.00 3.33
3838 3884 7.765695 ATCTGTTCATGGTTCTACATTTTGT 57.234 32.000 0.00 0.00 0.00 2.83
3841 3887 8.408601 GCATTATCTGTTCATGGTTCTACATTT 58.591 33.333 0.00 0.00 0.00 2.32
3842 3888 7.557358 TGCATTATCTGTTCATGGTTCTACATT 59.443 33.333 0.00 0.00 0.00 2.71
3843 3889 7.056006 TGCATTATCTGTTCATGGTTCTACAT 58.944 34.615 0.00 0.00 0.00 2.29
3844 3890 6.413892 TGCATTATCTGTTCATGGTTCTACA 58.586 36.000 0.00 0.00 0.00 2.74
3845 3891 6.925610 TGCATTATCTGTTCATGGTTCTAC 57.074 37.500 0.00 0.00 0.00 2.59
3846 3892 9.056005 GTTATGCATTATCTGTTCATGGTTCTA 57.944 33.333 3.54 0.00 0.00 2.10
3847 3893 7.557358 TGTTATGCATTATCTGTTCATGGTTCT 59.443 33.333 3.54 0.00 0.00 3.01
3848 3894 7.706159 TGTTATGCATTATCTGTTCATGGTTC 58.294 34.615 3.54 0.00 0.00 3.62
3849 3895 7.643569 TGTTATGCATTATCTGTTCATGGTT 57.356 32.000 3.54 0.00 0.00 3.67
3850 3896 7.643569 TTGTTATGCATTATCTGTTCATGGT 57.356 32.000 3.54 0.00 0.00 3.55
3851 3897 8.929827 TTTTGTTATGCATTATCTGTTCATGG 57.070 30.769 3.54 0.00 0.00 3.66
3854 3900 9.791820 CTGATTTTGTTATGCATTATCTGTTCA 57.208 29.630 3.54 1.11 0.00 3.18
3855 3901 9.793252 ACTGATTTTGTTATGCATTATCTGTTC 57.207 29.630 3.54 0.00 31.73 3.18
3908 3954 7.765695 AACAAGGAGAAAATAGCTCATTTGA 57.234 32.000 0.00 0.00 36.93 2.69
4048 4868 5.675684 ACAAAGAAAAACCTGTGTGGATT 57.324 34.783 0.00 0.00 33.56 3.01
4049 4869 5.046663 ACAACAAAGAAAAACCTGTGTGGAT 60.047 36.000 0.00 0.00 34.96 3.41
4050 4870 4.282195 ACAACAAAGAAAAACCTGTGTGGA 59.718 37.500 0.00 0.00 34.96 4.02
4052 4872 5.469479 AGACAACAAAGAAAAACCTGTGTG 58.531 37.500 0.00 0.00 34.96 3.82
4053 4873 5.242838 TGAGACAACAAAGAAAAACCTGTGT 59.757 36.000 0.00 0.00 36.22 3.72
4054 4874 5.708948 TGAGACAACAAAGAAAAACCTGTG 58.291 37.500 0.00 0.00 0.00 3.66
4056 4876 8.571336 AGATATGAGACAACAAAGAAAAACCTG 58.429 33.333 0.00 0.00 0.00 4.00
4057 4877 8.697507 AGATATGAGACAACAAAGAAAAACCT 57.302 30.769 0.00 0.00 0.00 3.50
4058 4878 8.567948 TGAGATATGAGACAACAAAGAAAAACC 58.432 33.333 0.00 0.00 0.00 3.27
4062 4882 7.388776 CCTGTGAGATATGAGACAACAAAGAAA 59.611 37.037 0.00 0.00 0.00 2.52
4063 4883 6.875726 CCTGTGAGATATGAGACAACAAAGAA 59.124 38.462 0.00 0.00 0.00 2.52
4066 4886 6.114187 ACCTGTGAGATATGAGACAACAAA 57.886 37.500 0.00 0.00 0.00 2.83
4068 4888 8.533569 TTATACCTGTGAGATATGAGACAACA 57.466 34.615 0.00 0.00 0.00 3.33
4069 4889 8.851145 TCTTATACCTGTGAGATATGAGACAAC 58.149 37.037 0.00 0.00 0.00 3.32
4070 4890 8.996651 TCTTATACCTGTGAGATATGAGACAA 57.003 34.615 0.00 0.00 0.00 3.18
4072 4892 8.856153 TCTCTTATACCTGTGAGATATGAGAC 57.144 38.462 0.00 0.00 31.53 3.36
4073 4893 8.106462 CCTCTCTTATACCTGTGAGATATGAGA 58.894 40.741 0.00 0.00 35.39 3.27
4075 4895 7.990055 TCCTCTCTTATACCTGTGAGATATGA 58.010 38.462 0.00 0.00 35.39 2.15
4076 4896 8.685427 CATCCTCTCTTATACCTGTGAGATATG 58.315 40.741 0.00 0.00 35.39 1.78
4081 4901 5.389520 TCCATCCTCTCTTATACCTGTGAG 58.610 45.833 0.00 0.00 0.00 3.51
4097 4926 2.771762 GGGCCAGCTCTCCATCCT 60.772 66.667 4.39 0.00 0.00 3.24
4114 4943 4.148838 TGGGACCCTCAATAAACAAACTG 58.851 43.478 13.00 0.00 0.00 3.16
4115 4944 4.141018 ACTGGGACCCTCAATAAACAAACT 60.141 41.667 13.00 0.00 0.00 2.66
4116 4945 4.149598 ACTGGGACCCTCAATAAACAAAC 58.850 43.478 13.00 0.00 0.00 2.93
4117 4946 4.463050 ACTGGGACCCTCAATAAACAAA 57.537 40.909 13.00 0.00 0.00 2.83
4118 4947 4.463050 AACTGGGACCCTCAATAAACAA 57.537 40.909 13.00 0.00 0.00 2.83
4119 4948 5.073965 ACTTAACTGGGACCCTCAATAAACA 59.926 40.000 13.00 0.00 0.00 2.83
4120 4949 5.567430 ACTTAACTGGGACCCTCAATAAAC 58.433 41.667 13.00 0.00 0.00 2.01
4121 4950 5.570034 CGACTTAACTGGGACCCTCAATAAA 60.570 44.000 13.00 0.00 0.00 1.40
4122 4951 4.081309 CGACTTAACTGGGACCCTCAATAA 60.081 45.833 13.00 5.42 0.00 1.40
4123 4952 3.449737 CGACTTAACTGGGACCCTCAATA 59.550 47.826 13.00 0.00 0.00 1.90
4124 4953 2.236395 CGACTTAACTGGGACCCTCAAT 59.764 50.000 13.00 0.00 0.00 2.57
4125 4954 1.621814 CGACTTAACTGGGACCCTCAA 59.378 52.381 13.00 0.00 0.00 3.02
4126 4955 1.203087 TCGACTTAACTGGGACCCTCA 60.203 52.381 13.00 0.00 0.00 3.86
4127 4956 1.477295 CTCGACTTAACTGGGACCCTC 59.523 57.143 13.00 0.00 0.00 4.30
4128 4957 1.558233 CTCGACTTAACTGGGACCCT 58.442 55.000 13.00 0.00 0.00 4.34
4129 4958 0.108281 GCTCGACTTAACTGGGACCC 60.108 60.000 2.45 2.45 0.00 4.46
4130 4959 0.458025 CGCTCGACTTAACTGGGACC 60.458 60.000 0.00 0.00 0.00 4.46
4131 4960 0.458025 CCGCTCGACTTAACTGGGAC 60.458 60.000 0.00 0.00 0.00 4.46
4132 4961 0.609957 TCCGCTCGACTTAACTGGGA 60.610 55.000 0.00 0.00 0.00 4.37
4133 4962 0.460311 ATCCGCTCGACTTAACTGGG 59.540 55.000 0.00 0.00 0.00 4.45
4134 4963 1.560923 CATCCGCTCGACTTAACTGG 58.439 55.000 0.00 0.00 0.00 4.00
4184 5043 3.446442 AGATATAAATGGGCTGGGCTG 57.554 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.