Multiple sequence alignment - TraesCS6B01G317200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G317200 chr6B 100.000 4924 0 0 1 4924 565196426 565201349 0.000000e+00 9094.0
1 TraesCS6B01G317200 chr6B 90.351 114 4 1 3647 3760 565199961 565200067 5.140000e-30 143.0
2 TraesCS6B01G317200 chr6B 90.351 114 4 1 3536 3642 565200072 565200185 5.140000e-30 143.0
3 TraesCS6B01G317200 chr6B 79.487 78 14 1 632 709 81674476 81674551 2.000000e-03 54.7
4 TraesCS6B01G317200 chr6D 95.002 2881 101 22 778 3641 378734586 378737440 0.000000e+00 4482.0
5 TraesCS6B01G317200 chr6D 91.061 716 59 3 1 712 378733859 378734573 0.000000e+00 963.0
6 TraesCS6B01G317200 chr6D 91.717 664 43 8 3647 4306 378737333 378737988 0.000000e+00 911.0
7 TraesCS6B01G317200 chr6D 90.291 206 10 7 4726 4924 378738803 378739005 1.360000e-65 261.0
8 TraesCS6B01G317200 chr6D 78.370 319 55 11 213 520 104573271 104573586 1.400000e-45 195.0
9 TraesCS6B01G317200 chr6A 94.837 2886 103 23 778 3641 520391639 520394500 0.000000e+00 4462.0
10 TraesCS6B01G317200 chr6A 90.629 747 41 10 3647 4388 520394393 520395115 0.000000e+00 965.0
11 TraesCS6B01G317200 chr6A 86.173 810 80 17 1 793 520390894 520391688 0.000000e+00 846.0
12 TraesCS6B01G317200 chr6A 98.561 139 2 0 4777 4915 520395295 520395433 3.810000e-61 246.0
13 TraesCS6B01G317200 chr3D 82.936 545 79 10 1 537 401901426 401900888 3.450000e-131 479.0
14 TraesCS6B01G317200 chr3D 83.648 477 71 6 1 473 169890074 169889601 4.520000e-120 442.0
15 TraesCS6B01G317200 chr7D 81.851 551 84 12 1 539 42383820 42383274 2.700000e-122 449.0
16 TraesCS6B01G317200 chr7D 82.200 500 76 9 8 497 42216967 42216471 7.620000e-113 418.0
17 TraesCS6B01G317200 chr5D 82.480 508 71 13 1 499 510130362 510129864 3.520000e-116 429.0
18 TraesCS6B01G317200 chr3A 83.158 475 74 4 1 473 207247036 207246566 3.520000e-116 429.0
19 TraesCS6B01G317200 chr3B 81.400 543 79 9 1 537 527663237 527662711 1.640000e-114 424.0
20 TraesCS6B01G317200 chr4B 80.545 550 94 10 1 539 83309550 83310097 1.280000e-110 411.0
21 TraesCS6B01G317200 chr4B 85.274 292 41 2 1303 1593 609612935 609612645 2.880000e-77 300.0
22 TraesCS6B01G317200 chr7B 83.893 298 47 1 1297 1593 667090113 667090410 2.900000e-72 283.0
23 TraesCS6B01G317200 chr2B 80.969 289 33 8 1305 1593 635072027 635072293 4.990000e-50 209.0
24 TraesCS6B01G317200 chr2B 84.416 77 12 0 632 708 239812603 239812527 5.290000e-10 76.8
25 TraesCS6B01G317200 chr2D 100.000 29 0 0 680 708 617208468 617208496 2.000000e-03 54.7
26 TraesCS6B01G317200 chr5B 100.000 28 0 0 684 711 633746876 633746903 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G317200 chr6B 565196426 565201349 4923 False 3126.666667 9094 93.567333 1 4924 3 chr6B.!!$F2 4923
1 TraesCS6B01G317200 chr6D 378733859 378739005 5146 False 1654.250000 4482 92.017750 1 4924 4 chr6D.!!$F2 4923
2 TraesCS6B01G317200 chr6A 520390894 520395433 4539 False 1629.750000 4462 92.550000 1 4915 4 chr6A.!!$F1 4914
3 TraesCS6B01G317200 chr3D 401900888 401901426 538 True 479.000000 479 82.936000 1 537 1 chr3D.!!$R2 536
4 TraesCS6B01G317200 chr7D 42383274 42383820 546 True 449.000000 449 81.851000 1 539 1 chr7D.!!$R2 538
5 TraesCS6B01G317200 chr3B 527662711 527663237 526 True 424.000000 424 81.400000 1 537 1 chr3B.!!$R1 536
6 TraesCS6B01G317200 chr4B 83309550 83310097 547 False 411.000000 411 80.545000 1 539 1 chr4B.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 651 0.391130 GTGCACCGCTCCAACATAGA 60.391 55.0 5.22 0.0 0.00 1.98 F
638 667 0.467474 TAGATGGACGATGAGCGGGT 60.467 55.0 0.00 0.0 46.49 5.28 F
1491 1525 0.873312 CGGAGATGTCTGATGTGCCG 60.873 60.0 0.00 0.0 0.00 5.69 F
2965 3014 0.321996 AAGTGAAAGCCGAGGAGGAC 59.678 55.0 0.00 0.0 45.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1496 0.599728 GACATCTCCGGCTCATCTGC 60.600 60.000 0.00 0.00 0.00 4.26 R
2025 2066 1.598130 GCGAACTGGACCAGCAGTT 60.598 57.895 21.95 9.39 43.47 3.16 R
3433 3483 1.268589 CCTCACATCGGTAGTAGCACG 60.269 57.143 0.00 0.00 0.00 5.34 R
4482 4549 0.106708 ACGGACATCAAGCACACACT 59.893 50.000 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.399644 TGACCCAAAAGGATACAAGGGAA 59.600 43.478 0.00 0.00 39.89 3.97
39 40 4.263949 CCCAAAAGGATACAAGGGAAGAGT 60.264 45.833 0.00 0.00 37.55 3.24
40 41 4.702131 CCAAAAGGATACAAGGGAAGAGTG 59.298 45.833 0.00 0.00 41.41 3.51
41 42 5.316987 CAAAAGGATACAAGGGAAGAGTGT 58.683 41.667 0.00 0.00 41.41 3.55
122 124 1.142465 AGATGGAGGCGAAGATGCAAT 59.858 47.619 0.00 0.00 36.28 3.56
150 152 2.317149 CTTGAGATGGAGGCCGGGAC 62.317 65.000 2.18 0.00 0.00 4.46
207 209 3.181476 GCCAAGACCAAAGCAAAAGAAGA 60.181 43.478 0.00 0.00 0.00 2.87
328 334 4.142447 ACATGCTCAAGCTTGATGATTGAC 60.142 41.667 28.57 13.02 44.88 3.18
431 442 3.604582 CAACCCATTTTTGTGTGTTGGT 58.395 40.909 0.00 0.00 34.95 3.67
440 451 2.340210 TGTGTGTTGGTATGTGTGCT 57.660 45.000 0.00 0.00 0.00 4.40
473 484 1.737236 GTGCGCCAACATGAACTATGA 59.263 47.619 4.18 0.00 39.21 2.15
531 550 2.261671 GCCGGCGAGAACTCTGAA 59.738 61.111 12.58 0.00 0.00 3.02
556 585 1.890979 CCACATGATCTCTGGCCGC 60.891 63.158 0.00 0.00 0.00 6.53
559 588 3.157252 ATGATCTCTGGCCGCGGT 61.157 61.111 28.70 3.94 0.00 5.68
561 590 3.838271 GATCTCTGGCCGCGGTCA 61.838 66.667 33.19 33.19 0.00 4.02
622 651 0.391130 GTGCACCGCTCCAACATAGA 60.391 55.000 5.22 0.00 0.00 1.98
623 652 0.541392 TGCACCGCTCCAACATAGAT 59.459 50.000 0.00 0.00 0.00 1.98
630 659 2.288457 CGCTCCAACATAGATGGACGAT 60.288 50.000 10.10 0.00 41.98 3.73
638 667 0.467474 TAGATGGACGATGAGCGGGT 60.467 55.000 0.00 0.00 46.49 5.28
679 708 4.335400 AAAACAAACGAAATGGGCATCT 57.665 36.364 0.00 0.00 0.00 2.90
680 709 3.302365 AACAAACGAAATGGGCATCTG 57.698 42.857 0.00 0.00 0.00 2.90
686 715 1.135024 CGAAATGGGCATCTGTTTGGG 60.135 52.381 0.00 0.00 0.00 4.12
688 717 2.028561 AATGGGCATCTGTTTGGGTT 57.971 45.000 0.00 0.00 0.00 4.11
730 759 2.047655 CTCGGCGTTGGGTAGCAA 60.048 61.111 6.85 0.00 34.54 3.91
781 814 9.965824 TGCCATTTAGAAAGAAAGAAAAACTAG 57.034 29.630 0.00 0.00 0.00 2.57
791 824 9.534565 AAAGAAAGAAAAACTAGAAAGGATTGC 57.465 29.630 0.00 0.00 0.00 3.56
792 825 7.661968 AGAAAGAAAAACTAGAAAGGATTGCC 58.338 34.615 0.00 0.00 0.00 4.52
793 826 6.976934 AAGAAAAACTAGAAAGGATTGCCA 57.023 33.333 0.00 0.00 36.29 4.92
794 827 7.544804 AAGAAAAACTAGAAAGGATTGCCAT 57.455 32.000 0.00 0.00 36.29 4.40
795 828 7.544804 AGAAAAACTAGAAAGGATTGCCATT 57.455 32.000 0.00 0.00 36.29 3.16
796 829 7.966812 AGAAAAACTAGAAAGGATTGCCATTT 58.033 30.769 0.00 0.00 36.29 2.32
797 830 9.088987 AGAAAAACTAGAAAGGATTGCCATTTA 57.911 29.630 0.00 0.00 36.29 1.40
798 831 9.358872 GAAAAACTAGAAAGGATTGCCATTTAG 57.641 33.333 0.00 0.00 36.29 1.85
799 832 8.650143 AAAACTAGAAAGGATTGCCATTTAGA 57.350 30.769 0.00 0.00 36.29 2.10
800 833 8.650143 AAACTAGAAAGGATTGCCATTTAGAA 57.350 30.769 0.00 0.00 36.29 2.10
801 834 8.650143 AACTAGAAAGGATTGCCATTTAGAAA 57.350 30.769 0.00 0.00 36.29 2.52
802 835 8.286191 ACTAGAAAGGATTGCCATTTAGAAAG 57.714 34.615 0.00 0.00 36.29 2.62
803 836 8.109634 ACTAGAAAGGATTGCCATTTAGAAAGA 58.890 33.333 0.00 0.00 36.29 2.52
804 837 7.781324 AGAAAGGATTGCCATTTAGAAAGAA 57.219 32.000 0.00 0.00 36.29 2.52
805 838 8.193953 AGAAAGGATTGCCATTTAGAAAGAAA 57.806 30.769 0.00 0.00 36.29 2.52
806 839 8.309656 AGAAAGGATTGCCATTTAGAAAGAAAG 58.690 33.333 0.00 0.00 36.29 2.62
813 846 9.836864 ATTGCCATTTAGAAAGAAAGAAAAACT 57.163 25.926 0.00 0.00 0.00 2.66
886 920 8.930846 AAATATCCAATATCTTCCCACTTCTG 57.069 34.615 0.00 0.00 0.00 3.02
1445 1479 1.069204 GAGGCGCTGGATTGACTGATA 59.931 52.381 7.64 0.00 0.00 2.15
1455 1489 7.307396 CGCTGGATTGACTGATAATACGATTTT 60.307 37.037 0.00 0.00 0.00 1.82
1456 1490 7.800380 GCTGGATTGACTGATAATACGATTTTG 59.200 37.037 0.00 0.00 0.00 2.44
1462 1496 5.806286 ACTGATAATACGATTTTGGTTGCG 58.194 37.500 0.00 0.00 0.00 4.85
1491 1525 0.873312 CGGAGATGTCTGATGTGCCG 60.873 60.000 0.00 0.00 0.00 5.69
1807 1847 9.334947 AGTGATTGTTATTCTGGACAATAGATG 57.665 33.333 2.09 0.00 44.17 2.90
1822 1862 7.201821 GGACAATAGATGGATTTTCGATTGGTT 60.202 37.037 10.02 0.00 39.24 3.67
1849 1889 4.498345 CGGTTAGAGGCTTAGAGCTAACTG 60.498 50.000 17.45 15.76 41.99 3.16
1894 1935 2.039746 TCAACACTCGGGGAATGTCAAT 59.960 45.455 0.00 0.00 0.00 2.57
1939 1980 7.978982 ACTTTGCATGAATCAGAATGTACTAC 58.021 34.615 0.00 0.00 37.40 2.73
1940 1981 7.826252 ACTTTGCATGAATCAGAATGTACTACT 59.174 33.333 0.00 0.00 37.40 2.57
1941 1982 9.317936 CTTTGCATGAATCAGAATGTACTACTA 57.682 33.333 0.00 0.00 37.40 1.82
2025 2066 8.894731 TGTTCTGTTATTTGTTGCTACAAGTTA 58.105 29.630 13.56 7.73 44.56 2.24
2093 2134 6.740944 TTATCCTGTTAGCCTGCATACTAA 57.259 37.500 4.84 4.84 0.00 2.24
2129 2170 6.939730 TGAGTCTCTAATGTTGTATTTTGGCA 59.060 34.615 0.65 0.00 0.00 4.92
2226 2267 2.380084 AGAGCGTAAATTCTGGCGAA 57.620 45.000 0.00 0.00 0.00 4.70
2291 2332 7.815068 GTCTTCTACTCTTCTTGCTTCATGTTA 59.185 37.037 0.00 0.00 0.00 2.41
2342 2384 1.146774 TGGTCATTGGTCAACATGGGT 59.853 47.619 0.00 0.00 0.00 4.51
2382 2424 6.241207 ACGTTTGTCTTAACAGAATGGATG 57.759 37.500 0.00 0.00 43.62 3.51
2406 2448 0.609662 ATTGCCACATTTGCCACCTC 59.390 50.000 0.00 0.00 0.00 3.85
2407 2449 0.469705 TTGCCACATTTGCCACCTCT 60.470 50.000 0.00 0.00 0.00 3.69
2474 2516 8.985315 AGATATTCTGCCAGAATTATTTGTCA 57.015 30.769 23.95 5.09 41.90 3.58
2519 2562 4.202503 ACCTGTAGGATCTTGCATATTGGG 60.203 45.833 4.64 0.00 38.94 4.12
2523 2566 6.005823 TGTAGGATCTTGCATATTGGGATTG 58.994 40.000 0.00 0.00 0.00 2.67
2599 2642 4.819630 TCGCACTTGTTGAAGGAACTAAAT 59.180 37.500 0.00 0.00 38.49 1.40
2658 2703 7.397221 AGTCTGTGAAATTCCATGATTCAGTA 58.603 34.615 0.00 0.00 34.02 2.74
2720 2765 7.651304 TGTTACAAGCAGTGATTATTTGGTTTG 59.349 33.333 0.00 0.00 30.85 2.93
2723 2768 6.701400 ACAAGCAGTGATTATTTGGTTTGTTC 59.299 34.615 0.00 0.00 30.85 3.18
2724 2769 5.783111 AGCAGTGATTATTTGGTTTGTTCC 58.217 37.500 0.00 0.00 0.00 3.62
2725 2770 5.304101 AGCAGTGATTATTTGGTTTGTTCCA 59.696 36.000 0.00 0.00 35.49 3.53
2789 2838 5.012354 ACCAGGGTCGATGTTTTTCTAGTTA 59.988 40.000 0.00 0.00 0.00 2.24
2794 2843 6.183360 GGGTCGATGTTTTTCTAGTTAAGCTC 60.183 42.308 0.00 0.00 0.00 4.09
2887 2936 6.136857 AGGCACTAGTGTTGATCCTCTATAA 58.863 40.000 23.44 0.00 36.02 0.98
2965 3014 0.321996 AAGTGAAAGCCGAGGAGGAC 59.678 55.000 0.00 0.00 45.00 3.85
3143 3192 5.452917 GGTCCTGGTACGCTATTCATTTACT 60.453 44.000 0.00 0.00 0.00 2.24
3235 3285 2.037136 ACTTGCAGATGCTGGCGAC 61.037 57.895 6.35 0.00 42.66 5.19
3243 3293 1.563435 GATGCTGGCGACGATGATGG 61.563 60.000 0.00 0.00 0.00 3.51
3302 3352 2.861147 AAGTACACCTGCTTCCCTTC 57.139 50.000 0.00 0.00 0.00 3.46
3328 3378 0.460311 ATACCGTCACTAGCCACAGC 59.540 55.000 0.00 0.00 40.32 4.40
3433 3483 7.214467 TGTACATTTGGAATTCCTTGTTCTC 57.786 36.000 24.73 16.65 36.82 2.87
3445 3495 2.516923 CTTGTTCTCGTGCTACTACCG 58.483 52.381 0.00 0.00 0.00 4.02
3471 3521 5.045651 TGTGAGGTGTGGTGATCATTCTATT 60.046 40.000 0.00 0.00 0.00 1.73
3473 3523 5.045651 TGAGGTGTGGTGATCATTCTATTGT 60.046 40.000 0.00 0.00 0.00 2.71
3508 3564 5.312895 TCTTGTTATGCTGTGGTGTACAAT 58.687 37.500 0.00 0.00 39.20 2.71
3526 3584 4.317488 ACAATAAAAGCATTTGCAGGTGG 58.683 39.130 5.20 0.00 45.16 4.61
3582 3640 2.532250 CCTTAGTGGGGGCTTGAATT 57.468 50.000 0.00 0.00 0.00 2.17
3583 3641 2.102578 CCTTAGTGGGGGCTTGAATTG 58.897 52.381 0.00 0.00 0.00 2.32
3584 3642 2.291540 CCTTAGTGGGGGCTTGAATTGA 60.292 50.000 0.00 0.00 0.00 2.57
3585 3643 3.430453 CTTAGTGGGGGCTTGAATTGAA 58.570 45.455 0.00 0.00 0.00 2.69
3586 3644 2.629017 AGTGGGGGCTTGAATTGAAT 57.371 45.000 0.00 0.00 0.00 2.57
3587 3645 2.460669 AGTGGGGGCTTGAATTGAATC 58.539 47.619 0.00 0.00 0.00 2.52
3588 3646 2.043526 AGTGGGGGCTTGAATTGAATCT 59.956 45.455 0.00 0.00 0.00 2.40
3589 3647 3.269381 AGTGGGGGCTTGAATTGAATCTA 59.731 43.478 0.00 0.00 0.00 1.98
3590 3648 4.078980 AGTGGGGGCTTGAATTGAATCTAT 60.079 41.667 0.00 0.00 0.00 1.98
3591 3649 4.651045 GTGGGGGCTTGAATTGAATCTATT 59.349 41.667 0.00 0.00 0.00 1.73
3592 3650 4.650588 TGGGGGCTTGAATTGAATCTATTG 59.349 41.667 0.00 0.00 0.00 1.90
3593 3651 4.502087 GGGGGCTTGAATTGAATCTATTGC 60.502 45.833 0.00 0.00 0.00 3.56
3594 3652 4.343239 GGGGCTTGAATTGAATCTATTGCT 59.657 41.667 0.00 0.00 0.00 3.91
3595 3653 5.163374 GGGGCTTGAATTGAATCTATTGCTT 60.163 40.000 0.00 0.00 0.00 3.91
3596 3654 6.343703 GGGCTTGAATTGAATCTATTGCTTT 58.656 36.000 0.00 0.00 0.00 3.51
3597 3655 6.257193 GGGCTTGAATTGAATCTATTGCTTTG 59.743 38.462 0.00 0.00 0.00 2.77
3598 3656 6.257193 GGCTTGAATTGAATCTATTGCTTTGG 59.743 38.462 0.00 0.00 0.00 3.28
3599 3657 7.037438 GCTTGAATTGAATCTATTGCTTTGGA 58.963 34.615 0.00 0.00 0.00 3.53
3600 3658 7.546667 GCTTGAATTGAATCTATTGCTTTGGAA 59.453 33.333 0.00 0.00 0.00 3.53
3601 3659 8.991243 TTGAATTGAATCTATTGCTTTGGAAG 57.009 30.769 0.00 0.00 0.00 3.46
3620 3678 2.301577 GCTTAGTGCTCTACCACCAG 57.698 55.000 0.00 0.00 38.95 4.00
3621 3679 1.134670 GCTTAGTGCTCTACCACCAGG 60.135 57.143 0.00 0.00 38.83 4.45
3622 3680 0.902531 TTAGTGCTCTACCACCAGGC 59.097 55.000 0.00 0.00 39.06 4.85
3623 3681 0.041238 TAGTGCTCTACCACCAGGCT 59.959 55.000 0.00 0.00 39.06 4.58
3624 3682 0.041238 AGTGCTCTACCACCAGGCTA 59.959 55.000 0.00 0.00 39.06 3.93
3625 3683 1.123928 GTGCTCTACCACCAGGCTAT 58.876 55.000 0.00 0.00 39.06 2.97
3626 3684 1.486726 GTGCTCTACCACCAGGCTATT 59.513 52.381 0.00 0.00 39.06 1.73
3627 3685 2.092914 GTGCTCTACCACCAGGCTATTT 60.093 50.000 0.00 0.00 39.06 1.40
3628 3686 3.134081 GTGCTCTACCACCAGGCTATTTA 59.866 47.826 0.00 0.00 39.06 1.40
3629 3687 3.388024 TGCTCTACCACCAGGCTATTTAG 59.612 47.826 0.00 0.00 39.06 1.85
3630 3688 3.244249 GCTCTACCACCAGGCTATTTAGG 60.244 52.174 0.00 0.00 39.06 2.69
3631 3689 3.967987 CTCTACCACCAGGCTATTTAGGT 59.032 47.826 0.00 0.00 39.06 3.08
3635 3693 2.919228 CACCAGGCTATTTAGGTGTCC 58.081 52.381 11.70 0.00 44.95 4.02
3636 3694 1.844497 ACCAGGCTATTTAGGTGTCCC 59.156 52.381 0.00 0.00 32.04 4.46
3637 3695 2.127708 CCAGGCTATTTAGGTGTCCCT 58.872 52.381 0.00 0.00 45.51 4.20
3638 3696 2.509964 CCAGGCTATTTAGGTGTCCCTT 59.490 50.000 0.00 0.00 42.66 3.95
3639 3697 3.545703 CAGGCTATTTAGGTGTCCCTTG 58.454 50.000 0.00 0.00 42.66 3.61
3640 3698 3.199946 CAGGCTATTTAGGTGTCCCTTGA 59.800 47.826 0.00 0.00 42.66 3.02
3641 3699 3.850173 AGGCTATTTAGGTGTCCCTTGAA 59.150 43.478 0.00 0.00 42.66 2.69
3642 3700 4.478686 AGGCTATTTAGGTGTCCCTTGAAT 59.521 41.667 0.00 0.00 42.66 2.57
3643 3701 5.044105 AGGCTATTTAGGTGTCCCTTGAATT 60.044 40.000 0.00 0.00 42.66 2.17
3644 3702 5.067805 GGCTATTTAGGTGTCCCTTGAATTG 59.932 44.000 0.00 0.00 42.66 2.32
3645 3703 5.885912 GCTATTTAGGTGTCCCTTGAATTGA 59.114 40.000 0.00 0.00 42.66 2.57
3646 3704 6.377146 GCTATTTAGGTGTCCCTTGAATTGAA 59.623 38.462 0.00 0.00 42.66 2.69
3647 3705 7.068716 GCTATTTAGGTGTCCCTTGAATTGAAT 59.931 37.037 0.00 0.00 42.66 2.57
3648 3706 6.834168 TTTAGGTGTCCCTTGAATTGAATC 57.166 37.500 0.00 0.00 42.66 2.52
3649 3707 4.664688 AGGTGTCCCTTGAATTGAATCT 57.335 40.909 0.00 0.00 38.13 2.40
3650 3708 5.003096 AGGTGTCCCTTGAATTGAATCTT 57.997 39.130 0.00 0.00 38.13 2.40
3651 3709 5.397360 AGGTGTCCCTTGAATTGAATCTTT 58.603 37.500 0.00 0.00 38.13 2.52
3652 3710 5.244626 AGGTGTCCCTTGAATTGAATCTTTG 59.755 40.000 0.00 0.00 38.13 2.77
3653 3711 5.243730 GGTGTCCCTTGAATTGAATCTTTGA 59.756 40.000 0.00 0.00 0.00 2.69
3654 3712 6.152379 GTGTCCCTTGAATTGAATCTTTGAC 58.848 40.000 0.00 0.00 0.00 3.18
3655 3713 6.015940 GTGTCCCTTGAATTGAATCTTTGACT 60.016 38.462 0.00 0.00 0.00 3.41
3656 3714 6.550854 TGTCCCTTGAATTGAATCTTTGACTT 59.449 34.615 0.00 0.00 0.00 3.01
3657 3715 7.087007 GTCCCTTGAATTGAATCTTTGACTTC 58.913 38.462 0.00 0.00 0.00 3.01
3658 3716 6.209391 TCCCTTGAATTGAATCTTTGACTTCC 59.791 38.462 0.00 0.00 0.00 3.46
3659 3717 6.015180 CCCTTGAATTGAATCTTTGACTTCCA 60.015 38.462 0.00 0.00 0.00 3.53
3660 3718 7.088905 CCTTGAATTGAATCTTTGACTTCCAG 58.911 38.462 0.00 0.00 0.00 3.86
3661 3719 7.040201 CCTTGAATTGAATCTTTGACTTCCAGA 60.040 37.037 0.00 0.00 0.00 3.86
3662 3720 8.413309 TTGAATTGAATCTTTGACTTCCAGAT 57.587 30.769 0.00 0.00 0.00 2.90
3663 3721 8.413309 TGAATTGAATCTTTGACTTCCAGATT 57.587 30.769 0.00 0.00 39.49 2.40
3664 3722 9.519191 TGAATTGAATCTTTGACTTCCAGATTA 57.481 29.630 0.00 0.00 37.38 1.75
3665 3723 9.780413 GAATTGAATCTTTGACTTCCAGATTAC 57.220 33.333 0.00 0.00 37.38 1.89
3666 3724 9.525826 AATTGAATCTTTGACTTCCAGATTACT 57.474 29.630 0.00 0.00 37.38 2.24
3667 3725 7.912056 TGAATCTTTGACTTCCAGATTACTG 57.088 36.000 0.00 0.00 37.38 2.74
3668 3726 6.372659 TGAATCTTTGACTTCCAGATTACTGC 59.627 38.462 0.00 0.00 42.25 4.40
3669 3727 5.489792 TCTTTGACTTCCAGATTACTGCT 57.510 39.130 0.00 0.00 42.25 4.24
3670 3728 5.482908 TCTTTGACTTCCAGATTACTGCTC 58.517 41.667 0.00 0.00 42.25 4.26
3671 3729 3.510388 TGACTTCCAGATTACTGCTCG 57.490 47.619 0.00 0.00 42.25 5.03
3672 3730 3.089284 TGACTTCCAGATTACTGCTCGA 58.911 45.455 0.00 0.00 42.25 4.04
3673 3731 3.119459 TGACTTCCAGATTACTGCTCGAC 60.119 47.826 0.00 0.00 42.25 4.20
3674 3732 2.166664 ACTTCCAGATTACTGCTCGACC 59.833 50.000 0.00 0.00 42.25 4.79
3675 3733 1.112113 TCCAGATTACTGCTCGACCC 58.888 55.000 0.00 0.00 42.25 4.46
3676 3734 1.115467 CCAGATTACTGCTCGACCCT 58.885 55.000 0.00 0.00 42.25 4.34
3677 3735 1.482593 CCAGATTACTGCTCGACCCTT 59.517 52.381 0.00 0.00 42.25 3.95
3678 3736 2.693591 CCAGATTACTGCTCGACCCTTA 59.306 50.000 0.00 0.00 42.25 2.69
3679 3737 3.243569 CCAGATTACTGCTCGACCCTTAG 60.244 52.174 0.00 0.00 42.25 2.18
3680 3738 3.381908 CAGATTACTGCTCGACCCTTAGT 59.618 47.826 0.00 0.00 37.33 2.24
3681 3739 3.381908 AGATTACTGCTCGACCCTTAGTG 59.618 47.826 0.00 0.00 0.00 2.74
3682 3740 1.471119 TACTGCTCGACCCTTAGTGG 58.529 55.000 0.00 0.00 0.00 4.00
3742 3800 2.239681 AGTGCTCTACCACTAGGCTT 57.760 50.000 0.00 0.00 43.86 4.35
3759 3817 2.039879 GGCTTCTTAGGTGTCCCTTGAA 59.960 50.000 0.00 0.00 42.66 2.69
3763 3821 3.686016 TCTTAGGTGTCCCTTGAAATGC 58.314 45.455 0.00 0.00 42.66 3.56
3778 3836 4.650734 TGAAATGCTGTGTATCACTTCCA 58.349 39.130 1.72 0.00 35.11 3.53
3787 3845 4.754618 TGTGTATCACTTCCATGTGTGTTC 59.245 41.667 9.50 4.42 38.90 3.18
3797 3855 2.741517 CCATGTGTGTTCGACATGCTTA 59.258 45.455 8.30 0.00 46.30 3.09
3878 3936 1.761784 CTGCAGGGCTTAGAGAGTGAT 59.238 52.381 5.57 0.00 0.00 3.06
3929 3987 4.798924 GCGAAGGAGTTGCTCTGATCATAT 60.799 45.833 0.00 0.00 0.00 1.78
3952 4010 1.067821 GATGCCTTCCCGAGTCTACAG 59.932 57.143 0.00 0.00 0.00 2.74
3960 4018 1.686355 CCGAGTCTACAGAGATGGCT 58.314 55.000 0.00 0.00 33.14 4.75
3981 4039 1.089112 TGATGTTGATGAAGGCGCTG 58.911 50.000 7.64 0.00 0.00 5.18
4103 4161 2.627933 AGAAAACTGGTACCCCTGCTA 58.372 47.619 10.07 0.00 33.14 3.49
4243 4301 4.158394 TCCATTTTTATTCTGCACTGAGGC 59.842 41.667 0.00 0.00 0.00 4.70
4244 4302 4.159135 CCATTTTTATTCTGCACTGAGGCT 59.841 41.667 0.00 0.00 34.04 4.58
4258 4316 3.540211 AGGCTGATCCTTGTTGTCG 57.460 52.632 0.00 0.00 44.75 4.35
4262 4320 1.129437 GCTGATCCTTGTTGTCGAAGC 59.871 52.381 0.00 0.00 0.00 3.86
4286 4347 6.140110 CGACCATAGTGTTTTTGTTCGAATT 58.860 36.000 0.00 0.00 0.00 2.17
4295 4356 7.812669 AGTGTTTTTGTTCGAATTGAAAGAGTT 59.187 29.630 0.00 0.00 38.60 3.01
4311 4372 7.414436 TGAAAGAGTTTGTAAAACTTCCATCG 58.586 34.615 6.81 0.00 0.00 3.84
4331 4392 8.040727 TCCATCGAAAACTCTCAAATATGAAGA 58.959 33.333 0.00 0.00 34.49 2.87
4336 4401 7.254932 CGAAAACTCTCAAATATGAAGATCCCC 60.255 40.741 0.00 0.00 34.49 4.81
4337 4402 6.838401 AACTCTCAAATATGAAGATCCCCT 57.162 37.500 0.00 0.00 34.49 4.79
4359 4426 6.873605 CCCTGTTTCCCAAATAAAATCTTCAC 59.126 38.462 0.00 0.00 0.00 3.18
4388 4455 0.741915 TTGGCAAAAACTGACGGACC 59.258 50.000 0.00 0.00 34.74 4.46
4389 4456 1.281656 GGCAAAAACTGACGGACCG 59.718 57.895 13.61 13.61 0.00 4.79
4391 4458 1.281656 CAAAAACTGACGGACCGGC 59.718 57.895 20.00 17.50 34.27 6.13
4392 4459 2.248835 AAAAACTGACGGACCGGCG 61.249 57.895 20.00 14.19 37.93 6.46
4393 4460 2.928642 AAAAACTGACGGACCGGCGT 62.929 55.000 20.00 14.89 37.93 5.68
4394 4461 2.928642 AAAACTGACGGACCGGCGTT 62.929 55.000 20.00 19.83 37.93 4.84
4395 4462 2.928642 AAACTGACGGACCGGCGTTT 62.929 55.000 26.38 26.38 37.93 3.60
4396 4463 2.663852 CTGACGGACCGGCGTTTT 60.664 61.111 20.00 0.00 37.93 2.43
4398 4465 3.719144 GACGGACCGGCGTTTTGG 61.719 66.667 20.00 0.00 0.00 3.28
4401 4468 3.733960 GGACCGGCGTTTTGGCTC 61.734 66.667 6.01 0.00 42.02 4.70
4402 4469 3.733960 GACCGGCGTTTTGGCTCC 61.734 66.667 6.01 0.00 42.02 4.70
4416 4483 2.693864 CTCCCAGGCCCCAGACAT 60.694 66.667 0.00 0.00 0.00 3.06
4421 4488 0.331278 CCAGGCCCCAGACATAAACA 59.669 55.000 0.00 0.00 0.00 2.83
4422 4489 1.683011 CCAGGCCCCAGACATAAACAG 60.683 57.143 0.00 0.00 0.00 3.16
4423 4490 1.004745 CAGGCCCCAGACATAAACAGT 59.995 52.381 0.00 0.00 0.00 3.55
4424 4491 2.238646 CAGGCCCCAGACATAAACAGTA 59.761 50.000 0.00 0.00 0.00 2.74
4425 4492 2.916934 AGGCCCCAGACATAAACAGTAA 59.083 45.455 0.00 0.00 0.00 2.24
4426 4493 3.527665 AGGCCCCAGACATAAACAGTAAT 59.472 43.478 0.00 0.00 0.00 1.89
4430 4497 6.296026 GCCCCAGACATAAACAGTAATATCA 58.704 40.000 0.00 0.00 0.00 2.15
4432 4499 7.509546 CCCCAGACATAAACAGTAATATCACT 58.490 38.462 0.00 0.00 0.00 3.41
4450 4517 8.970691 ATATCACTGAAAATAGCAACAACAAC 57.029 30.769 0.00 0.00 0.00 3.32
4451 4518 6.201226 TCACTGAAAATAGCAACAACAACA 57.799 33.333 0.00 0.00 0.00 3.33
4452 4519 6.625362 TCACTGAAAATAGCAACAACAACAA 58.375 32.000 0.00 0.00 0.00 2.83
4481 4548 8.519492 AACGAATTATTTTGTGGTGAAAGATG 57.481 30.769 0.00 0.00 29.55 2.90
4482 4549 7.881142 ACGAATTATTTTGTGGTGAAAGATGA 58.119 30.769 0.00 0.00 0.00 2.92
4486 4553 7.581213 TTATTTTGTGGTGAAAGATGAGTGT 57.419 32.000 0.00 0.00 0.00 3.55
4498 4565 3.332919 AGATGAGTGTGTGCTTGATGTC 58.667 45.455 0.00 0.00 0.00 3.06
4499 4566 1.882912 TGAGTGTGTGCTTGATGTCC 58.117 50.000 0.00 0.00 0.00 4.02
4501 4568 0.106708 AGTGTGTGCTTGATGTCCGT 59.893 50.000 0.00 0.00 0.00 4.69
4509 4576 1.733389 GCTTGATGTCCGTGCCAAATG 60.733 52.381 0.00 0.00 0.00 2.32
4513 4580 1.745087 GATGTCCGTGCCAAATGTGAT 59.255 47.619 0.00 0.00 0.00 3.06
4514 4581 0.880441 TGTCCGTGCCAAATGTGATG 59.120 50.000 0.00 0.00 0.00 3.07
4515 4582 1.164411 GTCCGTGCCAAATGTGATGA 58.836 50.000 0.00 0.00 0.00 2.92
4516 4583 1.539388 GTCCGTGCCAAATGTGATGAA 59.461 47.619 0.00 0.00 0.00 2.57
4528 4595 6.642131 CCAAATGTGATGAAGTTTCGACATTT 59.358 34.615 16.01 16.01 40.65 2.32
4529 4596 7.358600 CCAAATGTGATGAAGTTTCGACATTTG 60.359 37.037 26.55 26.55 46.11 2.32
4530 4597 6.558771 ATGTGATGAAGTTTCGACATTTGA 57.441 33.333 0.00 0.00 0.00 2.69
4533 4600 6.259829 TGTGATGAAGTTTCGACATTTGAAGA 59.740 34.615 0.00 0.00 0.00 2.87
4534 4601 6.794158 GTGATGAAGTTTCGACATTTGAAGAG 59.206 38.462 0.00 0.00 0.00 2.85
4535 4602 5.095691 TGAAGTTTCGACATTTGAAGAGC 57.904 39.130 0.00 0.00 0.00 4.09
4536 4603 4.816385 TGAAGTTTCGACATTTGAAGAGCT 59.184 37.500 0.00 0.00 0.00 4.09
4537 4604 4.999751 AGTTTCGACATTTGAAGAGCTC 57.000 40.909 5.27 5.27 0.00 4.09
4538 4605 4.636249 AGTTTCGACATTTGAAGAGCTCT 58.364 39.130 11.45 11.45 0.00 4.09
4539 4606 4.688413 AGTTTCGACATTTGAAGAGCTCTC 59.312 41.667 18.55 11.21 0.00 3.20
4540 4607 3.942130 TCGACATTTGAAGAGCTCTCA 57.058 42.857 18.55 13.76 0.00 3.27
4541 4608 4.257267 TCGACATTTGAAGAGCTCTCAA 57.743 40.909 18.55 18.64 0.00 3.02
4542 4609 3.990469 TCGACATTTGAAGAGCTCTCAAC 59.010 43.478 18.55 12.15 0.00 3.18
4543 4610 3.742882 CGACATTTGAAGAGCTCTCAACA 59.257 43.478 18.55 14.61 0.00 3.33
4544 4611 4.212004 CGACATTTGAAGAGCTCTCAACAA 59.788 41.667 18.55 19.29 0.00 2.83
4545 4612 5.277490 CGACATTTGAAGAGCTCTCAACAAA 60.277 40.000 28.50 28.50 39.27 2.83
4547 4614 6.866480 ACATTTGAAGAGCTCTCAACAAAAA 58.134 32.000 29.29 19.36 38.84 1.94
4548 4615 6.753744 ACATTTGAAGAGCTCTCAACAAAAAC 59.246 34.615 29.29 12.63 38.84 2.43
4561 4628 8.795786 TCTCAACAAAAACGATAAAATTCAGG 57.204 30.769 0.00 0.00 0.00 3.86
4566 4633 3.782889 AACGATAAAATTCAGGCCTGC 57.217 42.857 28.91 10.26 0.00 4.85
4571 4638 1.909700 AAAATTCAGGCCTGCGAGAA 58.090 45.000 28.91 17.33 0.00 2.87
4579 4646 0.951558 GGCCTGCGAGAAAGTTTGAA 59.048 50.000 0.00 0.00 0.00 2.69
4580 4647 1.336755 GGCCTGCGAGAAAGTTTGAAA 59.663 47.619 0.00 0.00 0.00 2.69
4584 4651 4.557496 GCCTGCGAGAAAGTTTGAAATTCT 60.557 41.667 0.00 0.00 36.17 2.40
4585 4652 5.523369 CCTGCGAGAAAGTTTGAAATTCTT 58.477 37.500 0.00 0.00 33.73 2.52
4586 4653 6.668323 CCTGCGAGAAAGTTTGAAATTCTTA 58.332 36.000 0.00 0.00 33.73 2.10
4587 4654 7.138736 CCTGCGAGAAAGTTTGAAATTCTTAA 58.861 34.615 0.00 0.00 33.73 1.85
4588 4655 7.647715 CCTGCGAGAAAGTTTGAAATTCTTAAA 59.352 33.333 0.00 0.00 33.73 1.52
4590 4657 8.188139 TGCGAGAAAGTTTGAAATTCTTAAAGT 58.812 29.630 0.00 0.00 33.73 2.66
4591 4658 9.659830 GCGAGAAAGTTTGAAATTCTTAAAGTA 57.340 29.630 0.00 0.00 33.73 2.24
4633 4700 9.982651 ATATCGAATACTGTAGCACTATTTGTT 57.017 29.630 0.00 0.00 0.00 2.83
4648 4715 9.708222 GCACTATTTGTTAAGACACTATTGATG 57.292 33.333 0.00 0.00 34.98 3.07
4655 4722 8.201554 TGTTAAGACACTATTGATGATTCTGC 57.798 34.615 0.00 0.00 0.00 4.26
4658 5180 5.423015 AGACACTATTGATGATTCTGCGTT 58.577 37.500 0.00 0.00 0.00 4.84
4671 5194 2.101380 GCGTTGCAACCACGTTGT 59.899 55.556 23.42 0.00 44.40 3.32
4673 5196 1.719117 CGTTGCAACCACGTTGTCT 59.281 52.632 23.42 0.00 44.40 3.41
4688 5211 2.839026 GTTGTCTCGACGACTACAATCG 59.161 50.000 18.72 0.00 44.41 3.34
4689 5212 2.340337 TGTCTCGACGACTACAATCGA 58.660 47.619 13.65 0.00 45.13 3.59
4709 5236 9.611284 CAATCGAGTTTGAACATTTGAGATTAA 57.389 29.630 0.00 0.00 0.00 1.40
4710 5237 9.612620 AATCGAGTTTGAACATTTGAGATTAAC 57.387 29.630 0.00 0.00 0.00 2.01
4712 5239 8.616942 TCGAGTTTGAACATTTGAGATTAACAA 58.383 29.630 0.00 0.00 0.00 2.83
4713 5240 9.398170 CGAGTTTGAACATTTGAGATTAACAAT 57.602 29.630 0.00 0.00 0.00 2.71
4726 5253 9.573166 TTGAGATTAACAATTAGGTATGGATGG 57.427 33.333 0.00 0.00 0.00 3.51
4727 5254 7.665559 TGAGATTAACAATTAGGTATGGATGGC 59.334 37.037 0.00 0.00 0.00 4.40
4728 5255 7.526041 AGATTAACAATTAGGTATGGATGGCA 58.474 34.615 0.00 0.00 0.00 4.92
4729 5256 8.004215 AGATTAACAATTAGGTATGGATGGCAA 58.996 33.333 0.00 0.00 0.00 4.52
4730 5257 5.852282 AACAATTAGGTATGGATGGCAAC 57.148 39.130 0.00 0.00 0.00 4.17
4731 5258 4.215109 ACAATTAGGTATGGATGGCAACC 58.785 43.478 6.88 6.88 0.00 3.77
4732 5259 4.214310 CAATTAGGTATGGATGGCAACCA 58.786 43.478 19.40 19.40 41.83 3.67
4734 5261 2.369983 AGGTATGGATGGCAACCATG 57.630 50.000 32.37 0.00 45.26 3.66
4735 5262 1.570501 AGGTATGGATGGCAACCATGT 59.429 47.619 32.37 17.68 45.26 3.21
4736 5263 2.024080 AGGTATGGATGGCAACCATGTT 60.024 45.455 32.37 17.96 45.26 2.71
4737 5264 3.204158 AGGTATGGATGGCAACCATGTTA 59.796 43.478 32.37 15.17 45.26 2.41
4738 5265 4.140947 AGGTATGGATGGCAACCATGTTAT 60.141 41.667 32.37 16.52 45.26 1.89
4739 5266 4.218417 GGTATGGATGGCAACCATGTTATC 59.782 45.833 32.37 14.54 45.26 1.75
4740 5267 3.378861 TGGATGGCAACCATGTTATCA 57.621 42.857 13.03 0.00 45.26 2.15
4741 5268 3.023119 TGGATGGCAACCATGTTATCAC 58.977 45.455 13.03 0.00 45.26 3.06
4742 5269 2.033299 GGATGGCAACCATGTTATCACG 59.967 50.000 9.17 0.00 45.26 4.35
4743 5270 2.481289 TGGCAACCATGTTATCACGA 57.519 45.000 0.00 0.00 0.00 4.35
4744 5271 2.080693 TGGCAACCATGTTATCACGAC 58.919 47.619 0.00 0.00 0.00 4.34
4745 5272 1.400494 GGCAACCATGTTATCACGACC 59.600 52.381 0.00 0.00 0.00 4.79
4746 5273 2.080693 GCAACCATGTTATCACGACCA 58.919 47.619 0.00 0.00 0.00 4.02
4747 5274 2.159572 GCAACCATGTTATCACGACCAC 60.160 50.000 0.00 0.00 0.00 4.16
4748 5275 2.004583 ACCATGTTATCACGACCACG 57.995 50.000 0.00 0.00 45.75 4.94
4749 5276 1.546923 ACCATGTTATCACGACCACGA 59.453 47.619 0.00 0.00 42.66 4.35
4750 5277 2.167693 ACCATGTTATCACGACCACGAT 59.832 45.455 0.00 0.00 42.66 3.73
4751 5278 3.194861 CCATGTTATCACGACCACGATT 58.805 45.455 0.00 0.00 42.66 3.34
4752 5279 4.142116 ACCATGTTATCACGACCACGATTA 60.142 41.667 0.00 0.00 42.66 1.75
4753 5280 4.988540 CCATGTTATCACGACCACGATTAT 59.011 41.667 0.00 0.00 42.66 1.28
4754 5281 6.153756 CCATGTTATCACGACCACGATTATA 58.846 40.000 0.00 0.00 42.66 0.98
4755 5282 6.308041 CCATGTTATCACGACCACGATTATAG 59.692 42.308 0.00 0.00 42.66 1.31
4756 5283 5.765176 TGTTATCACGACCACGATTATAGG 58.235 41.667 0.00 0.00 42.66 2.57
4757 5284 2.787601 TCACGACCACGATTATAGGC 57.212 50.000 0.00 0.00 42.66 3.93
4758 5285 2.304092 TCACGACCACGATTATAGGCT 58.696 47.619 0.00 0.00 42.66 4.58
4759 5286 2.691526 TCACGACCACGATTATAGGCTT 59.308 45.455 0.00 0.00 42.66 4.35
4760 5287 2.794910 CACGACCACGATTATAGGCTTG 59.205 50.000 0.00 0.00 42.66 4.01
4761 5288 2.691526 ACGACCACGATTATAGGCTTGA 59.308 45.455 0.00 0.00 42.66 3.02
4762 5289 3.131577 ACGACCACGATTATAGGCTTGAA 59.868 43.478 0.00 0.00 42.66 2.69
4763 5290 4.116961 CGACCACGATTATAGGCTTGAAA 58.883 43.478 0.00 0.00 42.66 2.69
4764 5291 4.750098 CGACCACGATTATAGGCTTGAAAT 59.250 41.667 0.00 0.00 42.66 2.17
4765 5292 5.924254 CGACCACGATTATAGGCTTGAAATA 59.076 40.000 0.00 0.00 42.66 1.40
4766 5293 6.590292 CGACCACGATTATAGGCTTGAAATAT 59.410 38.462 0.00 0.00 42.66 1.28
4767 5294 7.117812 CGACCACGATTATAGGCTTGAAATATT 59.882 37.037 0.00 0.00 42.66 1.28
4768 5295 8.691661 ACCACGATTATAGGCTTGAAATATTT 57.308 30.769 0.00 0.00 0.00 1.40
4769 5296 8.567948 ACCACGATTATAGGCTTGAAATATTTG 58.432 33.333 5.17 0.00 0.00 2.32
4770 5297 8.023128 CCACGATTATAGGCTTGAAATATTTGG 58.977 37.037 5.17 0.00 0.00 3.28
4771 5298 8.567948 CACGATTATAGGCTTGAAATATTTGGT 58.432 33.333 5.17 0.00 0.00 3.67
4772 5299 8.784043 ACGATTATAGGCTTGAAATATTTGGTC 58.216 33.333 5.17 0.00 0.00 4.02
4773 5300 9.003658 CGATTATAGGCTTGAAATATTTGGTCT 57.996 33.333 5.17 5.28 0.00 3.85
4803 5330 4.530857 GAGGGTCGGCCATGACGG 62.531 72.222 9.07 0.00 39.83 4.79
4917 5444 2.429250 CCAACCGACCCTTTTTGAGTTT 59.571 45.455 0.00 0.00 0.00 2.66
4918 5445 3.118920 CCAACCGACCCTTTTTGAGTTTT 60.119 43.478 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.601240 TCCTTTTGGGTCATCATGCA 57.399 45.000 0.00 0.00 40.87 3.96
35 36 2.418368 TTGTCTTGCCAACACACTCT 57.582 45.000 0.00 0.00 0.00 3.24
39 40 3.351740 TCTTCTTTGTCTTGCCAACACA 58.648 40.909 0.00 0.00 0.00 3.72
40 41 3.793465 GCTCTTCTTTGTCTTGCCAACAC 60.793 47.826 0.00 0.00 0.00 3.32
41 42 2.358898 GCTCTTCTTTGTCTTGCCAACA 59.641 45.455 0.00 0.00 0.00 3.33
122 124 2.167281 CCTCCATCTCAAGCTTCTTCGA 59.833 50.000 0.00 0.00 0.00 3.71
150 152 0.247576 CTTGAGCATCTTCGCTTGCG 60.248 55.000 8.87 8.87 44.01 4.85
207 209 2.124819 CCATGCAAGCGAGCTCCT 60.125 61.111 8.47 3.35 34.99 3.69
362 370 1.519408 GTCATACCGGCACACTTGTT 58.481 50.000 0.00 0.00 0.00 2.83
513 532 2.570284 TTCAGAGTTCTCGCCGGCA 61.570 57.895 28.98 12.94 0.00 5.69
531 550 1.126488 AGAGATCATGTGGCCATCGT 58.874 50.000 9.72 0.75 0.00 3.73
556 585 9.511144 AAACAATTTAAACTTAGAAAGTGACCG 57.489 29.630 2.26 0.00 41.91 4.79
622 651 2.041976 CTACCCGCTCATCGTCCAT 58.958 57.895 0.00 0.00 36.19 3.41
623 652 2.782222 GCTACCCGCTCATCGTCCA 61.782 63.158 0.00 0.00 36.19 4.02
638 667 3.872511 TTTGTCCGTTTAGATCGGCTA 57.127 42.857 0.00 0.00 46.49 3.93
663 692 3.554752 CCAAACAGATGCCCATTTCGTTT 60.555 43.478 0.00 0.00 0.00 3.60
664 693 2.029110 CCAAACAGATGCCCATTTCGTT 60.029 45.455 0.00 0.00 0.00 3.85
670 699 1.269012 CAACCCAAACAGATGCCCAT 58.731 50.000 0.00 0.00 0.00 4.00
673 702 1.293179 GCCAACCCAAACAGATGCC 59.707 57.895 0.00 0.00 0.00 4.40
676 705 2.625823 CGCGCCAACCCAAACAGAT 61.626 57.895 0.00 0.00 0.00 2.90
679 708 3.141488 AACGCGCCAACCCAAACA 61.141 55.556 5.73 0.00 0.00 2.83
680 709 2.656973 CAACGCGCCAACCCAAAC 60.657 61.111 5.73 0.00 0.00 2.93
686 715 2.051345 CAACTCCAACGCGCCAAC 60.051 61.111 5.73 0.00 0.00 3.77
688 717 4.927782 AGCAACTCCAACGCGCCA 62.928 61.111 5.73 0.00 0.00 5.69
715 744 0.179094 TAGATTGCTACCCAACGCCG 60.179 55.000 0.00 0.00 35.99 6.46
717 746 2.311124 ACTAGATTGCTACCCAACGC 57.689 50.000 0.00 0.00 35.99 4.84
780 813 7.781324 TTCTTTCTAAATGGCAATCCTTTCT 57.219 32.000 0.00 0.00 0.00 2.52
781 814 8.306761 TCTTTCTTTCTAAATGGCAATCCTTTC 58.693 33.333 0.00 0.00 0.00 2.62
782 815 8.193953 TCTTTCTTTCTAAATGGCAATCCTTT 57.806 30.769 0.00 0.00 0.00 3.11
783 816 7.781324 TCTTTCTTTCTAAATGGCAATCCTT 57.219 32.000 0.00 0.00 0.00 3.36
784 817 7.781324 TTCTTTCTTTCTAAATGGCAATCCT 57.219 32.000 0.00 0.00 0.00 3.24
785 818 8.831715 TTTTCTTTCTTTCTAAATGGCAATCC 57.168 30.769 0.00 0.00 0.00 3.01
787 820 9.836864 AGTTTTTCTTTCTTTCTAAATGGCAAT 57.163 25.926 0.00 0.00 0.00 3.56
789 822 9.965824 CTAGTTTTTCTTTCTTTCTAAATGGCA 57.034 29.630 0.00 0.00 0.00 4.92
799 832 9.534565 GCAATCCTTTCTAGTTTTTCTTTCTTT 57.465 29.630 0.00 0.00 0.00 2.52
800 833 8.144478 GGCAATCCTTTCTAGTTTTTCTTTCTT 58.856 33.333 0.00 0.00 0.00 2.52
801 834 7.255977 GGGCAATCCTTTCTAGTTTTTCTTTCT 60.256 37.037 0.00 0.00 0.00 2.52
802 835 6.868864 GGGCAATCCTTTCTAGTTTTTCTTTC 59.131 38.462 0.00 0.00 0.00 2.62
803 836 6.239600 GGGGCAATCCTTTCTAGTTTTTCTTT 60.240 38.462 0.00 0.00 35.33 2.52
804 837 5.246203 GGGGCAATCCTTTCTAGTTTTTCTT 59.754 40.000 0.00 0.00 35.33 2.52
805 838 4.772624 GGGGCAATCCTTTCTAGTTTTTCT 59.227 41.667 0.00 0.00 35.33 2.52
806 839 4.772624 AGGGGCAATCCTTTCTAGTTTTTC 59.227 41.667 0.00 0.00 32.13 2.29
813 846 7.147213 TGTGATAATTAGGGGCAATCCTTTCTA 60.147 37.037 0.00 0.00 38.30 2.10
908 942 8.353684 TGGGTTTTGGTTTTTCTTTTTCTTTTC 58.646 29.630 0.00 0.00 0.00 2.29
929 963 2.420043 CTGACGTCGGTGTGGGTT 59.580 61.111 16.54 0.00 0.00 4.11
1445 1479 2.486203 TCTGCGCAACCAAAATCGTATT 59.514 40.909 13.05 0.00 0.00 1.89
1455 1489 2.747460 GGCTCATCTGCGCAACCA 60.747 61.111 13.05 0.00 0.00 3.67
1456 1490 3.869272 CGGCTCATCTGCGCAACC 61.869 66.667 13.05 5.37 0.00 3.77
1462 1496 0.599728 GACATCTCCGGCTCATCTGC 60.600 60.000 0.00 0.00 0.00 4.26
1491 1525 1.941476 GACGCACATTCGACACCGTC 61.941 60.000 7.28 7.28 38.31 4.79
1807 1847 3.057806 ACCGTCAAACCAATCGAAAATCC 60.058 43.478 0.00 0.00 0.00 3.01
1822 1862 2.165845 GCTCTAAGCCTCTAACCGTCAA 59.834 50.000 0.00 0.00 34.48 3.18
1894 1935 8.301002 GCAAAGTAGGAAACACAAATACCATAA 58.699 33.333 0.00 0.00 0.00 1.90
2025 2066 1.598130 GCGAACTGGACCAGCAGTT 60.598 57.895 21.95 9.39 43.47 3.16
2342 2384 5.940192 AAACGTATGATGCAGAAGTTTGA 57.060 34.783 5.56 0.00 36.36 2.69
2486 2529 5.779241 AGATCCTACAGGTTGAATTGGAA 57.221 39.130 0.00 0.00 36.34 3.53
2553 2596 5.016831 AGACCAAGGATAAATGACAAACCC 58.983 41.667 0.00 0.00 0.00 4.11
2609 2653 6.795144 AAATAATCATCACTGGGCAATCAA 57.205 33.333 0.00 0.00 0.00 2.57
2649 2694 7.016153 AGTGTTCTATTGGGTTACTGAATCA 57.984 36.000 0.00 0.00 0.00 2.57
2711 2756 6.295249 CCCAAAATAGTGGAACAAACCAAAT 58.705 36.000 0.00 0.00 44.16 2.32
2716 2761 4.600692 AGCCCAAAATAGTGGAACAAAC 57.399 40.909 0.00 0.00 44.16 2.93
2720 2765 7.399245 TGTTATAAGCCCAAAATAGTGGAAC 57.601 36.000 0.00 0.00 41.65 3.62
2723 2768 7.836842 AGTTTGTTATAAGCCCAAAATAGTGG 58.163 34.615 2.34 0.00 38.51 4.00
2724 2769 9.139174 CAAGTTTGTTATAAGCCCAAAATAGTG 57.861 33.333 2.34 0.00 30.57 2.74
2725 2770 9.084533 TCAAGTTTGTTATAAGCCCAAAATAGT 57.915 29.630 2.34 0.00 30.57 2.12
2789 2838 4.129380 GGAAAGCAAACCATTTTGAGCTT 58.871 39.130 1.29 0.00 44.38 3.74
3143 3192 1.367346 TTGGATAGGGTCAGGTGCAA 58.633 50.000 0.00 0.00 0.00 4.08
3235 3285 1.541588 TCATCGTCTAGCCCATCATCG 59.458 52.381 0.00 0.00 0.00 3.84
3243 3293 5.833082 TCTTATCAAAGTCATCGTCTAGCC 58.167 41.667 0.00 0.00 34.13 3.93
3302 3352 4.982916 GTGGCTAGTGACGGTATCTATTTG 59.017 45.833 0.00 0.00 0.00 2.32
3433 3483 1.268589 CCTCACATCGGTAGTAGCACG 60.269 57.143 0.00 0.00 0.00 5.34
3445 3495 2.768253 TGATCACCACACCTCACATC 57.232 50.000 0.00 0.00 0.00 3.06
3471 3521 5.050634 GCATAACAAGAAACGTGTACAGACA 60.051 40.000 0.00 0.00 0.00 3.41
3473 3523 5.176774 CAGCATAACAAGAAACGTGTACAGA 59.823 40.000 0.00 0.00 0.00 3.41
3508 3564 2.453983 GCCACCTGCAAATGCTTTTA 57.546 45.000 6.97 0.00 42.66 1.52
3526 3584 2.415512 GGAAGTCAAAGATACGTGGTGC 59.584 50.000 0.00 0.00 0.00 5.01
3533 3591 7.044798 AGCACTAATCTGGAAGTCAAAGATAC 58.955 38.462 0.00 0.00 33.76 2.24
3576 3634 8.991243 CTTCCAAAGCAATAGATTCAATTCAA 57.009 30.769 0.00 0.00 0.00 2.69
3601 3659 1.134670 CCTGGTGGTAGAGCACTAAGC 60.135 57.143 11.33 0.00 46.19 3.09
3602 3660 1.134670 GCCTGGTGGTAGAGCACTAAG 60.135 57.143 11.33 9.21 35.27 2.18
3603 3661 0.902531 GCCTGGTGGTAGAGCACTAA 59.097 55.000 11.33 0.73 35.27 2.24
3604 3662 0.041238 AGCCTGGTGGTAGAGCACTA 59.959 55.000 11.33 4.89 35.27 2.74
3605 3663 0.041238 TAGCCTGGTGGTAGAGCACT 59.959 55.000 11.33 0.00 35.27 4.40
3606 3664 1.123928 ATAGCCTGGTGGTAGAGCAC 58.876 55.000 3.23 3.23 35.27 4.40
3607 3665 1.879575 AATAGCCTGGTGGTAGAGCA 58.120 50.000 0.00 0.00 35.27 4.26
3608 3666 3.244249 CCTAAATAGCCTGGTGGTAGAGC 60.244 52.174 0.00 0.00 35.27 4.09
3609 3667 3.967987 ACCTAAATAGCCTGGTGGTAGAG 59.032 47.826 0.00 0.00 35.27 2.43
3610 3668 3.709653 CACCTAAATAGCCTGGTGGTAGA 59.290 47.826 0.00 0.00 44.33 2.59
3611 3669 4.073293 CACCTAAATAGCCTGGTGGTAG 57.927 50.000 0.00 0.00 44.33 3.18
3616 3674 1.844497 GGGACACCTAAATAGCCTGGT 59.156 52.381 0.00 0.00 0.00 4.00
3617 3675 2.640316 GGGACACCTAAATAGCCTGG 57.360 55.000 0.00 0.00 0.00 4.45
3629 3687 5.243730 TCAAAGATTCAATTCAAGGGACACC 59.756 40.000 0.00 0.00 0.00 4.16
3630 3688 6.015940 AGTCAAAGATTCAATTCAAGGGACAC 60.016 38.462 0.00 0.00 0.00 3.67
3631 3689 6.070656 AGTCAAAGATTCAATTCAAGGGACA 58.929 36.000 0.00 0.00 0.00 4.02
3632 3690 6.581171 AGTCAAAGATTCAATTCAAGGGAC 57.419 37.500 0.00 0.00 0.00 4.46
3633 3691 6.209391 GGAAGTCAAAGATTCAATTCAAGGGA 59.791 38.462 0.00 0.00 0.00 4.20
3634 3692 6.015180 TGGAAGTCAAAGATTCAATTCAAGGG 60.015 38.462 0.00 0.00 0.00 3.95
3635 3693 6.985117 TGGAAGTCAAAGATTCAATTCAAGG 58.015 36.000 0.00 0.00 0.00 3.61
3636 3694 7.879070 TCTGGAAGTCAAAGATTCAATTCAAG 58.121 34.615 0.00 0.00 33.76 3.02
3637 3695 7.822161 TCTGGAAGTCAAAGATTCAATTCAA 57.178 32.000 0.00 0.00 33.76 2.69
3638 3696 8.413309 AATCTGGAAGTCAAAGATTCAATTCA 57.587 30.769 3.75 0.00 36.18 2.57
3639 3697 9.780413 GTAATCTGGAAGTCAAAGATTCAATTC 57.220 33.333 10.21 0.00 40.32 2.17
3640 3698 9.525826 AGTAATCTGGAAGTCAAAGATTCAATT 57.474 29.630 10.21 0.00 40.32 2.32
3641 3699 8.954350 CAGTAATCTGGAAGTCAAAGATTCAAT 58.046 33.333 10.21 0.09 40.32 2.57
3642 3700 7.094634 GCAGTAATCTGGAAGTCAAAGATTCAA 60.095 37.037 10.21 0.00 40.32 2.69
3643 3701 6.372659 GCAGTAATCTGGAAGTCAAAGATTCA 59.627 38.462 10.21 0.03 40.32 2.57
3644 3702 6.597280 AGCAGTAATCTGGAAGTCAAAGATTC 59.403 38.462 10.21 5.33 40.32 2.52
3645 3703 6.479884 AGCAGTAATCTGGAAGTCAAAGATT 58.520 36.000 11.18 11.18 42.04 2.40
3646 3704 6.059787 AGCAGTAATCTGGAAGTCAAAGAT 57.940 37.500 0.00 0.00 41.57 2.40
3647 3705 5.482908 GAGCAGTAATCTGGAAGTCAAAGA 58.517 41.667 0.00 0.00 41.57 2.52
3648 3706 4.328440 CGAGCAGTAATCTGGAAGTCAAAG 59.672 45.833 0.00 0.00 41.57 2.77
3649 3707 4.021456 TCGAGCAGTAATCTGGAAGTCAAA 60.021 41.667 0.00 0.00 41.57 2.69
3650 3708 3.509967 TCGAGCAGTAATCTGGAAGTCAA 59.490 43.478 0.00 0.00 41.57 3.18
3651 3709 3.089284 TCGAGCAGTAATCTGGAAGTCA 58.911 45.455 0.00 0.00 41.57 3.41
3652 3710 3.440228 GTCGAGCAGTAATCTGGAAGTC 58.560 50.000 0.00 0.00 41.57 3.01
3653 3711 2.166664 GGTCGAGCAGTAATCTGGAAGT 59.833 50.000 10.30 0.00 41.57 3.01
3654 3712 2.482142 GGGTCGAGCAGTAATCTGGAAG 60.482 54.545 17.59 0.00 41.57 3.46
3655 3713 1.480954 GGGTCGAGCAGTAATCTGGAA 59.519 52.381 17.59 0.00 41.57 3.53
3656 3714 1.112113 GGGTCGAGCAGTAATCTGGA 58.888 55.000 17.59 0.00 41.57 3.86
3657 3715 1.115467 AGGGTCGAGCAGTAATCTGG 58.885 55.000 17.59 0.00 41.57 3.86
3658 3716 2.969628 AAGGGTCGAGCAGTAATCTG 57.030 50.000 17.59 0.00 43.87 2.90
3659 3717 3.381908 CACTAAGGGTCGAGCAGTAATCT 59.618 47.826 17.59 0.00 0.00 2.40
3660 3718 3.491104 CCACTAAGGGTCGAGCAGTAATC 60.491 52.174 17.59 0.00 0.00 1.75
3661 3719 2.431057 CCACTAAGGGTCGAGCAGTAAT 59.569 50.000 17.59 0.00 0.00 1.89
3662 3720 1.822990 CCACTAAGGGTCGAGCAGTAA 59.177 52.381 17.59 0.00 0.00 2.24
3663 3721 1.471119 CCACTAAGGGTCGAGCAGTA 58.529 55.000 17.59 6.63 0.00 2.74
3664 3722 2.277858 CCACTAAGGGTCGAGCAGT 58.722 57.895 17.59 8.60 0.00 4.40
3674 3732 2.102578 CAATTCAAGCCCCCACTAAGG 58.897 52.381 0.00 0.00 37.03 2.69
3675 3733 3.085952 TCAATTCAAGCCCCCACTAAG 57.914 47.619 0.00 0.00 0.00 2.18
3676 3734 3.534357 TTCAATTCAAGCCCCCACTAA 57.466 42.857 0.00 0.00 0.00 2.24
3677 3735 3.269381 AGATTCAATTCAAGCCCCCACTA 59.731 43.478 0.00 0.00 0.00 2.74
3678 3736 2.043526 AGATTCAATTCAAGCCCCCACT 59.956 45.455 0.00 0.00 0.00 4.00
3679 3737 2.460669 AGATTCAATTCAAGCCCCCAC 58.539 47.619 0.00 0.00 0.00 4.61
3680 3738 2.925966 AGATTCAATTCAAGCCCCCA 57.074 45.000 0.00 0.00 0.00 4.96
3681 3739 4.502087 GCAATAGATTCAATTCAAGCCCCC 60.502 45.833 0.00 0.00 0.00 5.40
3682 3740 4.343239 AGCAATAGATTCAATTCAAGCCCC 59.657 41.667 0.00 0.00 0.00 5.80
3683 3741 5.526506 AGCAATAGATTCAATTCAAGCCC 57.473 39.130 0.00 0.00 0.00 5.19
3684 3742 8.811378 GTTAAAGCAATAGATTCAATTCAAGCC 58.189 33.333 0.00 0.00 0.00 4.35
3685 3743 9.357652 TGTTAAAGCAATAGATTCAATTCAAGC 57.642 29.630 0.00 0.00 0.00 4.01
3759 3817 4.397103 CACATGGAAGTGATACACAGCATT 59.603 41.667 0.00 0.00 42.05 3.56
3763 3821 4.318332 ACACACATGGAAGTGATACACAG 58.682 43.478 18.22 0.00 42.05 3.66
3778 3836 3.436704 CCTTAAGCATGTCGAACACACAT 59.563 43.478 0.00 0.00 38.04 3.21
3797 3855 9.944376 ATGTAACGACAATATCTTATATGCCTT 57.056 29.630 0.00 0.00 39.59 4.35
3815 3873 4.808895 GCATCAACCATACAGATGTAACGA 59.191 41.667 0.00 0.00 40.86 3.85
3878 3936 1.480954 GCCTTCTTATCCTCGTCACCA 59.519 52.381 0.00 0.00 0.00 4.17
3929 3987 0.904865 AGACTCGGGAAGGCATCACA 60.905 55.000 0.00 0.00 34.25 3.58
3952 4010 5.450137 CCTTCATCAACATCAAAGCCATCTC 60.450 44.000 0.00 0.00 0.00 2.75
3960 4018 2.095110 CAGCGCCTTCATCAACATCAAA 60.095 45.455 2.29 0.00 0.00 2.69
4061 4119 7.715265 TCTAGACTTCAATCACAACAAGAAC 57.285 36.000 0.00 0.00 0.00 3.01
4103 4161 6.670695 AGTAGAAACAAAAAGGAATGCCAT 57.329 33.333 0.00 0.00 36.29 4.40
4243 4301 1.391485 CGCTTCGACAACAAGGATCAG 59.609 52.381 0.00 0.00 0.00 2.90
4244 4302 1.000394 TCGCTTCGACAACAAGGATCA 60.000 47.619 0.00 0.00 0.00 2.92
4258 4316 4.483476 ACAAAAACACTATGGTCGCTTC 57.517 40.909 0.00 0.00 0.00 3.86
4272 4333 8.432359 ACAAACTCTTTCAATTCGAACAAAAAC 58.568 29.630 0.00 0.00 31.73 2.43
4286 4347 7.281324 TCGATGGAAGTTTTACAAACTCTTTCA 59.719 33.333 2.42 2.30 0.00 2.69
4295 4356 7.281324 TGAGAGTTTTCGATGGAAGTTTTACAA 59.719 33.333 0.00 0.00 32.80 2.41
4311 4372 7.777440 AGGGGATCTTCATATTTGAGAGTTTTC 59.223 37.037 0.00 0.00 32.27 2.29
4331 4392 6.271537 AGATTTTATTTGGGAAACAGGGGAT 58.728 36.000 0.00 0.00 0.00 3.85
4336 4401 7.441017 TGGTGAAGATTTTATTTGGGAAACAG 58.559 34.615 0.00 0.00 0.00 3.16
4337 4402 7.366847 TGGTGAAGATTTTATTTGGGAAACA 57.633 32.000 0.00 0.00 0.00 2.83
4359 4426 2.354199 AGTTTTTGCCAACGCATTTTGG 59.646 40.909 4.67 4.67 46.67 3.28
4388 4455 3.737172 CTGGGAGCCAAAACGCCG 61.737 66.667 0.00 0.00 30.80 6.46
4389 4456 3.373565 CCTGGGAGCCAAAACGCC 61.374 66.667 0.00 0.00 30.80 5.68
4399 4466 0.988145 TTATGTCTGGGGCCTGGGAG 60.988 60.000 0.84 0.00 0.00 4.30
4400 4467 0.551377 TTTATGTCTGGGGCCTGGGA 60.551 55.000 0.84 0.00 0.00 4.37
4401 4468 0.395724 GTTTATGTCTGGGGCCTGGG 60.396 60.000 0.84 0.00 0.00 4.45
4402 4469 0.331278 TGTTTATGTCTGGGGCCTGG 59.669 55.000 0.84 0.00 0.00 4.45
4403 4470 1.004745 ACTGTTTATGTCTGGGGCCTG 59.995 52.381 0.84 0.00 0.00 4.85
4408 4475 8.204160 TCAGTGATATTACTGTTTATGTCTGGG 58.796 37.037 22.77 0.00 46.32 4.45
4424 4491 9.410556 GTTGTTGTTGCTATTTTCAGTGATATT 57.589 29.630 0.00 0.00 0.00 1.28
4425 4492 8.575589 TGTTGTTGTTGCTATTTTCAGTGATAT 58.424 29.630 0.00 0.00 0.00 1.63
4426 4493 7.935520 TGTTGTTGTTGCTATTTTCAGTGATA 58.064 30.769 0.00 0.00 0.00 2.15
4430 4497 7.897575 TTTTGTTGTTGTTGCTATTTTCAGT 57.102 28.000 0.00 0.00 0.00 3.41
4471 4538 2.498167 AGCACACACTCATCTTTCACC 58.502 47.619 0.00 0.00 0.00 4.02
4472 4539 3.561310 TCAAGCACACACTCATCTTTCAC 59.439 43.478 0.00 0.00 0.00 3.18
4474 4541 4.214971 ACATCAAGCACACACTCATCTTTC 59.785 41.667 0.00 0.00 0.00 2.62
4476 4543 3.748083 ACATCAAGCACACACTCATCTT 58.252 40.909 0.00 0.00 0.00 2.40
4477 4544 3.332919 GACATCAAGCACACACTCATCT 58.667 45.455 0.00 0.00 0.00 2.90
4478 4545 2.417933 GGACATCAAGCACACACTCATC 59.582 50.000 0.00 0.00 0.00 2.92
4481 4548 0.792640 CGGACATCAAGCACACACTC 59.207 55.000 0.00 0.00 0.00 3.51
4482 4549 0.106708 ACGGACATCAAGCACACACT 59.893 50.000 0.00 0.00 0.00 3.55
4486 4553 1.965930 GGCACGGACATCAAGCACA 60.966 57.895 0.00 0.00 0.00 4.57
4498 4565 1.541147 ACTTCATCACATTTGGCACGG 59.459 47.619 0.00 0.00 0.00 4.94
4499 4566 2.995466 ACTTCATCACATTTGGCACG 57.005 45.000 0.00 0.00 0.00 5.34
4501 4568 3.567585 TCGAAACTTCATCACATTTGGCA 59.432 39.130 0.00 0.00 0.00 4.92
4509 4576 6.658831 TCTTCAAATGTCGAAACTTCATCAC 58.341 36.000 0.00 0.00 0.00 3.06
4513 4580 4.816385 AGCTCTTCAAATGTCGAAACTTCA 59.184 37.500 0.00 0.00 0.00 3.02
4514 4581 5.178438 AGAGCTCTTCAAATGTCGAAACTTC 59.822 40.000 11.45 0.00 0.00 3.01
4515 4582 5.059833 AGAGCTCTTCAAATGTCGAAACTT 58.940 37.500 11.45 0.00 0.00 2.66
4516 4583 4.636249 AGAGCTCTTCAAATGTCGAAACT 58.364 39.130 11.45 0.00 0.00 2.66
4528 4595 4.188462 TCGTTTTTGTTGAGAGCTCTTCA 58.812 39.130 19.36 14.14 0.00 3.02
4529 4596 4.795970 TCGTTTTTGTTGAGAGCTCTTC 57.204 40.909 19.36 11.63 0.00 2.87
4530 4597 6.861065 TTATCGTTTTTGTTGAGAGCTCTT 57.139 33.333 19.36 0.91 0.00 2.85
4533 4600 8.134895 TGAATTTTATCGTTTTTGTTGAGAGCT 58.865 29.630 0.00 0.00 0.00 4.09
4534 4601 8.280909 TGAATTTTATCGTTTTTGTTGAGAGC 57.719 30.769 0.00 0.00 0.00 4.09
4535 4602 8.905702 CCTGAATTTTATCGTTTTTGTTGAGAG 58.094 33.333 0.00 0.00 0.00 3.20
4536 4603 7.381139 GCCTGAATTTTATCGTTTTTGTTGAGA 59.619 33.333 0.00 0.00 0.00 3.27
4537 4604 7.359181 GGCCTGAATTTTATCGTTTTTGTTGAG 60.359 37.037 0.00 0.00 0.00 3.02
4538 4605 6.422400 GGCCTGAATTTTATCGTTTTTGTTGA 59.578 34.615 0.00 0.00 0.00 3.18
4539 4606 6.423604 AGGCCTGAATTTTATCGTTTTTGTTG 59.576 34.615 3.11 0.00 0.00 3.33
4540 4607 6.423604 CAGGCCTGAATTTTATCGTTTTTGTT 59.576 34.615 29.88 0.00 0.00 2.83
4541 4608 5.925969 CAGGCCTGAATTTTATCGTTTTTGT 59.074 36.000 29.88 0.00 0.00 2.83
4542 4609 5.163963 GCAGGCCTGAATTTTATCGTTTTTG 60.164 40.000 37.21 4.07 0.00 2.44
4543 4610 4.929211 GCAGGCCTGAATTTTATCGTTTTT 59.071 37.500 37.21 0.00 0.00 1.94
4544 4611 4.494484 GCAGGCCTGAATTTTATCGTTTT 58.506 39.130 37.21 0.00 0.00 2.43
4545 4612 3.427503 CGCAGGCCTGAATTTTATCGTTT 60.428 43.478 37.21 0.00 0.00 3.60
4547 4614 1.670811 CGCAGGCCTGAATTTTATCGT 59.329 47.619 37.21 0.00 0.00 3.73
4548 4615 1.939934 TCGCAGGCCTGAATTTTATCG 59.060 47.619 37.21 25.33 0.00 2.92
4561 4628 2.774439 TTTCAAACTTTCTCGCAGGC 57.226 45.000 0.00 0.00 0.00 4.85
4586 4653 9.239002 CGATATTTCGTCTCTGAAATCTACTTT 57.761 33.333 5.10 0.00 43.28 2.66
4587 4654 8.622157 TCGATATTTCGTCTCTGAAATCTACTT 58.378 33.333 5.46 0.00 43.28 2.24
4588 4655 8.155821 TCGATATTTCGTCTCTGAAATCTACT 57.844 34.615 5.46 0.00 43.28 2.57
4591 4658 9.400638 GTATTCGATATTTCGTCTCTGAAATCT 57.599 33.333 5.46 0.00 43.28 2.40
4595 4662 7.704271 ACAGTATTCGATATTTCGTCTCTGAA 58.296 34.615 19.05 4.61 45.65 3.02
4596 4663 7.260558 ACAGTATTCGATATTTCGTCTCTGA 57.739 36.000 19.05 0.00 45.65 3.27
4597 4664 7.269511 GCTACAGTATTCGATATTTCGTCTCTG 59.730 40.741 5.46 11.36 45.65 3.35
4598 4665 7.041303 TGCTACAGTATTCGATATTTCGTCTCT 60.041 37.037 5.46 0.00 45.65 3.10
4599 4666 7.059716 GTGCTACAGTATTCGATATTTCGTCTC 59.940 40.741 5.46 0.00 45.65 3.36
4600 4667 6.856938 GTGCTACAGTATTCGATATTTCGTCT 59.143 38.462 5.46 0.00 45.65 4.18
4601 4668 6.856938 AGTGCTACAGTATTCGATATTTCGTC 59.143 38.462 5.46 0.00 45.65 4.20
4602 4669 6.736123 AGTGCTACAGTATTCGATATTTCGT 58.264 36.000 5.46 0.00 45.65 3.85
4603 4670 8.897457 ATAGTGCTACAGTATTCGATATTTCG 57.103 34.615 0.00 0.00 46.87 3.46
4606 4673 9.982651 ACAAATAGTGCTACAGTATTCGATATT 57.017 29.630 7.85 0.00 38.54 1.28
4611 4678 9.297586 TCTTAACAAATAGTGCTACAGTATTCG 57.702 33.333 7.85 0.96 38.54 3.34
4614 4681 9.367444 GTGTCTTAACAAATAGTGCTACAGTAT 57.633 33.333 0.00 0.00 37.08 2.12
4617 4684 7.891183 AGTGTCTTAACAAATAGTGCTACAG 57.109 36.000 0.00 0.00 37.08 2.74
4618 4685 9.938280 AATAGTGTCTTAACAAATAGTGCTACA 57.062 29.630 0.00 0.00 37.08 2.74
4630 4697 7.010460 CGCAGAATCATCAATAGTGTCTTAACA 59.990 37.037 0.00 0.00 0.00 2.41
4633 4700 6.573434 ACGCAGAATCATCAATAGTGTCTTA 58.427 36.000 0.00 0.00 0.00 2.10
4648 4715 0.725784 CGTGGTTGCAACGCAGAATC 60.726 55.000 22.67 8.04 40.61 2.52
4649 4716 1.282570 CGTGGTTGCAACGCAGAAT 59.717 52.632 22.67 0.00 40.61 2.40
4655 4722 0.315869 GAGACAACGTGGTTGCAACG 60.316 55.000 22.67 15.32 46.20 4.10
4658 5180 1.142097 TCGAGACAACGTGGTTGCA 59.858 52.632 0.00 0.00 46.20 4.08
4673 5196 3.187022 TCAAACTCGATTGTAGTCGTCGA 59.813 43.478 0.00 0.00 42.07 4.20
4709 5236 4.215109 GGTTGCCATCCATACCTAATTGT 58.785 43.478 0.00 0.00 0.00 2.71
4710 5237 4.214310 TGGTTGCCATCCATACCTAATTG 58.786 43.478 0.00 0.00 0.00 2.32
4712 5239 4.140947 ACATGGTTGCCATCCATACCTAAT 60.141 41.667 6.97 0.00 43.15 1.73
4713 5240 3.204158 ACATGGTTGCCATCCATACCTAA 59.796 43.478 6.97 0.00 43.15 2.69
4714 5241 2.782925 ACATGGTTGCCATCCATACCTA 59.217 45.455 6.97 0.00 43.15 3.08
4715 5242 1.570501 ACATGGTTGCCATCCATACCT 59.429 47.619 6.97 0.00 43.15 3.08
4716 5243 2.071778 ACATGGTTGCCATCCATACC 57.928 50.000 6.97 0.00 43.15 2.73
4717 5244 4.826733 TGATAACATGGTTGCCATCCATAC 59.173 41.667 6.97 0.00 43.15 2.39
4718 5245 4.826733 GTGATAACATGGTTGCCATCCATA 59.173 41.667 6.97 0.00 43.15 2.74
4719 5246 3.638160 GTGATAACATGGTTGCCATCCAT 59.362 43.478 1.28 1.28 43.15 3.41
4720 5247 3.023119 GTGATAACATGGTTGCCATCCA 58.977 45.455 0.00 0.00 43.15 3.41
4721 5248 2.033299 CGTGATAACATGGTTGCCATCC 59.967 50.000 0.00 0.00 43.15 3.51
4722 5249 2.942376 TCGTGATAACATGGTTGCCATC 59.058 45.455 0.00 0.00 43.15 3.51
4723 5250 2.682856 GTCGTGATAACATGGTTGCCAT 59.317 45.455 0.00 0.00 46.37 4.40
4724 5251 2.080693 GTCGTGATAACATGGTTGCCA 58.919 47.619 0.00 0.00 38.19 4.92
4725 5252 1.400494 GGTCGTGATAACATGGTTGCC 59.600 52.381 0.00 0.00 34.18 4.52
4726 5253 2.080693 TGGTCGTGATAACATGGTTGC 58.919 47.619 0.00 0.00 34.18 4.17
4727 5254 2.093625 CGTGGTCGTGATAACATGGTTG 59.906 50.000 0.00 0.00 34.18 3.77
4728 5255 2.028839 TCGTGGTCGTGATAACATGGTT 60.029 45.455 0.00 0.00 38.33 3.67
4729 5256 1.546923 TCGTGGTCGTGATAACATGGT 59.453 47.619 0.00 0.00 38.33 3.55
4730 5257 2.287393 TCGTGGTCGTGATAACATGG 57.713 50.000 0.00 0.00 38.33 3.66
4731 5258 6.308041 CCTATAATCGTGGTCGTGATAACATG 59.692 42.308 0.00 0.00 38.33 3.21
4732 5259 6.387465 CCTATAATCGTGGTCGTGATAACAT 58.613 40.000 0.00 0.00 38.33 2.71
4733 5260 5.765176 CCTATAATCGTGGTCGTGATAACA 58.235 41.667 0.00 0.00 38.33 2.41
4734 5261 4.620184 GCCTATAATCGTGGTCGTGATAAC 59.380 45.833 0.00 0.00 38.33 1.89
4735 5262 4.521639 AGCCTATAATCGTGGTCGTGATAA 59.478 41.667 0.00 0.00 38.33 1.75
4736 5263 4.077108 AGCCTATAATCGTGGTCGTGATA 58.923 43.478 0.00 0.00 38.33 2.15
4737 5264 2.891580 AGCCTATAATCGTGGTCGTGAT 59.108 45.455 0.00 0.00 38.33 3.06
4738 5265 2.304092 AGCCTATAATCGTGGTCGTGA 58.696 47.619 0.00 0.00 38.33 4.35
4739 5266 2.794910 CAAGCCTATAATCGTGGTCGTG 59.205 50.000 0.00 0.00 38.33 4.35
4740 5267 2.691526 TCAAGCCTATAATCGTGGTCGT 59.308 45.455 0.00 0.00 38.33 4.34
4741 5268 3.364889 TCAAGCCTATAATCGTGGTCG 57.635 47.619 0.00 0.00 38.55 4.79
4742 5269 7.907214 ATATTTCAAGCCTATAATCGTGGTC 57.093 36.000 0.00 0.00 0.00 4.02
4743 5270 8.567948 CAAATATTTCAAGCCTATAATCGTGGT 58.432 33.333 0.00 0.00 0.00 4.16
4744 5271 8.023128 CCAAATATTTCAAGCCTATAATCGTGG 58.977 37.037 0.00 0.00 0.00 4.94
4745 5272 8.567948 ACCAAATATTTCAAGCCTATAATCGTG 58.432 33.333 0.00 0.00 0.00 4.35
4746 5273 8.691661 ACCAAATATTTCAAGCCTATAATCGT 57.308 30.769 0.00 0.00 0.00 3.73
4747 5274 9.003658 AGACCAAATATTTCAAGCCTATAATCG 57.996 33.333 0.00 0.00 0.00 3.34
4755 5282 9.750125 CCTAATAAAGACCAAATATTTCAAGCC 57.250 33.333 0.00 0.00 0.00 4.35
4764 5291 8.665906 CCCTCCATACCTAATAAAGACCAAATA 58.334 37.037 0.00 0.00 0.00 1.40
4765 5292 7.130442 ACCCTCCATACCTAATAAAGACCAAAT 59.870 37.037 0.00 0.00 0.00 2.32
4766 5293 6.449041 ACCCTCCATACCTAATAAAGACCAAA 59.551 38.462 0.00 0.00 0.00 3.28
4767 5294 5.974370 ACCCTCCATACCTAATAAAGACCAA 59.026 40.000 0.00 0.00 0.00 3.67
4768 5295 5.544682 ACCCTCCATACCTAATAAAGACCA 58.455 41.667 0.00 0.00 0.00 4.02
4769 5296 5.279356 CGACCCTCCATACCTAATAAAGACC 60.279 48.000 0.00 0.00 0.00 3.85
4770 5297 5.279356 CCGACCCTCCATACCTAATAAAGAC 60.279 48.000 0.00 0.00 0.00 3.01
4771 5298 4.836736 CCGACCCTCCATACCTAATAAAGA 59.163 45.833 0.00 0.00 0.00 2.52
4772 5299 4.562963 GCCGACCCTCCATACCTAATAAAG 60.563 50.000 0.00 0.00 0.00 1.85
4773 5300 3.325716 GCCGACCCTCCATACCTAATAAA 59.674 47.826 0.00 0.00 0.00 1.40
4774 5301 2.901839 GCCGACCCTCCATACCTAATAA 59.098 50.000 0.00 0.00 0.00 1.40
4775 5302 2.532843 GCCGACCCTCCATACCTAATA 58.467 52.381 0.00 0.00 0.00 0.98
4803 5330 1.063266 TGGGAATCAATAGGGTTGGCC 60.063 52.381 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.