Multiple sequence alignment - TraesCS6B01G317100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G317100 chr6B 100.000 2870 0 0 1 2870 564994745 564991876 0.000000e+00 5301
1 TraesCS6B01G317100 chr6A 92.667 1650 76 15 731 2360 520356129 520354505 0.000000e+00 2335
2 TraesCS6B01G317100 chr6A 83.087 745 116 6 1 736 76763801 76764544 0.000000e+00 669
3 TraesCS6B01G317100 chr6A 90.045 442 40 4 2432 2870 520354461 520354021 1.150000e-158 569
4 TraesCS6B01G317100 chr6D 92.712 1427 69 15 731 2142 378379862 378378456 0.000000e+00 2026
5 TraesCS6B01G317100 chr6D 93.229 192 10 2 2679 2870 378376939 378376751 2.180000e-71 279
6 TraesCS6B01G317100 chr6D 88.166 169 19 1 1139 1306 358326167 358325999 1.740000e-47 200
7 TraesCS6B01G317100 chr1B 96.028 705 21 2 1 698 665268937 665268233 0.000000e+00 1140
8 TraesCS6B01G317100 chr5A 93.775 739 36 5 1 730 533273864 533273127 0.000000e+00 1101
9 TraesCS6B01G317100 chr5A 92.391 368 21 2 371 731 510996136 510996503 4.240000e-143 518
10 TraesCS6B01G317100 chr3D 92.963 739 44 3 1 731 591752913 591753651 0.000000e+00 1070
11 TraesCS6B01G317100 chr2D 91.588 737 53 4 1 729 595198323 595197588 0.000000e+00 1009
12 TraesCS6B01G317100 chr2D 89.205 176 19 0 1131 1306 32763253 32763428 1.340000e-53 220
13 TraesCS6B01G317100 chr7B 82.134 403 62 6 337 731 158518917 158518517 1.270000e-88 337
14 TraesCS6B01G317100 chr7B 92.405 158 12 0 1148 1305 140652907 140653064 2.880000e-55 226
15 TraesCS6B01G317100 chr3A 87.857 280 28 1 312 585 693200757 693200478 9.920000e-85 324
16 TraesCS6B01G317100 chr2B 75.317 709 138 28 42 731 522191219 522191909 3.590000e-79 305
17 TraesCS6B01G317100 chr2B 88.068 176 21 0 1131 1306 54440321 54440496 2.900000e-50 209
18 TraesCS6B01G317100 chr5D 85.606 264 36 2 470 731 464875145 464875408 2.820000e-70 276
19 TraesCS6B01G317100 chr7D 92.453 159 12 0 1147 1305 174992613 174992771 8.000000e-56 228
20 TraesCS6B01G317100 chr7A 92.453 159 12 0 1147 1305 177136163 177136321 8.000000e-56 228
21 TraesCS6B01G317100 chr2A 89.773 176 18 0 1131 1306 35975998 35976173 2.880000e-55 226


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G317100 chr6B 564991876 564994745 2869 True 5301.0 5301 100.0000 1 2870 1 chr6B.!!$R1 2869
1 TraesCS6B01G317100 chr6A 520354021 520356129 2108 True 1452.0 2335 91.3560 731 2870 2 chr6A.!!$R1 2139
2 TraesCS6B01G317100 chr6A 76763801 76764544 743 False 669.0 669 83.0870 1 736 1 chr6A.!!$F1 735
3 TraesCS6B01G317100 chr6D 378376751 378379862 3111 True 1152.5 2026 92.9705 731 2870 2 chr6D.!!$R2 2139
4 TraesCS6B01G317100 chr1B 665268233 665268937 704 True 1140.0 1140 96.0280 1 698 1 chr1B.!!$R1 697
5 TraesCS6B01G317100 chr5A 533273127 533273864 737 True 1101.0 1101 93.7750 1 730 1 chr5A.!!$R1 729
6 TraesCS6B01G317100 chr3D 591752913 591753651 738 False 1070.0 1070 92.9630 1 731 1 chr3D.!!$F1 730
7 TraesCS6B01G317100 chr2D 595197588 595198323 735 True 1009.0 1009 91.5880 1 729 1 chr2D.!!$R1 728
8 TraesCS6B01G317100 chr2B 522191219 522191909 690 False 305.0 305 75.3170 42 731 1 chr2B.!!$F2 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.60864 GTCTTTCTTGGAGCCTCGGA 59.391 55.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2060 0.315886 TGCAGCCACAGAAATGCAAG 59.684 50.0 0.0 0.0 45.09 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 6.375174 CCTTATCATCAGTGGAATTTGTGACA 59.625 38.462 0.00 0.00 0.00 3.58
97 98 1.668151 GGAGCGCACGAAGAAAGGT 60.668 57.895 11.47 0.00 0.00 3.50
234 235 3.467226 AGCGACGTATGGGGTGGG 61.467 66.667 0.00 0.00 0.00 4.61
318 319 2.991076 GCGGTCAGAGCGGTGTACT 61.991 63.158 22.86 0.00 39.82 2.73
321 322 1.446272 GTCAGAGCGGTGTACTGGC 60.446 63.158 0.00 0.00 33.19 4.85
352 353 0.608640 GTCTTTCTTGGAGCCTCGGA 59.391 55.000 0.00 0.00 0.00 4.55
434 441 4.096081 GGACTGGCAGAAGATTTGAATCTG 59.904 45.833 23.66 0.00 44.67 2.90
454 461 4.937620 TCTGAATCAAATACAGCTCGCTTT 59.062 37.500 0.00 0.00 0.00 3.51
465 472 0.944386 GCTCGCTTTGGACTGTGAAA 59.056 50.000 0.00 0.00 0.00 2.69
814 823 0.887933 AGGGGCACTTGCGTAATTTG 59.112 50.000 0.00 0.00 43.26 2.32
983 998 3.969981 GCGCTCTCTTATAGAACGTTCTC 59.030 47.826 32.86 14.83 44.03 2.87
1400 1415 2.592993 CCTCCTCCCGCTCCAACAA 61.593 63.158 0.00 0.00 0.00 2.83
1409 1424 2.972505 CTCCAACAACGGCAGCGT 60.973 61.111 0.00 0.00 0.00 5.07
1498 1519 1.474320 CGTCCAACTCCAACTCCAACA 60.474 52.381 0.00 0.00 0.00 3.33
1500 1521 1.843851 TCCAACTCCAACTCCAACACT 59.156 47.619 0.00 0.00 0.00 3.55
1504 1525 1.202533 ACTCCAACTCCAACACTGTCG 60.203 52.381 0.00 0.00 0.00 4.35
1637 1658 4.306245 ACCTCTCCCGGTGTTCAA 57.694 55.556 0.00 0.00 35.52 2.69
1674 1695 3.581687 GATGGAGGAGGCGATCGGC 62.582 68.421 32.17 32.17 42.51 5.54
1875 1896 3.624777 CGTCTACCTACCCTAGTTTGGA 58.375 50.000 0.00 0.00 0.00 3.53
1882 1903 8.568723 TCTACCTACCCTAGTTTGGATTAGTTA 58.431 37.037 0.00 0.00 0.00 2.24
1883 1904 9.377238 CTACCTACCCTAGTTTGGATTAGTTAT 57.623 37.037 0.00 0.00 0.00 1.89
1884 1905 8.634188 ACCTACCCTAGTTTGGATTAGTTATT 57.366 34.615 0.00 0.00 0.00 1.40
1885 1906 9.733907 ACCTACCCTAGTTTGGATTAGTTATTA 57.266 33.333 0.00 0.00 0.00 0.98
1916 1937 4.941263 TCACGATTGCCTTAATTAAGCTGT 59.059 37.500 18.18 7.71 32.02 4.40
1920 1941 5.582550 GATTGCCTTAATTAAGCTGTGGTC 58.417 41.667 18.18 8.21 32.02 4.02
1922 1943 4.402829 TGCCTTAATTAAGCTGTGGTCAA 58.597 39.130 18.18 0.00 32.02 3.18
1923 1944 4.830046 TGCCTTAATTAAGCTGTGGTCAAA 59.170 37.500 18.18 0.00 32.02 2.69
1924 1945 5.480073 TGCCTTAATTAAGCTGTGGTCAAAT 59.520 36.000 18.18 0.00 32.02 2.32
1925 1946 6.036470 GCCTTAATTAAGCTGTGGTCAAATC 58.964 40.000 18.18 0.00 32.02 2.17
1966 1987 3.195825 CCAACAGCTAGCTGGTAAGTACT 59.804 47.826 40.06 19.85 42.91 2.73
1967 1988 4.177026 CAACAGCTAGCTGGTAAGTACTG 58.823 47.826 40.06 21.76 42.91 2.74
2026 2054 3.573538 TGCACTTGTACCGTACCTCTTTA 59.426 43.478 6.23 0.00 0.00 1.85
2032 2060 6.875726 ACTTGTACCGTACCTCTTTATTTTCC 59.124 38.462 6.23 0.00 0.00 3.13
2056 2084 0.311790 ATTTCTGTGGCTGCACAACG 59.688 50.000 0.50 0.00 34.35 4.10
2088 2116 6.142817 GTGTAAGAAAGCTAACCATTGTGTG 58.857 40.000 0.00 0.00 0.00 3.82
2089 2117 5.825679 TGTAAGAAAGCTAACCATTGTGTGT 59.174 36.000 0.00 0.00 0.00 3.72
2112 2140 3.000041 GCTACAACCGAATCACATCACA 59.000 45.455 0.00 0.00 0.00 3.58
2131 2159 8.562892 ACATCACAACTTATTCTTGTTTCTCTG 58.437 33.333 0.00 0.00 29.02 3.35
2139 2167 8.940952 ACTTATTCTTGTTTCTCTGTAGATTGC 58.059 33.333 0.00 0.00 0.00 3.56
2146 2174 5.348724 TGTTTCTCTGTAGATTGCGATTGTC 59.651 40.000 0.00 0.00 0.00 3.18
2180 2208 5.350633 CAATGCATGTTGTACCCCTAAATG 58.649 41.667 0.00 0.00 0.00 2.32
2181 2209 3.360867 TGCATGTTGTACCCCTAAATGG 58.639 45.455 0.00 0.00 0.00 3.16
2182 2210 2.100749 GCATGTTGTACCCCTAAATGGC 59.899 50.000 0.00 0.00 0.00 4.40
2183 2211 3.631250 CATGTTGTACCCCTAAATGGCT 58.369 45.455 0.00 0.00 0.00 4.75
2184 2212 4.787551 CATGTTGTACCCCTAAATGGCTA 58.212 43.478 0.00 0.00 0.00 3.93
2185 2213 4.931027 TGTTGTACCCCTAAATGGCTAA 57.069 40.909 0.00 0.00 0.00 3.09
2186 2214 5.258216 TGTTGTACCCCTAAATGGCTAAA 57.742 39.130 0.00 0.00 0.00 1.85
2187 2215 5.833340 TGTTGTACCCCTAAATGGCTAAAT 58.167 37.500 0.00 0.00 0.00 1.40
2291 3302 1.329292 GCGGCGTAAAGATGTGCAATA 59.671 47.619 9.37 0.00 0.00 1.90
2293 3304 3.185594 GCGGCGTAAAGATGTGCAATATA 59.814 43.478 9.37 0.00 0.00 0.86
2330 3341 3.482722 ACATTTTTCTGCGCAGATCAG 57.517 42.857 38.40 26.57 37.29 2.90
2331 3342 2.182825 CATTTTTCTGCGCAGATCAGC 58.817 47.619 38.40 0.00 37.29 4.26
2356 3367 6.849588 TGTCATACACATGCATACTTCATC 57.150 37.500 0.00 0.00 31.73 2.92
2357 3368 5.759763 TGTCATACACATGCATACTTCATCC 59.240 40.000 0.00 0.00 31.73 3.51
2358 3369 4.990426 TCATACACATGCATACTTCATCCG 59.010 41.667 0.00 0.00 31.73 4.18
2359 3370 3.266510 ACACATGCATACTTCATCCGT 57.733 42.857 0.00 0.00 0.00 4.69
2360 3371 3.609853 ACACATGCATACTTCATCCGTT 58.390 40.909 0.00 0.00 0.00 4.44
2361 3372 3.623060 ACACATGCATACTTCATCCGTTC 59.377 43.478 0.00 0.00 0.00 3.95
2362 3373 3.002656 CACATGCATACTTCATCCGTTCC 59.997 47.826 0.00 0.00 0.00 3.62
2363 3374 1.934589 TGCATACTTCATCCGTTCCG 58.065 50.000 0.00 0.00 0.00 4.30
2364 3375 1.206132 TGCATACTTCATCCGTTCCGT 59.794 47.619 0.00 0.00 0.00 4.69
2365 3376 2.277084 GCATACTTCATCCGTTCCGTT 58.723 47.619 0.00 0.00 0.00 4.44
2366 3377 2.676342 GCATACTTCATCCGTTCCGTTT 59.324 45.455 0.00 0.00 0.00 3.60
2367 3378 3.242316 GCATACTTCATCCGTTCCGTTTC 60.242 47.826 0.00 0.00 0.00 2.78
2368 3379 2.536761 ACTTCATCCGTTCCGTTTCA 57.463 45.000 0.00 0.00 0.00 2.69
2369 3380 2.841215 ACTTCATCCGTTCCGTTTCAA 58.159 42.857 0.00 0.00 0.00 2.69
2370 3381 3.207778 ACTTCATCCGTTCCGTTTCAAA 58.792 40.909 0.00 0.00 0.00 2.69
2371 3382 3.628487 ACTTCATCCGTTCCGTTTCAAAA 59.372 39.130 0.00 0.00 0.00 2.44
2372 3383 4.096682 ACTTCATCCGTTCCGTTTCAAAAA 59.903 37.500 0.00 0.00 0.00 1.94
2396 3407 9.515020 AAAAATGTATACTGCATCCGTAATTTG 57.485 29.630 4.17 0.00 0.00 2.32
2401 3412 4.621068 ACTGCATCCGTAATTTGACATG 57.379 40.909 0.00 0.00 0.00 3.21
2402 3413 4.260985 ACTGCATCCGTAATTTGACATGA 58.739 39.130 0.00 0.00 0.00 3.07
2405 3416 6.127647 ACTGCATCCGTAATTTGACATGATTT 60.128 34.615 0.00 0.00 0.00 2.17
2408 3419 7.063191 TGCATCCGTAATTTGACATGATTTTTG 59.937 33.333 0.00 0.00 0.00 2.44
2436 3560 6.946009 AAAGTATTTTCCGATCCTTCTTGGAA 59.054 34.615 0.00 0.00 42.00 3.53
2437 3561 7.615757 AAAGTATTTTCCGATCCTTCTTGGAAT 59.384 33.333 0.00 0.00 42.00 3.01
2502 3627 8.303876 AGTCTTAGAAACATTGAGAGAGAAGAC 58.696 37.037 0.00 0.00 39.41 3.01
2505 3630 8.824159 TTAGAAACATTGAGAGAGAAGACAAG 57.176 34.615 0.00 0.00 0.00 3.16
2531 3658 7.376072 GCCAAGAAAATAGTTTAAATCGGATCG 59.624 37.037 0.00 0.00 0.00 3.69
2533 3660 9.982291 CAAGAAAATAGTTTAAATCGGATCGAA 57.018 29.630 0.00 0.00 39.99 3.71
2573 3701 8.055279 TCTCCATTCCATTATGAAAGTTTGAC 57.945 34.615 0.00 0.00 0.00 3.18
2604 3732 0.961019 TGCAACAAGGCCAAAGCTAG 59.039 50.000 5.01 0.00 39.73 3.42
2606 3734 1.200948 GCAACAAGGCCAAAGCTAGAG 59.799 52.381 5.01 0.00 39.73 2.43
2618 3746 1.885049 AGCTAGAGAAGATTGGGGCA 58.115 50.000 0.00 0.00 0.00 5.36
2641 3769 6.315393 GCATTATAGTTTTCCTCCGAAGAACA 59.685 38.462 0.00 0.00 0.00 3.18
2731 3859 9.301153 GGTTATCGTAGTACTTAAAATTTCGGA 57.699 33.333 0.00 0.00 0.00 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.816224 GCCCATAACGTCACAACCAAT 59.184 47.619 0.00 0.00 0.00 3.16
97 98 4.670896 TTGAAGATATCCTCGTGCATGA 57.329 40.909 8.64 8.64 0.00 3.07
234 235 2.165030 CCAAATCATCTGGAGGTGCAAC 59.835 50.000 0.00 0.00 35.85 4.17
306 307 1.246056 TTACGCCAGTACACCGCTCT 61.246 55.000 0.00 0.00 31.60 4.09
316 317 1.071699 AGACACCATGTTTACGCCAGT 59.928 47.619 0.00 0.00 0.00 4.00
318 319 2.264005 AAGACACCATGTTTACGCCA 57.736 45.000 0.00 0.00 0.00 5.69
321 322 4.513692 TCCAAGAAAGACACCATGTTTACG 59.486 41.667 0.00 0.00 0.00 3.18
434 441 4.094887 TCCAAAGCGAGCTGTATTTGATTC 59.905 41.667 13.13 0.00 35.19 2.52
454 461 3.659786 CGTACCATTCTTTCACAGTCCA 58.340 45.455 0.00 0.00 0.00 4.02
465 472 1.202417 CCTCACATCGCGTACCATTCT 60.202 52.381 5.77 0.00 0.00 2.40
776 785 2.755103 CCTGGCTTCTAAATGTTGACCC 59.245 50.000 0.00 0.00 0.00 4.46
814 823 3.195698 GGATCGTTGCTGCCCGTC 61.196 66.667 0.00 0.86 0.00 4.79
983 998 1.075482 ATGGGCTGGTGTGGAGTTG 59.925 57.895 0.00 0.00 0.00 3.16
1293 1308 3.368571 GAGCTGCGCTTGGCCTTT 61.369 61.111 9.73 0.00 39.88 3.11
1341 1356 4.379243 CTCTTGGCGTCCGTGGCT 62.379 66.667 0.00 0.00 35.06 4.75
1674 1695 4.463879 CCCGGGAGCAGCAGTGAG 62.464 72.222 18.48 0.00 0.00 3.51
1707 1728 1.305718 GGTGGGCTCCTCTGTCTCT 60.306 63.158 0.00 0.00 0.00 3.10
1711 1732 3.325753 GCAGGTGGGCTCCTCTGT 61.326 66.667 5.37 0.00 35.37 3.41
1755 1776 1.375396 CGCGTCCAGGGACATGAAA 60.375 57.895 17.97 0.00 44.77 2.69
1812 1833 4.697756 CAGCTCCCGCCGTTCCAA 62.698 66.667 0.00 0.00 36.60 3.53
1848 1869 1.224592 GGGTAGGTAGACGGACGGA 59.775 63.158 0.00 0.00 0.00 4.69
1882 1903 8.902540 TTAAGGCAATCGTGATGAGTAATAAT 57.097 30.769 0.00 0.00 0.00 1.28
1883 1904 8.902540 ATTAAGGCAATCGTGATGAGTAATAA 57.097 30.769 0.00 0.00 0.00 1.40
1884 1905 8.902540 AATTAAGGCAATCGTGATGAGTAATA 57.097 30.769 0.00 0.00 0.00 0.98
1885 1906 7.807977 AATTAAGGCAATCGTGATGAGTAAT 57.192 32.000 0.00 0.00 0.00 1.89
1886 1907 8.725405 TTAATTAAGGCAATCGTGATGAGTAA 57.275 30.769 0.00 0.00 0.00 2.24
1887 1908 7.042051 GCTTAATTAAGGCAATCGTGATGAGTA 60.042 37.037 23.37 0.00 33.95 2.59
1888 1909 6.238484 GCTTAATTAAGGCAATCGTGATGAGT 60.238 38.462 23.37 0.00 33.95 3.41
1916 1937 5.471797 TCGTTAAGAAGCATTGATTTGACCA 59.528 36.000 0.00 0.00 0.00 4.02
1920 1941 5.504755 GTCGTCGTTAAGAAGCATTGATTTG 59.495 40.000 0.00 0.00 0.00 2.32
1922 1943 4.092968 GGTCGTCGTTAAGAAGCATTGATT 59.907 41.667 0.00 0.00 0.00 2.57
1923 1944 3.617263 GGTCGTCGTTAAGAAGCATTGAT 59.383 43.478 0.00 0.00 0.00 2.57
1924 1945 2.991190 GGTCGTCGTTAAGAAGCATTGA 59.009 45.455 0.00 0.00 0.00 2.57
1925 1946 2.734606 TGGTCGTCGTTAAGAAGCATTG 59.265 45.455 0.00 0.00 0.00 2.82
1966 1987 8.223100 CGTACGTAGCATTACATGTACTATACA 58.777 37.037 4.68 0.00 43.80 2.29
1967 1988 8.223769 ACGTACGTAGCATTACATGTACTATAC 58.776 37.037 21.41 6.42 30.64 1.47
2026 2054 3.325716 AGCCACAGAAATGCAAGGAAAAT 59.674 39.130 0.00 0.00 0.00 1.82
2032 2060 0.315886 TGCAGCCACAGAAATGCAAG 59.684 50.000 0.00 0.00 45.09 4.01
2056 2084 3.990318 AGCTTTCTTACACAAACCTGC 57.010 42.857 0.00 0.00 0.00 4.85
2131 2159 5.578727 AGAAGTTCAGACAATCGCAATCTAC 59.421 40.000 5.50 0.00 0.00 2.59
2139 2167 4.436584 GCATTGGAGAAGTTCAGACAATCG 60.437 45.833 5.50 8.27 0.00 3.34
2146 2174 4.022589 ACAACATGCATTGGAGAAGTTCAG 60.023 41.667 5.50 0.00 33.63 3.02
2180 2208 7.617041 ACTGAGACAAGTCAATAATTTAGCC 57.383 36.000 2.72 0.00 0.00 3.93
2187 2215 9.025041 TGAGAGAATACTGAGACAAGTCAATAA 57.975 33.333 2.72 0.00 0.00 1.40
2253 3255 5.938125 ACGCCGCAATCTATATATTTTTCCT 59.062 36.000 0.00 0.00 0.00 3.36
2304 3315 6.308524 TGATCTGCGCAGAAAAATGTTAAATG 59.691 34.615 40.83 10.04 41.36 2.32
2312 3323 2.556534 GCTGATCTGCGCAGAAAAAT 57.443 45.000 40.83 26.45 41.36 1.82
2322 3333 1.590238 GTGTATGACACGCTGATCTGC 59.410 52.381 14.16 14.16 39.53 4.26
2370 3381 9.515020 CAAATTACGGATGCAGTATACATTTTT 57.485 29.630 5.50 0.00 0.00 1.94
2371 3382 8.898761 TCAAATTACGGATGCAGTATACATTTT 58.101 29.630 5.50 0.00 0.00 1.82
2372 3383 8.342634 GTCAAATTACGGATGCAGTATACATTT 58.657 33.333 5.50 0.00 0.00 2.32
2373 3384 7.497579 TGTCAAATTACGGATGCAGTATACATT 59.502 33.333 5.50 0.00 0.00 2.71
2374 3385 6.989759 TGTCAAATTACGGATGCAGTATACAT 59.010 34.615 5.50 0.00 0.00 2.29
2375 3386 6.342111 TGTCAAATTACGGATGCAGTATACA 58.658 36.000 5.50 0.00 0.00 2.29
2383 3394 7.275341 TCAAAAATCATGTCAAATTACGGATGC 59.725 33.333 0.00 0.00 0.00 3.91
2408 3419 7.755373 CCAAGAAGGATCGGAAAATACTTTTTC 59.245 37.037 3.21 3.21 43.82 2.29
2436 3560 9.956640 TCCTGTTTTGGAAATGCAAAATATAAT 57.043 25.926 14.49 0.00 33.61 1.28
2437 3561 9.784531 TTCCTGTTTTGGAAATGCAAAATATAA 57.215 25.926 14.49 7.88 42.51 0.98
2500 3625 8.850452 CGATTTAAACTATTTTCTTGGCTTGTC 58.150 33.333 0.00 0.00 0.00 3.18
2502 3627 8.026607 TCCGATTTAAACTATTTTCTTGGCTTG 58.973 33.333 0.00 0.00 0.00 4.01
2505 3630 7.376072 CGATCCGATTTAAACTATTTTCTTGGC 59.624 37.037 0.00 0.00 0.00 4.52
2567 3695 6.654122 TGTTGCAAAGAAAAACAAGTCAAAC 58.346 32.000 0.00 0.00 31.16 2.93
2604 3732 7.255625 GGAAAACTATAATGCCCCAATCTTCTC 60.256 40.741 0.00 0.00 0.00 2.87
2606 3734 6.551227 AGGAAAACTATAATGCCCCAATCTTC 59.449 38.462 0.00 0.00 0.00 2.87
2618 3746 7.391620 TGTGTTCTTCGGAGGAAAACTATAAT 58.608 34.615 19.94 0.00 33.45 1.28
2641 3769 3.440173 CGACAAAGCCCTAACATGATTGT 59.560 43.478 0.00 0.00 37.82 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.